Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error 
AGL	178	genome.wustl.edu	36	1	100122272	100122272	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	100122272	100122272	G	A	SNP	AGL	NM_000028	human	genbank	54_36p	1	validated	missense	c.2317	p.E773K	1	NULL	"superfamily_(Trans)glycosidases,HMMPfam_GDE_C,superfamily_Six-hairpin glycosidases"	-	no_errors
SASS6	163786	genome.wustl.edu	36	1	100345785	100345785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	100345785	100345785	G	A	SNP	SASS6	NM_194292	human	genbank	54_36p	-1	validated	missense	c.1133	p.A378V	1	NULL	NULL	-	no_errors
LRRC39	127495	genome.wustl.edu	36	1	100390656	100390656	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	100390656	100390656	G	A	SNP	LRRC39	NM_144620	human	genbank	54_36p	-1	provisional	silent	c.825	p.F275	1	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
UBE4B	10277	genome.wustl.edu	36	1	10161345	10161345	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	10161345	10161345	G	C	SNP	UBE4B	NM_001105562	human	genbank	54_36p	1	reviewed	silent	c.3582	p.G1194	0.97	HMMPfam_Ufd2P_core	"HMMPfam_Ufd2P_core,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504"	-	no_errors
OLFM3	118427	genome.wustl.edu	36	1	102042416	102042416	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	102042416	102042416	A	C	SNP	OLFM3	NM_058170	human	genbank	54_36p	-1	validated	missense	c.1343	p.L448R	1	"HMMPfam_OLF,HMMSmart_SM00284"	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
OLFM3	118427	genome.wustl.edu	36	1	102063368	102063368	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	102063368	102063368	C	G	SNP	OLFM3	NM_058170	human	genbank	54_36p	-1	validated	missense	c.394	p.E132Q	1	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
COL11A1	1301	genome.wustl.edu	36	1	103119897	103119897	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	103119897	103119897	A	T	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.5020	p.S1674T	1	"HMMSmart_COLFI,HMMPfam_COLFI"	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI"	-	no_errors
COL11A1	1301	genome.wustl.edu	36	1	103264008	103264008	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	103264008	103264008	T	A	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.869	p.E290V	1	NULL	"HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
KIF1B	23095	genome.wustl.edu	36	1	10347892	10347892	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	10347892	10347892	T	C	SNP	KIF1B	NM_015074	human	genbank	54_36p	1	reviewed	splice_site	c.4374+2	e39+2	1	-	-	-	no_errors
AMY2A	279	genome.wustl.edu	36	1	103968324	103968324	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	103968324	103968324	G	T	SNP	AMY2A	NM_000699	human	genbank	54_36p	1	reviewed	missense	c.1304	p.G435V	1	"superfamily_SSF51011,HMMSmart_Aamy_C,HMMPfam_Alpha-amylase_C"	"superfamily_Glyco_hydro_cat,HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_SSF51011,HMMSmart_Aamy_C,HMMPfam_Alpha-amylase_C"	-	no_errors
LOC100129138	100129138	genome.wustl.edu	36	1	104417150	104417150	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	104417150	104417150	C	T	SNP	LOC100129138	XR_036957	human	genbank	54_36p	1	model	rna	NULL	NULL	0.92	-	-	-	no_errors
LOC126987	126987	genome.wustl.edu	36	1	106424948	106424948	+	RNA	SNP	A	T	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	106424948	106424948	A	T	SNP	LOC126987	XR_016153	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.25	-	-	-	no_errors
NTNG1	22854	genome.wustl.edu	36	1	107669038	107669038	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	107669038	107669038	C	G	SNP	NTNG1	NM_014917	human	genbank	54_36p	1	provisional	nonsense	c.858	p.Y286*	1	"HMMPfam_Laminin_N,HMMSmart_LamNT"	"HMMPfam_Laminin_N,HMMSmart_LamNT,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,HMMSmart_EGF,HMMPfam_EGF_2"	-	no_errors
VAV3	10451	genome.wustl.edu	36	1	108114816	108114816	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	108114816	108114816	C	A	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	nonsense	c.613	p.E205*	1	"superfamily_Calponin-homology domain CH-domain,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC25A24	29957	genome.wustl.edu	36	1	108499178	108499178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	108499178	108499178	C	T	SNP	SLC25A24	NM_013386	human	genbank	54_36p	-1	validated	missense	c.772	p.V258I	1	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	-	no_errors
C1orf59	113802	genome.wustl.edu	36	1	108998946	108998946	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	108998946	108998946	T	G	SNP	C1orf59	NM_001102592	human	genbank	54_36p	-1	validated	missense	c.313	p.N105H	0	superfamily_SSF53335	superfamily_SSF53335	-	no_errors
C1orf59	113802	genome.wustl.edu	36	1	109001645	109001645	+	Missense_Mutation	SNP	T	T	A	rs11540221	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109001645	109001645	T	A	SNP	C1orf59	NM_001102592	human	genbank	54_36p	-1	validated	missense	c.101	p.Q34L	1	superfamily_SSF53335	superfamily_SSF53335	-	no_errors
STXBP3	6814	genome.wustl.edu	36	1	109116808	109116808	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109116808	109116808	A	T	SNP	STXBP3	NM_007269	human	genbank	54_36p	1	validated	splice_site	c.439-2	e7-2	1	-	-	-	no_errors
STXBP3	6814	genome.wustl.edu	36	1	109123502	109123502	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109123502	109123502	G	C	SNP	STXBP3	NM_007269	human	genbank	54_36p	1	validated	silent	c.756	p.L252	1	"superfamily_Sec1-like,HMMPfam_Sec1"	"superfamily_Sec1-like,HMMPfam_Sec1"	-	no_errors
AKNAD1	254268	genome.wustl.edu	36	1	109193134	109193136	+	In_Frame_Del	DEL	AAG	AAG	-	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	AAG	AAG	AAG	-	AAG	AAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109193134	109193136	AAG	-	DEL	C1orf62	NM_152763	human	genbank	54_36p	-1	validated	in_frame_del	c.1105_1103	p.S368in_frame_del	0.633:0.633:0.697	NULL	NULL	"(deletion:cds_exon[109193057,109193205])"	no_errors
AKNAD1	254268	genome.wustl.edu	36	1	109196288	109196288	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109196288	109196288	C	T	SNP	C1orf62	NM_152763	human	genbank	54_36p	-1	validated	silent	c.522	p.P174	0	NULL	NULL	-	no_errors
C1orf127	148345	genome.wustl.edu	36	1	10940267	10940267	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	10940267	10940267	C	G	SNP	C1orf127	NM_173507	human	genbank	54_36p	-1	predicted	missense	c.239	p.R80T	0.1	NULL	NULL	-	no_errors
C1orf194	127003	genome.wustl.edu	36	1	109457783	109457783	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109457783	109457783	C	A	SNP	C1orf194	ENST00000369949	human	ensembl	54_36p	-1	known	missense	c.40	p.A14S	0.02	NULL	NULL	-	no_errors
KIAA1324	57535	genome.wustl.edu	36	1	109547330	109547330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109547330	109547330	T	C	SNP	KIAA1324	ENST00000369939	human	ensembl	54_36p	1	known	missense	c.2773	p.C925R	0.97	NULL	"superfamily_Grow_fac_recept,superfamily_Man6php_recept"	-	no_stop_codon
MYBPHL	343263	genome.wustl.edu	36	1	109641076	109641076	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109641076	109641076	C	T	SNP	MYBPHL	NM_001010985	human	genbank	54_36p	-1	validated	silent	c.582	p.T194	0.14	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ATXN7L2	127002	genome.wustl.edu	36	1	109835204	109835204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	109835204	109835204	C	T	SNP	ATXN7L2	NM_153340	human	genbank	54_36p	1	validated	missense	c.1496	p.P499L	0.53	NULL	HMMPfam_SCA7	-	no_errors
TARDBP	23435	genome.wustl.edu	36	1	11001432	11001432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11001432	11001432	C	T	SNP	TARDBP	NM_007375	human	genbank	54_36p	1	reviewed	missense	c.458	p.T153M	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
TARDBP	23435	genome.wustl.edu	36	1	11005039	11005039	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11005039	11005039	C	T	SNP	TARDBP	NM_007375	human	genbank	54_36p	1	reviewed	missense	c.986	p.A329V	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
FAM40A	85369	genome.wustl.edu	36	1	110389166	110389166	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110389166	110389166	G	A	SNP	FAM40A	NM_033088	human	genbank	54_36p	1	validated	silent	c.1359	p.T453	0.79	NULL	HMMPfam_N1221	-	no_errors
FAM40A	85369	genome.wustl.edu	36	1	110390856	110390856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110390856	110390856	C	T	SNP	FAM40A	NM_033088	human	genbank	54_36p	1	validated	missense	c.1448	p.A483V	0.95	NULL	HMMPfam_N1221	-	no_errors
UBL4B	164153	genome.wustl.edu	36	1	110456870	110456870	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110456870	110456870	A	G	SNP	UBL4B	NM_203412	human	genbank	54_36p	1	validated	missense	c.191	p.N64S	0.96	"HMMSmart_UBQ,superfamily_SSF54236,HMMPfam_ubiquitin"	"PatternScan_UBIQUITIN_1,HMMSmart_UBQ,superfamily_SSF54236,HMMPfam_ubiquitin"	-	no_errors
SLC6A17	388662	genome.wustl.edu	36	1	110539769	110539780	+	In_Frame_Del	DEL	TTCGTCCAGCGC	TTCGTCCAGCGC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TTCGTCCAGCGC	TTCGTCCAGCGC	TTCGTCCAGCGC	-	TTCGTCCAGCGC	TTCGTCCAGCGC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110539769	110539780	TTCGTCCAGCGC	-	DEL	SLC6A17	NM_001010898	human	genbank	54_36p	1	validated	in_frame_del	c.1531_1542	p.FVQR511in_frame_del	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.996	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	"(deletion:cds_exon[110539731,110539890])"	no_errors
RBM15	64783	genome.wustl.edu	36	1	110689748	110689748	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110689748	110689748	G	A	SNP	RBM15	NM_022768	human	genbank	54_36p	1	validated	silent	c.2928	p.L976	0	NULL	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,superfamily_SPOC domain-like,HMMPfam_SPOC"	-	no_errors
SLC16A4	9122	genome.wustl.edu	36	1	110725182	110725182	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110725182	110725182	C	T	SNP	SLC16A4	NM_004696	human	genbank	54_36p	-1	provisional	silent	c.471	p.L157	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC16A4	9122	genome.wustl.edu	36	1	110725868	110725868	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110725868	110725868	G	A	SNP	SLC16A4	NM_004696	human	genbank	54_36p	-1	provisional	missense	c.293	p.T98I	0.98	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
KCNA10	3744	genome.wustl.edu	36	1	110862267	110862267	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110862267	110862267	C	G	SNP	KCNA10	NM_005549	human	genbank	54_36p	-1	reviewed	silent	c.666	p.S222	0.16	superfamily_SSF81324	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA10	3744	genome.wustl.edu	36	1	110862818	110862818	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110862818	110862818	C	G	SNP	KCNA10	NM_005549	human	genbank	54_36p	-1	reviewed	missense	c.115	p.G39R	0.22	NULL	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
KCNA2	3737	genome.wustl.edu	36	1	110948093	110948093	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	110948093	110948093	C	G	SNP	KCNA2	NM_004974	human	genbank	54_36p	-1	reviewed	missense	c.835	p.E279Q	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111017553	111017553	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111017553	111017553	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.1402	p.G468S	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111018078	111018078	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111018078	111018078	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.877	p.D293N	1	superfamily_SSF81324	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
KCNA3	3738	genome.wustl.edu	36	1	111018156	111018156	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111018156	111018156	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.799	p.A267T	0.05	superfamily_SSF81324	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
C1orf103	55791	genome.wustl.edu	36	1	111292268	111292268	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111292268	111292268	G	C	SNP	C1orf103	NM_018372	human	genbank	54_36p	-1	validated	missense	c.2146	p.Q716E	0.69	NULL	NULL	-	no_errors
C1orf103	55791	genome.wustl.edu	36	1	111295733	111295733	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111295733	111295733	G	C	SNP	C1orf103	NM_018372	human	genbank	54_36p	-1	validated	silent	c.1296	p.T432	0	NULL	NULL	-	no_errors
DENND2D	79961	genome.wustl.edu	36	1	111543793	111543793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111543793	111543793	G	T	SNP	DENND2D	NM_024901	human	genbank	54_36p	-1	provisional	missense	c.218	p.P73H	1	"HMMPfam_uDENN,HMMSmart_SM00800"	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801"	-	no_errors
CHIA	27159	genome.wustl.edu	36	1	111662823	111662823	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111662823	111662823	G	A	SNP	CHIA	NM_201653	human	genbank	54_36p	1	validated	silent	c.915	p.E305	1	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,PatternScan_CHITINASE_18,superfamily_Chitinase insertion domain,HMMSmart_SM00494,superfamily_Invertebrate chitin-binding proteins,HMMPfam_CBM_14"	-	no_errors
OVGP1	5016	genome.wustl.edu	36	1	111759162	111759162	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111759162	111759162	G	A	SNP	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	missense	c.1484	p.T495I	0	NULL	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	-	no_errors
OVGP1	5016	genome.wustl.edu	36	1	111770772	111770772	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111770772	111770772	G	C	SNP	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	missense	c.70	p.L24V	1	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	-	no_errors
C1orf162	128346	genome.wustl.edu	36	1	111822162	111822162	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111822162	111822162	C	T	SNP	C1orf162	NM_174896	human	genbank	54_36p	1	predicted	missense	c.362	p.A121V	0.01	NULL	NULL	-	no_errors
ADORA3	140	genome.wustl.edu	36	1	111844530	111844530	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111844530	111844530	C	A	SNP	ADORA3	NM_000677	human	genbank	54_36p	-1	reviewed	missense	c.522	p.M174I	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ADORA3	140	genome.wustl.edu	36	1	111847261	111847261	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	111847261	111847261	A	T	SNP	ADORA3	NM_020683	human	genbank	54_36p	-1	reviewed	missense	c.239	p.F80Y	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF48726"	-	no_errors
C1orf183	55924	genome.wustl.edu	36	1	112071729	112071729	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	112071729	112071729	G	C	SNP	C1orf183	NM_019099	human	genbank	54_36p	-1	validated	missense	c.278	p.P93R	0.05	NULL	NULL	-	no_errors
KCND3	3752	genome.wustl.edu	36	1	112131149	112131149	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	112131149	112131149	A	G	SNP	KCND3	NM_004980	human	genbank	54_36p	-1	reviewed	silent	c.1209	p.V403	0.98	superfamily_Voltage-gated potassium channels	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
MOV10	4343	genome.wustl.edu	36	1	113034079	113034079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113034079	113034079	G	A	SNP	MOV10	NM_020963	human	genbank	54_36p	1	validated	silent	c.672	p.S224	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ER_TARGET"	-	no_errors
MOV10	4343	genome.wustl.edu	36	1	113040590	113040590	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113040590	113040590	C	T	SNP	MOV10	NM_020963	human	genbank	54_36p	1	validated	missense	c.1892	p.S631L	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"PatternScan_ER_TARGET,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AKR7A2P1	246182	genome.wustl.edu	36	1	113268153	113268153	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113268153	113268153	G	C	SNP	AFARP1	NR_002796	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.81	-	-	-	pseudogene
LRIG2	9860	genome.wustl.edu	36	1	113442849	113442849	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113442849	113442849	G	A	SNP	LRIG2	NM_014813	human	genbank	54_36p	1	provisional	splice_site	c.1092-1	e9-1	1	-	-	-	no_errors
LRIG2	9860	genome.wustl.edu	36	1	113458810	113458810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	113458810	113458810	G	A	SNP	LRIG2	NM_014813	human	genbank	54_36p	1	provisional	silent	c.2319	p.G773	0.98	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF52047,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
PHTF1	10745	genome.wustl.edu	36	1	114050766	114050766	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114050766	114050766	C	A	SNP	PHTF1	NM_006608	human	genbank	54_36p	-1	validated	missense	c.1371	p.L457F	1	NULL	NULL	-	no_errors
BCL2L15	440603	genome.wustl.edu	36	1	114230738	114230738	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114230738	114230738	T	G	SNP	BCL2L15	NM_001010922	human	genbank	54_36p	-1	validated	missense	c.193	p.N65H	0.96	NULL	NULL	-	no_errors
AP4B1	10717	genome.wustl.edu	36	1	114244294	114244294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114244294	114244294	C	T	SNP	AP4B1	NM_006594	human	genbank	54_36p	-1	validated	missense	c.869	p.R290H	0.98	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N"	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N,HMMPfam_B2-adapt-app_C"	-	no_errors
AP4B1	10717	genome.wustl.edu	36	1	114245902	114245902	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114245902	114245902	A	C	SNP	AP4B1	NM_006594	human	genbank	54_36p	-1	validated	missense	c.467	p.V156G	1	"HMMPfam_Adaptin_N,superfamily_ARM-type_fold"	"HMMPfam_Adaptin_N,HMMPfam_B2-adapt-app_C,superfamily_ARM-type_fold"	-	no_errors
HIPK1	204851	genome.wustl.edu	36	1	114284738	114284738	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114284738	114284738	C	G	SNP	HIPK1	NM_198268	human	genbank	54_36p	1	reviewed	nonsense	c.210	p.Y70*	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
HIPK1	204851	genome.wustl.edu	36	1	114285144	114285144	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114285144	114285144	A	G	SNP	HIPK1	NM_198268	human	genbank	54_36p	1	reviewed	missense	c.616	p.K206E	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
SYT6	148281	genome.wustl.edu	36	1	114441903	114441903	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114441903	114441903	G	C	SNP	SYT6	NM_205848	human	genbank	54_36p	-1	validated	missense	c.1229	p.S410C	1	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SYT6	148281	genome.wustl.edu	36	1	114443407	114443407	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	114443407	114443407	G	C	SNP	SYT6	NM_205848	human	genbank	54_36p	-1	validated	missense	c.941	p.P314R	1	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
AMPD1	270	genome.wustl.edu	36	1	115019836	115019836	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	115019836	115019836	A	G	SNP	AMPD1	NM_000036	human	genbank	54_36p	-1	reviewed	missense	c.1517	p.I506T	1	"superfamily_SSF51556,HMMPfam_A_deaminase"	"superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE"	-	no_errors
AMPD1	270	genome.wustl.edu	36	1	115033075	115033075	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	115033075	115033075	T	C	SNP	AMPD1	ENST00000393268	human	ensembl	54_36p	-1	known	missense	c.4	p.I2V	0.05	NULL	"HMMPfam_A_deaminase,PatternScan_A_DEAMINASE,superfamily_Metallo-dependent hydrolases"	-	no_start_codon
CSDE1	7812	genome.wustl.edu	36	1	115083932	115083932	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	115083932	115083932	T	G	SNP	CSDE1	NM_001007553	human	genbank	54_36p	-1	validated	missense	c.103	p.T35P	1	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357"	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK,PatternScan_PEROXIDASE_2"	-	no_errors
PTCHD2	57540	genome.wustl.edu	36	1	11518272	11518272	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11518272	11518272	C	T	SNP	PTCHD2	NM_020780	human	genbank	54_36p	1	validated	missense	c.3800	p.P1267L	1	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
SLC22A15	55356	genome.wustl.edu	36	1	116363787	116363787	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116363787	116363787	G	C	SNP	SLC22A15	NM_018420	human	genbank	54_36p	1	validated	missense	c.326	p.G109A	1	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	-	no_errors
ATP1A1	476	genome.wustl.edu	36	1	116734487	116734487	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116734487	116734487	C	T	SNP	ATP1A1	NM_000701	human	genbank	54_36p	1	reviewed	missense	c.1153	p.R385W	1	"superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	###############################################################################################################################################################################################################################################################	-	no_errors
IGSF3	3321	genome.wustl.edu	36	1	116933217	116933217	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116933217	116933217	T	C	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.2122	p.T708A	1	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig"	-	no_errors
IGSF3	3321	genome.wustl.edu	36	1	116960585	116960585	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	116960585	116960585	G	A	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.61	p.R21W	1	"HMMPfam_V-set,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
GDAP2	54834	genome.wustl.edu	36	1	118222153	118222153	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	118222153	118222153	C	T	SNP	GDAP2	NM_017686	human	genbank	54_36p	-1	validated	splice_site	c.1446+1	e12+1	1	-	-	-	no_errors
SPAG17	200162	genome.wustl.edu	36	1	118307999	118307999	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	118307999	118307999	T	C	SNP	SPAG17	NM_206996	human	genbank	54_36p	-1	validated	silent	c.6618	p.T2206	0.17	NULL	NULL	-	no_errors
NPPB	4879	genome.wustl.edu	36	1	11841068	11841068	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11841068	11841068	C	A	SNP	NPPB	NM_002521	human	genbank	54_36p	-1	reviewed	nonsense	c.178	p.E60*	0	HMMPfam_ANP	"HMMPfam_ANP,HMMSmart_NAT_PEP,PatternScan_NATRIURETIC_PEPTIDE"	-	no_errors
PLOD1	5351	genome.wustl.edu	36	1	11939569	11939569	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11939569	11939569	G	A	SNP	PLOD1	NM_000302	human	genbank	54_36p	1	reviewed	missense	c.652	p.V218M	0.99	NULL	"HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE"	-	no_errors
PLOD1	5351	genome.wustl.edu	36	1	11946867	11946867	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	11946867	11946867	C	T	SNP	PLOD1	NM_000302	human	genbank	54_36p	1	reviewed	silent	c.1251	p.N417	1	NULL	"PatternScan_LYS_HYDROXYLASE,HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc"	-	no_errors
LOC343495	343495	genome.wustl.edu	36	1	119563486	119563486	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119563486	119563486	C	T	SNP	LOC343495	XR_016540	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HSD3B2	3284	genome.wustl.edu	36	1	119766708	119766708	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119766708	119766708	A	T	SNP	HSD3B2	NM_000198	human	genbank	54_36p	1	validated	missense	c.1061	p.E354V	0.8	superfamily_NAD(P)-binding Rossmann-fold domains	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD"	-	no_errors
LOC391073	391073	genome.wustl.edu	36	1	119778664	119778664	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119778664	119778664	G	T	SNP	LOC391073	XR_016552	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC391075	391075	genome.wustl.edu	36	1	119806459	119806459	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119806459	119806459	A	T	SNP	LOC391075	XR_016557	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HSD3B1	3283	genome.wustl.edu	36	1	119858714	119858714	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119858714	119858714	G	T	SNP	HSD3B1	NM_000862	human	genbank	54_36p	1	validated	missense	c.1045	p.A349S	1	superfamily_NAD(P)-bd	"superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD"	-	no_errors
MFN2	9927	genome.wustl.edu	36	1	11988549	11988549	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	11988549	11988549	C	T	SNP	MFN2	NM_014874	human	genbank	54_36p	1	reviewed	missense	c.1690	p.R564W	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin"	-	no_errors
LOC391081	391081	genome.wustl.edu	36	1	119953103	119953103	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119953103	119953103	T	A	SNP	LOC391081	XR_017445	human	genbank	54_36p	1	model	rna	NULL	NULL	0.07	-	-	-	pseudogene
ZNF697	90874	genome.wustl.edu	36	1	119970088	119970088	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	119970088	119970088	C	T	SNP	ZNF697	NM_001080470	human	genbank	54_36p	-1	provisional	silent	c.159	p.P53	0	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
HMGCS2	3158	genome.wustl.edu	36	1	120097460	120097460	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	120097460	120097460	G	A	SNP	HMGCS2	NM_005518	human	genbank	54_36p	-1	validated	silent	c.1260	p.F420	0.96	"HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like"	"HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like,PatternScan_HMG_COA_SYNTHASE,HMMPfam_HMG_CoA_synt_C"	-	no_errors
MIIP	60672	genome.wustl.edu	36	1	12012533	12012533	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	12012533	12012533	C	T	SNP	IIP45	NM_021933	human	genbank	54_36p	1	validated	silent	c.840	p.H280	0.32	NULL	NULL	-	no_errors
REG4	83998	genome.wustl.edu	36	1	120138772	120138772	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	120138772	120138772	G	A	SNP	REG4	NM_032044	human	genbank	54_36p	-1	validated	nonsense	c.469	p.R157*	0.02	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
NOTCH2	4853	genome.wustl.edu	36	1	120292618	120292618	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	120292618	120292618	T	C	SNP	NOTCH2	NM_024408	human	genbank	54_36p	-1	reviewed	silent	c.2694	p.E898	0.71	"superfamily_SSF57196,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
PRAMEF12	390999	genome.wustl.edu	36	1	12757692	12757692	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	12757692	12757692	C	G	SNP	PRAMEF12	NM_001080830	human	genbank	54_36p	1	provisional	missense	c.95	p.P32R	0.18	NULL	superfamily_SSF52047	-	no_errors
PRAMEF12	390999	genome.wustl.edu	36	1	12759868	12759868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	12759868	12759868	C	A	SNP	PRAMEF12	NM_001080830	human	genbank	54_36p	1	provisional	missense	c.991	p.L331M	0.03	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF4	400735	genome.wustl.edu	36	1	12864794	12864794	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	12864794	12864794	A	G	SNP	PRAMEF4	NM_001009611	human	genbank	54_36p	-1	validated	missense	c.343	p.W115R	0.09	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF20	645425	genome.wustl.edu	36	1	13615538	13615538	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	13615538	13615538	G	C	SNP	PRAMEF20	NM_001099852	human	genbank	54_36p	1	provisional	missense	c.140	p.R47T	0	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PPIAL4G	644591	genome.wustl.edu	36	1	142558964	142558964	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	142558964	142558964	C	T	SNP	PPIAL4G	ENST00000369380	human	ensembl	54_36p	-1	known	silent	c.408	p.V136	1	"superfamily_CSA_PPIase,HMMPfam_Pro_isomerase"	"superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
NOTCH2NL	388677	genome.wustl.edu	36	1	143984619	143984619	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	143984619	143984619	C	A	SNP	NOTCH2NL	NM_203458	human	genbank	54_36p	1	validated	missense	c.116	p.T39N	1	"HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF"	"PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL"	-	no_errors
TXNIP	10628	genome.wustl.edu	36	1	144151420	144151420	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144151420	144151420	A	G	SNP	TXNIP	NM_006472	human	genbank	54_36p	1	validated	missense	c.497	p.K166R	1	superfamily_Ig_E-set	"superfamily_Ig_E-set,HMMPfam_Arrestin_N,HMMPfam_Arrestin_C"	-	no_errors
TXNIP	10628	genome.wustl.edu	36	1	144151427	144151427	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144151427	144151427	T	A	SNP	TXNIP	NM_006472	human	genbank	54_36p	1	validated	silent	c.504	p.V168	1	superfamily_Ig_E-set	"HMMPfam_Arrestin_N,HMMPfam_Arrestin_C,superfamily_Ig_E-set"	-	no_errors
LIX1L	128077	genome.wustl.edu	36	1	144209961	144209961	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	144209961	144209961	G	C	SNP	LIX1L	NM_153713	human	genbank	54_36p	1	provisional	missense	c.840	p.W280C	1	NULL	NULL	-	no_errors
ITGA10	8515	genome.wustl.edu	36	1	144247129	144247129	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144247129	144247129	G	C	SNP	ITGA10	NM_003637	human	genbank	54_36p	1	reviewed	missense	c.1960	p.V654L	0	"HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	-	no_errors
ANKRD35	148741	genome.wustl.edu	36	1	144272487	144272487	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144272487	144272487	C	G	SNP	ANKRD35	NM_144698	human	genbank	54_36p	1	validated	missense	c.818	p.P273R	0.45	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKRD35	148741	genome.wustl.edu	36	1	144273633	144273633	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144273633	144273633	A	T	SNP	ANKRD35	NM_144698	human	genbank	54_36p	1	validated	missense	c.1964	p.E655V	0.51	NULL	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
POLR3C	10623	genome.wustl.edu	36	1	144319562	144319562	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	144319562	144319562	A	G	SNP	POLR3C	NM_006468	human	genbank	54_36p	-1	provisional	silent	c.492	p.P164	0.09	HMMPfam_RNA_pol_Rpc82	"HMMPfam_RNA_pol_Rpc82,HMMPfam_HTH_9"	-	no_errors
FMO5	2330	genome.wustl.edu	36	1	145163196	145163196	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	T	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	145163196	145163196	G	T	SNP	FMO5	NM_001461	human	genbank	54_36p	-1	reviewed	missense	c.50	p.S17Y	0.01	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
CHD1L	9557	genome.wustl.edu	36	1	145233735	145233735	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145233735	145233735	G	A	SNP	CHD1L	NM_004284	human	genbank	54_36p	1	validated	splice_site	c.2616-1	e23-1	1	-	-	-	no_errors
BCL9	607	genome.wustl.edu	36	1	145558344	145558344	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	G	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA		dbGAP	Illumina GAIIx	1	145558344	145558344	C	G	SNP	BCL9	NM_004326	human	genbank	54_36p	1	reviewed	missense	c.1759	p.L587V	1	NULL	NULL	-	no_errors
BCL9	607	genome.wustl.edu	36	1	145559255	145559255	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145559255	145559255	G	T	SNP	BCL9	NM_004326	human	genbank	54_36p	1	reviewed	silent	c.2670	p.S890	0.97	NULL	NULL	-	no_errors
ACP6	51205	genome.wustl.edu	36	1	145593003	145593004	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	145593003	145593004	-	A	INS	ACP6	NM_016361	human	genbank	54_36p	-1	validated	frame_shift_ins	c.710_709	p.D237fs	0.040:0.058	"superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A"	"superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1"	-	no_errors
ACP6	51205	genome.wustl.edu	36	1	145593008	145593008	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145593008	145593008	C	A	SNP	ACP6	NM_016361	human	genbank	54_36p	-1	validated	silent	c.705	p.V235	0.78	"HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like"	"HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_Phosphoglycerate mutase-like"	-	no_errors
ACP6	51205	genome.wustl.edu	36	1	145598404	145598404	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145598404	145598404	G	A	SNP	ACP6	NM_016361	human	genbank	54_36p	-1	validated	silent	c.330	p.Y110	0.36	"HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like"	"HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_Phosphoglycerate mutase-like"	-	no_errors
GJA8	2703	genome.wustl.edu	36	1	145847875	145847875	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145847875	145847875	A	G	SNP	GJA8	NM_005267	human	genbank	54_36p	1	validated	missense	c.1169	p.K390R	0.44	NULL	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin50"	-	no_errors
HIST2H3PS2	440686	genome.wustl.edu	36	1	147667142	147667142	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	147667142	147667142	G	A	SNP	HIST2H3PS2	ENST00000369176	human	ensembl	54_36p	-1	known	missense	c.25	p.R9C	1	superfamily_Histone-fold	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_H3,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
FCGR1A	2209	genome.wustl.edu	36	1	148028407	148028407	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148028407	148028407	T	C	SNP	FCGR1A	NM_000566	human	genbank	54_36p	1	reviewed	missense	c.733	p.Y245H	0.58	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
HIST2H2BE	8349	genome.wustl.edu	36	1	148124586	148124586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148124586	148124586	C	G	SNP	HIST2H2BE	NM_003528	human	genbank	54_36p	-1	reviewed	missense	c.229	p.E77Q	1	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone"	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST2H2AB	317772	genome.wustl.edu	36	1	148125788	148125788	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148125788	148125788	G	T	SNP	HIST2H2AB	NM_175065	human	genbank	54_36p	-1	reviewed	silent	c.303	p.V101	1	"superfamily_Histone-fold,HMMSmart_H2A"	"superfamily_Histone-fold,HMMSmart_H2A,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
BOLA1	51027	genome.wustl.edu	36	1	148138293	148138293	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148138293	148138293	G	C	SNP	BOLA1	NM_016074	human	genbank	54_36p	1	validated	missense	c.57	p.L19F	0.05	superfamily_BolA-like	"superfamily_BolA-like,HMMPfam_BolA"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148147385	148147385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148147385	148147385	C	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	missense	c.1362	p.W454C	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_2"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148147730	148147730	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148147730	148147730	C	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	silent	c.1197	p.T399	0.01	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148147977	148147977	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148147977	148147977	T	G	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	silent	c.1179	p.S393	0.99	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148149002	148149002	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148149002	148149002	C	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	missense	c.955	p.G319W	1	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SV2A	9900	genome.wustl.edu	36	1	148151531	148151531	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148151531	148151531	G	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	silent	c.486	p.G162	1	superfamily_MFS general substrate transporter	"PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
MTMR11	10903	genome.wustl.edu	36	1	148174218	148174218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148174218	148174218	C	G	SNP	MTMR11	ENST00000361405	human	ensembl	54_36p	-1	known	missense	c.84	p.E28D	1	superfamily_PH domain-like	superfamily_PH domain-like	-	no_start_codon
CA14	23632	genome.wustl.edu	36	1	148501180	148501180	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148501180	148501180	G	A	SNP	CA14	NM_012113	human	genbank	54_36p	1	reviewed	splice_site	c.257-1	e4-1	1	-	-	-	no_errors
APH1A	51107	genome.wustl.edu	36	1	148507029	148507029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148507029	148507029	G	C	SNP	APH1A	NM_001077628	human	genbank	54_36p	-1	validated	missense	c.236	p.S79C	1	HMMPfam_Aph-1	HMMPfam_Aph-1	-	no_errors
PRPF3	9129	genome.wustl.edu	36	1	148574237	148574237	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148574237	148574237	C	A	SNP	PRPF3	NM_004698	human	genbank	54_36p	1	reviewed	missense	c.936	p.D312E	1	HMMPfam_PRP3	"superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI,HMMPfam_PRP3"	-	no_errors
ADAMTSL4	54507	genome.wustl.edu	36	1	148794658	148794658	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148794658	148794658	G	A	SNP	ADAMTSL4	NM_019032	human	genbank	54_36p	1	reviewed	missense	c.1364	p.R455H	0.94	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
GOLPH3L	55204	genome.wustl.edu	36	1	148900984	148900984	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148900984	148900984	A	T	SNP	GOLPH3L	NM_018178	human	genbank	54_36p	-1	reviewed	missense	c.360	p.D120E	1	HMMPfam_GPP34	HMMPfam_GPP34	-	no_errors
HORMAD1	84072	genome.wustl.edu	36	1	148945692	148945692	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148945692	148945692	C	G	SNP	HORMAD1	NM_032132	human	genbank	54_36p	-1	provisional	missense	c.765	p.R255S	0.94	NULL	"superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA"	-	no_errors
HORMAD1	84072	genome.wustl.edu	36	1	148947432	148947432	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	148947432	148947432	A	T	SNP	HORMAD1	NM_032132	human	genbank	54_36p	-1	provisional	silent	c.471	p.I157	1	"HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2"	"HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2"	-	no_errors
SETDB1	9869	genome.wustl.edu	36	1	149188556	149188556	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149188556	149188556	C	G	SNP	SETDB1	NM_012432	human	genbank	54_36p	1	reviewed	missense	c.1511	p.S504C	1	NULL	"HMMSmart_TUDOR,HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET"	-	no_errors
SCNM1	79005	genome.wustl.edu	36	1	149407395	149407395	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149407395	149407395	C	A	SNP	SCNM1	NM_024041	human	genbank	54_36p	1	validated	missense	c.550	p.P184T	0.97	NULL	NULL	-	no_errors
