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Original content was published Reimand, J., Isserlin, R., Voisin, V. et al. Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap. Nat Protoc 14, 482–517 (2019). https://doi.org/10.1038/s41596-018-0103-9 and this book only updates relevant steps in the protocol procedures section to reflect later versions of software packages.

Attributions:

This book was created using The bookdown package and can be installed from CRAN or Github:

install.packages("bookdown")
# or the development version
# devtools::install_github("rstudio/bookdown")

Icons are from the “Very Basic. Android L Lollipop” set by Ivan Boyko licensed under CC BY 3.0.