CCinxPred?
  • Old Analysis Attempts
    • CMap Data
    • Sanity Check
    • Tx pred
    • Lvl5 lig pred
    • Lvl5 followup
    • Lvl4 lig pred
    • Lig pred on new CT
    • Lig prob on new CT
  • Figures For Paper
    • Fig 1
    • Fig 1 (all genes)
    • Fig 2
    • Fig 2 (all genes)
    • Fig 3
    • Fig 3 (all genes)
    • Fig 4
  • Paper Figs v2
    • Z-score correlation
    • GSEA results
    • DE overlap
    • DE overlap (FDR)
    • Receptor availability
    • NicheNet
  • Paper Figs v3
    • Fig 1 & 2: DE overlap (FDR)
    • Fig 3: GSEA (& Z-score) correlation
    • Fig 4: RF results
    • Fig 5: NicheNet
    • Final GSEA stuff

CCInxPred?

Abstract

Can intercellular signals be identified by transcriptional changes?


This should be where I outline the why and how of this project.
https://clue.io/connectopedia/data_levels for information on the input data.


Go to the github repo