TMOD4	29765	genome.wustl.edu	36	1	149410549	149410549	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149410549	149410549	C	A	SNP	TMOD4	NM_013353	human	genbank	54_36p	-1	validated	missense	c.710	p.G237V	1	"HMMPfam_Tropomodulin,superfamily_RNI-like"	"HMMPfam_Tropomodulin,superfamily_RNI-like"	-	no_errors
PIP5K1A	8394	genome.wustl.edu	36	1	149471789	149471789	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149471789	149471789	C	G	SNP	PIP5K1A	NM_003557	human	genbank	54_36p	1	validated	missense	c.586	p.P196A	1	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	no_errors
ZNF687	57592	genome.wustl.edu	36	1	149525896	149525896	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149525896	149525896	G	A	SNP	ZNF687	NM_020832	human	genbank	54_36p	1	provisional	missense	c.505	p.E169K	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
PI4KB	5298	genome.wustl.edu	36	1	149555082	149555082	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149555082	149555082	A	C	SNP	PI4KB	NM_002651	human	genbank	54_36p	-1	provisional	missense	c.536	p.F179C	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
RFX5	5993	genome.wustl.edu	36	1	149581309	149581309	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149581309	149581309	C	T	SNP	RFX5	NM_000449	human	genbank	54_36p	-1	reviewed	missense	c.1828	p.D610N	1	NULL	"HMMPfam_RFX_DNA_binding,superfamily_SSF46785"	-	no_errors
PSMB4	5692	genome.wustl.edu	36	1	149639206	149639206	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149639206	149639206	G	T	SNP	PSMB4	NM_002796	human	genbank	54_36p	1	reviewed	missense	c.266	p.R89L	0.96	"superfamily_SSF56235,HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	"superfamily_SSF56235,HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
POGZ	23126	genome.wustl.edu	36	1	149644636	149644636	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149644636	149644636	C	A	SNP	POGZ	NM_015100	human	genbank	54_36p	-1	reviewed	missense	c.3499	p.G1167C	1	HMMPfam_DDE	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMPfam_CenpB-DNA-bind,superfamily_Homeodomain-like,HMMSmart_SM00674,HMMPfam_DDE"	-	no_errors
POGZ	23126	genome.wustl.edu	36	1	149667379	149667379	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149667379	149667379	G	C	SNP	POGZ	NM_015100	human	genbank	54_36p	-1	reviewed	missense	c.703	p.L235V	1	NULL	"HMMPfam_DDE,HMMSmart_SM00674,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CGN	57530	genome.wustl.edu	36	1	149774954	149774954	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149774954	149774954	G	A	SNP	CGN	NM_020770	human	genbank	54_36p	1	validated	silent	c.3153	p.E1051	0.97	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_tail_1	-	no_errors
CGN	57530	genome.wustl.edu	36	1	149775932	149775932	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	149775932	149775932	G	A	SNP	CGN	NM_020770	human	genbank	54_36p	1	validated	missense	c.3409	p.E1137K	1	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_tail_1	-	no_errors
THEM5	284486	genome.wustl.edu	36	1	150090247	150090247	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150090247	150090247	C	A	SNP	THEM5	NM_182578	human	genbank	54_36p	-1	validated	nonsense	c.370	p.G124*	0.97	superfamily_SSF54637	"superfamily_SSF54637,HMMPfam_4HBT"	-	no_errors
TCHHL1	126637	genome.wustl.edu	36	1	150326132	150326132	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150326132	150326132	T	A	SNP	TCHHL1	NM_001008536	human	genbank	54_36p	-1	provisional	missense	c.650	p.K217M	0	NULL	"PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100"	-	no_errors
TCHH	7062	genome.wustl.edu	36	1	150346934	150346934	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150346934	150346934	T	C	SNP	TCHH	NM_007113	human	genbank	54_36p	-1	provisional	missense	c.5383	p.R1795G	0.03	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1"	-	no_errors
TCHH	7062	genome.wustl.edu	36	1	150348232	150348232	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150348232	150348232	A	T	SNP	TCHH	NM_007113	human	genbank	54_36p	-1	provisional	missense	c.4085	p.F1362Y	0	NULL	"PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
HRNR	388697	genome.wustl.edu	36	1	150453461	150453461	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	150453461	150453461	C	T	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	missense	c.7268	p.R2423Q	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150542311	150542311	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150542311	150542311	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.11675	p.R3892Q	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150543537	150543537	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150543537	150543537	T	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.10449	p.R3483S	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150544733	150544733	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150544733	150544733	C	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.9253	p.G3085R	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150545961	150545961	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	150545961	150545961	A	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.8025	p.A2675	0	HMMPfam_Filaggrin	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150547933	150547933	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150547933	150547933	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.6053	p.R2018K	0	HMMPfam_Filaggrin	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150553539	150553539	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150553539	150553539	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.447	p.G149	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150591310	150591310	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150591310	150591310	T	G	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.5576	p.Q1859P	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150592525	150592525	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150592525	150592525	T	C	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.4361	p.H1454R	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150593530	150593530	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150593530	150593530	C	A	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.3356	p.G1119V	0.03	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150594500	150594500	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150594500	150594500	G	T	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.2386	p.Q796K	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	genome.wustl.edu	36	1	150595558	150595558	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150595558	150595558	T	A	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.1328	p.E443V	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
CRNN	49860	genome.wustl.edu	36	1	150650016	150650016	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150650016	150650016	C	T	SNP	CRNN	NM_016190	human	genbank	54_36p	-1	reviewed	missense	c.166	p.E56K	0.98	"superfamily_SSF47473,HMMPfam_efhand"	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
LCE3E	353145	genome.wustl.edu	36	1	150805082	150805082	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150805082	150805082	C	T	SNP	LCE3E	NM_178435	human	genbank	54_36p	-1	validated	missense	c.227	p.G76D	0.43	NULL	NULL	-	no_errors
KPRP	448834	genome.wustl.edu	36	1	150998716	150998716	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	150998716	150998716	C	T	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	missense	c.28	p.R10C	0.01	NULL	NULL	-	no_errors
KPRP	448834	genome.wustl.edu	36	1	151000349	151000349	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151000349	151000349	G	A	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	missense	c.1661	p.R554Q	0.01	NULL	NULL	-	no_errors
LCE1A	353131	genome.wustl.edu	36	1	151066620	151066620	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151066620	151066620	C	T	SNP	LCE1A	NM_178348	human	genbank	54_36p	1	validated	silent	c.48	p.C16	0.86	NULL	NULL	-	no_errors
IVL	3713	genome.wustl.edu	36	1	151149202	151149202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151149202	151149202	A	C	SNP	IVL	NM_005547	human	genbank	54_36p	1	reviewed	missense	c.305	p.E102A	0	NULL	"PatternScan_INVOLUCRIN,HMMPfam_Involucrin_N,HMMPfam_Involucrin"	-	no_errors
LELP1	149018	genome.wustl.edu	36	1	151444086	151444086	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151444086	151444086	C	T	SNP	LELP1	NM_001010857	human	genbank	54_36p	1	provisional	silent	c.279	p.P93	0.95	NULL	NULL	-	no_errors
PGLYRP3	114771	genome.wustl.edu	36	1	151549717	151549717	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151549717	151549717	C	T	SNP	PGLYRP3	NM_052891	human	genbank	54_36p	-1	provisional	missense	c.49	p.A17T	0.02	NULL	"superfamily_Amidase_2,HMMSmart_PGRP,HMMPfam_Amidase_2,HMMSmart_Ami_2"	-	no_errors
PGLYRP4	57115	genome.wustl.edu	36	1	151584401	151584401	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151584401	151584401	G	A	SNP	PGLYRP4	NM_020393	human	genbank	54_36p	-1	validated	missense	c.221	p.T74M	0	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	-	no_errors
NPR1	4881	genome.wustl.edu	36	1	151926302	151926302	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	151926302	151926302	C	A	SNP	NPR1	NM_000906	human	genbank	54_36p	1	validated	silent	c.1938	p.G646	0.76	"HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
INTS3	65123	genome.wustl.edu	36	1	152009314	152009314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152009314	152009314	G	C	SNP	INTS3	NM_023015	human	genbank	54_36p	1	validated	missense	c.2406	p.W802C	1	NULL	HMMPfam_DUF2356	-	no_errors
SLC27A3	11000	genome.wustl.edu	36	1	152017344	152017344	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152017344	152017344	C	A	SNP	SLC27A3	NM_024330	human	genbank	54_36p	1	provisional	silent	c.1386	p.R462	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
DENND4B	9909	genome.wustl.edu	36	1	152169831	152169831	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152169831	152169831	T	A	SNP	DENND4B	NM_014856	human	genbank	54_36p	-1	validated	missense	c.4241	p.E1414V	1	NULL	"HMMSmart_uDENN,HMMPfam_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_PPR"	-	no_errors
DENND4B	9909	genome.wustl.edu	36	1	152170166	152170167	+	Splice_Site	INS	-	-	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152170166	152170167	-	G	INS	DENND4B	NM_014856	human	genbank	54_36p	-1	validated	splice_site_ins	c.3997-3_3997-2	e24-2	0.995:0.981	-	-	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152262372	152262372	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152262372	152262372	A	T	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.4148	p.V1383E	0.99	NULL	"superfamily_Invasin_intimin,HMMSmart_BID_2,HMMPfam_Big_2"	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152285218	152285218	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152285218	152285218	C	A	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.3647	p.W1216L	1	NULL	"HMMPfam_Big_2,HMMSmart_BID_2,superfamily_Invasin_intimin"	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152299686	152299686	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152299686	152299686	T	G	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.2804	p.Q935P	0.11	NULL	"HMMPfam_Big_2,HMMSmart_BID_2,superfamily_Invasin_intimin"	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152365549	152365549	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152365549	152365549	T	C	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	silent	c.1200	p.T400	0	NULL	"HMMPfam_Big_2,HMMSmart_BID_2,superfamily_Invasin_intimin"	-	no_errors
UBAP2L	9898	genome.wustl.edu	36	1	152490376	152490376	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152490376	152490376	G	C	SNP	UBAP2L	NM_014847	human	genbank	54_36p	1	validated	missense	c.1449	p.Q483H	1	NULL	"HMMPfam_UBA,HMMSmart_SM00165"	-	no_errors
KIAA1026	23254	genome.wustl.edu	36	1	15264712	15264712	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15264712	15264712	G	T	SNP	KIAA1026	NM_201628	human	genbank	54_36p	1	validated	splice_site	c.1099-1	e8-1	1	-	-	-	no_errors
IL6R	3570	genome.wustl.edu	36	1	152673740	152673740	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	152673740	152673740	G	A	SNP	IL6R	NM_000565	human	genbank	54_36p	1	reviewed	missense	c.580	p.V194I	0.05	"superfamily_Fibronectin type III,HMMPfam_IL6Ra-bind"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMPfam_IL6Ra-bind,PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
SHC1	6464	genome.wustl.edu	36	1	153209367	153209367	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153209367	153209367	G	A	SNP	SHC1	NM_183001	human	genbank	54_36p	-1	validated	missense	c.260	p.A87V	0.1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
FLAD1	80308	genome.wustl.edu	36	1	153227424	153227424	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153227424	153227424	G	C	SNP	FLAD1	NM_025207	human	genbank	54_36p	1	reviewed	missense	c.592	p.E198Q	0.31	"superfamily_Molybdenum cofactor biosynthesis proteins,HMMPfam_MoCF_biosynth"	"PatternScan_CARBAMOYLTRANSFERASE,superfamily_Molybdenum cofactor biosynthesis proteins,HMMPfam_MoCF_biosynth,superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_PAPS_reduct"	-	no_errors
DCST2	127579	genome.wustl.edu	36	1	153269192	153269192	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153269192	153269192	A	C	SNP	DCST2	NM_144622	human	genbank	54_36p	-1	validated	missense	c.1169	p.I390S	1	HMMPfam_DC_STAMP	HMMPfam_DC_STAMP	-	no_errors
ADAM15	8751	genome.wustl.edu	36	1	153296343	153296343	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153296343	153296343	C	T	SNP	ADAM15	NM_207197	human	genbank	54_36p	1	reviewed	missense	c.1204	p.L402F	0.99	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
RAG1AP1	55974	genome.wustl.edu	36	1	153377158	153377158	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153377158	153377158	G	A	SNP	RAG1AP1	NM_018845	human	genbank	54_36p	1	validated	nonsense	c.524	p.W175*	1	HMMPfam_MtN3_slv	HMMPfam_MtN3_slv	-	no_errors
TRIM46	80128	genome.wustl.edu	36	1	153421128	153421128	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153421128	153421128	C	G	SNP	TRIM46	NM_025058	human	genbank	54_36p	1	validated	missense	c.1765	p.Q589E	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
SCAMP3	10067	genome.wustl.edu	36	1	153492747	153492747	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	153492747	153492747	G	A	SNP	SCAMP3	NM_005698	human	genbank	54_36p	-1	reviewed	nonsense	c.985	p.R329*	1	NULL	HMMPfam_SCAMP	-	no_errors
HCN3	57657	genome.wustl.edu	36	1	153520961	153520961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153520961	153520961	C	T	SNP	HCN3	NM_020897	human	genbank	54_36p	1	validated	missense	c.878	p.S293L	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding"	-	no_errors
ASH1L	55870	genome.wustl.edu	36	1	153614790	153614792	+	In_Frame_Del	DEL	TCA	TCA	-	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	TCA	TCA	TCA	-	TCA	TCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153614790	153614792	TCA	-	DEL	ASH1L	NM_018489	human	genbank	54_36p	-1	reviewed	in_frame_del	c.6238_6236	p.D2079in_frame_del	1.000:1.000:1.000	superfamily_SET domain	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[153614696,153614804])"	no_errors
YY1AP1	55249	genome.wustl.edu	36	1	153905118	153905118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153905118	153905118	G	C	SNP	YY1AP1	NM_139118	human	genbank	54_36p	-1	reviewed	missense	c.941	p.T314S	0.12	NULL	NULL	-	no_errors
GON4L	54856	genome.wustl.edu	36	1	153993466	153993466	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	153993466	153993466	C	T	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	silent	c.5424	p.L1808	1	NULL	"superfamily_PAH2 domain,HMMPfam_PAH,superfamily_Homeodomain-like"	-	no_errors
LMNA	4000	genome.wustl.edu	36	1	154363312	154363312	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154363312	154363312	C	T	SNP	LMNA	ENST00000368297	human	ensembl	54_36p	1	known	missense	c.95	p.A32V	0.1	NULL	"HMMPfam_Filament,PatternScan_IF,superfamily_SSF74853,HMMPfam_IF_tail"	-	no_errors
LMNA	4000	genome.wustl.edu	36	1	154370932	154370932	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154370932	154370932	A	G	SNP	LMNA	NM_170707	human	genbank	54_36p	1	reviewed	missense	c.628	p.I210V	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	-	no_errors
LMNA	4000	genome.wustl.edu	36	1	154371347	154371347	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154371347	154371347	T	G	SNP	LMNA	NM_170707	human	genbank	54_36p	1	reviewed	missense	c.767	p.V256G	1	HMMPfam_Filament	"HMMPfam_IF_tail,HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain"	-	no_errors
SMG5	23381	genome.wustl.edu	36	1	154499939	154499939	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154499939	154499939	G	A	SNP	SMG5	NM_015327	human	genbank	54_36p	-1	validated	silent	c.1902	p.R634	0.46	NULL	"HMMPfam_EST1,HMMSmart_PINc"	-	no_errors
VHLL	391104	genome.wustl.edu	36	1	154535367	154535367	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154535367	154535367	A	C	SNP	VHLL	NM_001004319	human	genbank	54_36p	-1	provisional	missense	c.238	p.Y80D	0.53	"HMMPfam_VHL,superfamily_SSF49468"	"HMMPfam_VHL,superfamily_SSF49468"	-	no_errors
MEF2D	4209	genome.wustl.edu	36	1	154718872	154718872	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154718872	154718872	G	C	SNP	MEF2D	NM_005920	human	genbank	54_36p	-1	provisional	missense	c.239	p.T80S	1	superfamily_SRF-like	"HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF"	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154788499	154788499	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154788499	154788499	G	C	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	silent	c.1461	p.A487	0.95	NULL	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C"	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154799639	154799639	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154799639	154799639	G	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	silent	c.709	p.L237	1	NULL	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RasGAP_C,HMMPfam_CH,HMMSmart_CH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_Calponin-homology,superfamily_SSF52540"	-	no_errors
NES	10763	genome.wustl.edu	36	1	154906180	154906180	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154906180	154906180	C	T	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.4424	p.G1475D	0	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
NES	10763	genome.wustl.edu	36	1	154907174	154907174	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	154907174	154907174	G	T	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.3430	p.L1144I	0	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
INSRR	3645	genome.wustl.edu	36	1	155090326	155090326	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155090326	155090326	G	C	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.479	p.P160R	0.58	superfamily_SSF52058	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	genome.wustl.edu	36	1	155104547	155104547	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155104547	155104547	T	C	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	silent	c.456	p.C152	1	"superfamily_L domain-like,HMMSmart_SM00082"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	genome.wustl.edu	36	1	155115634	155115634	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155115634	155115634	C	T	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	silent	c.1902	p.V634	0.99	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
C1orf92	149499	genome.wustl.edu	36	1	155164045	155164045	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155164045	155164045	G	A	SNP	C1orf92	NM_144702	human	genbank	54_36p	1	validated	missense	c.151	p.D51N	1	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
ARHGEF11	9826	genome.wustl.edu	36	1	155176012	155176012	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155176012	155176012	C	T	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	missense	c.4048	p.D1350N	0.14	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,HMMSmart_RGS,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
ARHGEF11	9826	genome.wustl.edu	36	1	155192962	155192962	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155192962	155192962	G	A	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	silent	c.1545	p.A515	1	"HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam"	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729"	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155764297	155764297	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155764297	155764297	C	T	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	missense	c.1694	p.R565H	0.75	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL5	83416	genome.wustl.edu	36	1	155779292	155779292	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155779292	155779292	A	C	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	silent	c.1104	p.A368	0	"HMMSmart_SM00409,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FCRL4	83417	genome.wustl.edu	36	1	155824329	155824329	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155824329	155824329	C	A	SNP	FCRL4	NM_031282	human	genbank	54_36p	-1	provisional	missense	c.512	p.G171V	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL3	115352	genome.wustl.edu	36	1	155915181	155915181	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155915181	155915181	T	C	SNP	FCRL3	NM_052939	human	genbank	54_36p	-1	reviewed	silent	c.2148	p.E716	0.04	NULL	"superfamily_Immunoglobulin,PatternScan_N6_MTASE,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL3	115352	genome.wustl.edu	36	1	155933778	155933778	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	155933778	155933778	A	T	SNP	FCRL3	NM_052939	human	genbank	54_36p	-1	reviewed	missense	c.620	p.M207K	0.91	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FCRL1	115350	genome.wustl.edu	36	1	156038510	156038510	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156038510	156038510	A	G	SNP	FCRL1	NM_052938	human	genbank	54_36p	-1	provisional	silent	c.705	p.S235	0.52	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL1	115350	genome.wustl.edu	36	1	156040398	156040398	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156040398	156040398	G	A	SNP	FCRL1	NM_052938	human	genbank	54_36p	-1	provisional	silent	c.180	p.A60	0	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
KIRREL	55243	genome.wustl.edu	36	1	156327870	156327870	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156327870	156327870	C	T	SNP	KIRREL	NM_018240	human	genbank	54_36p	1	validated	silent	c.879	p.T293	1	"superfamily_SSF48726,HMMSmart_IG"	"superfamily_SSF48726,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG"	-	no_errors
CD1C	911	genome.wustl.edu	36	1	156529153	156529153	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156529153	156529153	G	T	SNP	CD1C	NM_001765	human	genbank	54_36p	1	reviewed	missense	c.754	p.G252C	0	"superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1"	"superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1"	-	no_errors
CD1B	910	genome.wustl.edu	36	1	156565786	156565786	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156565786	156565786	C	A	SNP	CD1B	NM_001764	human	genbank	54_36p	-1	reviewed	missense	c.884	p.W295L	0.99	superfamily_Immunoglobulin	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	-	no_errors
CELA2A	63036	genome.wustl.edu	36	1	15665172	15665172	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15665172	15665172	C	T	SNP	ELA2A	NM_033440	human	genbank	54_36p	1	reviewed	silent	c.585	p.S195	0.07	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
OR10K1	391109	genome.wustl.edu	36	1	156702418	156702418	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156702418	156702418	C	A	SNP	OR10K1	NM_001004473	human	genbank	54_36p	1	provisional	missense	c.443	p.A148D	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
CELA2B	51032	genome.wustl.edu	36	1	15680218	15680218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15680218	15680218	C	G	SNP	ELA2B	NM_015849	human	genbank	54_36p	1	reviewed	missense	c.168	p.H56Q	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
OR10X1	128367	genome.wustl.edu	36	1	156816153	156816153	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156816153	156816153	G	T	SNP	OR10X1	NM_001004477	human	genbank	54_36p	-1	provisional	missense	c.161	p.T54N	0.02	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156850149	156850149	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156850149	156850149	A	C	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	silent	c.6975	p.A2325	0.79	superfamily_EF-hand	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen"	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156873163	156873163	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156873163	156873163	T	C	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.5202	p.I1734M	0.32	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
SPTA1	6708	genome.wustl.edu	36	1	156904273	156904273	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156904273	156904273	T	G	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.2037	p.K679N	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
OR6K3	391114	genome.wustl.edu	36	1	156954197	156954197	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	156954197	156954197	C	G	SNP	OR6K3	NM_001005327	human	genbank	54_36p	-1	provisional	missense	c.381	p.E127D	0	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR6N1	128372	genome.wustl.edu	36	1	157002280	157002280	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157002280	157002280	C	A	SNP	OR6N1	NM_001005185	human	genbank	54_36p	-1	provisional	missense	c.817	p.A273S	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MNDA	4332	genome.wustl.edu	36	1	157078761	157078761	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157078761	157078761	T	G	SNP	MNDA	NM_002432	human	genbank	54_36p	1	reviewed	missense	c.194	p.L65R	0	HMMPfam_PAAD_DAPIN	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
MNDA	4332	genome.wustl.edu	36	1	157085639	157085639	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157085639	157085639	G	A	SNP	MNDA	NM_002432	human	genbank	54_36p	1	reviewed	missense	c.1212	p.M404I	0	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
PYHIN1	149628	genome.wustl.edu	36	1	157175519	157175519	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157175519	157175519	A	G	SNP	PYHIN1	NM_152501	human	genbank	54_36p	1	validated	missense	c.437	p.E146G	0	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
PYHIN1	149628	genome.wustl.edu	36	1	157180391	157180391	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157180391	157180391	A	T	SNP	PYHIN1	NM_152501	human	genbank	54_36p	1	validated	missense	c.1190	p.Q397L	0.11	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
PYHIN1	149628	genome.wustl.edu	36	1	157181450	157181450	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157181450	157181450	C	G	SNP	PYHIN1	NM_152501	human	genbank	54_36p	1	validated	missense	c.1353	p.F451L	0.01	NULL	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
IFI16	3428	genome.wustl.edu	36	1	157290096	157290096	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157290096	157290096	G	A	SNP	IFI16	NM_005531	human	genbank	54_36p	1	reviewed	silent	c.2067	p.G689	0	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
DARC	2532	genome.wustl.edu	36	1	157442218	157442231	+	Frame_Shift_Del	DEL	GCACTCGCAGCTCT	GCACTCGCAGCTCT	-	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	GCACTCGCAGCTCT	GCACTCGCAGCTCT	GCACTCGCAGCTCT	-	GCACTCGCAGCTCT	GCACTCGCAGCTCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157442218	157442231	GCACTCGCAGCTCT	-	DEL	DARC	NM_002036	human	genbank	54_36p	1	reviewed	frame_shift_del	c.365_378	p.T123fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	"(deletion:cds_exon[157441875,157442864])"	no_errors
OR10J3	441911	genome.wustl.edu	36	1	157550271	157550271	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157550271	157550271	G	A	SNP	OR10J3	NM_001004467	human	genbank	54_36p	-1	provisional	missense	c.803	p.S268F	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10J1	26476	genome.wustl.edu	36	1	157602839	157602839	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	157602839	157602839	A	G	SNP	OR10J1	ENST00000328408	human	ensembl	54_36p	1	known	missense	c.265	p.S89G	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_stop_codon
FCRL6	343413	genome.wustl.edu	36	1	158051862	158051862	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158051862	158051862	G	C	SNP	FCRL6	NM_001004310	human	genbank	54_36p	1	validated	missense	c.1168	p.V390L	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
IGSF9	57549	genome.wustl.edu	36	1	158166686	158166686	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158166686	158166686	G	A	SNP	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	missense	c.1933	p.R645W	0.8	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
IGSF9	57549	genome.wustl.edu	36	1	158179380	158179380	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158179380	158179380	C	T	SNP	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	missense	c.244	p.V82M	0.99	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
SLAMF9	89886	genome.wustl.edu	36	1	158188870	158188870	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158188870	158188870	G	T	SNP	SLAMF9	NM_033438	human	genbank	54_36p	-1	provisional	missense	c.470	p.S157Y	0.02	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
PIGM	93183	genome.wustl.edu	36	1	158267377	158267377	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158267377	158267377	A	G	SNP	PIGM	NM_145167	human	genbank	54_36p	-1	reviewed	silent	c.777	p.F259	0.99	HMMPfam_Mannosyl_trans	HMMPfam_Mannosyl_trans	-	no_errors
KCNJ10	3766	genome.wustl.edu	36	1	158277963	158277963	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	158277963	158277963	G	T	SNP	KCNJ10	NM_002241	human	genbank	54_36p	-1	reviewed	missense	c.984	p.S328R	1	"HMMPfam_IRK,superfamily_E set domains"	"superfamily_Voltage-gated potassium channels,HMMPfam_IRK,superfamily_E set domains"	-	no_errors
LOC388707	388707	genome.wustl.edu	36	1	158503240	158503240	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	158503240	158503240	G	C	SNP	LOC388707	XR_017679	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RSC1A1	6248	genome.wustl.edu	36	1	15859164	15859164	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	15859164	15859164	C	G	SNP	RSC1A1	NM_006511	human	genbank	54_36p	1	provisional	missense	c.214	p.L72V	0.1	NULL	HMMSmart_UBA	-	no_errors
ITLN1	55600	genome.wustl.edu	36	1	159117595	159117595	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159117595	159117595	C	A	SNP	ITLN1	NM_017625	human	genbank	54_36p	-1	validated	silent	c.537	p.L179	0.07	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
ITLN1	55600	genome.wustl.edu	36	1	159118580	159118580	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159118580	159118580	A	T	SNP	ITLN1	NM_017625	human	genbank	54_36p	-1	validated	missense	c.196	p.Y66N	1	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
LOC646347	646347	genome.wustl.edu	36	1	159132183	159132183	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159132183	159132183	C	A	SNP	LOC646347	XR_017680	human	genbank	54_36p	1	model	rna	NULL	NULL	0.94	-	-	-	pseudogene
ITLN2	142683	genome.wustl.edu	36	1	159187017	159187017	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159187017	159187017	T	C	SNP	ITLN2	NM_080878	human	genbank	54_36p	-1	validated	missense	c.550	p.N184D	0	superfamily_Fibrinogen C-terminal domain-like	superfamily_Fibrinogen C-terminal domain-like	-	no_errors
ARHGAP30	257106	genome.wustl.edu	36	1	159285106	159285106	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159285106	159285106	G	C	SNP	ARHGAP30	NM_001025598	human	genbank	54_36p	-1	validated	missense	c.2329	p.Q777E	0.01	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP30	257106	genome.wustl.edu	36	1	159288936	159288936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159288936	159288936	G	A	SNP	ARHGAP30	NM_001025598	human	genbank	54_36p	-1	validated	silent	c.858	p.V286	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP"	-	no_errors
PVRL4	81607	genome.wustl.edu	36	1	159309176	159309176	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159309176	159309176	T	C	SNP	PVRL4	NM_030916	human	genbank	54_36p	-1	validated	missense	c.1432	p.I478V	0.99	NULL	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
USP21	27005	genome.wustl.edu	36	1	159397428	159397428	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159397428	159397428	C	T	SNP	USP21	NM_001014443	human	genbank	54_36p	1	reviewed	missense	c.374	p.A125V	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP21	27005	genome.wustl.edu	36	1	159398689	159398689	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159398689	159398689	C	T	SNP	USP21	ENST00000401988	human	ensembl	54_36p	1	known	missense	c.658	p.P220S	1	NULL	"HMMPfam_UCH,superfamily_Cysteine proteinases"	-	no_errors
MPZ	4359	genome.wustl.edu	36	1	159542580	159542580	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159542580	159542580	G	C	SNP	MPZ	NM_000530	human	genbank	54_36p	-1	reviewed	missense	c.617	p.A206G	1	HMMPfam_Myelin-PO_N	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_Myelin-PO_N,PatternScan_MYELIN_P0"	-	no_errors
LOC148430	148430	genome.wustl.edu	36	1	159643193	159643193	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	159643193	159643193	C	G	SNP	LOC148430	XR_017209	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ATF6	22926	genome.wustl.edu	36	1	160002790	160002790	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	160002790	160002790	G	A	SNP	ATF6	NM_007348	human	genbank	54_36p	1	validated	missense	c.16	p.G6R	0	NULL	"HMMSmart_BRLZ,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC"	-	no_errors
ATF6	22926	genome.wustl.edu	36	1	160088228	160088228	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	160088228	160088228	T	C	SNP	ATF6	NM_007348	human	genbank	54_36p	1	validated	missense	c.1412	p.I471T	0.18	NULL	"HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16073415	16073415	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16073415	16073415	T	C	SNP	SPEN	ENST00000375753	human	ensembl	54_36p	1	known	silent	c.219	p.Y73	1	NULL	"superfamily_SSF54928,HMMSmart_RRM"	-	no_stop_codon
SPEN	23013	genome.wustl.edu	36	1	16075631	16075631	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16075631	16075631	G	C	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	missense	c.752	p.R251T	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC"	-	no_errors
UAP1	6675	genome.wustl.edu	36	1	160835707	160835707	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	160835707	160835707	A	G	SNP	UAP1	NM_003115	human	genbank	54_36p	1	validated	missense	c.1448	p.D483G	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP"	-	no_errors
DDR2	4921	genome.wustl.edu	36	1	160989543	160989543	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	160989543	160989543	C	T	SNP	DDR2	NM_001014796	human	genbank	54_36p	1	reviewed	silent	c.117	p.G39	1	"HMMSmart_FA58C,superfamily_Gal_bind_like"	"HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
SPEN	23013	genome.wustl.edu	36	1	16129028	16129028	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16129028	16129028	G	C	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	missense	c.3706	p.D1236H	1	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928"	-	no_errors
RGS4	5999	genome.wustl.edu	36	1	161309978	161309978	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	161309978	161309978	T	A	SNP	RGS4	NM_001102445	human	genbank	54_36p	1	reviewed	missense	c.611	p.L204Q	0.97	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
NUF2	83540	genome.wustl.edu	36	1	161564699	161564699	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	161564699	161564699	A	C	SNP	NUF2	NM_031423	human	genbank	54_36p	1	reviewed	missense	c.256	p.S86R	1	HMMPfam_Nuf2	HMMPfam_Nuf2	-	no_errors
NUF2	83540	genome.wustl.edu	36	1	161585425	161585425	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	161585425	161585425	A	T	SNP	NUF2	NM_031423	human	genbank	54_36p	1	reviewed	missense	c.1191	p.E397D	0.67	NULL	HMMPfam_Nuf2	-	no_errors
CLCNKA	1187	genome.wustl.edu	36	1	16223895	16223895	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	16223895	16223895	C	T	SNP	CLCNKA	NM_004070	human	genbank	54_36p	1	reviewed	missense	c.280	p.L94F	1	superfamily_Cl-channel_core	"HMMPfam_CBS,HMMSmart_CBS,HMMPfam_Voltage_CLC,superfamily_Cl-channel_core,superfamily_SSF54631"	-	no_errors
EPHA2	1969	genome.wustl.edu	36	1	16328605	16328605	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16328605	16328605	C	G	SNP	EPHA2	NM_004431	human	genbank	54_36p	-1	reviewed	missense	c.2736	p.W912C	1	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGEF19	128272	genome.wustl.edu	36	1	16397715	16397715	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16397715	16397715	T	G	SNP	ARHGEF19	NM_153213	human	genbank	54_36p	-1	provisional	missense	c.2363	p.K788T	1	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1"	-	no_errors
UCK2	7371	genome.wustl.edu	36	1	164139129	164139129	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	164139129	164139129	T	C	SNP	UCK2	NM_012474	human	genbank	54_36p	1	reviewed	missense	c.586	p.F196L	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PRK"	-	no_errors
LOC284685	284685	genome.wustl.edu	36	1	164512962	164512962	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	164512962	164512962	C	T	SNP	LOC284685	XR_017685	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
