CBW Pathways Workshop
Pathway and Network Analysis of -Omics Data (July 2020)
- Meet your Faculty
Welcome
Module 1 - Introduction to Pathway and Network Analysis (Gary Bader)
Module 2: Finding Over-represented Pathways (Veronique Voisin)
Module 2 lab - g:Profiler
Module 2 lab - GSEA
Module 3: Network Visualization and Analysis with Cytoscape
- Module 3 Lab
Module 3 Lab: g:profiler Visualization
Module 3 Lab: GSEA Visualization
Module 3 Lab: (Bonus) Automation
- Goal of the exercise:
Module 4: In-depth Analysis of Networks and Pathways
Module 5: Regulatory Network Analysis
Module 5 Lab: Gene Regulation and Motif Analysis Practical Lab
Module 6: Gene Function Prediction
Module 6 Lab: GeneMANIA (Cytoscape version)
Module 6 Lab: GeneMANIA (web version)
Integrated Assignment
Integrated Assignment Bonus - Automation
- Goal of the exercise:
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Pathways

Module 3: Network Visualization and Analysis with Cytoscape

Ruth Isserlin

Module 3 Lab

Ruth Isserlin

Lab practical part 1 (g:Profiler)

Lab practical part 2 (GSEA)