CBW Pathways Workshop
Pathway and Network Analysis of -Omics Data ( May 2021 )
- Meet your Faculty
Welcome
Module 1 - Introduction to Pathway and Network Analysis (Gary Bader)
Module 2: Finding Over-represented Pathways (Veronique Voisin)
Module 2 lab - g:Profiler
Module 2 lab - GSEA
Module 3: Network Visualization and Analysis with Cytoscape
Module 3 Lab: g:profiler Visualization
Module 3 Lab: GSEA Visualization
Module 3 Lab: (Bonus) Automation
Module 4: In-depth Analysis of Networks and Pathways
Module 5: Regulatory Network Analysis
Module 5 Lab 1: Gene Regulation and Motif Analysis Practical Lab /chIP-seq
Module 5 Lab 2: Gene Regulation and Motif Analysis Practical Lab / iRegulon
Module 6: Gene Function Prediction
Module 6 Lab: GeneMANIA (Cytoscape version)
Module 6 Lab: GeneMANIA (web version)
Integrated Assignment
Integrated Assignment Bonus - Automation
- Goal of the exercise:
Module 08 -1 lab - scRNA pathway analysis using g:Profiler {#scRNA gprofiler-lab}
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Pathways

Module 6: Gene Function Prediction

Veronique Voisin

Recorded video 1

Recorded video 2

Lab practical - Cytoscape

Lab practical - Web