POGK	57645	genome.wustl.edu	36	1	165086065	165086065	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165086065	165086065	C	T	SNP	POGK	NM_017542	human	genbank	54_36p	1	reviewed	missense	c.1625	p.P542L	0.29	HMMPfam_DDE	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMPfam_BrkDBD,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00674,HMMPfam_DDE"	-	no_errors
TADA1	117143	genome.wustl.edu	36	1	165098153	165098153	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165098153	165098153	G	C	SNP	TADA1L	NM_053053	human	genbank	54_36p	-1	validated	missense	c.451	p.L151V	1	NULL	NULL	-	no_errors
ILDR2	387597	genome.wustl.edu	36	1	165172558	165172558	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165172558	165172558	G	A	SNP	ILDR2	NM_199351	human	genbank	54_36p	-1	provisional	silent	c.597	p.L199	1	HMMPfam_LSR	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_LSR"	-	no_errors
DUSP27	92235	genome.wustl.edu	36	1	165362623	165362623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165362623	165362623	T	A	SNP	DUSP27	NM_001080426	human	genbank	54_36p	1	provisional	missense	c.1631	p.L544Q	1	NULL	"PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	-	no_errors
DUSP27	92235	genome.wustl.edu	36	1	165363883	165363883	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165363883	165363883	G	A	SNP	DUSP27	NM_001080426	human	genbank	54_36p	1	provisional	missense	c.2891	p.R964K	0.61	NULL	"HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_DSPc,superfamily_SSF52799"	-	no_errors
C1orf144	26099	genome.wustl.edu	36	1	16592355	16592356	+	Frame_Shift_Ins	INS	-	-	ATTGT	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	16592355	16592356	-	ATTGT	INS	C1orf144	NM_015609	human	genbank	54_36p	1	provisional	frame_shift_ins	c.90_91	p.D30fs	1.000:1.000	NULL	NULL	-	no_errors
RCSD1	92241	genome.wustl.edu	36	1	165925967	165925967	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	165925967	165925967	A	T	SNP	RCSD1	NM_052862	human	genbank	54_36p	1	validated	missense	c.256	p.I86F	1	NULL	HMMPfam_RCSD	-	no_errors
SPATA21	374955	genome.wustl.edu	36	1	16598576	16598576	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16598576	16598576	T	C	SNP	SPATA21	NM_198546	human	genbank	54_36p	-1	provisional	missense	c.1202	p.Q401R	0.99	NULL	"superfamily_SSF47473,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
MPZL1	9019	genome.wustl.edu	36	1	166001554	166001554	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	166001554	166001554	G	A	SNP	MPZL1	NM_003953	human	genbank	54_36p	1	validated	missense	c.202	p.G68R	0.16	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_errors
MPZL1	9019	genome.wustl.edu	36	1	166009187	166009187	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	166009187	166009187	C	G	SNP	MPZL1	NM_003953	human	genbank	54_36p	1	validated	missense	c.563	p.A188G	0.94	NULL	"HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
ADCY10	55811	genome.wustl.edu	36	1	166119382	166119382	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	166119382	166119382	C	T	SNP	ADCY10	NM_018417	human	genbank	54_36p	-1	validated	missense	c.937	p.A313T	0.77	superfamily_Adenylyl and guanylyl cyclase catalytic domain	"superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,superfamily_TPR-like"	-	no_errors
SPATA21	374955	genome.wustl.edu	36	1	16621066	16621066	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16621066	16621066	C	T	SNP	SPATA21	ENST00000375584	human	ensembl	54_36p	-1	known	missense	c.700	p.V234I	0	NULL	NULL	-	no_errors
F5	2153	genome.wustl.edu	36	1	167750264	167750264	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	167750264	167750264	T	A	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.6586	p.I2196F	1	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C"	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_LSPR,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
F5	2153	genome.wustl.edu	36	1	167751388	167751388	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	167751388	167751388	T	C	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.6446	p.Y2149C	1	"HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like"	"HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_LSPR,HMMPfam_Cu-oxidase_3"	-	no_errors
SELE	6401	genome.wustl.edu	36	1	167963921	167963921	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	167963921	167963921	C	A	SNP	SELE	NM_000450	human	genbank	54_36p	-1	reviewed	missense	c.1181	p.C394F	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	###############################################################################################################################################################################################################################################################	-	no_errors
BAT2L2	23215	genome.wustl.edu	36	1	169802148	169802148	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	169802148	169802148	G	C	SNP	BAT2D1	ENST00000392080	human	ensembl	54_36p	1	known	missense	c.6264	p.Q2088H	1	NULL	HMMPfam_BAT2_N	-	no_errors
CROCC	9696	genome.wustl.edu	36	1	17168359	17168359	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17168359	17168359	G	A	SNP	CROCC	NM_014675	human	genbank	54_36p	1	validated	silent	c.5238	p.R1746	1	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors
SLC9A11	284525	genome.wustl.edu	36	1	171771678	171771678	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	171771678	171771678	C	G	SNP	SLC9A11	NM_178527	human	genbank	54_36p	-1	validated	missense	c.1689	p.M563I	0.05	NULL	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,HMMPfam_Na_H_Exchanger,HMMPfam_Ion_trans,HMMSmart_cNMP,superfamily_cNMP_binding,HMMPfam_cNMP_binding"	-	no_errors
SLC9A11	284525	genome.wustl.edu	36	1	171812446	171812446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	171812446	171812446	C	T	SNP	SLC9A11	NM_178527	human	genbank	54_36p	-1	validated	silent	c.879	p.P293	0.02	HMMPfam_Na_H_Exchanger	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding"	-	no_errors
ATP13A2	23400	genome.wustl.edu	36	1	17203855	17203855	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17203855	17203855	C	A	SNP	ATP13A2	NM_022089	human	genbank	54_36p	-1	reviewed	silent	c.396	p.A132	0.07	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SERPINC1	462	genome.wustl.edu	36	1	172139768	172139768	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	172139768	172139768	G	A	SNP	SERPINC1	NM_000488	human	genbank	54_36p	-1	validated	missense	c.1277	p.S426L	1	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
RC3H1	149041	genome.wustl.edu	36	1	172220294	172220294	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	172220294	172220294	T	C	SNP	RC3H1	NM_172071	human	genbank	54_36p	-1	validated	silent	c.318	p.L106	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH"	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17269215	17269215	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17269215	17269215	G	T	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.1719	p.F573L	1	"HMMPfam_PAD,superfamily_SSF55909"	"HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909"	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17274006	17274006	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17274006	17274006	G	A	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.1481	p.T494I	1	"HMMPfam_PAD,superfamily_SSF55909"	"superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909"	-	no_errors
PADI2	11240	genome.wustl.edu	36	1	17291556	17291556	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17291556	17291556	C	T	SNP	PADI2	NM_007365	human	genbank	54_36p	-1	reviewed	missense	c.589	p.G197R	0.98	"HMMPfam_PAD_M,superfamily_PAD_central"	"superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909"	-	no_errors
TNR	7143	genome.wustl.edu	36	1	173560251	173560251	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	173560251	173560251	C	A	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	missense	c.3821	p.R1274L	1	"HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like"	"PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like"	-	no_errors
PADI3	51702	genome.wustl.edu	36	1	17472520	17472520	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	17472520	17472520	A	T	SNP	PADI3	NM_016233	human	genbank	54_36p	1	reviewed	missense	c.1146	p.K382N	0.31	"HMMPfam_PAD,superfamily_SSF55909"	"HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909"	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174931581	174931581	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	174931581	174931581	T	G	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.2709	p.C903W	1	HMMPfam_Peptidase_M43	###############################################################################################################################################################################################################################################################	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174935170	174935170	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	174935170	174935170	G	T	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.3058	p.V1020L	0.95	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PAPPA2	60676	genome.wustl.edu	36	1	174935189	174935189	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	174935189	174935189	A	G	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.3077	p.D1026G	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175104728	175104728	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175104728	175104728	C	T	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	silent	c.3522	p.Q1174	1	NULL	"HMMSmart_EGF,HMMSmart_MACPF,superfamily_FN_III-like,HMMSmart_FN3"	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175181690	175181705	+	Frame_Shift_Del	DEL	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	-	TGTTCCTTTCAGCACC	TGTTCCTTTCAGCACC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175181690	175181705	TGTTCCTTTCAGCACC	-	DEL	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	frame_shift_del	c.2244_2229	p.Q743fs	0.969:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000	NULL	"HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like"	"(deletion:cds_exon[175181685,175181879])"	no_errors
ASTN1	460	genome.wustl.edu	36	1	175259324	175259324	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175259324	175259324	C	A	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	missense	c.1277	p.R426L	1	NULL	"HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like"	-	no_errors
ASTN1	460	genome.wustl.edu	36	1	175268522	175268522	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175268522	175268522	G	C	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	silent	c.558	p.V186	0.63	NULL	"HMMSmart_MACPF,HMMSmart_FN3,HMMSmart_EGF,superfamily_FN_III-like"	-	no_errors
PADI4	23569	genome.wustl.edu	36	1	17547048	17547048	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17547048	17547048	A	T	SNP	PADI4	NM_012387	human	genbank	54_36p	1	reviewed	missense	c.1073	p.Q358L	1	"HMMPfam_PAD,superfamily_Pentein"	"HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein"	-	no_errors
FAM5B	57795	genome.wustl.edu	36	1	175517201	175517201	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	175517201	175517201	G	A	SNP	FAM5B	NM_021165	human	genbank	54_36p	1	provisional	missense	c.2266	p.V756M	1	NULL	HMMSmart_SM00457	-	no_errors
PADI4	23569	genome.wustl.edu	36	1	17558442	17558442	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	17558442	17558442	C	T	SNP	PADI4	NM_012387	human	genbank	54_36p	1	reviewed	silent	c.1710	p.L570	1	"HMMPfam_PAD,superfamily_Pentein"	"superfamily_Cupredoxins,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,superfamily_Pentein"	-	no_errors
RASAL2	9462	genome.wustl.edu	36	1	176687333	176687333	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	176687333	176687333	G	C	SNP	RASAL2	NM_170692	human	genbank	54_36p	1	reviewed	missense	c.1578	p.E526D	1	"HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP"	"HMMSmart_PH,superfamily_SSF50729,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1"	-	no_errors
FAM20B	9917	genome.wustl.edu	36	1	177279865	177279865	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	177279865	177279865	T	G	SNP	FAM20B	NM_014864	human	genbank	54_36p	1	validated	missense	c.260	p.V87G	1	NULL	HMMPfam_DUF1193	-	no_errors
FAM20B	9917	genome.wustl.edu	36	1	177300122	177300122	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	177300122	177300122	G	T	SNP	FAM20B	NM_014864	human	genbank	54_36p	1	validated	missense	c.806	p.G269V	1	HMMPfam_DUF1193	HMMPfam_DUF1193	-	no_errors
ARHGEF10L	55160	genome.wustl.edu	36	1	17823526	17823526	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	17823526	17823526	G	A	SNP	ARHGEF10L	NM_018125	human	genbank	54_36p	1	validated	missense	c.1258	p.A420T	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_WD40 repeat-like"	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178290216	178290216	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178290216	178290216	C	T	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	missense	c.5215	p.R1739W	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178290231	178290231	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178290231	178290231	G	T	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	missense	c.5230	p.G1744C	1	NULL	"HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain"	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178328483	178328483	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178328483	178328483	C	G	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	missense	c.6617	p.P2206R	0.97	NULL	"HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain"	-	no_errors
QSOX1	5768	genome.wustl.edu	36	1	178432226	178432226	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	178432226	178432226	G	A	SNP	QSOX1	NM_002826	human	genbank	54_36p	1	reviewed	missense	c.1675	p.A559T	0.01	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,superfamily_FAD-dependent thiol oxidase,HMMPfam_Evr1_Alr"	-	no_errors
KIAA1614	57710	genome.wustl.edu	36	1	179171458	179171458	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	179171458	179171458	C	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	1	validated	missense	c.1790	p.T597I	0.98	NULL	NULL	-	no_errors
STX6	10228	genome.wustl.edu	36	1	179225768	179225768	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	179225768	179225768	A	G	SNP	STX6	NM_005819	human	genbank	54_36p	-1	validated	missense	c.464	p.I155T	1	NULL	"superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	179974914	179974914	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	179974914	179974914	C	T	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	silent	c.3621	p.D1207	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1E	777	genome.wustl.edu	36	1	180034140	180034140	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180034140	180034140	G	T	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	silent	c.6360	p.P2120	0.32	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
ACTL8	81569	genome.wustl.edu	36	1	18025359	18025359	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18025359	18025359	C	A	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	missense	c.859	p.L287M	0	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN"	-	no_errors
ACTL8	81569	genome.wustl.edu	36	1	18025484	18025484	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18025484	18025484	G	C	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	missense	c.984	p.W328C	0	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	-	no_errors
ACTL8	81569	genome.wustl.edu	36	1	18025595	18025595	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18025595	18025595	G	A	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	silent	c.1095	p.R365	0	"HMMPfam_Actin,HMMSmart_ACTIN"	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	-	no_errors
TEDDM1	127670	genome.wustl.edu	36	1	180635534	180635534	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180635534	180635534	T	C	SNP	TEDDM1	NM_172000	human	genbank	54_36p	-1	validated	missense	c.710	p.K237R	0	NULL	HMMPfam_DUF716	-	no_errors
TEDDM1	127670	genome.wustl.edu	36	1	180635977	180635977	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180635977	180635977	C	G	SNP	TEDDM1	NM_172000	human	genbank	54_36p	-1	validated	missense	c.267	p.K89N	0.06	NULL	HMMPfam_DUF716	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180811317	180811317	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180811317	180811317	C	T	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.2059	p.D687N	0.23	"HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180812026	180812026	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180812026	180812026	T	C	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.2027	p.E676G	0	"HMMSmart_SM00580,HMMPfam_Ribonuc_2-5A"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00220,HMMSmart_SM00580,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like)"	-	no_errors
RNASEL	6041	genome.wustl.edu	36	1	180821901	180821901	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180821901	180821901	T	A	SNP	RNASEL	NM_021133	human	genbank	54_36p	-1	reviewed	missense	c.664	p.T222S	0	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00220,HMMSmart_SM00580,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like)"	-	no_errors
RGS8	85397	genome.wustl.edu	36	1	180883954	180883954	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	180883954	180883954	G	C	SNP	RGS8	NM_033345	human	genbank	54_36p	-1	reviewed	missense	c.355	p.L119V	1	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
DHX9	1660	genome.wustl.edu	36	1	181112227	181112227	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181112227	181112227	A	G	SNP	DHX9	NM_001357	human	genbank	54_36p	1	reviewed	silent	c.2052	p.L684	0.98	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181346371	181346371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181346371	181346371	C	G	SNP	LAMC1	NM_002293	human	genbank	54_36p	1	reviewed	missense	c.980	p.P327R	1	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_LAM_1"	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,HMMSmart_LamB,HMMPfam_Laminin_B,PatternScan_EGF_2"	-	no_errors
LAMC1	3915	genome.wustl.edu	36	1	181360492	181360492	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181360492	181360492	T	A	SNP	LAMC1	NM_002293	human	genbank	54_36p	1	reviewed	missense	c.2505	p.D835E	1	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196"	"HMMPfam_Laminin_B,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF57196"	-	no_errors
LAMC2	3918	genome.wustl.edu	36	1	181479120	181479120	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181479120	181479120	C	G	SNP	LAMC2	NM_005562	human	genbank	54_36p	1	reviewed	missense	c.3544	p.P1182A	0.98	NULL	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_1,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181796000	181796001	+	Missense_Mutation	DNP	TC	TC	GT	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	TC	TC	TC	GT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181796000	181796001	TC	GT	DNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.1322_1321	p.E441T	0.006:0.005	superfamily_SH3	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF54277,HMMPfam_PB1,HMMSmart_PB1"	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181810245	181810245	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181810245	181810245	C	G	SNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.501	p.W167C	1	superfamily_SSF48452	"HMMPfam_PB1,HMMSmart_PB1,HMMPfam_TPR_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_TPR,superfamily_SSF48452,superfamily_SSF54277"	-	no_errors
NCF2	4688	genome.wustl.edu	36	1	181810298	181810298	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	181810298	181810298	T	C	SNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.448	p.M150V	0.81	"HMMSmart_TPR,superfamily_SSF48452"	"HMMPfam_PB1,HMMSmart_PB1,HMMPfam_TPR_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_TPR,superfamily_SSF48452,superfamily_SSF54277"	-	no_errors
RGL1	23179	genome.wustl.edu	36	1	182083355	182083355	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	182083355	182083355	A	G	SNP	RGL1	NM_015149	human	genbank	54_36p	1	validated	silent	c.276	p.T92	0.98	superfamily_Ras GEF	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314"	-	no_errors
RGL1	23179	genome.wustl.edu	36	1	182147925	182147925	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	182147925	182147925	G	C	SNP	RGL1	NM_015149	human	genbank	54_36p	1	validated	missense	c.1754	p.S585T	1	NULL	"HMMPfam_RA,HMMSmart_SM00314,HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_Ubiquitin-like"	-	no_errors
FAM129A	116496	genome.wustl.edu	36	1	183031338	183031338	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183031338	183031338	G	C	SNP	FAM129A	NM_052966	human	genbank	54_36p	-1	validated	missense	c.2183	p.P728R	0	NULL	NULL	-	no_errors
FAM129A	116496	genome.wustl.edu	36	1	183031339	183031339	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183031339	183031339	G	T	SNP	FAM129A	NM_052966	human	genbank	54_36p	-1	validated	missense	c.2182	p.P728T	0	NULL	NULL	-	no_errors
C1orf26	54823	genome.wustl.edu	36	1	183410550	183410550	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183410550	183410550	C	T	SNP	C1orf26	NM_001105518	human	genbank	54_36p	1	validated	silent	c.648	p.N216	0	NULL	"superfamily_SSF88723,HMMSmart_PINc"	-	no_errors
IVNS1ABP	10625	genome.wustl.edu	36	1	183533919	183533919	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183533919	183533919	C	G	SNP	IVNS1ABP	NM_006469	human	genbank	54_36p	-1	validated	silent	c.1800	p.G600	0.99	"superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
IVNS1ABP	10625	genome.wustl.edu	36	1	183545153	183545153	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	183545153	183545153	A	T	SNP	IVNS1ABP	NM_006469	human	genbank	54_36p	-1	validated	nonsense	c.96	p.C32*	1	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184159201	184159201	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184159201	184159201	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.1078	p.D360N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184258889	184258889	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184258889	184258889	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.5730	p.H1910	1	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184358857	184358857	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184358857	184358857	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.12381	p.V4127	0.96	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184402616	184402616	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184402616	184402616	G	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.15493	p.D5165Y	1	"HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	genome.wustl.edu	36	1	184418038	184418038	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184418038	184418038	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.16410	p.C5470	1	"HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
TPR	7175	genome.wustl.edu	36	1	184595581	184595581	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184595581	184595581	T	C	SNP	TPR	NM_003292	human	genbank	54_36p	-1	reviewed	silent	c.1362	p.L454	0.99	NULL	"superfamily_Prefoldin,HMMPfam_TPR_MLP1_2"	-	no_errors
PTGS2	5743	genome.wustl.edu	36	1	184912345	184912345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	184912345	184912345	C	T	SNP	PTGS2	NM_000963	human	genbank	54_36p	-1	reviewed	missense	c.847	p.G283S	0.99	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	"superfamily_EGF/Laminin,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	-	no_errors
PLA2G4A	5321	genome.wustl.edu	36	1	185186473	185186473	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	185186473	185186473	C	G	SNP	PLA2G4A	NM_024420	human	genbank	54_36p	1	reviewed	missense	c.1326	p.H442Q	0.96	"HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B,PatternScan_PPASE,PatternScan_SUBTILASE_ASP"	-	no_errors
IGSF21	84966	genome.wustl.edu	36	1	18577378	18577378	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18577378	18577378	G	A	SNP	IGSF21	NM_032880	human	genbank	54_36p	1	provisional	missense	c.1375	p.A459T	1	NULL	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	-	no_errors
KLHDC7A	127707	genome.wustl.edu	36	1	18680136	18680136	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18680136	18680136	C	G	SNP	KLHDC7A	NM_152375	human	genbank	54_36p	1	validated	missense	c.74	p.A25G	0.82	NULL	"superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
KLHDC7A	127707	genome.wustl.edu	36	1	18680771	18680771	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18680771	18680771	G	A	SNP	KLHDC7A	NM_152375	human	genbank	54_36p	1	validated	missense	c.709	p.G237R	0.01	NULL	"HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central"	-	no_errors
PAX7	5081	genome.wustl.edu	36	1	18833476	18833476	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	18833476	18833476	G	C	SNP	PAX7	NM_002584	human	genbank	54_36p	1	reviewed	missense	c.178	p.V60L	1	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like"	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188470230	188470230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	188470230	188470230	C	T	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.619	p.V207I	1	HMMSmart_SM00457	"HMMPfam_MACPF,HMMSmart_SM00457"	-	no_errors
TAS1R2	80834	genome.wustl.edu	36	1	19039080	19039080	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19039080	19039080	C	T	SNP	TAS1R2	NM_152232	human	genbank	54_36p	-1	validated	missense	c.2120	p.R707H	0	HMMPfam_7tm_3	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,superfamily_SSF57586,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3"	-	no_errors
RGS18	64407	genome.wustl.edu	36	1	190395038	190395038	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190395038	190395038	G	A	SNP	RGS18	NM_130782	human	genbank	54_36p	1	reviewed	missense	c.185	p.R62H	0	NULL	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
RGS18	64407	genome.wustl.edu	36	1	190395051	190395051	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190395051	190395051	T	G	SNP	RGS18	NM_130782	human	genbank	54_36p	1	reviewed	silent	c.198	p.S66	0.29	NULL	"HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS"	-	no_errors
RGS18	64407	genome.wustl.edu	36	1	190417080	190417080	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190417080	190417080	G	C	SNP	RGS18	NM_130782	human	genbank	54_36p	1	reviewed	missense	c.319	p.E107Q	1	"HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS"	"HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS"	-	no_errors
RGS21	431704	genome.wustl.edu	36	1	190583138	190583138	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	190583138	190583138	C	A	SNP	RGS21	NM_001039152	human	genbank	54_36p	1	provisional	missense	c.84	p.N28K	0.96	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19314710	19314710	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	19314710	19314710	C	A	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.10832	p.R3611L	1	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19316463	19316463	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19316463	19316463	C	T	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	silent	c.10662	p.T3554	0.97	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19316494	19316494	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19316494	19316494	T	A	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.10631	p.Y3544F	1	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19352973	19352973	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19352973	19352973	T	G	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.6506	p.E2169A	1	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	genome.wustl.edu	36	1	19366167	19366167	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19366167	19366167	G	C	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.4045	p.R1349G	1	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
KIAA0090	23065	genome.wustl.edu	36	1	19438993	19438993	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	19438993	19438993	G	A	SNP	KIAA0090	NM_015047	human	genbank	54_36p	-1	predicted	missense	c.860	p.S287F	0.88	superfamily_Quinoprotein alcohol dehydrogenase-like	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_DUF1620"	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194562493	194562493	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	194562493	194562493	G	A	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	silent	c.2253	p.P751	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a"	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194634315	194634315	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	194634315	194634315	C	T	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	splice_site	c.1294+1	e13+1	1	-	-	-	no_errors
KCNT2	343450	genome.wustl.edu	36	1	194665328	194665328	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	194665328	194665328	A	T	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	splice_site	c.819+2	e9+2	1	-	-	-	no_errors
CFHR4	10877	genome.wustl.edu	36	1	195138355	195138355	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195138355	195138355	G	A	SNP	CFHR4	NM_006684	human	genbank	54_36p	1	validated	silent	c.243	p.T81	0	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
ASPM	259266	genome.wustl.edu	36	1	195337279	195337279	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195337279	195337279	C	T	SNP	ASPM	NM_018136	human	genbank	54_36p	-1	validated	silent	c.7725	p.K2575	0	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
ASPM	259266	genome.wustl.edu	36	1	195338672	195338672	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195338672	195338672	C	T	SNP	ASPM	NM_018136	human	genbank	54_36p	-1	validated	missense	c.6332	p.R2111K	0.47	"HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195564406	195564406	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195564406	195564406	G	C	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.302	p.G101A	0.85	"HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195592610	195592610	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	195592610	195592610	G	A	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.1015	p.D339N	0.96	"HMMSmart_SM00179,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
CRB1	23418	genome.wustl.edu	36	1	195657676	195657676	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	195657676	195657676	C	T	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.2095	p.H699Y	1	"HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
LHX9	56956	genome.wustl.edu	36	1	196153694	196153694	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	196153694	196153694	A	G	SNP	LHX9	NM_020204	human	genbank	54_36p	1	reviewed	missense	c.118	p.R40G	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PTPRC	5788	genome.wustl.edu	36	1	196938184	196938184	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	196938184	196938184	C	A	SNP	PTPRC	NM_002838	human	genbank	54_36p	1	reviewed	missense	c.479	p.P160Q	0	NULL	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
ENSG00000209589	0	genome.wustl.edu	36	1	19731278	19731278	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	19731278	19731278	T	A	SNP	ENSG00000209589	ENST00000386854	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0	-	-	-	pseudogene
NR5A2	2494	genome.wustl.edu	36	1	198356604	198356604	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	198356604	198356604	A	C	SNP	NR5A2	NM_205860	human	genbank	54_36p	1	validated	missense	c.1276	p.N426H	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
NBL1	4681	genome.wustl.edu	36	1	19854446	19854446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	19854446	19854446	C	T	SNP	NBL1	NM_182744	human	genbank	54_36p	1	reviewed	silent	c.318	p.T106	1	"HMMPfam_DAN,HMMSmart_CT"	"HMMPfam_DAN,HMMSmart_CT"	-	no_errors
KIF21B	23046	genome.wustl.edu	36	1	199225768	199225768	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	199225768	199225768	G	C	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	silent	c.3057	p.S1019	0.43	"superfamily_WD40_like,superfamily_Prefoldin"	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CACNA1S	779	genome.wustl.edu	36	1	199327481	199327481	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	199327481	199327481	G	A	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	silent	c.604	p.L202	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
IPO9	55705	genome.wustl.edu	36	1	200087914	200087914	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200087914	200087914	G	A	SNP	IPO9	NM_018085	human	genbank	54_36p	1	validated	missense	c.574	p.E192K	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N"	-	no_errors
LMOD1	25802	genome.wustl.edu	36	1	200135833	200135833	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200135833	200135833	C	T	SNP	LMOD1	ENST00000367288	human	ensembl	54_36p	-1	known	missense	c.931	p.E311K	1	HMMPfam_Tropomodulin	"HMMPfam_Tropomodulin,superfamily_SSF52047,HMMPfam_WH2"	-	no_errors
ARL8A	127829	genome.wustl.edu	36	1	200371488	200371488	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200371488	200371488	T	C	SNP	ARL8A	NM_138795	human	genbank	54_36p	-1	validated	silent	c.342	p.L114	0.86	"HMMSmart_SM00177,HMMPfam_Arf,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	"HMMSmart_SM00177,HMMPfam_Arf,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	-	no_errors
PPP1R12B	4660	genome.wustl.edu	36	1	200673582	200673582	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	200673582	200673582	G	T	SNP	PPP1R12B	NM_032105	human	genbank	54_36p	1	reviewed	missense	c.1265	p.G422V	0.99	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
SYT2	127833	genome.wustl.edu	36	1	200835041	200835041	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	200835041	200835041	G	T	SNP	SYT2	NM_177402	human	genbank	54_36p	-1	validated	silent	c.981	p.T327	0.91	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
PPFIA4	8497	genome.wustl.edu	36	1	201281644	201281644	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201281644	201281644	G	C	SNP	PPFIA4	ENST00000367238	human	ensembl	54_36p	1	known	missense	c.911	p.R304P	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
PPFIA4	8497	genome.wustl.edu	36	1	201299692	201299692	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201299692	201299692	G	A	SNP	PPFIA4	NM_015053	human	genbank	54_36p	1	validated	missense	c.1470	p.M490I	1	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
PPFIA4	8497	genome.wustl.edu	36	1	201304215	201304215	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201304215	201304215	T	A	SNP	PPFIA4	NM_015053	human	genbank	54_36p	1	validated	missense	c.1642	p.W548R	1	"HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2"	"HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2"	-	no_errors
FMOD	2331	genome.wustl.edu	36	1	201583696	201583696	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201583696	201583696	T	C	SNP	FMOD	NM_002023	human	genbank	54_36p	-1	reviewed	missense	c.326	p.Y109C	1	"superfamily_SSF52058,HMMSmart_LRRNT"	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
ATP2B4	493	genome.wustl.edu	36	1	201939470	201939470	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	201939470	201939470	G	C	SNP	ATP2B4	NM_001684	human	genbank	54_36p	1	reviewed	missense	c.1005	p.E335D	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase"	###############################################################################################################################################################################################################################################################	-	no_errors
ETNK2	55224	genome.wustl.edu	36	1	202382475	202382475	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	202382475	202382475	C	T	SNP	ETNK2	NM_018208	human	genbank	54_36p	-1	reviewed	missense	c.559	p.A187T	1	"superfamily_Kinase_like,HMMPfam_Choline_kinase"	"superfamily_Kinase_like,HMMPfam_Choline_kinase"	-	no_errors
ETNK2	55224	genome.wustl.edu	36	1	202383259	202383259	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	202383259	202383259	G	T	SNP	ETNK2	ENST00000367198	human	ensembl	54_36p	-1	known	missense	c.68	p.T23K	0	HMMPfam_Choline_kinase	"HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)"	-	no_start_codon
PPP1R15B	84919	genome.wustl.edu	36	1	202646965	202646965	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	202646965	202646965	C	A	SNP	PPP1R15B	NM_032833	human	genbank	54_36p	-1	validated	silent	c.198	p.L66	0.75	HMMPfam_CReP_N	"HMMPfam_CReP_N,HMMPfam_PP1c_bdg"	-	no_errors
NFASC	23114	genome.wustl.edu	36	1	203236956	203236956	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203236956	203236956	C	T	SNP	NFASC	ENST00000367172	human	ensembl	54_36p	1	known	missense	c.3376	p.L1126F	0.51	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
NUAK2	81788	genome.wustl.edu	36	1	203539936	203539936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203539936	203539936	G	A	SNP	NUAK2	NM_030952	human	genbank	54_36p	-1	provisional	silent	c.1152	p.A384	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
UBXN10	127733	genome.wustl.edu	36	1	20389680	20389680	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	20389680	20389680	G	A	SNP	UBXN10	NM_152376	human	genbank	54_36p	1	provisional	silent	c.39	p.E13	0	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00166,HMMPfam_UBX"	-	no_errors
SLC45A3	85414	genome.wustl.edu	36	1	203898616	203898616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203898616	203898616	G	A	SNP	SLC45A3	NM_033102	human	genbank	54_36p	-1	validated	missense	c.926	p.P309L	1	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC45A3	85414	genome.wustl.edu	36	1	203898728	203898728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	203898728	203898728	G	C	SNP	SLC45A3	NM_033102	human	genbank	54_36p	-1	validated	missense	c.814	p.R272G	1	superfamily_MFS general substrate transporter	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
RAB7L1	8934	genome.wustl.edu	36	1	204007251	204007251	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204007251	204007251	G	A	SNP	RAB7L1	NM_003929	human	genbank	54_36p	-1	validated	missense	c.350	p.P117L	0.88	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
AVPR1B	553	genome.wustl.edu	36	1	204391626	204391626	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204391626	204391626	C	A	SNP	AVPR1B	NM_000707	human	genbank	54_36p	1	reviewed	missense	c.563	p.A188E	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
AVPR1B	553	genome.wustl.edu	36	1	204391958	204391958	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204391958	204391958	A	-	DEL	AVPR1B	NM_000707	human	genbank	54_36p	1	reviewed	frame_shift_del	c.895	p.S299fs	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	"(deletion:cds_exon[204391064,204392003])"	no_errors
SRGAP2	23380	genome.wustl.edu	36	1	204633631	204633631	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204633631	204633631	A	G	SNP	SRGAP2	ENST00000295713	human	ensembl	54_36p	1	known	missense	c.551	p.H184R	1	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_start_codon
SRGAP2	23380	genome.wustl.edu	36	1	204698858	204698858	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204698858	204698858	C	A	SNP	SRGAP2	ENST00000367123	human	ensembl	54_36p	1	known	missense	c.728	p.A243E	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_stop_codon
IKBKE	9641	genome.wustl.edu	36	1	204719028	204719028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204719028	204719028	C	T	SNP	IKBKE	NM_014002	human	genbank	54_36p	1	validated	missense	c.1112	p.A371V	1	NULL	"PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
IKBKE	9641	genome.wustl.edu	36	1	204719852	204719852	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	204719852	204719852	C	T	SNP	IKBKE	NM_014002	human	genbank	54_36p	1	validated	silent	c.1200	p.P400	1	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
FCAMR	83953	genome.wustl.edu	36	1	205207598	205207598	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205207598	205207598	C	G	SNP	FCAMR	ENST00000400962	human	ensembl	54_36p	-1	known	missense	c.61	p.E21Q	0	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
C4BPB	725	genome.wustl.edu	36	1	205336565	205336565	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205336565	205336565	G	T	SNP	C4BPB	NM_000716	human	genbank	54_36p	1	reviewed	missense	c.485	p.S162I	0.06	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CR1	1378	genome.wustl.edu	36	1	205807862	205807862	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205807862	205807862	C	A	SNP	CR1	NM_000651	human	genbank	54_36p	1	reviewed	silent	c.4023	p.P1341	0.05	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CR1	1378	genome.wustl.edu	36	1	205851743	205851743	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	205851743	205851743	A	T	SNP	CR1	NM_000651	human	genbank	54_36p	1	reviewed	missense	c.6394	p.S2132C	0	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	-	no_errors
CD34	947	genome.wustl.edu	36	1	206128671	206128671	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	206128671	206128671	C	G	SNP	CD34	NM_001025109	human	genbank	54_36p	-1	validated	missense	c.951	p.W317C	1	HMMPfam_CD34_antigen	HMMPfam_CD34_antigen	-	no_errors
PLXNA2	5362	genome.wustl.edu	36	1	206457025	206457025	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	206457025	206457025	T	A	SNP	PLXNA2	NM_025179	human	genbank	54_36p	-1	reviewed	missense	c.866	p.K289M	1	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	-	no_errors
LAMB3	3914	genome.wustl.edu	36	1	207857413	207857413	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	207857413	207857413	C	A	SNP	LAMB3	NM_000228	human	genbank	54_36p	-1	reviewed	nonsense	c.3193	p.E1065*	0	NULL	"HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
TRAF3IP3	80342	genome.wustl.edu	36	1	208015458	208015458	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208015458	208015458	G	T	SNP	TRAF3IP3	NM_025228	human	genbank	54_36p	1	provisional	splice_site	c.855+1	e8+1	1	-	-	-	no_errors
C1orf107	27042	genome.wustl.edu	36	1	208070891	208070893	+	In_Frame_Del	DEL	GAG	GAG	-	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208070891	208070893	GAG	-	DEL	C1orf107	NM_014388	human	genbank	54_36p	1	validated	in_frame_del	c.268_270	p.E93in_frame_del	0.861:0.831:0.735	NULL	HMMPfam_DUF1253	"(deletion:cds_exon[208070771,208071011])"	no_errors
C1orf107	27042	genome.wustl.edu	36	1	208082350	208082351	+	Missense_Mutation	DNP	GG	GG	CT	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	GG	GG	GG	CT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208082350	208082351	GG	CT	DNP	C1orf107	NM_014388	human	genbank	54_36p	1	validated	missense	c.1603_1604	p.G535L	1.000:1.000	HMMPfam_DUF1253	HMMPfam_DUF1253	-	no_errors
KIF17	57576	genome.wustl.edu	36	1	20865316	20865316	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	20865316	20865316	G	T	SNP	KIF17	NM_020816	human	genbank	54_36p	-1	validated	missense	c.2889	p.S963R	1	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
HHAT	55733	genome.wustl.edu	36	1	208658139	208658139	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208658139	208658139	G	A	SNP	HHAT	NM_018194	human	genbank	54_36p	1	validated	missense	c.703	p.D235N	0	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
HHAT	55733	genome.wustl.edu	36	1	208753155	208753155	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208753155	208753155	G	A	SNP	HHAT	NM_018194	human	genbank	54_36p	1	validated	missense	c.1043	p.R348K	1	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
KIF17	57576	genome.wustl.edu	36	1	20889296	20889296	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	20889296	20889296	C	T	SNP	KIF17	NM_020816	human	genbank	54_36p	-1	validated	silent	c.1353	p.T451	0.94	NULL	"HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	208923393	208923393	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208923393	208923393	G	A	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	silent	c.2823	p.N941	0.16	NULL	"superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	208924017	208924017	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208924017	208924017	C	T	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	silent	c.2199	p.P733	0.67	NULL	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209044047	209044047	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209044047	209044047	A	G	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.1547	p.L516P	1	superfamily_cAMP-binding domain-like	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
KCNH1	3756	genome.wustl.edu	36	1	209258748	209258748	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209258748	209258748	C	A	SNP	KCNH1	NM_172362	human	genbank	54_36p	-1	reviewed	missense	c.1032	p.Q344H	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
RD3	343035	genome.wustl.edu	36	1	209721351	209721351	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209721351	209721351	G	A	SNP	RD3	NM_183059	human	genbank	54_36p	-1	validated	silent	c.30	p.N10	0.98	NULL	NULL	-	no_errors
SLC30A1	7779	genome.wustl.edu	36	1	209815995	209815995	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	209815995	209815995	A	C	SNP	SLC30A1	NM_021194	human	genbank	54_36p	-1	validated	missense	c.882	p.F294L	0.97	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212862097	212862097	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212862097	212862097	A	G	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	silent	c.918	p.K306	1	NULL	"HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F"	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212882145	212882145	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212882145	212882145	A	G	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	missense	c.3841	p.T1281A	0.01	NULL	"superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F,HMMPfam_Cenp-F_N,HMMPfam_Cenp-F_leu_zip,superfamily_Spectrin repeat"	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212882202	212882202	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212882202	212882202	C	T	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	silent	c.3898	p.L1300	0.01	NULL	"superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F,HMMPfam_Cenp-F_N,HMMPfam_Cenp-F_leu_zip,superfamily_Spectrin repeat"	-	no_errors
CENPF	1063	genome.wustl.edu	36	1	212887123	212887123	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	212887123	212887123	T	G	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	missense	c.7587	p.N2529K	0	NULL	"superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F,HMMPfam_Cenp-F_N,HMMPfam_Cenp-F_leu_zip,superfamily_Spectrin repeat"	-	no_errors
KCTD3	51133	genome.wustl.edu	36	1	213813754	213813754	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	213813754	213813754	T	G	SNP	KCTD3	NM_016121	human	genbank	54_36p	1	validated	missense	c.86	p.F29C	1	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1"	-	no_errors
ESRRG	2104	genome.wustl.edu	36	1	214917271	214917271	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214917271	214917271	G	A	SNP	ESRRG	NM_001438	human	genbank	54_36p	-1	validated	missense	c.242	p.S81L	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
NBPF3	84224	genome.wustl.edu	36	1	21670841	21670841	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21670841	21670841	C	G	SNP	NBPF3	NM_032264	human	genbank	54_36p	1	validated	missense	c.639	p.H213Q	0	NULL	HMMPfam_DUF1220	-	no_errors
ALPL	249	genome.wustl.edu	36	1	21760242	21760242	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21760242	21760242	G	A	SNP	ALPL	NM_000478	human	genbank	54_36p	1	reviewed	missense	c.247	p.E83K	1	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE"	-	no_errors
ZC3H11B	643136	genome.wustl.edu	36	1	217850050	217850050	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	217850050	217850050	C	A	SNP	ZC3H11B	XR_041768	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.11	-	-	-	pseudogene
EPRS	2058	genome.wustl.edu	36	1	218228735	218228735	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	218228735	218228735	T	C	SNP	EPRS	NM_004446	human	genbank	54_36p	-1	reviewed	silent	c.2595	p.K865	1	"superfamily_S15/NS1_bind,HMMPfam_WHEP-TRS"	###############################################################################################################################################################################################################################################################	-	no_errors
IARS2	55699	genome.wustl.edu	36	1	218378008	218378008	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	218378008	218378008	G	C	SNP	IARS2	NM_018060	human	genbank	54_36p	1	validated	missense	c.2175	p.K725N	1	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	###############################################################################################################################################################################################################################################################	-	no_errors
RAP1GAP	5909	genome.wustl.edu	36	1	21850624	21850624	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21850624	21850624	C	T	SNP	RAP1GAP	ENST00000374757	human	ensembl	54_36p	-1	known	silent	c.126	p.V42	0	NULL	"HMMPfam_GoLoco,HMMSmart_GoLoco,superfamily_SSF111347"	-	no_errors
USP48	84196	genome.wustl.edu	36	1	21894209	21894209	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	21894209	21894209	T	A	SNP	USP48	NM_032236	human	genbank	54_36p	-1	reviewed	missense	c.2820	p.K940N	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Ubiquitin-like"	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22074827	22074827	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22074827	22074827	G	T	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.3184	p.Q1062K	0.99	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281,HMMPfam_Laminin_B"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22078135	22078135	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22078135	22078135	T	C	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.2410	p.M804V	0.93	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
TLR5	7100	genome.wustl.edu	36	1	221352673	221352673	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	221352673	221352673	G	T	SNP	TLR5	NM_003268	human	genbank	54_36p	-1	validated	nonsense	c.324	p.Y108*	0.01	"superfamily_SSF52058,HMMSmart_LRR_TYP"	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
TP53BP2	7159	genome.wustl.edu	36	1	222046844	222046844	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	222046844	222046844	C	G	SNP	TP53BP2	NM_001031685	human	genbank	54_36p	-1	reviewed	missense	c.2866	p.D956H	0.99	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
WNT4	54361	genome.wustl.edu	36	1	22320651	22320651	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22320651	22320651	G	A	SNP	WNT4	NM_030761	human	genbank	54_36p	-1	reviewed	missense	c.319	p.R107W	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
WNT4	54361	genome.wustl.edu	36	1	22326371	22326371	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	22326371	22326371	G	A	SNP	WNT4	ENST00000374655	human	ensembl	54_36p	-1	known	silent	c.504	p.T168	0	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097"	-	no_errors
ENAH	55740	genome.wustl.edu	36	1	223768935	223768935	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	223768935	223768935	T	G	SNP	ENAH	NM_001008493	human	genbank	54_36p	-1	validated	silent	c.1204	p.R402	0.99	NULL	"HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_VASP_tetra"	-	no_errors
TMEM63A	9725	genome.wustl.edu	36	1	224101408	224101408	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	224101408	224101408	G	A	SNP	TMEM63A	NM_014698	human	genbank	54_36p	-1	provisional	nonsense	c.2380	p.Q794*	0.02	NULL	"superfamily_SSF54928,HMMPfam_DUF221"	-	no_errors
ITPKB	3707	genome.wustl.edu	36	1	224896358	224896358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	224896358	224896358	C	T	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	missense	c.2338	p.A780T	1	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	-	no_errors
ITPKB	3707	genome.wustl.edu	36	1	224990219	224990219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	224990219	224990219	G	A	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	missense	c.1564	p.R522C	0	NULL	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	-	no_errors
SNAP47	116841	genome.wustl.edu	36	1	226013795	226013795	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226013795	226013795	C	G	SNP	SNAP47	NM_053052	human	genbank	54_36p	1	validated	nonsense	c.1109	p.S370*	0.01	NULL	NULL	-	no_errors
WNT9A	7483	genome.wustl.edu	36	1	226178521	226178521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	226178521	226178521	G	A	SNP	WNT9A	NM_003395	human	genbank	54_36p	-1	validated	missense	c.556	p.R186W	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
WNT3A	89780	genome.wustl.edu	36	1	226277096	226277096	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226277096	226277096	C	T	SNP	WNT3A	NM_033131	human	genbank	54_36p	1	reviewed	silent	c.177	p.Y59	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226499829	226499829	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226499829	226499829	C	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	missense	c.3574	p.Q1192E	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	###############################################################################################################################################################################################################################################################	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226511219	226511219	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226511219	226511219	C	G	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	missense	c.4554	p.S1518R	0.92	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM17	51127	genome.wustl.edu	36	1	226662587	226662587	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	226662587	226662587	G	T	SNP	TRIM17	NM_001024940	human	genbank	54_36p	-1	reviewed	missense	c.1372	p.L458M	0.97	"HMMPfam_SPRY,HMMSmart_SPRY"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
RAB4A	5867	genome.wustl.edu	36	1	227505312	227505312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	227505312	227505312	G	A	SNP	RAB4A	NM_004578	human	genbank	54_36p	1	provisional	missense	c.622	p.A208T	0.94	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00176"	"HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
GALNT2	2590	genome.wustl.edu	36	1	228452888	228452888	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	228452888	228452888	A	T	SNP	GALNT2	NM_004481	human	genbank	54_36p	1	reviewed	missense	c.968	p.K323M	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
CAPN9	10753	genome.wustl.edu	36	1	228995244	228995244	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	228995244	228995244	A	T	SNP	CAPN9	NM_006615	human	genbank	54_36p	1	reviewed	missense	c.1817	p.D606V	1	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM67	440730	genome.wustl.edu	36	1	229409060	229409060	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229409060	229409060	G	A	SNP	TRIM67	NM_001004342	human	genbank	54_36p	1	validated	missense	c.1720	p.G574S	1	"HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM67	440730	genome.wustl.edu	36	1	229411375	229411375	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229411375	229411375	A	G	SNP	TRIM67	NM_001004342	human	genbank	54_36p	1	validated	missense	c.1879	p.N627D	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
GNPAT	8443	genome.wustl.edu	36	1	229465158	229465159	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229465158	229465159	CT	-	DEL	GNPAT	NM_014236	human	genbank	54_36p	1	reviewed	frame_shift_del	c.505_506	p.L169fs	1.000:1.000	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	"(deletion:cds_exon[229465092,229465221])"	no_errors
GNPAT	8443	genome.wustl.edu	36	1	229474686	229474686	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	229474686	229474686	G	T	SNP	GNPAT	NM_014236	human	genbank	54_36p	1	reviewed	missense	c.1528	p.V510F	1	NULL	"HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593"	-	no_errors
EPHB2	2048	genome.wustl.edu	36	1	23064266	23064266	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23064266	23064266	C	G	SNP	EPHB2	NM_004442	human	genbank	54_36p	1	reviewed	missense	c.1277	p.S426C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
KIAA1383	54627	genome.wustl.edu	36	1	231008926	231008926	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	231008926	231008926	C	G	SNP	KIAA1383	NM_019090	human	genbank	54_36p	1	validated	missense	c.1534	p.P512A	0.01	NULL	NULL	-	no_errors
EPHB2	2048	genome.wustl.edu	36	1	23112740	23112740	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23112740	23112740	C	A	SNP	EPHB2	ENST00000374630	human	ensembl	54_36p	1	known	silent	c.2958	p.G986	0.66	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
C1orf57	84284	genome.wustl.edu	36	1	231180580	231180580	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	231180580	231180580	G	A	SNP	C1orf57	NM_032324	human	genbank	54_36p	1	predicted	missense	c.553	p.V185M	0.66	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DUF265"	"HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DUF265"	-	no_errors
LOC728973	728973	genome.wustl.edu	36	1	231491760	231491760	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	231491760	231491760	G	T	SNP	LOC728973	XR_015809	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KDM1A	23028	genome.wustl.edu	36	1	23229651	23229651	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23229651	23229651	C	A	SNP	AOF2	NM_015013	human	genbank	54_36p	1	reviewed	missense	c.454	p.P152T	1	NULL	"HMMPfam_SWIRM,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
SLC35F3	148641	genome.wustl.edu	36	1	232433917	232433917	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	232433917	232433917	G	A	SNP	SLC35F3	NM_173508	human	genbank	54_36p	1	provisional	missense	c.415	p.V139M	0.96	NULL	"superfamily_SSF103481,HMMPfam_DUF6"	-	no_errors
TARBP1	6894	genome.wustl.edu	36	1	232620564	232620564	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	232620564	232620564	A	G	SNP	TARBP1	NM_005646	human	genbank	54_36p	-1	reviewed	silent	c.3594	p.A1198	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,superfamily_SSF75217,HMMPfam_SpoU_methylase"	-	no_errors
RBM34	23029	genome.wustl.edu	36	1	233390906	233390906	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	233390906	233390906	A	G	SNP	RBM34	NM_015014	human	genbank	54_36p	-1	provisional	silent	c.138	p.G46	0	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ARID4B	51742	genome.wustl.edu	36	1	233411552	233411552	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	233411552	233411552	T	C	SNP	ARID4B	NM_016374	human	genbank	54_36p	-1	reviewed	missense	c.3305	p.N1102S	1	NULL	"HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
LYST	1130	genome.wustl.edu	36	1	233964493	233964493	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	233964493	233964493	C	T	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	silent	c.8448	p.L2816	0.05	NULL	"PatternScan_COPPER_BLUE,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LYST	1130	genome.wustl.edu	36	1	234032919	234032919	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234032919	234032919	C	A	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.3624	p.Q1208H	1	NULL	"HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
LYST	1130	genome.wustl.edu	36	1	234036550	234036550	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234036550	234036550	G	A	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.2509	p.P837S	0.52	NULL	"HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
LGALS8	3964	genome.wustl.edu	36	1	234767484	234767484	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234767484	234767484	G	A	SNP	LGALS8	NM_006499	human	genbank	54_36p	1	reviewed	missense	c.110	p.G37E	1	"superfamily_ConA_like_lec_gl,HMMSmart_GLECT,HMMPfam_Gal-bind_lectin"	"superfamily_ConA_like_lec_gl,HMMSmart_GLECT,HMMPfam_Gal-bind_lectin"	-	no_errors
ACTN2	88	genome.wustl.edu	36	1	234972931	234972931	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	234972931	234972931	G	T	SNP	ACTN2	NM_001103	human	genbank	54_36p	1	reviewed	missense	c.1220	p.R407M	0.78	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235722886	235722886	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235722886	235722886	G	A	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.1837	p.V613I	0.98	HMMPfam_RYDR_ITPR	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235844061	235844061	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235844061	235844061	C	G	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.5010	p.H1670Q	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235844285	235844285	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235844285	235844285	A	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.5234	p.K1745T	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235904746	235904746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235904746	235904746	C	G	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.8807	p.A2936G	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235930157	235930157	+	Missense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	235930157	235930157	T	A	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.9134	p.V3045E	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235930267	235930267	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235930267	235930267	C	A	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.9244	p.H3082N	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	235947258	235947258	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	235947258	235947258	G	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.10461	p.E3487D	0.99	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	236003483	236003483	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	236003483	236003483	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.11687	p.D3896V	1	HMMPfam_RIH_assoc	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	236031821	236031821	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	236031821	236031821	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	silent	c.14133	p.G4711	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	genome.wustl.edu	36	1	236060514	236060514	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	236060514	236060514	A	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.14717	p.E4906V	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
CHRM3	1131	genome.wustl.edu	36	1	238138533	238138533	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	C	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	238138533	238138533	G	C	SNP	CHRM3	NM_000740	human	genbank	54_36p	1	reviewed	missense	c.1159	p.D387H	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CHRM3	1131	genome.wustl.edu	36	1	238138701	238138701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	238138701	238138701	G	A	SNP	CHRM3	NM_000740	human	genbank	54_36p	1	reviewed	missense	c.1327	p.V443I	0.02	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
MDS2	259283	genome.wustl.edu	36	1	23838327	23838327	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23838327	23838327	A	G	SNP	MDS2	ENST00000374555	human	ensembl	54_36p	1	known	missense	c.145	p.S49G	0	NULL	NULL	-	no_errors
MDS2	259283	genome.wustl.edu	36	1	23838757	23838757	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	23838757	23838757	C	A	SNP	MDS2	ENST00000374555	human	ensembl	54_36p	1	known	missense	c.147	p.S49R	0.03	NULL	NULL	-	no_errors
FMN2	56776	genome.wustl.edu	36	1	238437160	238437160	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	238437160	238437160	C	A	SNP	FMN2	NM_020066	human	genbank	54_36p	1	validated	missense	c.2854	p.Q952K	0.6	HMMSmart_SM00498	"PatternScan_LECTIN_LEGUME_BETA,HMMSmart_SM00498,HMMPfam_Drf_FH1,superfamily_Formin homology 2 domain (FH2 domain),HMMPfam_FH2"	-	no_errors
RGS7	6000	genome.wustl.edu	36	1	239032743	239032743	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239032743	239032743	C	T	SNP	RGS7	ENST00000407905	human	ensembl	54_36p	-1	known	missense	c.1361	p.G454D	0	superfamily_Regulat_G_prot_signal_superfam	"superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_stop_codon
RGS7	6000	genome.wustl.edu	36	1	239099994	239099994	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239099994	239099994	A	T	SNP	RGS7	NM_002924	human	genbank	54_36p	-1	validated	missense	c.434	p.L145H	1	NULL	"superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
RGS7	6000	genome.wustl.edu	36	1	239328677	239328677	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239328677	239328677	G	A	SNP	RGS7	NM_002924	human	genbank	54_36p	-1	validated	silent	c.87	p.D29	1	superfamily_SSF46785	"HMMPfam_RGS,HMMSmart_RGS,HMMPfam_DEP,HMMSmart_DEP,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF46785"	-	no_errors
FH	2271	genome.wustl.edu	36	1	239730425	239730425	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239730425	239730425	G	C	SNP	FH	NM_000143	human	genbank	54_36p	-1	reviewed	missense	c.1325	p.T442R	1	superfamily_L-aspartase-like	"superfamily_L-aspartase-like,HMMPfam_Lyase_1,PatternScan_FUMARATE_LYASES,HMMPfam_FumaraseC_C"	-	no_errors
KMO	8564	genome.wustl.edu	36	1	239798427	239798427	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239798427	239798427	C	A	SNP	KMO	NM_003679	human	genbank	54_36p	1	validated	missense	c.814	p.L272I	0.99	superfamily_FAD/NAD(P)-binding domain	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO"	-	no_errors
KMO	8564	genome.wustl.edu	36	1	239820012	239820012	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	239820012	239820012	T	G	SNP	KMO	NM_003679	human	genbank	54_36p	1	validated	missense	c.1174	p.S392A	0.29	superfamily_FAD/NAD(P)-binding domain	"HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
EXO1	9156	genome.wustl.edu	36	1	240083293	240083293	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240083293	240083293	G	A	SNP	EXO1	NM_006027	human	genbank	54_36p	1	reviewed	missense	c.292	p.A98T	0.98	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like"	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
MAP1LC3C	440738	genome.wustl.edu	36	1	240226291	240226291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240226291	240226291	C	T	SNP	MAP1LC3C	NM_001004343	human	genbank	54_36p	-1	validated	missense	c.241	p.A81T	0.1	"superfamily_SSF54236,HMMPfam_MAP1_LC3"	"superfamily_SSF54236,HMMPfam_MAP1_LC3"	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240343860	240343860	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240343860	240343860	A	C	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.749	p.I250S	1	"HMMPfam_PLD_envelope,superfamily_SSF56024"	"superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope"	-	no_errors
PLD5	200150	genome.wustl.edu	36	1	240354478	240354478	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	240354478	240354478	C	A	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.572	p.W191L	1	HMMPfam_PLD_envelope	"HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024"	-	no_errors
LOC646330	646330	genome.wustl.edu	36	1	24100689	24100689	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	24100689	24100689	G	A	SNP	LOC646330	XR_017189	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CEP170	9859	genome.wustl.edu	36	1	241402644	241402644	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	241402644	241402644	G	A	SNP	CEP170	NM_014812	human	genbank	54_36p	-1	reviewed	missense	c.1694	p.T565I	1	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA"	-	no_errors
ADSS	159	genome.wustl.edu	36	1	242645991	242645991	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	242645991	242645991	G	C	SNP	ADSS	NM_001126	human	genbank	54_36p	-1	reviewed	silent	c.1083	p.T361	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Adenylsucc_synt,HMMSmart_SM00788"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,PatternScan_ADENYLOSUCCIN_SYN_1,PatternScan_ADENYLOSUCCIN_SYN_2"	-	no_errors
ADSS	159	genome.wustl.edu	36	1	242653964	242653964	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	242653964	242653964	G	T	SNP	ADSS	NM_001126	human	genbank	54_36p	-1	reviewed	silent	c.495	p.G165	0.85	"HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,PatternScan_ADENYLOSUCCIN_SYN_2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,PatternScan_ADENYLOSUCCIN_SYN_2,PatternScan_ADENYLOSUCCIN_SYN_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243770770	243770770	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243770770	243770770	C	T	SNP	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	silent	c.1245	p.L415	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243770848	243770848	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243770848	243770848	G	C	SNP	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	missense	c.1323	p.K441N	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243876204	243876207	+	Splice_Site	DEL	AAGT	AAGT	-	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	AAGT	AAGT	AAGT	-	AAGT	AAGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243876204	243876207	AAGT	-	DEL	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	splice_site_del	c.2257_2258	p.K753fs	1.000:1.000	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"(deletion:cds_exon[243876046,243876205], intron[243876206,243914157])"	no_errors
KIF26B	55083	genome.wustl.edu	36	1	243928855	243928855	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	243928855	243928855	G	A	SNP	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	missense	c.6071	p.R2024H	1	NULL	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TFB2M	64216	genome.wustl.edu	36	1	244770987	244770987	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	244770987	244770987	C	G	SNP	TFB2M	NM_022366	human	genbank	54_36p	-1	validated	missense	c.1160	p.W387S	0.31	NULL	"PatternScan_RRNA_A_DIMETH,superfamily_SSF53335,HMMPfam_RrnaAD"	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245080990	245080990	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245080990	245080990	A	T	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.4941	p.S1647R	0.86	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245087640	245087640	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245087640	245087640	A	T	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.4232	p.L1411H	0.08	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
AHCTF1	25909	genome.wustl.edu	36	1	245137665	245137665	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245137665	245137665	C	G	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.575	p.G192A	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
ZNF496	84838	genome.wustl.edu	36	1	245531178	245531178	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245531178	245531178	C	G	SNP	ZNF496	NM_032752	human	genbank	54_36p	-1	provisional	missense	c.1030	p.E344Q	0	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245648896	245648896	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245648896	245648896	C	G	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.177	p.I59M	0.93	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN"	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1"	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245654347	245654347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245654347	245654347	C	G	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.979	p.R327G	0.09	HMMPfam_NACHT	"HMMPfam_LRR_1,HMMSmart_LRR_RI,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047"	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245666066	245666066	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245666066	245666066	G	C	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	splice_site	c.2669+1	e6+1	1	-	-	-	no_errors
NLRP3	114548	genome.wustl.edu	36	1	245673982	245673982	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245673982	245673982	C	G	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.2755	p.L919V	0.33	"HMMPfam_LRR_1,superfamily_SSF52047"	"HMMPfam_LRR_1,HMMSmart_LRR_RI,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047"	-	no_errors
OR2W5	441932	genome.wustl.edu	36	1	245721382	245721382	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245721382	245721382	C	A	SNP	OR2W5	NM_001004698	human	genbank	54_36p	1	provisional	silent	c.330	p.T110	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR2C3	81472	genome.wustl.edu	36	1	245761802	245761802	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245761802	245761802	A	C	SNP	OR2C3	NM_198074	human	genbank	54_36p	-1	validated	missense	c.632	p.L211R	0.12	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR14K1	343170	genome.wustl.edu	36	1	245968742	245968742	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	245968742	245968742	A	T	SNP	OR14K1	ENST00000283225	human	ensembl	54_36p	1	known	missense	c.203	p.D68V	0.08	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2L8	391190	genome.wustl.edu	36	1	246179561	246179561	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246179561	246179561	G	C	SNP	OR2L8	NM_001001963	human	genbank	54_36p	1	provisional	missense	c.779	p.R260P	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2AK2	391191	genome.wustl.edu	36	1	246195322	246195322	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246195322	246195322	T	A	SNP	OR2AK2	NM_001004491	human	genbank	54_36p	1	provisional	missense	c.66	p.S22R	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2L1P	26247	genome.wustl.edu	36	1	246220752	246220752	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246220752	246220752	C	T	SNP	OR2L1P	NR_002145	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.02	-	-	-	pseudogene
OR2T33	391195	genome.wustl.edu	36	1	246502789	246502789	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246502789	246502789	G	T	SNP	OR2T33	NM_001004695	human	genbank	54_36p	-1	provisional	missense	c.951	p.H317Q	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T6	254879	genome.wustl.edu	36	1	246617696	246617696	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246617696	246617696	T	C	SNP	OR2T6	NM_001005471	human	genbank	54_36p	1	provisional	missense	c.164	p.L55P	0.99	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2G6	391211	genome.wustl.edu	36	1	246752148	246752148	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246752148	246752148	C	T	SNP	OR2G6	NM_001013355	human	genbank	54_36p	1	validated	missense	c.578	p.T193I	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T34	127068	genome.wustl.edu	36	1	246804504	246804504	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	246804504	246804504	G	T	SNP	OR2T34	NM_001001821	human	genbank	54_36p	-1	provisional	missense	c.178	p.L60I	0.96	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T35	403244	genome.wustl.edu	36	1	246868520	246868520	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	246868520	246868520	G	A	SNP	OR2T35	NM_001001827	human	genbank	54_36p	-1	provisional	silent	c.663	p.I221	0.42	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PGBD2	267002	genome.wustl.edu	36	1	247178593	247178593	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	247178593	247178593	G	C	SNP	PGBD2	NM_170725	human	genbank	54_36p	1	validated	missense	c.1187	p.G396A	1	NULL	NULL	-	no_errors
SRRM1	10250	genome.wustl.edu	36	1	24850623	24850623	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	24850623	24850623	A	G	SNP	SRRM1	NM_005839	human	genbank	54_36p	1	validated	missense	c.658	p.T220A	0.82	NULL	"superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI"	-	no_errors
LDLRAP1	26119	genome.wustl.edu	36	1	25753004	25753004	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	25753004	25753004	G	T	SNP	LDLRAP1	NM_015627	human	genbank	54_36p	1	reviewed	silent	c.93	p.L31	1	superfamily_SSF50729	"superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID"	-	no_errors
SEPN1	57190	genome.wustl.edu	36	1	26007750	26007750	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26007750	26007750	T	A	SNP	SEPN1	ENST00000354177	human	ensembl	54_36p	1	known	silent	c.528	p.L176	0.69	NULL	NULL	-	no_errors
ZNF683	257101	genome.wustl.edu	36	1	26566839	26566839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26566839	26566839	C	G	SNP	ZNF683	NM_173574	human	genbank	54_36p	-1	validated	missense	c.151	p.D51H	0.01	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARID1A	8289	genome.wustl.edu	36	1	26960004	26960004	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26960004	26960004	C	G	SNP	ARID1A	NM_006015	human	genbank	54_36p	1	reviewed	nonsense	c.1991	p.S664*	1	NULL	"superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
ARID1A	8289	genome.wustl.edu	36	1	26974783	26974783	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26974783	26974783	C	T	SNP	ARID1A	NM_006015	human	genbank	54_36p	1	reviewed	nonsense	c.5122	p.Q1708*	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like"	-	no_errors
PIGV	55650	genome.wustl.edu	36	1	26993844	26993844	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	26993844	26993844	G	T	SNP	PIGV	NM_017837	human	genbank	54_36p	1	validated	silent	c.732	p.S244	0	HMMPfam_Mannosyl_trans2	HMMPfam_Mannosyl_trans2	-	no_errors
C1orf172	126695	genome.wustl.edu	36	1	27150987	27150987	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27150987	27150987	T	C	SNP	C1orf172	NM_152365	human	genbank	54_36p	-1	predicted	missense	c.472	p.S158G	1	NULL	NULL	-	no_errors
SLC9A1	6548	genome.wustl.edu	36	1	27300285	27300285	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27300285	27300285	G	A	SNP	SLC9A1	NM_003047	human	genbank	54_36p	-1	validated	silent	c.2106	p.G702	1	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
WDTC1	23038	genome.wustl.edu	36	1	27505417	27505417	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27505417	27505417	G	A	SNP	WDTC1	NM_015023	human	genbank	54_36p	1	validated	missense	c.1987	p.D663N	1	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TPR-like,HMMSmart_SM00028"	-	no_errors
SYTL1	84958	genome.wustl.edu	36	1	27549949	27549949	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	27549949	27549949	C	A	SNP	SYTL1	NM_032872	human	genbank	54_36p	1	provisional	missense	c.1047	p.N349K	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"PatternScan_ATPASE_ALPHA_BETA,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
RPA2	6118	genome.wustl.edu	36	1	28113723	28113723	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28113723	28113723	A	C	SNP	RPA2	ENST00000373909	human	ensembl	54_36p	-1	known	splice_site	c.34+2	e1+2	0	-	-	-	no_errors
EYA3	2140	genome.wustl.edu	36	1	28234668	28234668	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28234668	28234668	G	T	SNP	EYA3	NM_001990	human	genbank	54_36p	-1	reviewed	missense	c.335	p.T112N	1	NULL	HMMPfam_Hydrolase	-	no_errors
SESN2	83667	genome.wustl.edu	36	1	28474027	28474027	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28474027	28474027	C	T	SNP	SESN2	NM_031459	human	genbank	54_36p	1	reviewed	silent	c.1125	p.Y375	1	HMMPfam_PA26	"HMMPfam_PA26,superfamily_SSF69118"	-	no_errors
YTHDF2	51441	genome.wustl.edu	36	1	28942432	28942432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28942432	28942432	C	T	SNP	YTHDF2	NM_016258	human	genbank	54_36p	1	validated	missense	c.1063	p.R355W	1	NULL	HMMPfam_YTH	-	no_errors
OPRD1	4985	genome.wustl.edu	36	1	29058393	29058393	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	29058393	29058393	C	A	SNP	OPRD1	NM_000911	human	genbank	54_36p	1	validated	missense	c.568	p.R190S	0.5	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MECR	51102	genome.wustl.edu	36	1	29395312	29395312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	29395312	29395312	G	A	SNP	MECR	ENST00000373792	human	ensembl	54_36p	-1	known	missense	c.757	p.R253C	0.42	NULL	"HMMPfam_ADH_N,superfamily_GroES-like"	-	no_errors
MECR	51102	genome.wustl.edu	36	1	29401139	29401139	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	29401139	29401139	T	A	SNP	MECR	NM_016011	human	genbank	54_36p	-1	validated	missense	c.659	p.D220V	0.97	"HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains"	"superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
SDC3	9672	genome.wustl.edu	36	1	31122403	31122403	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31122403	31122403	C	T	SNP	SDC3	NM_014654	human	genbank	54_36p	-1	validated	silent	c.453	p.E151	0.99	HMMPfam_Syndecan	"HMMPfam_Syndecan,HMMSmart_SM00294,PatternScan_SYNDECAN"	-	no_errors
PUM1	9698	genome.wustl.edu	36	1	31211533	31211533	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31211533	31211533	T	C	SNP	PUM1	NM_001020658	human	genbank	54_36p	-1	reviewed	missense	c.1969	p.S657G	1	NULL	"superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025"	-	no_errors
HCRTR1	3061	genome.wustl.edu	36	1	31857836	31857836	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31857836	31857836	G	T	SNP	HCRTR1	NM_001525	human	genbank	54_36p	1	reviewed	missense	c.316	p.V106L	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31919092	31919092	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31919092	31919092	C	T	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	splice_site	c.2610+1	e38+1	1	-	-	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31924299	31924299	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31924299	31924299	C	T	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	missense	c.1864	p.A622T	0.59	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
COL16A1	1307	genome.wustl.edu	36	1	31936097	31936097	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31936097	31936097	G	C	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	silent	c.654	p.V218	0.13	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases"	"HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
BAI2	576	genome.wustl.edu	36	1	31994579	31994579	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	31994579	31994579	G	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.446	p.T149N	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32029433	32029433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32029433	32029433	C	T	SNP	SPOCD1	ENST00000294514	human	ensembl	54_36p	-1	known	missense	c.863	p.R288K	0.86	HMMPfam_SPOC	"HMMSmart_SM00510,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC"	-	no_start_codon
SPOCD1	90853	genome.wustl.edu	36	1	32036456	32036456	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32036456	32036456	A	C	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.2084	p.M695R	1	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510"	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510"	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32038045	32038045	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32038045	32038045	G	C	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.1735	p.P579A	0	NULL	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510"	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32053079	32053079	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32053079	32053079	G	T	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.443	p.A148D	0	NULL	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510"	-	no_errors
TXLNA	200081	genome.wustl.edu	36	1	32433268	32433268	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32433268	32433268	G	T	SNP	TXLNA	NM_175852	human	genbank	54_36p	1	validated	missense	c.1526	p.G509V	0.14	NULL	HMMPfam_Taxilin	-	no_errors
IQCC	55721	genome.wustl.edu	36	1	32444411	32444411	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32444411	32444411	C	G	SNP	IQCC	NM_018134	human	genbank	54_36p	1	provisional	missense	c.112	p.R38G	0.74	NULL	HMMPfam_IQ	-	no_errors
MARCKSL1	65108	genome.wustl.edu	36	1	32572997	32572997	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32572997	32572997	G	A	SNP	MARCKSL1	NM_023009	human	genbank	54_36p	-1	validated	nonsense	c.376	p.Q126*	1	NULL	"HMMPfam_MARCKS,PatternScan_MARCKS_1,PatternScan_MARCKS_2"	-	no_errors
RBBP4	5928	genome.wustl.edu	36	1	32895695	32895695	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	32895695	32895695	C	A	SNP	RBBP4	NM_005610	human	genbank	54_36p	1	reviewed	missense	c.245	p.A82D	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
FNDC5	252995	genome.wustl.edu	36	1	33106019	33106019	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33106019	33106019	T	A	SNP	FNDC5	NM_153756	human	genbank	54_36p	-1	provisional	missense	c.196	p.M66L	1	NULL	"superfamily_FN_III-like,HMMPfam_fn3"	-	no_errors
AK2	204	genome.wustl.edu	36	1	33251378	33251378	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33251378	33251378	C	G	SNP	AK2	NM_001625	human	genbank	54_36p	-1	reviewed	missense	c.711	p.M237I	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE,superfamily_Microbial and mitochondrial ADK insert zinc finger domain,HMMPfam_ADK_lid"	-	no_errors
ADC	113451	genome.wustl.edu	36	1	33332896	33332896	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33332896	33332896	G	C	SNP	ADC	NM_052998	human	genbank	54_36p	1	validated	missense	c.748	p.E250Q	1	"HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,superfamily_Alanine racemase C-terminal domain-like"	"HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1,PatternScan_ODR_DC_2_2,superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC"	-	no_errors
ZSCAN20	7579	genome.wustl.edu	36	1	33717802	33717802	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33717802	33717802	C	A	SNP	ZSCAN20	NM_145238	human	genbank	54_36p	1	validated	missense	c.326	p.T109N	0.99	"HMMPfam_SCAN,HMMSmart_SM00431"	"HMMPfam_SCAN,HMMSmart_SM00431,HMMSmart_SM00717,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZSCAN20	7579	genome.wustl.edu	36	1	33731718	33731718	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33731718	33731718	A	G	SNP	ZSCAN20	NM_145238	human	genbank	54_36p	1	validated	missense	c.1789	p.T597A	0	NULL	"HMMSmart_SM00717,HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ARHGEF16	27237	genome.wustl.edu	36	1	3379574	3379574	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	3379574	3379574	G	A	SNP	ARHGEF16	NM_014448	human	genbank	54_36p	1	reviewed	silent	c.231	p.E77	0.94	"HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_RhoGEF"	"HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_1"	-	no_errors
CSMD2	114784	genome.wustl.edu	36	1	33805984	33805984	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	33805984	33805984	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	54_36p	-1	known	missense	c.8176	p.D2726N	0	NULL	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC"	-	no_errors
GJB5	2709	genome.wustl.edu	36	1	34996257	34996257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	34996257	34996257	G	A	SNP	GJB5	NM_005268	human	genbank	54_36p	1	provisional	missense	c.739	p.D247N	0.86	NULL	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
GJB4	127534	genome.wustl.edu	36	1	35000167	35000167	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35000167	35000167	G	T	SNP	GJB4	NM_153212	human	genbank	54_36p	1	validated	missense	c.725	p.G242V	0	NULL	"HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
DLGAP3	58512	genome.wustl.edu	36	1	35105308	35105308	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	35105308	35105308	G	C	SNP	DLGAP3	NM_001080418	human	genbank	54_36p	-1	provisional	missense	c.2649	p.I883M	0.99	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
ZMYM6	9204	genome.wustl.edu	36	1	35226961	35226961	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35226961	35226961	A	C	SNP	ZMYM6	NM_007167	human	genbank	54_36p	-1	validated	missense	c.2309	p.I770S	1	NULL	"HMMPfam_zf-FCS,HMMSmart_SM00746"	-	no_errors
ZMYM6	9204	genome.wustl.edu	36	1	35247025	35247025	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35247025	35247025	T	C	SNP	ZMYM6	NM_007167	human	genbank	54_36p	-1	validated	missense	c.1580	p.N527S	0.99	"HMMPfam_zf-FCS,HMMSmart_SM00746"	"HMMPfam_zf-FCS,HMMSmart_SM00746"	-	no_errors
SFPQ	6421	genome.wustl.edu	36	1	35427386	35427394	+	In_Frame_Del	DEL	GATTTGCCT	GATTTGCCT	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GATTTGCCT	GATTTGCCT	GATTTGCCT	-	GATTTGCCT	GATTTGCCT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35427386	35427394	GATTTGCCT	-	DEL	SFPQ	NM_005066	human	genbank	54_36p	-1	validated	in_frame_del	c.1600_1592	p.QAN531in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_NOPS"	"(deletion:cds_exon[35427374,35427570])"	no_errors
CLSPN	63967	genome.wustl.edu	36	1	35998743	35998743	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	35998743	35998743	G	C	SNP	CLSPN	NM_022111	human	genbank	54_36p	-1	reviewed	missense	c.1366	p.L456V	0.16	NULL	NULL	-	no_errors
EIF2C1	26523	genome.wustl.edu	36	1	36140456	36140456	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36140456	36140456	G	T	SNP	EIF2C1	NM_012199	human	genbank	54_36p	1	reviewed	missense	c.1328	p.G443V	1	NULL	"superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi"	-	no_errors
TP73	7161	genome.wustl.edu	36	1	3614185	3614185	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	3614185	3614185	G	T	SNP	TP73	NM_005427	human	genbank	54_36p	1	reviewed	missense	c.399	p.Q133H	1	"HMMPfam_P53,superfamily_p53-like transcription factors"	"HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain"	-	no_errors
THRAP3	9967	genome.wustl.edu	36	1	36527461	36527461	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36527461	36527461	T	G	SNP	THRAP3	NM_005119	human	genbank	54_36p	1	validated	missense	c.1254	p.F418L	1	NULL	NULL	-	no_errors
THRAP3	9967	genome.wustl.edu	36	1	36534860	36534860	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36534860	36534860	T	A	SNP	THRAP3	NM_005119	human	genbank	54_36p	1	validated	silent	c.2205	p.G735	0.98	NULL	NULL	-	no_errors
OSCP1	127700	genome.wustl.edu	36	1	36656411	36656411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	36656411	36656411	G	C	SNP	C1orf102	NM_145047	human	genbank	54_36p	-1	validated	missense	c.1086	p.I362M	1	NULL	HMMPfam_Oscp1	-	no_errors
DFFB	1677	genome.wustl.edu	36	1	3772119	3772119	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	3772119	3772119	T	C	SNP	DFFB	ENST00000378212	human	ensembl	54_36p	1	known	silent	c.294	p.P98	0	NULL	"superfamily_SSF54277,HMMPfam_CIDE-N"	-	no_errors
DNALI1	7802	genome.wustl.edu	36	1	37799838	37799838	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	37799838	37799838	A	G	SNP	DNALI1	NM_003462	human	genbank	54_36p	1	reviewed	missense	c.557	p.Y186C	1	HMMPfam_Ax_dynein_light	HMMPfam_Ax_dynein_light	-	no_errors
MTF1	4520	genome.wustl.edu	36	1	38076900	38076900	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	38076900	38076900	C	T	SNP	MTF1	NM_005955	human	genbank	54_36p	-1	reviewed	missense	c.763	p.G255R	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MACF1	23499	genome.wustl.edu	36	1	39677659	39677659	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	39677659	39677659	C	G	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.13676	p.A4559G	1	"superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC"	"superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2"	-	no_errors
BMP8B	656	genome.wustl.edu	36	1	40002958	40002958	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	40002958	40002958	T	C	SNP	BMP8B	NM_001720	human	genbank	54_36p	-1	reviewed	silent	c.792	p.A264	0.98	NULL	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
CAP1	10487	genome.wustl.edu	36	1	40302763	40302763	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	40302763	40302763	A	G	SNP	CAP1	NM_001105530	human	genbank	54_36p	1	reviewed	missense	c.469	p.M157V	1	"HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP"	"HMMPfam_CAP_N,PatternScan_CAP_1,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMSmart_SM00673,PatternScan_CAP_2"	-	no_errors
HIVEP3	59269	genome.wustl.edu	36	1	41820483	41820483	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	41820483	41820483	A	G	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.2573	p.I858T	1	NULL	"PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
YBX1	4904	genome.wustl.edu	36	1	42934991	42934991	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42934991	42934991	C	G	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	missense	c.446	p.P149R	1	NULL	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK"	-	no_errors
YBX1	4904	genome.wustl.edu	36	1	42935444	42935444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42935444	42935444	G	C	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	missense	c.664	p.D222H	1	NULL	"HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK"	-	no_errors
YBX1	4904	genome.wustl.edu	36	1	42939246	42939246	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42939246	42939246	C	T	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	silent	c.948	p.P316	1	NULL	"HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK"	-	no_errors
LEPRE1	64175	genome.wustl.edu	36	1	42996119	42996119	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	42996119	42996119	G	A	SNP	LEPRE1	NM_022356	human	genbank	54_36p	-1	reviewed	silent	c.1002	p.D334	0.99	superfamily_SSF48452	"superfamily_SSF48452,HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy"	-	no_errors
ZNF691	51058	genome.wustl.edu	36	1	43089259	43089259	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43089259	43089259	G	A	SNP	ZNF691	NM_015911	human	genbank	54_36p	1	provisional	missense	c.43	p.E15K	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FAM183A	440585	genome.wustl.edu	36	1	43389041	43389041	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43389041	43389041	C	G	SNP	FAM183A	NM_001101376	human	genbank	54_36p	1	validated	silent	c.156	p.P52	1	NULL	NULL	-	no_errors
KIAA0467	23334	genome.wustl.edu	36	1	43664194	43664194	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43664194	43664194	G	A	SNP	KIAA0467	NM_015284	human	genbank	54_36p	1	predicted	silent	c.390	p.P130	0	NULL	NULL	-	no_errors
KIAA0467	23334	genome.wustl.edu	36	1	43669239	43669239	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43669239	43669239	G	A	SNP	KIAA0467	NM_015284	human	genbank	54_36p	1	predicted	missense	c.2110	p.V704I	0	NULL	NULL	-	no_errors
HYI	81888	genome.wustl.edu	36	1	43690208	43690208	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43690208	43690208	C	T	SNP	HYI	NM_031207	human	genbank	54_36p	-1	provisional	missense	c.271	p.D91N	1	"superfamily_Xyl_isomerase-like_TIM-brl,HMMPfam_AP_endonuc_2"	"superfamily_Xyl_isomerase-like_TIM-brl,HMMPfam_AP_endonuc_2"	-	no_errors
PTPRF	5792	genome.wustl.edu	36	1	43842098	43842098	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43842098	43842098	C	G	SNP	PTPRF	NM_002840	human	genbank	54_36p	1	reviewed	missense	c.2688	p.N896K	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	###############################################################################################################################################################################################################################################################	-	no_errors
ST3GAL3	6487	genome.wustl.edu	36	1	44063084	44063084	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44063084	44063084	C	G	SNP	ST3GAL3	NM_174963	human	genbank	54_36p	1	reviewed	missense	c.349	p.P117A	0	NULL	HMMPfam_Glyco_transf_29	-	no_errors
B4GALT2	8704	genome.wustl.edu	36	1	44223557	44223557	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44223557	44223557	T	G	SNP	B4GALT2	NM_001005417	human	genbank	54_36p	1	reviewed	missense	c.761	p.F254C	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2"	-	no_errors
LOC644743	644743	genome.wustl.edu	36	1	44342745	44342745	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44342745	44342745	C	T	SNP	LOC644743	XR_016703	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC644743	644743	genome.wustl.edu	36	1	44342810	44342810	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44342810	44342810	C	T	SNP	LOC644743	XR_016703	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RNF220	55182	genome.wustl.edu	36	1	44650891	44650891	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	44650891	44650891	G	A	SNP	RNF220	NM_018150	human	genbank	54_36p	1	validated	missense	c.535	p.V179I	1	NULL	superfamily_RING/U-box	-	no_errors
PTCH2	8643	genome.wustl.edu	36	1	45070287	45070287	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45070287	45070287	T	A	SNP	PTCH2	NM_003738	human	genbank	54_36p	-1	validated	nonsense	c.472	p.K158*	1	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
LOC128192	128192	genome.wustl.edu	36	1	45226714	45226714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45226714	45226714	G	A	SNP	LOC128192	XM_060887	human	genbank	54_36p	-1	model	missense	c.271	p.H91Y	1	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase"	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
TESK2	10420	genome.wustl.edu	36	1	45583360	45583360	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45583360	45583360	G	C	SNP	TESK2	NM_007170	human	genbank	54_36p	-1	reviewed	silent	c.1455	p.R485	0.98	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TESK2	10420	genome.wustl.edu	36	1	45660000	45660000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	45660000	45660000	G	A	SNP	TESK2	NM_007170	human	genbank	54_36p	-1	reviewed	missense	c.328	p.H110Y	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46264028	46264028	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46264028	46264028	T	A	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	missense	c.1873	p.Y625N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"HMMPfam_DUF1908,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46267163	46267163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46267163	46267163	C	T	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	missense	c.2189	p.P730L	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
MAST2	23139	genome.wustl.edu	36	1	46274325	46274325	+	Nonstop_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46274325	46274325	G	C	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	nonstop	c.5397	p.*1799Y	0.78	NULL	"HMMSmart_SM00219,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
TSPAN1	10103	genome.wustl.edu	36	1	46423344	46423344	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46423344	46423344	C	T	SNP	TSPAN1	NM_005727	human	genbank	54_36p	1	reviewed	silent	c.564	p.T188	0	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
C1orf190	541468	genome.wustl.edu	36	1	46441791	46441791	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46441791	46441791	G	C	SNP	C1orf190	NM_001013615	human	genbank	54_36p	1	validated	missense	c.106	p.E36Q	0.99	NULL	NULL	-	no_errors
RAD54L	8438	genome.wustl.edu	36	1	46516416	46516416	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46516416	46516416	A	G	SNP	RAD54L	NM_003579	human	genbank	54_36p	1	reviewed	missense	c.2119	p.N707D	1	NULL	"HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
FAAH	2166	genome.wustl.edu	36	1	46644044	46644044	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46644044	46644044	A	G	SNP	FAAH	NM_001441	human	genbank	54_36p	1	reviewed	missense	c.776	p.N259S	0.81	"superfamily_Amidase_sig_enz,HMMPfam_Amidase"	"superfamily_Amidase_sig_enz,HMMPfam_Amidase,PatternScan_AMIDASES"	-	no_errors
DMBX1	127343	genome.wustl.edu	36	1	46750477	46750477	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	46750477	46750477	G	A	SNP	DMBX1	NM_147192	human	genbank	54_36p	1	reviewed	silent	c.873	p.P291	0.84	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
MKNK1	8569	genome.wustl.edu	36	1	46824234	46824234	+	Splice_Site	SNP	C	G	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	46824234	46824234	C	G	SNP	MKNK1	ENST00000371949	human	ensembl	54_36p	-1	known	splice_site	c.1-1	e1-1	1	-	-	-	no_errors
CYP4Z2P	163720	genome.wustl.edu	36	1	47097990	47097990	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	47097990	47097990	A	C	SNP	CYP4Z2P	NR_002788	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.99	-	-	-	pseudogene
CYP4A11	1579	genome.wustl.edu	36	1	47171248	47171248	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	47171248	47171248	G	T	SNP	CYP4A11	NM_000778	human	genbank	54_36p	-1	reviewed	missense	c.1281	p.N427K	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4X1	260293	genome.wustl.edu	36	1	47274354	47274354	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	47274354	47274354	C	G	SNP	CYP4X1	NM_178033	human	genbank	54_36p	1	reviewed	missense	c.699	p.H233Q	1	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
SLC5A9	200010	genome.wustl.edu	36	1	48470284	48470284	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	48470284	48470284	C	A	SNP	SLC5A9	NM_001011547	human	genbank	54_36p	1	validated	silent	c.825	p.T275	1	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1"	-	no_errors
SLC5A9	200010	genome.wustl.edu	36	1	48477635	48477635	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	48477635	48477635	C	T	SNP	SLC5A9	NM_001011547	human	genbank	54_36p	1	validated	silent	c.1570	p.L524	1	NULL	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1"	-	no_errors
SPATA6	54558	genome.wustl.edu	36	1	48593979	48593979	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	48593979	48593979	G	A	SNP	SPATA6	NM_019073	human	genbank	54_36p	-1	provisional	missense	c.1144	p.R382W	1	NULL	NULL	-	no_errors
LOC343184	343184	genome.wustl.edu	36	1	50564582	50564582	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	50564582	50564582	C	T	SNP	LOC343184	XR_016832	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
FAF1	11124	genome.wustl.edu	36	1	50713925	50713925	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	50713925	50713925	G	C	SNP	FAF1	NM_007051	human	genbank	54_36p	-1	reviewed	silent	c.1668	p.S556	1	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00594,HMMSmart_SM00166,HMMPfam_UBX"	-	no_errors
CFLP2	391039	genome.wustl.edu	36	1	51396749	51396749	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	51396749	51396749	G	C	SNP	LOC391039	XR_017560	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
ZFYVE9	9372	genome.wustl.edu	36	1	52584418	52584418	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	52584418	52584418	C	G	SNP	ZFYVE9	NM_004799	human	genbank	54_36p	1	reviewed	missense	c.4215	p.C1405W	1	NULL	"HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZCCHC11	23318	genome.wustl.edu	36	1	52713761	52713761	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	52713761	52713761	G	A	SNP	ZCCHC11	NM_001009881	human	genbank	54_36p	-1	validated	silent	c.2058	p.S686	1	superfamily_PAP/OAS1 substrate-binding domain	"PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2"	-	no_errors
SLC1A7	6512	genome.wustl.edu	36	1	53327187	53327187	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	53327187	53327187	T	A	SNP	SLC1A7	NM_006671	human	genbank	54_36p	-1	validated	missense	c.1414	p.I472F	1	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
CDCP2	200008	genome.wustl.edu	36	1	54378331	54378331	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	54378331	54378331	T	A	SNP	CDCP2	NM_201546	human	genbank	54_36p	-1	provisional	missense	c.800	p.N267I	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
PARS2	25973	genome.wustl.edu	36	1	54996168	54996168	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	54996168	54996168	C	A	SNP	PARS2	NM_152268	human	genbank	54_36p	-1	provisional	nonsense	c.1255	p.G419*	1	"superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
BSND	7809	genome.wustl.edu	36	1	55245270	55245270	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	55245270	55245270	G	A	SNP	BSND	NM_057176	human	genbank	54_36p	1	reviewed	silent	c.285	p.Q95	0.97	NULL	NULL	-	no_errors
PCSK9	255738	genome.wustl.edu	36	1	55296327	55296327	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	55296327	55296327	C	A	SNP	PCSK9	NM_174936	human	genbank	54_36p	1	reviewed	missense	c.1211	p.P404Q	0.51	"superfamily_Subtilisin-like,HMMPfam_Peptidase_S8"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8"	-	no_errors
USP24	23358	genome.wustl.edu	36	1	55316852	55316852	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	55316852	55316852	A	G	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	missense	c.6781	p.Y2261H	1	NULL	"superfamily_Ubiquitin-like,PatternScan_SUGAR_TRANSPORT_1,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
OR4F5	79501	genome.wustl.edu	36	1	59401	59401	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	59401	59401	G	A	SNP	OR4F5	NM_001005484	human	genbank	54_36p	1	provisional	missense	c.448	p.V150M	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FGGY	55277	genome.wustl.edu	36	1	60000837	60000837	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	60000837	60000837	A	G	SNP	FGGY	NM_018291	human	genbank	54_36p	1	validated	missense	c.1313	p.D438G	0.02	NULL	"superfamily_SSF53067,HMMPfam_FGGY_C"	-	no_errors
CYP2J2	1573	genome.wustl.edu	36	1	60131951	60131951	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	60131951	60131951	G	T	SNP	CYP2J2	NM_000775	human	genbank	54_36p	-1	reviewed	missense	c.1469	p.S490Y	0.07	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CHD5	26038	genome.wustl.edu	36	1	6129510	6129511	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	6129510	6129511	-	G	INS	CHD5	NM_015557	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.1392_1391	p.L465fs	0.408:0.998	"superfamily_FYVE_PHD_ZnF,superfamily_Chromodomain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
TM2D1	83941	genome.wustl.edu	36	1	61963351	61963351	+	Silent	SNP	A	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	61963351	61963351	A	C	SNP	TM2D1	NM_032027	human	genbank	54_36p	-1	reviewed	silent	c.30	p.S10	0	NULL	HMMPfam_TM2	-	no_errors
KANK4	163782	genome.wustl.edu	36	1	62509743	62509743	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	62509743	62509743	G	A	SNP	KANK4	NM_181712	human	genbank	54_36p	-1	validated	silent	c.2007	p.N669	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
USP1	7398	genome.wustl.edu	36	1	62688607	62688607	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	62688607	62688607	C	G	SNP	USP1	NM_001017415	human	genbank	54_36p	1	reviewed	missense	c.1725	p.S575R	1	"superfamily_SSF54001,HMMPfam_UCH"	"superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
DOCK7	85440	genome.wustl.edu	36	1	62892020	62892020	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	62892020	62892020	C	G	SNP	DOCK7	NM_033407	human	genbank	54_36p	-1	validated	missense	c.353	p.R118T	1	NULL	HMMPfam_Ded_cyto	-	no_errors
ATG4C	84938	genome.wustl.edu	36	1	63102353	63102353	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	63102353	63102353	C	A	SNP	ATG4C	NM_032852	human	genbank	54_36p	1	reviewed	missense	c.1312	p.L438I	1	NULL	HMMPfam_Peptidase_C54	-	no_errors
PGM1	5236	genome.wustl.edu	36	1	63874627	63874627	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	63874627	63874627	C	T	SNP	PGM1	NM_002633	human	genbank	54_36p	1	provisional	silent	c.1008	p.P336	1	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_III"	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,HMMPfam_PGM_PMM_II,HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase C-terminal domain,HMMPfam_PGM_PMM_IV"	-	no_errors
ROR1	4919	genome.wustl.edu	36	1	64375704	64375704	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	64375704	64375704	G	A	SNP	ROR1	NM_005012	human	genbank	54_36p	1	validated	missense	c.547	p.G183S	1	HMMPfam_Fz	###############################################################################################################################################################################################################################################################	-	no_errors
CACHD1	57685	genome.wustl.edu	36	1	64902807	64902807	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	64902807	64902807	C	G	SNP	CACHD1	NM_020925	human	genbank	54_36p	1	validated	silent	c.1980	p.V660	1	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Cache_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
TAS1R1	80835	genome.wustl.edu	36	1	6553862	6553862	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	6553862	6553862	G	C	SNP	TAS1R1	NM_138697	human	genbank	54_36p	1	reviewed	missense	c.498	p.M166I	1	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
DNAJC6	9829	genome.wustl.edu	36	1	65627639	65627639	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	65627639	65627639	G	T	SNP	DNAJC6	NM_014787	human	genbank	54_36p	1	validated	nonsense	c.1135	p.E379*	1	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ"	-	no_errors
WDR78	79819	genome.wustl.edu	36	1	67131676	67131676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67131676	67131676	G	T	SNP	WDR78	NM_024763	human	genbank	54_36p	-1	validated	missense	c.354	p.D118E	0.01	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
MIER1	57708	genome.wustl.edu	36	1	67184458	67184458	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67184458	67184458	A	G	SNP	MIER1	NM_020948	human	genbank	54_36p	1	validated	missense	c.143	p.H48R	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IL12RB2	3595	genome.wustl.edu	36	1	67560092	67560092	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67560092	67560092	T	G	SNP	IL12RB2	NM_001559	human	genbank	54_36p	1	reviewed	missense	c.296	p.F99C	0.86	HMMPfam_Lep_receptor_Ig	"HMMPfam_Lep_receptor_Ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
IL12RB2	3595	genome.wustl.edu	36	1	67567950	67567950	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	67567950	67567950	C	A	SNP	IL12RB2	NM_001559	human	genbank	54_36p	1	reviewed	missense	c.757	p.L253M	0.06	"HMMSmart_SM00060,superfamily_Fibronectin type III"	"PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Lep_receptor_Ig"	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	6807755	6807755	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	6807755	6807755	C	T	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	silent	c.132	p.S44	1	NULL	"HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ"	-	no_errors
LOC645291	645291	genome.wustl.edu	36	1	68401297	68401297	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	68401297	68401297	C	T	SNP	LOC645291	XR_017617	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LRRC7	57554	genome.wustl.edu	36	1	69916717	69916717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	69916717	69916717	G	T	SNP	LRRC7	ENST00000370958	human	ensembl	54_36p	1	known	missense	c.68	p.R23L	0.99	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70277021	70277021	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70277021	70277021	G	C	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.2812	p.D938H	1	NULL	"superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70277270	70277270	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70277270	70277270	G	T	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.3061	p.A1021S	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70291391	70291391	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70291391	70291391	T	A	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.4091	p.V1364E	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70346078	70346078	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	70346078	70346078	C	A	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.4487	p.P1496H	1	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
NEGR1	257194	genome.wustl.edu	36	1	71849314	71849314	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	71849314	71849314	C	A	SNP	NEGR1	NM_173808	human	genbank	54_36p	-1	validated	missense	c.771	p.W257C	1	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
LRRIQ3	127255	genome.wustl.edu	36	1	74279558	74279558	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	74279558	74279558	T	A	SNP	LRRIQ3	NM_001105659	human	genbank	54_36p	-1	inferred	missense	c.1645	p.S549C	0.02	NULL	"superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1"	-	no_errors
C1orf173	127254	genome.wustl.edu	36	1	74859093	74859093	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	74859093	74859093	G	T	SNP	C1orf173	NM_001002912	human	genbank	54_36p	-1	predicted	missense	c.913	p.P305T	0	NULL	NULL	-	no_errors
TYW3	127253	genome.wustl.edu	36	1	74974865	74974865	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	74974865	74974865	A	G	SNP	TYW3	NM_138467	human	genbank	54_36p	1	provisional	missense	c.226	p.T76A	1	"HMMPfam_TYW3,superfamily_DUF207"	"HMMPfam_TYW3,superfamily_DUF207"	-	no_errors
LHX8	431707	genome.wustl.edu	36	1	75381411	75381411	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	75381411	75381411	C	T	SNP	LHX8	NM_001001933	human	genbank	54_36p	1	validated	missense	c.410	p.S137F	1	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ACADM	34	genome.wustl.edu	36	1	75978367	75978367	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	75978367	75978367	G	A	SNP	ACADM	NM_000016	human	genbank	54_36p	1	reviewed	missense	c.583	p.G195R	1	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M"	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2"	-	no_errors
MSH4	4438	genome.wustl.edu	36	1	76127640	76127640	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	76127640	76127640	G	T	SNP	MSH4	NM_002440	human	genbank	54_36p	1	validated	nonsense	c.2224	p.E742*	1	"HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac"	"superfamily_DNA_mismatch_repair_MutS_connt,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2"	-	no_errors
CAMTA1	23261	genome.wustl.edu	36	1	7646014	7646014	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	7646014	7646014	G	A	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	missense	c.820	p.V274M	1	NULL	"HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LOC729708	729708	genome.wustl.edu	36	1	76938324	76938324	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	76938324	76938324	G	A	SNP	LOC729708	XM_001133949	human	genbank	54_36p	1	model	missense	c.263	p.R88K	1	"superfamily_Triophos_ismrse,HMMPfam_TIM"	"superfamily_Triophos_ismrse,HMMPfam_TIM,PatternScan_TIM"	-	pseudogene
ZZZ3	26009	genome.wustl.edu	36	1	77817877	77817877	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	77817877	77817877	T	C	SNP	ZZZ3	NM_015534	human	genbank	54_36p	-1	provisional	missense	c.2005	p.K669E	1	"HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like"	"HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
ZZZ3	26009	genome.wustl.edu	36	1	77870816	77870816	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	77870816	77870816	G	A	SNP	ZZZ3	NM_015534	human	genbank	54_36p	-1	provisional	missense	c.812	p.S271L	0.99	NULL	"HMMPfam_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding"	-	no_errors
USP33	23032	genome.wustl.edu	36	1	77952922	77952922	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	77952922	77952922	G	C	SNP	USP33	NM_015017	human	genbank	54_36p	-1	validated	missense	c.2273	p.P758R	1	HMMSmart_SM00695	"HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,HMMSmart_SM00695"	-	no_errors
PER3	8863	genome.wustl.edu	36	1	7802824	7802824	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	7802824	7802824	C	T	SNP	PER3	NM_016831	human	genbank	54_36p	1	reviewed	missense	c.1697	p.T566I	1	NULL	"HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC"	-	no_errors
PTGFR	5737	genome.wustl.edu	36	1	78774697	78774697	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	78774697	78774697	G	T	SNP	PTGFR	NM_000959	human	genbank	54_36p	1	reviewed	nonsense	c.817	p.G273*	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ELTD1	64123	genome.wustl.edu	36	1	79156241	79156241	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	79156241	79156241	A	G	SNP	ELTD1	NM_022159	human	genbank	54_36p	-1	validated	missense	c.1544	p.L515P	1	HMMPfam_7tm_2	"HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EF_HAND_1,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
LOC729779	729779	genome.wustl.edu	36	1	79293223	79293223	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	79293223	79293223	G	A	SNP	LOC729779	XR_016024	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.85	-	-	-	pseudogene
LOC729828	729828	genome.wustl.edu	36	1	81960068	81960068	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	81960068	81960068	G	A	SNP	LOC729828	XR_015671	human	genbank	54_36p	1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
LOC729828	729828	genome.wustl.edu	36	1	81961201	81961201	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	81961201	81961201	T	C	SNP	LOC729828	XR_015671	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MCOLN2	255231	genome.wustl.edu	36	1	85194704	85194704	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	85194704	85194704	A	G	SNP	MCOLN2	NM_153259	human	genbank	54_36p	-1	reviewed	missense	c.563	p.L188P	0.87	NULL	HMMPfam_Ion_trans	-	no_errors
SYDE2	84144	genome.wustl.edu	36	1	85428505	85428505	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	85428505	85428505	A	C	SNP	SYDE2	NM_032184	human	genbank	54_36p	-1	validated	missense	c.1264	p.S422A	0.27	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
C1orf52	148423	genome.wustl.edu	36	1	85497664	85497664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	85497664	85497664	C	G	SNP	C1orf52	NM_198077	human	genbank	54_36p	-1	validated	missense	c.241	p.D81H	1	NULL	NULL	-	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86106812	86106812	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86106812	86106812	C	T	SNP	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	missense	c.3278	p.R1093K	0.92	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86270166	86270173	+	Frame_Shift_Del	DEL	CCGGAGGA	CCGGAGGA	-	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	CCGGAGGA	CCGGAGGA	CCGGAGGA	-	CCGGAGGA	CCGGAGGA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86270166	86270173	CCGGAGGA	-	DEL	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	frame_shift_del	c.2032_2025	p.P676fs	0.994:0.956:0.998:1.000:1.000:1.000:0.999:0.978	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	"(deletion:cds_exon[86270149,86270193])"	no_errors
COL24A1	255631	genome.wustl.edu	36	1	86297400	86297400	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86297400	86297400	C	A	SNP	COL24A1	NM_152890	human	genbank	54_36p	-1	validated	missense	c.1798	p.G600C	1	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
CLCA2	9635	genome.wustl.edu	36	1	86672867	86672867	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	86672867	86672867	G	T	SNP	CLCA2	NM_006536	human	genbank	54_36p	1	reviewed	missense	c.823	p.A275S	0.74	NULL	"HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973"	-	no_errors
NOC2L	26155	genome.wustl.edu	36	1	871755	871755	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	871755	871755	T	G	SNP	NOC2L	NM_015658	human	genbank	54_36p	-1	validated	missense	c.1693	p.N565H	1	HMMPfam_Noc2	HMMPfam_Noc2	-	no_errors
ENO1	2023	genome.wustl.edu	36	1	8846605	8846605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	8846605	8846605	G	A	SNP	ENO1	NM_001428	human	genbank	54_36p	-1	reviewed	silent	c.999	p.N333	0	"superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C"	"HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like,superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C,PatternScan_ENOLASE"	-	no_errors
ENO1	2023	genome.wustl.edu	36	1	8849058	8849058	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	8849058	8849058	G	A	SNP	ENO1	NM_001428	human	genbank	54_36p	-1	reviewed	silent	c.534	p.F178	1	"HMMPfam_Enolase_C,superfamily_Enolase C-terminal domain-like"	"HMMPfam_Enolase_C,HMMPfam_Enolase_N,PatternScan_ENOLASE,superfamily_Enolase C-terminal domain-like,superfamily_Enolase N-terminal domain-like"	-	no_errors
GBP1	2633	genome.wustl.edu	36	1	89295139	89295139	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	89295139	89295139	G	A	SNP	GBP1	NM_002053	human	genbank	54_36p	-1	validated	nonsense	c.1141	p.Q381*	1	"HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
GBP2	2634	genome.wustl.edu	36	1	89358540	89358540	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	89358540	89358540	G	A	SNP	GBP2	NM_004120	human	genbank	54_36p	-1	reviewed	missense	c.338	p.S113F	1	"superfamily_SSF52540,HMMPfam_GBP"	"superfamily_SSF52540,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_GBP"	-	no_errors
GBP7	388646	genome.wustl.edu	36	1	89410183	89410183	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	89410183	89410183	T	A	SNP	GBP7	NM_207398	human	genbank	54_36p	-1	validated	silent	c.24	p.P8	0	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
LRRC8D	55144	genome.wustl.edu	36	1	90172643	90172643	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	90172643	90172643	G	C	SNP	LRRC8D	NM_018103	human	genbank	54_36p	1	validated	silent	c.1428	p.L476	0.86	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
SLC2A5	6518	genome.wustl.edu	36	1	9021500	9021500	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	9021500	9021500	C	T	SNP	SLC2A5	NM_003039	human	genbank	54_36p	-1	validated	missense	c.1072	p.V358M	0.82	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
ZNF326	284695	genome.wustl.edu	36	1	90255585	90255585	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	90255585	90255585	G	T	SNP	ZNF326	NM_182976	human	genbank	54_36p	1	validated	missense	c.1048	p.D350Y	1	HMMPfam_AKAP95	HMMPfam_AKAP95	-	no_errors
BARHL2	343472	genome.wustl.edu	36	1	90950709	90950709	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	90950709	90950709	G	C	SNP	BARHL2	NM_020063	human	genbank	54_36p	-1	validated	nonsense	c.912	p.Y304*	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
LOC646784	646784	genome.wustl.edu	36	1	91262861	91262861	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	91262861	91262861	C	T	SNP	LOC646784	XR_017249	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HFM1	164045	genome.wustl.edu	36	1	91554067	91554067	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	1	91554067	91554067	T	C	SNP	HFM1	NM_001017975	human	genbank	54_36p	-1	validated	silent	c.3033	p.L1011	0.97	HMMPfam_Sec63	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_Sec63"	-	no_errors
TGFBR3	7049	genome.wustl.edu	36	1	91936263	91936263	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	91936263	91936263	C	G	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	missense	c.2300	p.S767T	0.23	NULL	"HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1"	-	no_errors
TGFBR3	7049	genome.wustl.edu	36	1	91958158	91958158	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	91958158	91958158	G	A	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	silent	c.1293	p.S431	0	NULL	"HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1"	-	no_errors
BRDT	676	genome.wustl.edu	36	1	92214479	92214479	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	92214479	92214479	T	G	SNP	BRDT	NM_001726	human	genbank	54_36p	1	validated	missense	c.514	p.F172V	0	NULL	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
EVI5	7813	genome.wustl.edu	36	1	92751926	92751926	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	92751926	92751926	G	T	SNP	EVI5	NM_005665	human	genbank	54_36p	-1	validated	missense	c.2308	p.P770T	0.96	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
CCDC18	343099	genome.wustl.edu	36	1	93450248	93450248	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	93450248	93450248	T	G	SNP	CCDC18	NM_206886	human	genbank	54_36p	1	validated	missense	c.1691	p.I564S	1	NULL	superfamily_Prefoldin	-	no_errors
BCAR3	8412	genome.wustl.edu	36	1	93827462	93827462	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	93827462	93827462	G	C	SNP	BCAR3	NM_003567	human	genbank	54_36p	-1	reviewed	missense	c.589	p.Q197E	1	"superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2"	"superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00147"	-	no_errors
GCLM	2730	genome.wustl.edu	36	1	94134880	94134880	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	94134880	94134880	T	C	SNP	GCLM	NM_002061	human	genbank	54_36p	-1	reviewed	missense	c.422	p.E141G	1	superfamily_NAD(P)-linked oxidoreductase	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	-	no_errors
ABCA4	24	genome.wustl.edu	36	1	94301362	94301362	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	94301362	94301362	C	A	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.1654	p.V552L	0.97	NULL	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA4	24	genome.wustl.edu	36	1	94321512	94321512	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	94321512	94321512	G	A	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.842	p.S281L	1	NULL	"HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
DPYD	1806	genome.wustl.edu	36	1	97787702	97787702	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	97787702	97787702	A	T	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	splice_site	c.1524+2	e12+2	1	-	-	-	no_errors
DPYD	1806	genome.wustl.edu	36	1	97787842	97787842	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	97787842	97787842	T	G	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	silent	c.1386	p.P462	1	HMMPfam_Pyr_redox_2	"superfamily_Helical_ferredxn,superfamily_SSF51971,HMMPfam_Pyr_redox_2,superfamily_SSF51395,HMMPfam_DHO_dh,superfamily_SSF54862,HMMPfam_Fer4,PatternScan_4FE4S_FER_1"	-	no_errors
DPYD	1806	genome.wustl.edu	36	1	97929868	97929868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	A	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	97929868	97929868	C	A	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	missense	c.755	p.G252V	1	"HMMPfam_Pyr_redox_2,superfamily_SSF51971"	"HMMPfam_Fer4,superfamily_Helical_ferredxn,HMMPfam_DHO_dh,HMMPfam_Pyr_redox_2,PatternScan_4FE4S_FER_1,superfamily_SSF51395,superfamily_SSF51971,superfamily_SSF54862"	-	no_errors
PAP2D	163404	genome.wustl.edu	36	1	99152987	99152987	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	99152987	99152987	C	T	SNP	PAP2D	NM_001037317	human	genbank	54_36p	-1	reviewed	missense	c.876	p.M292I	1	NULL	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	-	no_errors
LPPR4	9890	genome.wustl.edu	36	1	99544845	99544845	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	99544845	99544845	C	T	SNP	LPPR4	NM_014839	human	genbank	54_36p	1	reviewed	silent	c.1983	p.Y661	0.99	NULL	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	-	no_errors
LOXL4	84171	genome.wustl.edu	36	10	100001368	100001368	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	100001368	100001368	A	G	SNP	LOXL4	NM_032211	human	genbank	54_36p	-1	reviewed	missense	c.2033	p.I678T	1	HMMPfam_Lysyl_oxidase	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE"	-	no_errors
ENTPD7	57089	genome.wustl.edu	36	10	101429140	101429140	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	101429140	101429140	C	A	SNP	ENTPD7	NM_020354	human	genbank	54_36p	1	validated	missense	c.324	p.N108K	1	HMMPfam_GDA1_CD39	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
CHUK	1147	genome.wustl.edu	36	10	101968473	101968473	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	101968473	101968473	G	A	SNP	CHUK	NM_001278	human	genbank	54_36p	-1	reviewed	silent	c.789	p.S263	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BLOC1S2	282991	genome.wustl.edu	36	10	102035928	102035928	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102035928	102035928	T	C	SNP	BLOC1S2	NM_173809	human	genbank	54_36p	-1	validated	missense	c.88	p.K30E	0.82	HMMPfam_BLOC1_2	HMMPfam_BLOC1_2	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102046741	102046741	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102046741	102046741	G	T	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	missense	c.1171	p.L391M	1	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102049456	102049456	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102049456	102049456	C	A	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	missense	c.359	p.G120V	1	NULL	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
C10orf2	56652	genome.wustl.edu	36	10	102738267	102738267	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102738267	102738267	A	T	SNP	C10orf2	NM_021830	human	genbank	54_36p	1	validated	missense	c.310	p.I104F	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LZTS2	84445	genome.wustl.edu	36	10	102753671	102753673	+	In_Frame_Del	DEL	TCC	TCC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TCC	TCC	TCC	-	TCC	TCC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102753671	102753673	TCC	-	DEL	LZTS2	NM_032429	human	genbank	54_36p	1	provisional	in_frame_del	c.826_828	p.S279in_frame_del	0.987:0.996:0.980	NULL	HMMPfam_Fez1	"(deletion:cds_exon[102753254,102753913])"	no_errors
SFXN3	81855	genome.wustl.edu	36	10	102786216	102786231	+	Splice_Site	DEL	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	-	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	-	GGCTTTTCCACCCACA	GGCTTTTCCACCCACA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	102786216	102786231	GGCTTTTCCACCCACA	-	DEL	SFXN3	NM_030971	human	genbank	54_36p	1	validated	splice_site_del	c.444-17_444-2	e5-2	0.195:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.066:0.543:0.964:0.983:0.997:1.000	-	-	"(deletion:intron[102785849,102786232])"	no_errors
BTRC	8945	genome.wustl.edu	36	10	103211767	103211767	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	103211767	103211767	C	T	SNP	BTRC	NM_033637	human	genbank	54_36p	1	reviewed	missense	c.196	p.P66S	1	NULL	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
MGEA5	10724	genome.wustl.edu	36	10	103536257	103536257	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	103536257	103536257	C	A	SNP	MGEA5	NM_012215	human	genbank	54_36p	-1	validated	nonsense	c.2692	p.E898*	1	superfamily_Acyl-CoA N-acyltransferases (Nat)	"HMMPfam_NAGidase,superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
GBF1	8729	genome.wustl.edu	36	10	104101604	104101604	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	104101604	104101604	G	C	SNP	GBF1	NM_004193	human	genbank	54_36p	1	provisional	silent	c.429	p.L143	1	NULL	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7"	-	no_errors
PSD	5662	genome.wustl.edu	36	10	104166563	104166564	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	104166563	104166564	-	G	INS	PSD	NM_002779	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.223_222	p.S74fs	0.121:0.115	NULL	"HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
TRIM8	81603	genome.wustl.edu	36	10	104407016	104407016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	104407016	104407016	G	C	SNP	TRIM8	NM_030912	human	genbank	54_36p	1	validated	missense	c.1571	p.W524S	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
INA	9118	genome.wustl.edu	36	10	105038213	105038213	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105038213	105038213	A	C	SNP	INA	NM_032727	human	genbank	54_36p	1	validated	missense	c.1297	p.S433R	0.47	NULL	"HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF"	-	no_errors
TAF5	6877	genome.wustl.edu	36	10	105132993	105132993	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105132993	105132993	C	G	SNP	TAF5	NM_006951	human	genbank	54_36p	1	reviewed	missense	c.1543	p.L515V	1	superfamily_WD40 repeat-like	"HMMPfam_TFIID_90kDa,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CALHM1	255022	genome.wustl.edu	36	10	105208155	105208155	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105208155	105208155	A	C	SNP	CALHM1	NM_001001412	human	genbank	54_36p	-1	validated	missense	c.344	p.V115G	1	NULL	NULL	-	no_errors
C10orf79	80217	genome.wustl.edu	36	10	105917365	105917365	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105917365	105917365	G	C	SNP	C10orf79	ENST00000278064	human	ensembl	54_36p	-1	known	missense	c.2605	p.L869V	0.05	NULL	"superfamily_WD40_like,HMMSmart_WD40"	-	no_errors
C10orf79	80217	genome.wustl.edu	36	10	105942019	105942019	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	105942019	105942019	C	T	SNP	C10orf79	NM_025145	human	genbank	54_36p	-1	predicted	missense	c.1474	p.G492R	0.45	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
CCDC147	159686	genome.wustl.edu	36	10	106108143	106108143	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	106108143	106108143	G	C	SNP	CCDC147	NM_001008723	human	genbank	54_36p	1	validated	missense	c.64	p.D22H	1	NULL	NULL	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	106972958	106972958	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	106972958	106972958	G	T	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	silent	c.2829	p.G943	0.99	superfamily_PKD	"superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD"	-	no_errors
SORCS3	22986	genome.wustl.edu	36	10	107012229	107012229	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	107012229	107012229	G	A	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	silent	c.3594	p.T1198	0.88	NULL	"HMMPfam_PKD,superfamily_PKD,HMMSmart_VPS10,superfamily_SSF110296"	-	no_errors
XPNPEP1	7511	genome.wustl.edu	36	10	111618436	111618436	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111618436	111618436	G	A	SNP	XPNPEP1	NM_020383	human	genbank	54_36p	-1	provisional	silent	c.1669	p.L557	1	"superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24"	"HMMPfam_Creatinase_N,superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE"	-	no_errors
XPNPEP1	7511	genome.wustl.edu	36	10	111620629	111620629	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111620629	111620629	G	C	SNP	XPNPEP1	NM_020383	human	genbank	54_36p	-1	provisional	missense	c.1417	p.R473G	1	"HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase"	"HMMPfam_Creatinase_N,HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase,PatternScan_PROLINE_PEPTIDASE"	-	no_errors
ADD3	120	genome.wustl.edu	36	10	111882060	111882060	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111882060	111882060	G	C	SNP	ADD3	NM_016824	human	genbank	54_36p	1	reviewed	missense	c.1740	p.E580D	1	NULL	"superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II"	-	no_errors
VTI1A	143187	genome.wustl.edu	36	10	114565097	114565097	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	114565097	114565097	C	G	SNP	VTI1A	NM_145206	human	genbank	54_36p	1	validated	missense	c.619	p.L207V	1	NULL	"HMMPfam_V-SNARE,HMMSmart_t_SNARE"	-	no_errors
TCF7L2	6934	genome.wustl.edu	36	10	114839151	114839151	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	114839151	114839151	C	G	SNP	TCF7L2	ENST00000352065	human	ensembl	54_36p	1	known	missense	c.489	p.S163R	1	HMMPfam_CTNNB1_binding	"HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
HABP2	3026	genome.wustl.edu	36	10	115328441	115328441	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115328441	115328441	C	T	SNP	HABP2	NM_004132	human	genbank	54_36p	1	reviewed	nonsense	c.634	p.Q212*	0.25	"superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle"	###############################################################################################################################################################################################################################################################	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115358206	115358206	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115358206	115358206	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.3659	p.P1220H	1	"HMMSmart_SM00227,HMMPfam_Nebulin"	"HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin"	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115390036	115390036	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115390036	115390036	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.1368	p.N456K	1	NULL	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
NRAP	4892	genome.wustl.edu	36	10	115402747	115402747	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115402747	115402747	G	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.507	p.S169R	1	NULL	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
NHLRC2	374354	genome.wustl.edu	36	10	115658198	115658198	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	115658198	115658198	G	A	SNP	NHLRC2	NM_198514	human	genbank	54_36p	1	provisional	missense	c.2094	p.M698I	1	NULL	"superfamily_Thioredoxin-like,superfamily_NHL repeat,HMMPfam_NHL"	-	no_errors
AFAP1L2	84632	genome.wustl.edu	36	10	116050271	116050271	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	116050271	116050271	C	T	SNP	AFAP1L2	NM_001001936	human	genbank	54_36p	-1	validated	missense	c.1711	p.A571T	0	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
ABLIM1	3983	genome.wustl.edu	36	10	116407732	116407732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	116407732	116407732	C	T	SNP	ABLIM1	NM_002313	human	genbank	54_36p	-1	reviewed	missense	c.218	p.R73H	0	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	116879136	116879136	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	116879136	116879136	T	C	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	silent	c.678	p.S226	0.1	"superfamily_EGF/Laminin,HMMSmart_SM00181"	###############################################################################################################################################################################################################################################################	-	no_errors
ATRNL1	26033	genome.wustl.edu	36	10	117144159	117144159	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	117144159	117144159	C	G	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	missense	c.3176	p.A1059G	1	"PatternScan_EGF_LAM_1,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
GFRA1	2674	genome.wustl.edu	36	10	117874815	117874815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	117874815	117874815	C	A	SNP	GFRA1	NM_005264	human	genbank	54_36p	-1	reviewed	missense	c.677	p.R226L	1	"superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF"	"superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF"	-	no_errors
C10orf96	374355	genome.wustl.edu	36	10	118106897	118106897	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118106897	118106897	A	G	SNP	C10orf96	NM_198515	human	genbank	54_36p	1	validated	missense	c.464	p.E155G	1	NULL	NULL	-	no_errors
PNLIPRP3	119548	genome.wustl.edu	36	10	118226224	118226224	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118226224	118226224	A	T	SNP	PNLIPRP3	NM_001011709	human	genbank	54_36p	1	validated	missense	c.1243	p.S415C	0.74	"superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,PatternScan_HMG_COA_REDUCTASE_1"	-	no_errors
PNLIP	5406	genome.wustl.edu	36	10	118308707	118308707	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118308707	118308707	G	A	SNP	PNLIP	NM_000936	human	genbank	54_36p	1	reviewed	missense	c.982	p.A328T	1	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
PNLIPRP1	5407	genome.wustl.edu	36	10	118345822	118345822	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118345822	118345822	C	A	SNP	PNLIPRP1	NM_006229	human	genbank	54_36p	1	provisional	missense	c.572	p.T191K	1	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
VAX1	11023	genome.wustl.edu	36	10	118881738	118881738	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118881738	118881738	G	T	SNP	VAX1	NM_199131	human	genbank	54_36p	-1	reviewed	missense	c.533	p.S178Y	0	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
VAX1	11023	genome.wustl.edu	36	10	118885982	118885982	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	118885982	118885982	G	A	SNP	VAX1	NM_199131	human	genbank	54_36p	-1	reviewed	silent	c.420	p.S140	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	-	no_errors
C10orf84	63877	genome.wustl.edu	36	10	120075697	120075697	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	120075697	120075697	C	A	SNP	C10orf84	NM_022063	human	genbank	54_36p	-1	validated	nonsense	c.502	p.E168*	1	NULL	NULL	-	no_errors
LOC729666	729666	genome.wustl.edu	36	10	120682652	120682652	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	120682652	120682652	T	A	SNP	LOC729666	XR_015620	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
GRK5	2869	genome.wustl.edu	36	10	121083300	121083300	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121083300	121083300	C	G	SNP	GRK5	ENST00000369106	human	ensembl	54_36p	1	known	missense	c.180	p.S60R	0	NULL	NULL	-	no_errors
BAG3	9531	genome.wustl.edu	36	10	121422103	121422103	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121422103	121422103	C	T	SNP	BAG3	NM_004281	human	genbank	54_36p	1	reviewed	missense	c.854	p.T285M	0.75	NULL	"superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF63491,HMMPfam_BAG,HMMSmart_BAG"	-	no_errors
BAG3	9531	genome.wustl.edu	36	10	121426356	121426356	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121426356	121426356	G	A	SNP	BAG3	NM_004281	human	genbank	54_36p	1	reviewed	missense	c.1300	p.G434R	0.31	"HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491"	"HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491"	-	no_errors
INPP5F	22876	genome.wustl.edu	36	10	121577046	121577046	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121577046	121577046	G	T	SNP	INPP5F	NM_014937	human	genbank	54_36p	1	reviewed	missense	c.3163	p.V1055L	0.03	NULL	HMMPfam_Syja_N	-	no_errors
C10orf119	79892	genome.wustl.edu	36	10	121609371	121609371	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121609371	121609371	T	A	SNP	C10orf119	NM_024834	human	genbank	54_36p	-1	validated	missense	c.74	p.N25I	0.98	NULL	HMMPfam_DUF2044	-	no_errors
SEC23IP	11196	genome.wustl.edu	36	10	121667951	121667951	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	121667951	121667951	T	G	SNP	SEC23IP	NM_007190	human	genbank	54_36p	1	reviewed	missense	c.1810	p.C604G	0.06	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_DDHD"	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123832305	123832305	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	123832305	123832305	G	A	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	silent	c.300	p.P100	0	NULL	HMMPfam_TACC	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123833228	123833228	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	123833228	123833228	C	T	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.1223	p.S408F	0	NULL	HMMPfam_TACC	-	no_errors
TACC2	10579	genome.wustl.edu	36	10	123837268	123837268	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	123837268	123837268	G	T	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.5263	p.A1755S	0	NULL	HMMPfam_TACC	-	no_errors
DMBT1	1755	genome.wustl.edu	36	10	124380761	124380761	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124380761	124380761	G	A	SNP	DMBT1	NM_007329	human	genbank	54_36p	1	reviewed	missense	c.5933	p.R1978H	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
LOC729794	729794	genome.wustl.edu	36	10	124479050	124479050	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124479050	124479050	G	A	SNP	LOC729794	XM_001718748	human	genbank	54_36p	1	model	silent	c.279	p.V93	0.02	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
FAM24A	118670	genome.wustl.edu	36	10	124662386	124662386	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124662386	124662386	T	C	SNP	FAM24A	NM_001029888	human	genbank	54_36p	1	inferred	missense	c.244	p.C82R	0.12	NULL	NULL	-	no_errors
ACADSB	36	genome.wustl.edu	36	10	124792672	124792672	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	124792672	124792672	G	A	SNP	ACADSB	NM_001609	human	genbank	54_36p	1	reviewed	missense	c.802	p.V268I	1	superfamily_Acyl-CoA dehydrogenase NM domain-like	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_Acyl-CoA_dh_1,PatternScan_ACYL_COA_DH_2"	-	no_errors
CPXM2	119587	genome.wustl.edu	36	10	125496310	125496310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	125496310	125496310	C	T	SNP	CPXM2	NM_198148	human	genbank	54_36p	-1	validated	missense	c.2231	p.R744Q	0.95	superfamily_Carboxypeptidase regulatory domain	###############################################################################################################################################################################################################################################################	-	no_errors
C10orf137	26098	genome.wustl.edu	36	10	127399835	127399835	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127399835	127399835	C	G	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	missense	c.181	p.R61G	0.99	NULL	NULL	-	no_errors
MMP21	118856	genome.wustl.edu	36	10	127445243	127445243	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127445243	127445243	T	C	SNP	MMP21	NM_147191	human	genbank	54_36p	-1	reviewed	missense	c.1688	p.H563R	0.99	NULL	"superfamily_PGBD-like,HMMPfam_PG_binding_1,HMMSmart_SM00235,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M10,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	-	no_errors
DHX32	55760	genome.wustl.edu	36	10	127516947	127516947	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127516947	127516947	C	G	SNP	DHX32	NM_018180	human	genbank	54_36p	-1	reviewed	splice_site	c.1882-1	e10-1	1	-	-	-	no_errors
ADAM12	8038	genome.wustl.edu	36	10	127833840	127833840	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	127833840	127833840	C	T	SNP	ADAM12	NM_003474	human	genbank	54_36p	-1	reviewed	silent	c.285	p.T95	0.92	HMMPfam_Pep_M12B_propep	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM12	8038	genome.wustl.edu	36	10	128009048	128009048	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	128009048	128009048	C	T	SNP	ADAM12	NM_003474	human	genbank	54_36p	-1	reviewed	missense	c.109	p.G37R	0	HMMPfam_Pep_M12B_propep	###############################################################################################################################################################################################################################################################	-	no_errors
C10orf90	118611	genome.wustl.edu	36	10	128104618	128104619	+	Nonsense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	TC	TC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	128104618	128104619	TC	AA	DNP	C10orf90	NM_001004298	human	genbank	54_36p	-1	validated	nonsense	c.1993_1992	p.KKK664N*	1.000:1.000	NULL	NULL	-	no_errors
CAMK1D	57118	genome.wustl.edu	36	10	12898306	12898306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	12898306	12898306	C	T	SNP	CAMK1D	NM_153498	human	genbank	54_36p	1	reviewed	missense	c.806	p.T269M	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DOCK1	1793	genome.wustl.edu	36	10	129062457	129062457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	129062457	129062457	G	A	SNP	DOCK1	ENST00000398025	human	ensembl	54_36p	1	known	missense	c.3799	p.V1267I	1	NULL	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Cytochrome_c"	-	no_errors
MKI67	4288	genome.wustl.edu	36	10	129791228	129791228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	129791228	129791228	G	C	SNP	MKI67	NM_002417	human	genbank	54_36p	-1	reviewed	missense	c.8866	p.L2956V	0.05	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMPfam_K167R"	-	no_errors
MKI67	4288	genome.wustl.edu	36	10	129795130	129795130	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	129795130	129795130	G	A	SNP	MKI67	NM_002417	human	genbank	54_36p	-1	reviewed	missense	c.4964	p.T1655I	0	HMMPfam_K167R	"HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R"	-	no_errors
CCDC3	83643	genome.wustl.edu	36	10	12980651	12980651	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	12980651	12980651	T	A	SNP	CCDC3	NM_031455	human	genbank	54_36p	-1	validated	missense	c.584	p.E195V	1	NULL	NULL	-	no_errors
TCERG1L	256536	genome.wustl.edu	36	10	132822665	132822665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	132822665	132822665	C	G	SNP	TCERG1L	NM_174937	human	genbank	54_36p	-1	validated	missense	c.1226	p.R409T	0	NULL	"PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,superfamily_FF,HMMSmart_FF,HMMPfam_FF"	-	no_errors
SYCE1	93426	genome.wustl.edu	36	10	135219322	135219322	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	135219322	135219322	G	T	SNP	SYCE1	NM_130784	human	genbank	54_36p	-1	validated	missense	c.563	p.T188N	0	NULL	NULL	-	no_errors
DCLRE1C	64421	genome.wustl.edu	36	10	15016413	15016413	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15016413	15016413	G	T	SNP	DCLRE1C	NM_001033855	human	genbank	54_36p	-1	reviewed	missense	c.650	p.T217N	1	NULL	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_DRMBL"	-	no_errors
MEIG1	644890	genome.wustl.edu	36	10	15048569	15048569	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	15048569	15048569	T	A	SNP	MEIG1	NM_001080836	human	genbank	54_36p	1	validated	nonsense	c.96	p.Y32*	1	NULL	NULL	-	no_errors
NMT2	9397	genome.wustl.edu	36	10	15201474	15201474	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15201474	15201474	G	C	SNP	NMT2	NM_004808	human	genbank	54_36p	-1	reviewed	missense	c.1044	p.I348M	1	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_NMT_C"	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_NMT,PatternScan_NMT_1,HMMPfam_NMT_C,PatternScan_NMT_2"	-	no_errors
FAM171A1	221061	genome.wustl.edu	36	10	15296371	15296371	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15296371	15296371	C	A	SNP	FAM171A1	NM_001010924	human	genbank	54_36p	-1	validated	missense	c.1222	p.G408W	0.71	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
ITGA8	8516	genome.wustl.edu	36	10	15640161	15640161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15640161	15640161	C	T	SNP	ITGA8	NM_003638	human	genbank	54_36p	-1	provisional	missense	c.2684	p.R895Q	0.64	"HMMPfam_Integrin_alpha2,superfamily_SSF69179"	"superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ITGA8	8516	genome.wustl.edu	36	10	15766093	15766093	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	15766093	15766093	T	C	SNP	ITGA8	NM_003638	human	genbank	54_36p	-1	provisional	missense	c.484	p.T162A	0	superfamily_SSF69318	"HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF69179,superfamily_SSF69318"	-	no_errors
PTER	9317	genome.wustl.edu	36	10	16566430	16566430	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	16566430	16566430	T	C	SNP	PTER	NM_001001484	human	genbank	54_36p	1	validated	missense	c.41	p.L14P	0.01	superfamily_Metallo-dependent hydrolases	"superfamily_Metallo-dependent hydrolases,HMMPfam_PTE,PatternScan_PHOSPHOTRIESTERASE_1"	-	no_errors
PTER	9317	genome.wustl.edu	36	10	16568623	16568623	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	16568623	16568623	G	C	SNP	PTER	NM_001001484	human	genbank	54_36p	1	validated	splice_site	c.698+1	e2+1	1	-	-	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17020969	17020969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17020969	17020969	C	G	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.5732	p.R1911T	1	"HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_CUB"	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17022062	17022062	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17022062	17022062	C	A	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	silent	c.5523	p.T1841	0	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
CUBN	8029	genome.wustl.edu	36	10	17125901	17125901	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17125901	17125901	T	A	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.3760	p.S1254C	0.94	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
ST8SIA6	338596	genome.wustl.edu	36	10	17403280	17403280	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17403280	17403280	A	C	SNP	ST8SIA6	NM_001004470	human	genbank	54_36p	-1	validated	missense	c.800	p.L267R	0.14	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
STAM	8027	genome.wustl.edu	36	10	17770087	17770087	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	17770087	17770087	A	G	SNP	STAM	NM_003473	human	genbank	54_36p	1	reviewed	missense	c.353	p.E118G	1	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288"	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,HMMPfam_UIM,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
CACNB2	783	genome.wustl.edu	36	10	18827469	18827469	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	18827469	18827469	T	A	SNP	CACNB2	ENST00000402317	human	ensembl	54_36p	1	known	missense	c.351	p.F117L	0	NULL	superfamily_SH3-domain	-	no_errors
NSUN6	221078	genome.wustl.edu	36	10	18980066	18980066	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	18980066	18980066	C	A	SNP	NSUN6	NM_182543	human	genbank	54_36p	-1	validated	nonsense	c.73	p.E25*	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_PUA domain-like,HMMPfam_PUA,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN"	-	no_errors
C10orf113	387638	genome.wustl.edu	36	10	21454980	21454980	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	21454980	21454980	T	A	SNP	C10orf113	NM_001010896	human	genbank	54_36p	-1	predicted	missense	c.216	p.Q72H	0.78	NULL	NULL	-	no_errors
C10orf140	387640	genome.wustl.edu	36	10	21844172	21844172	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	21844172	21844172	C	A	SNP	C10orf140	NM_207371	human	genbank	54_36p	-1	validated	silent	c.2586	p.G862	1	NULL	"superfamily_Putative DNA-binding domain,HMMPfam_Ski_Sno,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PIP4K2A	5305	genome.wustl.edu	36	10	22866155	22866155	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	10	22866155	22866155	A	T	SNP	PIP4K2A	NM_005028	human	genbank	54_36p	-1	reviewed	missense	c.1202	p.I401N	1	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	no_errors
KIAA1217	56243	genome.wustl.edu	36	10	24802216	24802216	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24802216	24802216	C	T	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	silent	c.900	p.P300	0.23	NULL	NULL	-	no_errors
KIAA1217	56243	genome.wustl.edu	36	10	24802221	24802221	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24802221	24802221	C	T	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	missense	c.905	p.S302F	0.89	NULL	NULL	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24914568	24914568	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24914568	24914568	C	T	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	silent	c.4653	p.T1551	0.55	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24926891	24926891	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24926891	24926891	G	C	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.3183	p.N1061K	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ARHGAP21	57584	genome.wustl.edu	36	10	24948443	24948443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	24948443	24948443	G	T	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.2384	p.P795Q	0.89	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25926869	25926869	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	25926869	25926869	T	C	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	missense	c.2308	p.S770P	1	NULL	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_7tm_3"	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25927612	25927612	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	25927612	25927612	T	C	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	silent	c.3051	p.G1017	0.9	NULL	"HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GPR158	57512	genome.wustl.edu	36	10	25927883	25927883	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	25927883	25927883	C	T	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	missense	c.3322	p.R1108C	0	NULL	"HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
MYO3A	53904	genome.wustl.edu	36	10	26503059	26503059	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	26503059	26503059	C	A	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.3860	p.P1287H	0.13	superfamily_SSF52540	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
MYO3A	53904	genome.wustl.edu	36	10	26503397	26503397	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	26503397	26503397	C	T	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.4198	p.H1400Y	0	NULL	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540"	-	no_errors
LOC387646	387646	genome.wustl.edu	36	10	27579509	27579509	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	27579509	27579509	G	A	SNP	LOC387646	NR_003525	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0	-	-	-	pseudogene
PTCHD3	374308	genome.wustl.edu	36	10	27727657	27727657	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	27727657	27727657	C	G	SNP	PTCHD3	NM_001034842	human	genbank	54_36p	-1	validated	missense	c.1876	p.G626R	0.99	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
ARMC4	55130	genome.wustl.edu	36	10	28268882	28268882	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	28268882	28268882	T	A	SNP	ARMC4	NM_018076	human	genbank	54_36p	-1	validated	missense	c.2047	p.N683Y	0.77	"superfamily_ARM repeat,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm"	-	no_errors
MPP7	143098	genome.wustl.edu	36	10	28448650	28448650	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	28448650	28448650	C	G	SNP	MPP7	NM_173496	human	genbank	54_36p	-1	validated	missense	c.888	p.R296S	1	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2"	"HMMSmart_L27,HMMPfam_L27,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SSF52540,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin"	-	no_errors
WAC	51322	genome.wustl.edu	36	10	28940858	28940858	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	28940858	28940858	G	T	SNP	WAC	NM_016628	human	genbank	54_36p	1	reviewed	splice_site	c.1437+1	e10+1	1	-	-	-	no_errors
LOC653665	653665	genome.wustl.edu	36	10	29228313	29228313	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29228313	29228313	T	C	SNP	LOC653665	XM_001723025	human	genbank	54_36p	-1	model	missense	c.68	p.K23R	1	"HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain"	"HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain,PatternScan_RIBOSOMAL_L21E"	-	pseudogene
SVIL	6840	genome.wustl.edu	36	10	29799398	29799398	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29799398	29799398	C	T	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.5656	p.V1886M	1	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262"	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
SVIL	6840	genome.wustl.edu	36	10	29813712	29813712	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29813712	29813712	T	A	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.4834	p.T1612S	1	"HMMSmart_SM00262,superfamily_Actin depolymerizing proteins"	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
SVIL	6840	genome.wustl.edu	36	10	29817606	29817606	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	29817606	29817606	G	C	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	silent	c.4278	p.V1426	1	NULL	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30355780	30355780	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30355780	30355780	C	T	SNP	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	silent	c.3303	p.P1101	0	NULL	NULL	-	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30357215	30357216	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30357215	30357216	CT	-	DEL	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	frame_shift_del	c.1868_1867	p.L624fs	1.000:1.000	NULL	NULL	"(deletion:cds_exon[30355038,30358801])"	no_errors
KIAA1462	57608	genome.wustl.edu	36	10	30357354	30357354	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30357354	30357354	C	A	SNP	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	nonsense	c.1729	p.E577*	1	NULL	NULL	-	no_errors
MTPAP	55149	genome.wustl.edu	36	10	30669248	30669248	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	30669248	30669248	C	T	SNP	MTPAP	NM_018109	human	genbank	54_36p	-1	validated	silent	c.468	p.Q156	0	NULL	"superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc"	-	no_errors
LOC645954	645954	genome.wustl.edu	36	10	31014301	31014301	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	31014301	31014301	C	T	SNP	LOC645954	XR_017086	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	no_errors
PITRM1	10531	genome.wustl.edu	36	10	3198518	3198518	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	3198518	3198518	C	T	SNP	PITRM1	NM_014889	human	genbank	54_36p	-1	validated	silent	c.321	p.E107	1	superfamily_LuxS/MPP-like metallohydrolase	"superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16_C,HMMPfam_M16C_assoc"	-	no_errors
KIF5B	3799	genome.wustl.edu	36	10	32369383	32369383	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	32369383	32369383	C	T	SNP	KIF5B	NM_004521	human	genbank	54_36p	-1	validated	missense	c.223	p.E75K	1	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin"	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
EPC1	80314	genome.wustl.edu	36	10	32621530	32621530	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	32621530	32621530	G	T	SNP	EPC1	NM_025209	human	genbank	54_36p	-1	provisional	silent	c.715	p.R239	1	NULL	"HMMPfam_EPL1,HMMPfam_E_Pc_C"	-	no_errors
C10orf68	79741	genome.wustl.edu	36	10	33040622	33040622	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	33040622	33040622	C	T	SNP	C10orf68	NM_024688	human	genbank	54_36p	1	validated	nonsense	c.448	p.Q150*	0.01	NULL	NULL	-	no_errors
NRP1	8829	genome.wustl.edu	36	10	33550667	33550667	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	33550667	33550667	C	G	SNP	NRP1	NM_003873	human	genbank	54_36p	-1	validated	missense	c.1268	p.G423A	1	"superfamily_Galactose-binding domain-like,HMMSmart_SM00231,PatternScan_FA58C_2"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1"	-	no_errors
PARD3	56288	genome.wustl.edu	36	10	34660243	34660254	+	In_Frame_Del	DEL	GACCCAGGGAAG	GACCCAGGGAAG	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	GACCCAGGGAAG	GACCCAGGGAAG	GACCCAGGGAAG	-	GACCCAGGGAAG	GACCCAGGGAAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	34660243	34660254	GACCCAGGGAAG	-	DEL	PARD3	NM_019619	human	genbank	54_36p	-1	provisional	in_frame_del	c.2650_2639	p.PSLG880in_frame_del	0.997:0.994:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.885:1.000	NULL	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	"(deletion:cds_exon[34660051,34660278])"	no_errors
CUL2	8453	genome.wustl.edu	36	10	35368017	35368017	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	35368017	35368017	C	T	SNP	CUL2	NM_003591	human	genbank	54_36p	-1	provisional	splice_site	c.715-1	e8-1	1	-	-	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37470809	37470809	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	37470809	37470809	T	G	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.810	p.D270E	0.03	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE"	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37526222	37526222	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	37526222	37526222	C	T	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	silent	c.2454	p.P818	0.02	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD30A	91074	genome.wustl.edu	36	10	37546763	37546763	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	37546763	37546763	T	G	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.3050	p.L1017R	0.02	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ZNF248	57209	genome.wustl.edu	36	10	38166609	38166609	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	38166609	38166609	G	A	SNP	ZNF248	NM_021045	human	genbank	54_36p	-1	provisional	silent	c.180	p.I60	0.86	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CCNYL2	414194	genome.wustl.edu	36	10	42285601	42285601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42285601	42285601	A	G	SNP	CCNYL2	XM_374787	human	genbank	54_36p	-1	model	missense	c.350	p.V117A	0.83	NULL	"HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Cyclin_N"	-	no_errors
BMS1	9790	genome.wustl.edu	36	10	42609420	42609420	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42609420	42609420	G	T	SNP	BMS1	NM_014753	human	genbank	54_36p	1	reviewed	missense	c.1204	p.G402W	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AARP2CN,HMMSmart_SM00785,HMMPfam_DUF663"	-	no_errors
BMS1	9790	genome.wustl.edu	36	10	42645856	42645856	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42645856	42645856	C	G	SNP	BMS1	NM_014753	human	genbank	54_36p	1	reviewed	missense	c.3598	p.R1200G	0.95	NULL	"HMMPfam_DUF663,HMMPfam_AARP2CN,HMMSmart_SM00785,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LOC399748	399748	genome.wustl.edu	36	10	43421077	43421077	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	43421077	43421077	C	A	SNP	LOC399748	XR_016318	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.93	-	-	-	pseudogene
ZNF32	7580	genome.wustl.edu	36	10	43460106	43460106	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	43460106	43460106	G	T	SNP	ZNF32	NM_001005368	human	genbank	54_36p	-1	validated	missense	c.220	p.Q74K	1	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RASSF4	83937	genome.wustl.edu	36	10	44787207	44787207	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	44787207	44787207	G	A	SNP	RASSF4	ENST00000374411	human	ensembl	54_36p	1	known	missense	c.316	p.V106M	0.03	NULL	"HMMSmart_SM00314,HMMPfam_RA"	-	no_start_codon
AGAP4	119016	genome.wustl.edu	36	10	45641482	45641482	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	45641482	45641482	C	T	SNP	AGAP4	NM_133446	human	genbank	54_36p	-1	provisional	missense	c.1879	p.V627I	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
DIP2C	22982	genome.wustl.edu	36	10	458810	458810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	458810	458810	G	A	SNP	DIP2C	NM_014974	human	genbank	54_36p	-1	reviewed	silent	c.558	p.S186	1	NULL	"PatternScan_AMP_BINDING,HMMPfam_DMAP_binding,superfamily_SSF56801,HMMPfam_AMP-binding"	-	no_errors
FAM21B	55747	genome.wustl.edu	36	10	47431114	47431114	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	47431114	47431114	G	C	SNP	FAM21B	NM_018232	human	genbank	54_36p	1	validated	missense	c.976	p.G326R	0.98	NULL	NULL	-	no_errors
ZNF488	118738	genome.wustl.edu	36	10	47991112	47991112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	47991112	47991112	C	A	SNP	ZNF488	NM_153034	human	genbank	54_36p	1	provisional	missense	c.574	p.L192M	0.92	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
GDF2	2658	genome.wustl.edu	36	10	48033912	48033912	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	48033912	48033912	G	C	SNP	GDF2	NM_016204	human	genbank	54_36p	-1	reviewed	missense	c.962	p.A321G	0.04	superfamily_Cystine-knot cytokines	"HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1"	-	no_errors
GDF2	2658	genome.wustl.edu	36	10	48036475	48036475	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	48036475	48036475	G	C	SNP	GDF2	NM_016204	human	genbank	54_36p	-1	reviewed	silent	c.225	p.V75	0.97	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines"	-	no_errors
AKR1C1	1645	genome.wustl.edu	36	10	5004864	5004864	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	5004864	5004864	C	T	SNP	AKR1C1	NM_001353	human	genbank	54_36p	1	reviewed	silent	c.769	p.L257	1	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red"	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
ERCC6	2074	genome.wustl.edu	36	10	50378606	50378606	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50378606	50378606	G	C	SNP	ERCC6	NM_000124	human	genbank	54_36p	-1	reviewed	missense	c.1669	p.R557G	1	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
ERCC6	2074	genome.wustl.edu	36	10	50378705	50378705	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50378705	50378705	G	A	SNP	ERCC6	NM_000124	human	genbank	54_36p	-1	reviewed	nonsense	c.1570	p.Q524*	1	"HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540"	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540"	-	no_errors
PARG	8505	genome.wustl.edu	36	10	50739698	50739698	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50739698	50739698	G	A	SNP	PARG	ENST00000402038	human	ensembl	54_36p	-1	known	missense	c.2147	p.T716I	0.75	HMMPfam_PARG_cat	HMMPfam_PARG_cat	-	no_errors
PARG	8505	genome.wustl.edu	36	10	50757751	50757751	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	50757751	50757751	A	G	SNP	PARG	ENST00000402038	human	ensembl	54_36p	-1	known	silent	c.1962	p.S654	1	HMMPfam_PARG_cat	HMMPfam_PARG_cat	-	no_errors
AGAP7	653268	genome.wustl.edu	36	10	51134838	51134838	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	51134838	51134838	G	A	SNP	AGAP7	NM_001077685	human	genbank	54_36p	-1	provisional	missense	c.1624	p.R542W	1	"superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
MSMB	4477	genome.wustl.edu	36	10	51232387	51232387	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	51232387	51232387	T	A	SNP	MSMB	NM_002443	human	genbank	54_36p	1	reviewed	missense	c.326	p.V109D	0	HMMPfam_PSP94	HMMPfam_PSP94	-	no_errors
MSMB	4477	genome.wustl.edu	36	10	51232394	51232394	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	51232394	51232394	A	G	SNP	MSMB	NM_138634	human	genbank	54_36p	1	reviewed	missense	c.227	p.N76S	0	NULL	HMMPfam_PSP94	-	no_errors
LOC729023	729023	genome.wustl.edu	36	10	52114870	52114870	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	52114870	52114870	A	T	SNP	LOC729023	XR_038278	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
MBL2	4153	genome.wustl.edu	36	10	54201258	54201258	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	54201258	54201258	G	T	SNP	MBL2	NM_000242	human	genbank	54_36p	-1	reviewed	silent	c.144	p.G48	1	NULL	"HMMPfam_Collagen,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55238564	55238564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	55238564	55238564	G	A	SNP	PCDH15	ENST00000395445	human	ensembl	54_36p	-1	known	missense	c.5252	p.S1751F	0	NULL	"HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin"	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55286974	55286974	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	55286974	55286974	G	T	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	missense	c.3773	p.T1258N	0.98	NULL	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin"	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55625469	55625469	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	55625469	55625469	G	A	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	silent	c.1285	p.L429	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
IPMK	253430	genome.wustl.edu	36	10	59656818	59656818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	59656818	59656818	G	A	SNP	IPMK	NM_152230	human	genbank	54_36p	-1	provisional	missense	c.365	p.A122V	1	"superfamily_SSF56104,HMMPfam_IPK"	"superfamily_SSF56104,HMMPfam_IPK"	-	no_errors
FBXO18	84893	genome.wustl.edu	36	10	5998369	5998369	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	5998369	5998369	A	T	SNP	FBXO18	NM_032807	human	genbank	54_36p	1	reviewed	missense	c.1885	p.I629F	0.99	superfamily_SSF52540	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540"	-	no_errors
BICC1	80114	genome.wustl.edu	36	10	60219104	60219104	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	60219104	60219104	C	A	SNP	BICC1	NM_001080512	human	genbank	54_36p	1	provisional	missense	c.677	p.P226H	1	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain"	-	no_errors
BICC1	80114	genome.wustl.edu	36	10	60230718	60230719	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	60230718	60230719	GG	TT	DNP	BICC1	NM_001080512	human	genbank	54_36p	1	provisional	missense	c.1921_1922	p.G641F	0.997:0.984	NULL	"HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00322,superfamily_SAM/Pointed domain,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
SLC16A9	220963	genome.wustl.edu	36	10	61083893	61083893	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	61083893	61083893	A	G	SNP	SLC16A9	NM_194298	human	genbank	54_36p	-1	validated	silent	c.897	p.A299	0.25	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
ANK3	288	genome.wustl.edu	36	10	61501621	61501621	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	61501621	61501621	G	C	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.9024	p.H3008Q	0.14	NULL	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
ANK3	288	genome.wustl.edu	36	10	61637909	61637909	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	61637909	61637909	T	C	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.1085	p.D362G	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like"	-	no_errors
PFKFB3	5209	genome.wustl.edu	36	10	6301630	6301630	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	6301630	6301630	C	G	SNP	PFKFB3	NM_004566	human	genbank	54_36p	1	validated	missense	c.591	p.S197R	1	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like,PatternScan_PG_MUTASE"	-	no_errors
ARID5B	84159	genome.wustl.edu	36	10	63486945	63486945	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	63486945	63486945	T	G	SNP	ARID5B	NM_032199	human	genbank	54_36p	1	validated	missense	c.910	p.S304A	0.98	superfamily_ARID-like	"superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
LRRTM3	347731	genome.wustl.edu	36	10	68527509	68527509	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	68527509	68527509	C	A	SNP	LRRTM3	NM_178011	human	genbank	54_36p	1	validated	missense	c.1695	p.S565R	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
CTNNA3	29119	genome.wustl.edu	36	10	68610279	68610279	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	68610279	68610279	T	C	SNP	CTNNA3	NM_013266	human	genbank	54_36p	-1	validated	silent	c.849	p.L283	1	HMMPfam_Vinculin	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin"	-	no_errors
DNA2	1763	genome.wustl.edu	36	10	69852350	69852350	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	69852350	69852350	T	A	SNP	DNA2	NM_001080449	human	genbank	54_36p	-1	provisional	missense	c.2678	p.E893V	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70076113	70076113	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70076113	70076113	T	G	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	silent	c.3621	p.P1207	0	NULL	HMMPfam_zf-CXXC	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70076261	70076261	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70076261	70076261	G	T	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	missense	c.3769	p.V1257F	0.88	NULL	HMMPfam_zf-CXXC	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70116184	70116184	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70116184	70116184	T	A	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	missense	c.5118	p.H1706Q	0.99	NULL	HMMPfam_zf-CXXC	-	no_errors
CCAR1	55749	genome.wustl.edu	36	10	70166669	70166669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70166669	70166669	T	C	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.104	p.L35P	1	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand"	-	no_errors
CCAR1	55749	genome.wustl.edu	36	10	70177005	70177005	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70177005	70177005	G	C	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.600	p.W200C	1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand,superfamily_SAP domain"	-	no_errors
DDX50	79009	genome.wustl.edu	36	10	70365827	70365827	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70365827	70365827	C	T	SNP	DDX50	NM_024045	human	genbank	54_36p	1	reviewed	silent	c.1581	p.S527	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT"	-	no_errors
DDX21	9188	genome.wustl.edu	36	10	70391886	70391886	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70391886	70391886	C	A	SNP	DDX21	NM_004728	human	genbank	54_36p	1	reviewed	missense	c.574	p.P192T	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT"	-	no_errors
KIAA1279	26128	genome.wustl.edu	36	10	70446172	70446172	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70446172	70446172	G	A	SNP	KIAA1279	NM_015634	human	genbank	54_36p	1	validated	silent	c.1860	p.L620	0.97	NULL	superfamily_SSF48452	-	no_errors
HKDC1	80201	genome.wustl.edu	36	10	70680337	70680337	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	70680337	70680337	T	G	SNP	HKDC1	NM_025130	human	genbank	54_36p	1	validated	missense	c.1759	p.Y587D	1	"superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_1"	"HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES"	-	no_errors
C10orf35	219738	genome.wustl.edu	36	10	71062718	71062718	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71062718	71062718	C	A	SNP	C10orf35	NM_145306	human	genbank	54_36p	1	validated	missense	c.263	p.P88Q	1	NULL	NULL	-	no_errors
COL13A1	1305	genome.wustl.edu	36	10	71348079	71348079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71348079	71348079	G	A	SNP	COL13A1	NM_005203	human	genbank	54_36p	1	reviewed	silent	c.1029	p.K343	1	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
KIAA1274	27143	genome.wustl.edu	36	10	71961158	71961158	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71961158	71961158	T	A	SNP	KIAA1274	NM_014431	human	genbank	54_36p	1	validated	missense	c.575	p.L192H	1	NULL	superfamily_SSF52799	-	no_errors
KIAA1274	27143	genome.wustl.edu	36	10	71968077	71968077	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	71968077	71968077	G	T	SNP	KIAA1274	NM_014431	human	genbank	54_36p	1	validated	missense	c.1359	p.W453C	1	NULL	superfamily_SSF52799	-	no_errors
ADAMTS14	140766	genome.wustl.edu	36	10	72162034	72162034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	72162034	72162034	G	A	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.1130	p.G377D	1	"superfamily_SSF55486,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS14	140766	genome.wustl.edu	36	10	72173420	72173420	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	72173420	72173420	G	A	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.2044	p.V682I	0.97	NULL	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_SSF55486"	-	no_errors
LOC338611	338611	genome.wustl.edu	36	10	72224212	72224212	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	72224212	72224212	C	T	SNP	LOC338611	XM_001130386	human	genbank	54_36p	-1	model	missense	c.74	p.C25Y	1	HMMPfam_Ribosomal_S26e	"HMMPfam_Ribosomal_S26e,PatternScan_RIBOSOMAL_S26E"	-	pseudogene
SFMBT2	57713	genome.wustl.edu	36	10	7245767	7245767	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	7245767	7245767	C	A	SNP	SFMBT2	NM_001029880	human	genbank	54_36p	-1	provisional	missense	c.2656	p.V886L	1	"HMMSmart_SM00454,HMMPfam_SAM_2"	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
SFMBT2	57713	genome.wustl.edu	36	10	7279543	7279543	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	7279543	7279543	C	G	SNP	SFMBT2	NM_001029880	human	genbank	54_36p	-1	provisional	silent	c.1671	p.P557	0.82	NULL	"HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_Tudor/PWWP/MBT"	-	no_errors
C10orf54	64115	genome.wustl.edu	36	10	73190679	73190679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	73190679	73190679	C	G	SNP	C10orf54	NM_022153	human	genbank	54_36p	-1	validated	missense	c.520	p.A174P	0.01	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	-	no_errors
PSAP	5660	genome.wustl.edu	36	10	73251668	73251668	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	73251668	73251668	G	A	SNP	PSAP	NM_001042465	human	genbank	54_36p	-1	reviewed	missense	c.889	p.P297S	1	NULL	"HMMPfam_SapA,HMMSmart_SAPA,superfamily_Saposin_like,HMMPfam_SapB_1,HMMSmart_SapB,HMMPfam_SapB_2"	-	no_errors
ANAPC16	119504	genome.wustl.edu	36	10	73653810	73653810	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	73653810	73653810	G	C	SNP	C10orf104	NM_173473	human	genbank	54_36p	1	validated	missense	c.132	p.E44D	1	NULL	NULL	-	no_errors
OIT3	170392	genome.wustl.edu	36	10	74362137	74362137	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74362137	74362137	G	T	SNP	OIT3	NM_152635	human	genbank	54_36p	1	provisional	missense	c.1487	p.R496L	0.99	"HMMPfam_Zona_pellucida,HMMSmart_SM00241"	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241"	-	no_errors
P4HA1	5033	genome.wustl.edu	36	10	74480988	74480988	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74480988	74480988	A	T	SNP	P4HA1	NM_000917	human	genbank	54_36p	-1	reviewed	silent	c.729	p.G243	1	superfamily_TPR-like	"HMMPfam_P4Ha_N,superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy"	-	no_errors
TTC18	118491	genome.wustl.edu	36	10	74783467	74783467	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74783467	74783467	C	A	SNP	TTC18	NM_145170	human	genbank	54_36p	-1	provisional	missense	c.103	p.A35S	1	NULL	"HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
ZMYND17	118490	genome.wustl.edu	36	10	74855969	74855969	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74855969	74855969	C	T	SNP	ZMYND17	NM_001024593	human	genbank	54_36p	-1	validated	silent	c.675	p.P225	0.01	NULL	"HMMPfam_zf-MYND,PatternScan_ZF_MYND_1"	-	no_errors
USP54	159195	genome.wustl.edu	36	10	74972831	74972831	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74972831	74972831	G	A	SNP	USP54	NM_152586	human	genbank	54_36p	-1	provisional	missense	c.440	p.A147V	1	superfamily_Cysteine proteinases	"superfamily_Cysteine proteinases,HMMPfam_UCH"	-	no_errors
KIAA0913	23053	genome.wustl.edu	36	10	75227656	75227656	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	75227656	75227656	G	T	SNP	KIAA0913	NM_015037	human	genbank	54_36p	1	validated	silent	c.3774	p.G1258	1	NULL	HMMPfam_SWIM	-	no_errors
MYST4	23522	genome.wustl.edu	36	10	76458706	76458706	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	76458706	76458706	A	G	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	missense	c.4118	p.E1373G	1	NULL	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
MYST4	23522	genome.wustl.edu	36	10	76459441	76459441	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	76459441	76459441	G	T	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	missense	c.4853	p.S1618I	0.94	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Winged helix DNA-binding domain"	-	no_errors
DUPD1	338599	genome.wustl.edu	36	10	76488091	76488091	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	76488091	76488091	T	C	SNP	DUPD1	NM_001003892	human	genbank	54_36p	-1	provisional	missense	c.188	p.Y63C	1	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
KCNMA1	3778	genome.wustl.edu	36	10	78614645	78614645	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	78614645	78614645	A	C	SNP	KCNMA1	NM_001014797	human	genbank	54_36p	-1	reviewed	missense	c.638	p.F213C	1	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a,PatternScan_N6_MTASE"	-	no_errors
KIN	22944	genome.wustl.edu	36	10	7862042	7862042	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	7862042	7862042	T	C	SNP	KIN	NM_012311	human	genbank	54_36p	-1	reviewed	missense	c.359	p.K120R	1	HMMPfam_Kin17_mid	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_Kin17_mid"	-	no_errors
DLG5	9231	genome.wustl.edu	36	10	79246325	79246325	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	79246325	79246325	T	G	SNP	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	silent	c.4015	p.R1339	0.96	superfamily_PDZ domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
DLG5	9231	genome.wustl.edu	36	10	79271717	79271731	+	In_Frame_Del	DEL	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	-	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	-	CAGCTCCACTTCGGT	CAGCTCCACTTCGGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	79271717	79271731	CAGCTCCACTTCGGT	-	DEL	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1365_1351	p.TEVEL451in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.936:1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[79271645,79271957])"	no_errors
ZMIZ1	57178	genome.wustl.edu	36	10	80734929	80734929	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	80734929	80734929	C	A	SNP	ZMIZ1	NM_020338	human	genbank	54_36p	1	validated	nonsense	c.2289	p.C763*	1	"superfamily_RING/U-box,HMMPfam_zf-MIZ"	"superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
GATA3	2625	genome.wustl.edu	36	10	8140557	8140557	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	8140557	8140557	G	A	SNP	GATA3	NM_001002295	human	genbank	54_36p	1	validated	silent	c.525	p.S175	0.88	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA"	-	no_errors
TUBB8	347688	genome.wustl.edu	36	10	83295	83295	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	83295	83295	G	C	SNP	TUBB8	NM_177987	human	genbank	54_36p	-1	provisional	missense	c.1037	p.P346R	1	"superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	-	no_errors
LARP4B	23185	genome.wustl.edu	36	10	865530	865530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	865530	865530	C	T	SNP	LARP5	NM_015155	human	genbank	54_36p	-1	provisional	missense	c.920	p.R307Q	1	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87477688	87477688	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	87477688	87477688	G	A	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	silent	c.1437	p.G479	1	"HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87479305	87479305	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	87479305	87479305	T	A	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	missense	c.1280	p.E427V	1	superfamily_Periplasmic binding protein-like I	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
GRID1	2894	genome.wustl.edu	36	10	87956304	87956304	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	87956304	87956304	G	A	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	missense	c.317	p.T106M	1	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
LDB3	11155	genome.wustl.edu	36	10	88441666	88441666	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	88441666	88441666	C	T	SNP	LDB3	NM_007078	human	genbank	54_36p	1	reviewed	silent	c.723	p.S241	1	NULL	"HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMSmart_SM00735,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,HMMPfam_LIM,PatternScan_LIM_DOMAIN_1"	-	no_errors
FAM35A	54537	genome.wustl.edu	36	10	88920679	88920679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	88920679	88920679	C	G	SNP	FAM35A	NM_019054	human	genbank	54_36p	1	validated	missense	c.1931	p.A644G	1	NULL	NULL	-	no_errors
PTEN	5728	genome.wustl.edu	36	10	89701885	89701885	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	89701885	89701885	G	T	SNP	PTEN	NM_000314	human	genbank	54_36p	1	reviewed	missense	c.523	p.V175L	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
RNLS	55328	genome.wustl.edu	36	10	90112411	90112411	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	90112411	90112411	C	G	SNP	C10orf59	NM_001031709	human	genbank	54_36p	-1	provisional	missense	c.578	p.R193P	1	superfamily_FAD/NAD(P)-binding domain	"HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
LIPJ	142910	genome.wustl.edu	36	10	90356418	90356418	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	90356418	90356418	C	A	SNP	LIPJ	NM_001010939	human	genbank	54_36p	1	provisional	missense	c.875	p.S292Y	0.33	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	"HMMPfam_Abhydro_lipase,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	-	no_errors
LOC119358	119358	genome.wustl.edu	36	10	91728509	91728509	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	91728509	91728509	G	A	SNP	LOC119358	XM_061427	human	genbank	54_36p	1	model	missense	c.56	p.R19Q	1	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
SRP9L1	653226	genome.wustl.edu	36	10	93556982	93556982	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	93556982	93556982	G	T	SNP	LOC653226	XM_927451	human	genbank	54_36p	-1	model	missense	c.195	p.F65L	1	"HMMPfam_SRP9,superfamily_Signal recognition particle alu RNA binding heterodimer SRP9/14"	"HMMPfam_SRP9,superfamily_Signal recognition particle alu RNA binding heterodimer SRP9/14"	-	no_errors
TNKS2	80351	genome.wustl.edu	36	10	93592071	93592071	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	93592071	93592071	G	C	SNP	TNKS2	NM_025235	human	genbank	54_36p	1	validated	missense	c.2002	p.D668H	1	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2,superfamily_SSF56399,HMMPfam_PARP"	-	no_errors
HHEX	3087	genome.wustl.edu	36	10	94444440	94444440	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	94444440	94444440	A	G	SNP	HHEX	NM_002729	human	genbank	54_36p	1	reviewed	missense	c.748	p.I250V	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
LOC387703	387703	genome.wustl.edu	36	10	94958431	94958431	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	94958431	94958431	G	T	SNP	LOC387703	XR_016730	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PDE6C	5146	genome.wustl.edu	36	10	95375354	95375359	+	In_Frame_Del	DEL	AGAAGT	AGAAGT	-	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	AGAAGT	AGAAGT	AGAAGT	-	AGAAGT	AGAAGT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	95375354	95375359	AGAAGT	-	DEL	PDE6C	NM_006204	human	genbank	54_36p	1	validated	in_frame_del	c.897_902	p.VE301in_frame_del	1.000:1.000:1.000:1.000:0.936:0.921	"HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781"	"superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	"(deletion:cds_exon[95375322,95375396])"	no_errors
LGI1	9211	genome.wustl.edu	36	10	95543049	95543049	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	95543049	95543049	G	C	SNP	LGI1	NM_005097	human	genbank	54_36p	1	reviewed	missense	c.790	p.E264Q	1	HMMPfam_EPTP	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_EPTP"	-	no_errors
CYP2C18	1562	genome.wustl.edu	36	10	96437584	96437584	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96437584	96437584	G	T	SNP	CYP2C18	NM_000772	human	genbank	54_36p	1	reviewed	missense	c.236	p.G79V	0.87	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C19	1557	genome.wustl.edu	36	10	96525277	96525277	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96525277	96525277	A	C	SNP	CYP2C19	NM_000769	human	genbank	54_36p	1	reviewed	missense	c.472	p.K158Q	0.15	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C19	1557	genome.wustl.edu	36	10	96602522	96602522	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96602522	96602522	T	A	SNP	CYP2C19	NM_000769	human	genbank	54_36p	1	reviewed	missense	c.1334	p.L445Q	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C9	1559	genome.wustl.edu	36	10	96721970	96721970	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96721970	96721970	G	A	SNP	CYP2C9	NM_000771	human	genbank	54_36p	1	reviewed	silent	c.939	p.L313	0.99	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C9	1559	genome.wustl.edu	36	10	96738634	96738634	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	96738634	96738634	G	C	SNP	CYP2C9	NM_000771	human	genbank	54_36p	1	reviewed	missense	c.1332	p.E444D	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
SORBS1	10580	genome.wustl.edu	36	10	97086482	97086482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	97086482	97086482	C	G	SNP	SORBS1	NM_001034954	human	genbank	54_36p	-1	validated	missense	c.3425	p.G1142A	0.86	NULL	"HMMPfam_Sorb,HMMSmart_SM00459,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
ENTPD1	953	genome.wustl.edu	36	10	97589521	97589521	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	97589521	97589521	C	T	SNP	ENTPD1	NM_001098175	human	genbank	54_36p	1	validated	silent	c.249	p.G83	1	HMMPfam_GDA1_CD39	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
ENTPD1	953	genome.wustl.edu	36	10	97614610	97614610	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	97614610	97614610	T	C	SNP	ENTPD1	NM_001098175	human	genbank	54_36p	1	validated	splice_site	c.1347+2	e9+2	1	-	-	-	no_errors
DNTT	1791	genome.wustl.edu	36	10	98072464	98072464	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	10	98072464	98072464	C	A	SNP	DNTT	NM_004088	human	genbank	54_36p	1	reviewed	missense	c.739	p.Q247K	0.89	"HMMSmart_SM00483,superfamily_DNA polymerase beta-like second domain,HMMPfam_DNA_pol_lambd_f"	###############################################################################################################################################################################################################################################################	-	no_errors
LCOR	84458	genome.wustl.edu	36	10	98705139	98705139	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98705139	98705139	G	C	SNP	LCOR	NM_032440	human	genbank	54_36p	1	provisional	missense	c.772	p.V258L	1	NULL	HMMPfam_HTH_psq	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98763798	98763798	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98763798	98763798	T	A	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.3077	p.N1026I	1	"superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00274,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL"	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98792711	98792711	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98792711	98792711	G	C	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.2101	p.P701A	1	"HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT1	6585	genome.wustl.edu	36	10	98814622	98814622	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	98814622	98814622	G	C	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.487	p.Q163E	1	"HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
RRP12	23223	genome.wustl.edu	36	10	99131475	99131475	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99131475	99131475	G	A	SNP	RRP12	NM_015179	human	genbank	54_36p	-1	validated	missense	c.1307	p.T436M	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_NUC173"	-	no_errors
CRTAC1	55118	genome.wustl.edu	36	10	99633985	99633985	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99633985	99633985	C	T	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1600	p.E534K	0.89	NULL	"superfamily_Integrin alpha N-terminal domain,HMMPfam_FG-GAP,HMMPfam_UnbV_ASPIC,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179"	-	no_errors
CRTAC1	55118	genome.wustl.edu	36	10	99634050	99634050	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99634050	99634050	A	C	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1535	p.M512R	0.28	HMMPfam_UnbV_ASPIC	"HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain"	-	no_errors
CRTAC1	55118	genome.wustl.edu	36	10	99645642	99645642	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	99645642	99645642	C	A	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1307	p.R436L	1	superfamily_Integrin alpha N-terminal domain	"HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain"	-	no_errors
SNORD113-5	767565	genome.wustl.edu	36	14	100474284	100474284	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	100474284	100474284	A	G	SNP	SNORD113-5	NR_003233	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0	-	-	-	no_errors
SNORD113-9	767569	genome.wustl.edu	36	14	100481803	100481803	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	100481803	100481803	A	T	SNP	SNORD113-9	NR_003237	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.93	-	-	-	no_errors
SNORD114-11	767589	genome.wustl.edu	36	14	100504268	100504268	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	100504268	100504268	A	T	SNP	SNORD114-11	NR_003204	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.02	-	-	-	no_errors
RAB40AL	282808	genome.wustl.edu	36	X	102079111	102079111	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	102079111	102079111	C	T	SNP	RAB40AL	NM_001031834	human	genbank	54_36p	1	provisional	missense	c.209	p.T70M	1	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,HMMSmart_SOCS,HMMPfam_SOCS_box"	-	no_errors
RAB40AL	282808	genome.wustl.edu	36	X	102079112	102079112	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	102079112	102079112	G	T	SNP	RAB40AL	NM_001031834	human	genbank	54_36p	1	provisional	silent	c.210	p.T70	0.99	"HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540"	"HMMPfam_SOCS_box,HMMSmart_SOCS,HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540"	-	no_errors
IGHG2	3501	genome.wustl.edu	36	14	105180646	105180646	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105180646	105180646	A	G	SNP	IGHG2	ENST00000390545	human	ensembl	54_36p	-1	known	missense	c.919	p.C307R	0	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHG2	3501	genome.wustl.edu	36	14	105181466	105181466	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105181466	105181466	C	G	SNP	IGHG2	ENST00000390544	human	ensembl	54_36p	-1	known	missense	c.310	p.V104L	0.02	superfamily_Immunoglobulin	"PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211894	0	genome.wustl.edu	36	14	105206287	105206287	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105206287	105206287	G	C	SNP	ENSG00000211894	ENST00000390546	human	ensembl	54_36p	-1	known	missense	c.433	p.R145G	0.04	"superfamily_SSF48726,HMMPfam_C1-set"	"superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000214405	0	genome.wustl.edu	36	3	105264954	105264954	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	105264954	105264954	C	G	SNP	ENSG00000214405	ENST00000341355	human	ensembl	54_36p	1	known	missense	c.388	p.Q130E	1	"superfamily_SSF52540,HMMPfam_Ras"	"superfamily_SSF52540,HMMPfam_Ras"	-	no_start_codon
ENSG00000180574	0	genome.wustl.edu	36	12	10550232	10550232	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10550232	10550232	C	G	SNP	ENSG00000180574	ENST00000322446	human	ensembl	54_36p	1	known	missense	c.464	p.A155G	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,HMMPfam_eIF2_C"	-	no_errors
ENSG00000211945	0	genome.wustl.edu	36	14	105712750	105712750	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105712750	105712750	A	T	SNP	ENSG00000211945	ENST00000390605	human	ensembl	54_36p	-1	known	missense	c.209	p.I70N	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211964	0	genome.wustl.edu	36	14	106064967	106064967	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	106064967	106064967	G	T	SNP	ENSG00000211964	ENST00000390624	human	ensembl	54_36p	-1	known	missense	c.243	p.D81E	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
PIRT	644139	genome.wustl.edu	36	17	10669679	10669679	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10669679	10669679	C	T	SNP	PIRT	NM_001101387	human	genbank	54_36p	-1	validated	missense	c.9	p.M3I	1	NULL	NULL	-	no_errors
CBLL1	100128737	genome.wustl.edu	36	7	107176637	107176637	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107176637	107176637	C	T	SNP	LOC100128737	XM_001718329	human	genbank	54_36p	-1	model	missense	c.3	p.M1I	1	NULL	NULL	-	no_errors
LOC440063	440063	genome.wustl.edu	36	11	100042557	100042557	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	100042557	100042557	C	T	SNP	LOC440063	XR_016123	human	genbank	54_36p	1	model	rna	NULL	NULL	0.95	-	-	-	pseudogene
ANGPTL5	253935	genome.wustl.edu	36	11	101278578	101278578	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101278578	101278578	G	A	SNP	ANGPTL5	NM_178127	human	genbank	54_36p	-1	validated	missense	c.524	p.S175F	0.83	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C"	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
YAP1	10413	genome.wustl.edu	36	11	101605876	101605876	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101605876	101605876	T	A	SNP	YAP1	NM_006106	human	genbank	54_36p	1	reviewed	missense	c.1360	p.L454I	1	NULL	"superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1"	-	no_errors
BIRC3	330	genome.wustl.edu	36	11	101700819	101700819	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101700819	101700819	A	G	SNP	BIRC3	NM_001165	human	genbank	54_36p	1	reviewed	silent	c.369	p.S123	0	NULL	"PatternScan_ZF_RING_1,superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
BIRC3	330	genome.wustl.edu	36	11	101701193	101701193	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101701193	101701193	C	G	SNP	BIRC3	NM_001165	human	genbank	54_36p	1	reviewed	missense	c.743	p.S248C	0.92	superfamily_SSF57924	"HMMPfam_CARD,HMMSmart_CARD,HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMSmart_RING,superfamily_DEATH_like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57924"	-	no_errors
MMP7	4316	genome.wustl.edu	36	11	101906626	101906626	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	101906626	101906626	G	T	SNP	MMP7	NM_002423	human	genbank	54_36p	-1	reviewed	missense	c.16	p.L6M	0	NULL	"superfamily_PGBD_like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE"	-	no_errors
MMP8	4317	genome.wustl.edu	36	11	102092270	102092270	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102092270	102092270	C	A	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	missense	c.875	p.R292L	0.98	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
MMP8	4317	genome.wustl.edu	36	11	102092273	102092273	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102092273	102092273	A	G	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	missense	c.872	p.L291P	0.96	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486"	-	no_errors
MMP8	4317	genome.wustl.edu	36	11	102098605	102098605	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102098605	102098605	C	T	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	missense	c.112	p.E38K	0.34	"HMMPfam_PG_binding_1,superfamily_PGBD_like"	"superfamily_Hemopexin,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX,superfamily_SSF55486"	-	no_errors
MMP13	4322	genome.wustl.edu	36	11	102320237	102320237	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102320237	102320237	C	T	SNP	MMP13	NM_002427	human	genbank	54_36p	-1	reviewed	missense	c.1384	p.V462I	0.92	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
DYNC2H1	79659	genome.wustl.edu	36	11	102580816	102580816	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	102580816	102580816	C	T	SNP	DYNC2H1	NM_001080463	human	genbank	54_36p	1	provisional	silent	c.8367	p.F2789	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
CASP5	838	genome.wustl.edu	36	11	104378115	104378115	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	104378115	104378115	C	G	SNP	CASP5	NM_004347	human	genbank	54_36p	-1	reviewed	missense	c.519	p.E173D	0	"superfamily_SSF52129,HMMSmart_CASc"	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,superfamily_SSF52129,HMMSmart_CASc,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
GRIA4	2893	genome.wustl.edu	36	11	105281230	105281230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	105281230	105281230	C	A	SNP	GRIA4	NM_000829	human	genbank	54_36p	1	reviewed	missense	c.1151	p.P384H	0.93	superfamily_SSF53822	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
KBTBD3	143879	genome.wustl.edu	36	11	105434873	105434873	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	105434873	105434873	G	T	SNP	KBTBD3	NM_152433	human	genbank	54_36p	-1	validated	missense	c.162	p.F54L	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
MRVI1	10335	genome.wustl.edu	36	11	10607749	10607749	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	10607749	10607749	C	T	SNP	MRVI1	NM_001098579	human	genbank	54_36p	-1	reviewed	silent	c.459	p.A153	1	NULL	HMMPfam_MRVI1	-	no_errors
LOC642732	642732	genome.wustl.edu	36	11	106201074	106201074	+	RNA	SNP	G	A	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	106201074	106201074	G	A	SNP	LOC642732	XR_016381	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC642732	642732	genome.wustl.edu	36	11	106203375	106203375	+	RNA	SNP	G	C	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	106203375	106203375	G	C	SNP	LOC642732	XR_016381	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CUL5	8065	genome.wustl.edu	36	11	107430593	107430593	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107430593	107430593	G	T	SNP	CUL5	NM_003478	human	genbank	54_36p	1	validated	missense	c.563	p.C188F	1	"superfamily_Cullin repeat,HMMPfam_Cullin"	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_Winged helix DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors
ACAT1	38	genome.wustl.edu	36	11	107511134	107511134	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107511134	107511134	G	T	SNP	ACAT1	NM_000019	human	genbank	54_36p	1	reviewed	missense	c.390	p.M130I	1	"superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1"	"superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3"	-	no_errors
ACAT1	38	genome.wustl.edu	36	11	107511160	107511160	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107511160	107511160	G	A	SNP	ACAT1	NM_000019	human	genbank	54_36p	1	reviewed	missense	c.416	p.S139N	1	"HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,superfamily_Thiolase-like"	"HMMPfam_Thiolase_N,HMMPfam_Thiolase_C,PatternScan_THIOLASE_1,PatternScan_THIOLASE_3,PatternScan_THIOLASE_2,superfamily_Thiolase-like"	-	no_errors
NPAT	4863	genome.wustl.edu	36	11	107537471	107537471	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107537471	107537471	T	C	SNP	NPAT	NM_002519	human	genbank	54_36p	-1	validated	silent	c.3552	p.S1184	0.46	NULL	HMMSmart_SM00667	-	no_errors
ATM	472	genome.wustl.edu	36	11	107658692	107658692	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107658692	107658692	G	C	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	missense	c.3622	p.D1208H	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
ATM	472	genome.wustl.edu	36	11	107707384	107707384	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	107707384	107707384	G	A	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	missense	c.7519	p.D2507N	0.1	superfamily_ARM repeat	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
ARHGAP20	57569	genome.wustl.edu	36	11	109955919	109955919	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	109955919	109955919	G	T	SNP	ARHGAP20	NM_020809	human	genbank	54_36p	-1	validated	missense	c.2961	p.D987E	0.01	NULL	"superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_RA,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP20	57569	genome.wustl.edu	36	11	109958322	109958322	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	109958322	109958322	A	T	SNP	ARHGAP20	NM_020809	human	genbank	54_36p	-1	validated	missense	c.1653	p.F551L	1	superfamily_GTPase activation domain GAP	"HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ALG9	79796	genome.wustl.edu	36	11	111229327	111229327	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111229327	111229327	C	T	SNP	ALG9	NM_024740	human	genbank	54_36p	-1	reviewed	nonsense	c.882	p.W294*	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
HSPB2	3316	genome.wustl.edu	36	11	111289671	111289671	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111289671	111289671	C	A	SNP	HSPB2	NM_001541	human	genbank	54_36p	1	validated	silent	c.391	p.R131	1	"superfamily_HSP20-like chaperones,HMMPfam_HSP20"	"superfamily_HSP20-like chaperones,HMMPfam_HSP20"	-	no_errors
DLAT	1737	genome.wustl.edu	36	11	111404779	111404779	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	111404779	111404779	C	G	SNP	DLAT	NM_001931	human	genbank	54_36p	1	validated	missense	c.560	p.P187R	0.63	superfamily_Single hybrid motif	###############################################################################################################################################################################################################################################################	-	no_errors
PIH1D2	120379	genome.wustl.edu	36	11	111443833	111443833	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111443833	111443833	G	A	SNP	PIH1D2	NM_138789	human	genbank	54_36p	-1	validated	missense	c.920	p.T307M	0.42	HMMPfam_PIH1	HMMPfam_PIH1	-	no_errors
NCAM1	4684	genome.wustl.edu	36	11	112583779	112583779	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	112583779	112583779	T	C	SNP	NCAM1	ENST00000404693	human	ensembl	54_36p	1	known	missense	c.407	p.I136T	0.97	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
ZBTB16	7704	genome.wustl.edu	36	11	113440042	113440042	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	113440042	113440042	C	A	SNP	ZBTB16	NM_001018011	human	genbank	54_36p	1	reviewed	missense	c.810	p.D270E	1	NULL	"HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
NNMT	4837	genome.wustl.edu	36	11	113672574	113672574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	113672574	113672574	C	G	SNP	NNMT	NM_006169	human	genbank	54_36p	1	reviewed	missense	c.86	p.S29C	0.69	"HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_NNMT_PNMT_TEMT"	-	no_errors
RBM7	10179	genome.wustl.edu	36	11	113783439	113783439	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	113783439	113783439	A	T	SNP	RBM7	NM_016090	human	genbank	54_36p	1	provisional	missense	c.501	p.Q167H	0.13	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
FAM55B	120406	genome.wustl.edu	36	11	114074434	114074434	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	114074434	114074434	G	A	SNP	FAM55B	ENST00000375475	human	ensembl	54_36p	1	known	missense	c.590	p.S197N	1	NULL	superfamily_E set domains	-	no_errors
CADM1	23705	genome.wustl.edu	36	11	114554637	114554637	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	114554637	114554637	C	A	SNP	CADM1	NM_014333	human	genbank	54_36p	-1	validated	missense	c.1147	p.V383L	1	NULL	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_ig,HMMSmart_SM00294"	-	no_errors
CADM1	23705	genome.wustl.edu	36	11	114593903	114593903	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	114593903	114593903	A	T	SNP	CADM1	NM_014333	human	genbank	54_36p	-1	validated	missense	c.740	p.I247N	1	superfamily_Immunoglobulin	"HMMSmart_SM00294,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
SIK3	23387	genome.wustl.edu	36	11	116237306	116237306	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	116237306	116237306	T	G	SNP	KIAA0999	NM_025164	human	genbank	54_36p	-1	validated	missense	c.2001	p.L667F	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BACE1	23621	genome.wustl.edu	36	11	116666422	116666422	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	116666422	116666422	G	C	SNP	BACE1	NM_012104	human	genbank	54_36p	-1	reviewed	missense	c.1256	p.A419G	1	superfamily_Acid proteases	"superfamily_Acid proteases,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
CEP164	22897	genome.wustl.edu	36	11	116727895	116727896	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	116727895	116727896	-	C	INS	CEP164	NM_014956	human	genbank	54_36p	1	validated	frame_shift_ins	c.374_375	p.K128fs	0.964:0.403	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW"	-	no_errors
DSCAML1	57453	genome.wustl.edu	36	11	117156448	117156448	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117156448	117156448	T	A	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.514	p.I172F	1	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
FXYD2	100287298	genome.wustl.edu	36	11	117196784	117196784	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	117196784	117196784	C	T	SNP	FXYD2	NM_001680	human	genbank	54_36p	-1	reviewed	missense	c.176	p.R59K	0.24	HMMPfam_ATP1G1_PLM_MAT8	"HMMPfam_ATP1G1_PLM_MAT8,PatternScan_FXYD"	-	no_errors
CD3D	915	genome.wustl.edu	36	11	117716412	117716412	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117716412	117716412	G	A	SNP	CD3D	NM_000732	human	genbank	54_36p	-1	reviewed	silent	c.162	p.D54	0	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_ITAM,HMMSmart_SM00077"	-	no_errors
MLL	4297	genome.wustl.edu	36	11	117869054	117869054	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117869054	117869054	G	C	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	missense	c.5068	p.D1690H	1	HMMSmart_SM00297	###############################################################################################################################################################################################################################################################	-	no_errors
MLL	4297	genome.wustl.edu	36	11	117878814	117878814	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	117878814	117878814	A	G	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	missense	c.6988	p.K2330E	0.81	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ARCN1	372	genome.wustl.edu	36	11	117959773	117959773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	117959773	117959773	G	C	SNP	ARCN1	NM_001655	human	genbank	54_36p	1	reviewed	missense	c.487	p.A163P	1	NULL	"superfamily_SNARE-like,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub"	-	no_errors
PHLDB1	23187	genome.wustl.edu	36	11	118007142	118007143	+	Missense_Mutation	DNP	GC	GC	CT	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	GC	GC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	118007142	118007143	GC	CT	DNP	PHLDB1	NM_015157	human	genbank	54_36p	1	validated	missense	c.1836_1837	p.QR612HC	1.000:1.000	NULL	"superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
BCL9L	283149	genome.wustl.edu	36	11	118277624	118277624	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118277624	118277624	G	A	SNP	BCL9L	NM_182557	human	genbank	54_36p	-1	validated	missense	c.2038	p.R680W	1	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors
VPS11	55823	genome.wustl.edu	36	11	118446271	118446271	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118446271	118446271	C	G	SNP	VPS11	ENST00000300793	human	ensembl	54_36p	1	known	missense	c.587	p.A196G	0.99	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
VPS11	55823	genome.wustl.edu	36	11	118453922	118453922	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118453922	118453922	G	A	SNP	VPS11	ENST00000300793	human	ensembl	54_36p	1	known	missense	c.1694	p.G565E	0.49	NULL	"HMMSmart_SM00184,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
HINFP	25988	genome.wustl.edu	36	11	118506671	118506671	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118506671	118506671	G	C	SNP	HINFP	NM_015517	human	genbank	54_36p	1	validated	missense	c.208	p.E70Q	1	HMMSmart_ZnF_C2H2	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_SSF57667"	-	no_errors
ABCG4	64137	genome.wustl.edu	36	11	118536908	118536908	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118536908	118536908	C	T	SNP	ABCG4	NM_022169	human	genbank	54_36p	1	reviewed	missense	c.1823	p.A608V	0.8	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane"	-	no_errors
MCAM	4162	genome.wustl.edu	36	11	118688545	118688545	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118688545	118688545	C	T	SNP	MCAM	NM_006500	human	genbank	54_36p	-1	validated	missense	c.763	p.E255K	1	superfamily_Immunoglobulin	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
RNF26	79102	genome.wustl.edu	36	11	118712206	118712206	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	118712206	118712206	G	A	SNP	RNF26	NM_032015	human	genbank	54_36p	1	reviewed	silent	c.1164	p.K388	1	"superfamily_RING/U-box,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMPfam_zf-C3HC4"	-	no_errors
PVRL1	5818	genome.wustl.edu	36	11	119050543	119050543	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	119050543	119050543	C	T	SNP	PVRL1	NM_203286	human	genbank	54_36p	-1	validated	missense	c.1028	p.G343D	0.03	NULL	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv,HMMPfam_C2-set_2,HMMSmart_IG,HMMPfam_ig"	-	no_errors
SC5DL	6309	genome.wustl.edu	36	11	120682321	120682321	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120682321	120682321	C	T	SNP	SC5DL	NM_001024956	human	genbank	54_36p	1	reviewed	silent	c.360	p.V120	0	NULL	HMMPfam_FA_hydroxylase	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120896761	120896761	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120896761	120896761	A	G	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	missense	c.1397	p.N466S	1	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602"	###############################################################################################################################################################################################################################################################	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120926506	120926506	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120926506	120926506	A	G	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	missense	c.2183	p.Y728C	1	HMMSmart_SM00602	###############################################################################################################################################################################################################################################################	-	no_errors
SORL1	6653	genome.wustl.edu	36	11	120967008	120967008	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	120967008	120967008	C	T	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	silent	c.4302	p.D1434	1	"HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module"	###############################################################################################################################################################################################################################################################	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1220871	1220871	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	1220871	1220871	C	T	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.6194	p.T2065I	0	NULL	"HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1"	-	no_errors
CRTAM	56253	genome.wustl.edu	36	11	122231688	122231688	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122231688	122231688	G	T	SNP	CRTAM	NM_019604	human	genbank	54_36p	1	validated	missense	c.566	p.G189V	0.01	"superfamily_Immunoglobulin,HMMPfam_C2-set_2"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2"	-	no_errors
C11orf63	79864	genome.wustl.edu	36	11	122279934	122279934	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122279934	122279934	G	C	SNP	C11orf63	NM_024806	human	genbank	54_36p	1	validated	missense	c.436	p.A146P	0.01	NULL	NULL	-	no_errors
C11orf63	79864	genome.wustl.edu	36	11	122335312	122335312	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122335312	122335312	C	T	SNP	C11orf63	NM_024806	human	genbank	54_36p	1	validated	silent	c.2286	p.H762	1	NULL	NULL	-	no_errors
MUC5B	727897	genome.wustl.edu	36	11	1223834	1223834	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	1223834	1223834	A	G	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.9157	p.T3053A	0	NULL	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
ASAM	79827	genome.wustl.edu	36	11	122459124	122459124	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	122459124	122459124	G	A	SNP	ASAM	NM_024769	human	genbank	54_36p	-1	validated	silent	c.558	p.D186	1	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
SCN3B	55800	genome.wustl.edu	36	11	123014126	123014126	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123014126	123014126	C	T	SNP	SCN3B	NM_001040151	human	genbank	54_36p	-1	reviewed	missense	c.562	p.E188K	0.99	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
SCN3B	55800	genome.wustl.edu	36	11	123018415	123018415	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123018415	123018415	G	A	SNP	SCN3B	NM_001040151	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132W	0.97	"HMMSmart_SM00409,HMMPfam_V-set"	"HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
ZNF202	7753	genome.wustl.edu	36	11	123102703	123102703	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123102703	123102703	T	C	SNP	ZNF202	NM_003455	human	genbank	54_36p	-1	validated	missense	c.1159	p.T387A	0.16	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
OR6X1	390260	genome.wustl.edu	36	11	123130200	123130200	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123130200	123130200	C	T	SNP	OR6X1	NM_001005188	human	genbank	54_36p	-1	provisional	silent	c.237	p.L79	0.22	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4D5	219875	genome.wustl.edu	36	11	123316252	123316252	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123316252	123316252	G	C	SNP	OR4D5	NM_001001965	human	genbank	54_36p	1	provisional	missense	c.719	p.C240S	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR10G7	390265	genome.wustl.edu	36	11	123414444	123414444	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123414444	123414444	T	C	SNP	OR10G7	NM_001004463	human	genbank	54_36p	-1	provisional	missense	c.475	p.T159A	0.07	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10G7	390265	genome.wustl.edu	36	11	123414884	123414884	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123414884	123414884	A	T	SNP	OR10G7	NM_001004463	human	genbank	54_36p	-1	provisional	missense	c.35	p.L12H	0.95	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8G5	219865	genome.wustl.edu	36	11	123640505	123640505	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123640505	123640505	G	A	SNP	OR8G5	NM_001005198	human	genbank	54_36p	1	provisional	silent	c.573	p.A191	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR8B3	390271	genome.wustl.edu	36	11	123772093	123772093	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123772093	123772093	C	T	SNP	OR8B3	NM_001005467	human	genbank	54_36p	-1	provisional	missense	c.365	p.R122H	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8B8	26493	genome.wustl.edu	36	11	123815699	123815699	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123815699	123815699	C	G	SNP	OR8B8	NM_012378	human	genbank	54_36p	-1	provisional	missense	c.493	p.G165R	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8A1	390275	genome.wustl.edu	36	11	123945635	123945635	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123945635	123945635	C	T	SNP	OR8A1	NM_001005194	human	genbank	54_36p	1	provisional	missense	c.461	p.S154F	0.08	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
VSIG2	23584	genome.wustl.edu	36	11	124123564	124123564	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124123564	124123564	G	A	SNP	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	silent	c.783	p.F261	0.98	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
VSIG2	23584	genome.wustl.edu	36	11	124125917	124125920	+	Frame_Shift_Del	DEL	GTCA	GTCA	-	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	GTCA	GTCA	GTCA	-	GTCA	GTCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124125917	124125920	GTCA	-	DEL	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	frame_shift_del	c.330_327	p.D110fs	0.066:0.117:0.122:0.118	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	"(deletion:cds_exon[124125820,124126027])"	no_errors
ROBO3	64221	genome.wustl.edu	36	11	124255593	124255593	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124255593	124255593	C	T	SNP	ROBO3	NM_022370	human	genbank	54_36p	1	validated	missense	c.4028	p.T1343M	0.96	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ROBO4	54538	genome.wustl.edu	36	11	124268986	124268986	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124268986	124268986	G	T	SNP	ROBO4	NM_019055	human	genbank	54_36p	-1	validated	missense	c.1484	p.A495D	0.02	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
CCDC15	80071	genome.wustl.edu	36	11	124362919	124362919	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124362919	124362919	C	G	SNP	CCDC15	NM_025004	human	genbank	54_36p	1	validated	silent	c.1587	p.G529	0.05	NULL	NULL	-	no_errors
PKNOX2	63876	genome.wustl.edu	36	11	124743010	124743010	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	124743010	124743010	C	T	SNP	PKNOX2	NM_022062	human	genbank	54_36p	1	validated	missense	c.146	p.S49L	1	NULL	"PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
DDX25	29118	genome.wustl.edu	36	11	125292231	125292231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	125292231	125292231	G	C	SNP	DDX25	NM_013264	human	genbank	54_36p	1	reviewed	missense	c.571	p.E191Q	1	HMMSmart_SM00487	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
CDON	50937	genome.wustl.edu	36	11	125379068	125379068	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	125379068	125379068	C	A	SNP	CDON	NM_016952	human	genbank	54_36p	-1	validated	missense	c.1965	p.M655I	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
FLI1	2313	genome.wustl.edu	36	11	128185583	128185583	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	128185583	128185583	G	A	SNP	FLI1	NM_002017	human	genbank	54_36p	1	validated	silent	c.849	p.L283	1	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1"	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
NFRKB	4798	genome.wustl.edu	36	11	129244766	129244766	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129244766	129244766	C	G	SNP	NFRKB	NM_006165	human	genbank	54_36p	-1	validated	missense	c.3439	p.G1147R	0.79	NULL	NULL	-	no_errors
APLP2	334	genome.wustl.edu	36	11	129484610	129484610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129484610	129484610	T	C	SNP	APLP2	NM_001642	human	genbank	54_36p	1	validated	missense	c.182	p.M61T	1	"HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain"	###############################################################################################################################################################################################################################################################	-	no_errors
APLP2	334	genome.wustl.edu	36	11	129515549	129515549	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129515549	129515549	G	T	SNP	APLP2	NM_001642	human	genbank	54_36p	1	validated	missense	c.1920	p.E640D	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ST14	6768	genome.wustl.edu	36	11	129575215	129575215	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	129575215	129575215	A	C	SNP	ST14	NM_021978	human	genbank	54_36p	1	reviewed	missense	c.1967	p.H656P	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS"	###############################################################################################################################################################################################################################################################	-	no_errors
SNX19	399979	genome.wustl.edu	36	11	130290258	130290258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	130290258	130290258	C	A	SNP	SNX19	NM_014758	human	genbank	54_36p	-1	validated	missense	c.787	p.V263L	0	"HMMPfam_PXA,HMMSmart_SM00313"	"HMMPfam_PXA,HMMSmart_SM00313,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_Nexin_C"	-	no_errors
SNX19	399979	genome.wustl.edu	36	11	130290809	130290809	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	130290809	130290809	A	G	SNP	SNX19	NM_014758	human	genbank	54_36p	-1	validated	missense	c.236	p.L79P	1	NULL	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PXA,HMMPfam_Nexin_C,HMMSmart_SM00313"	-	no_errors
NTM	50863	genome.wustl.edu	36	11	131521404	131521404	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	131521404	131521404	G	A	SNP	NTM	NM_001048209	human	genbank	54_36p	1	reviewed	silent	c.186	p.R62	1	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
NTM	50863	genome.wustl.edu	36	11	131689818	131689818	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	131689818	131689818	G	T	SNP	HNT	ENST00000374784	human	ensembl	54_36p	1	known	silent	c.945	p.V315	0.96	NULL	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
JAM3	83700	genome.wustl.edu	36	11	133444255	133444255	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	133444255	133444255	C	A	SNP	JAM3	NM_032801	human	genbank	54_36p	1	reviewed	missense	c.202	p.L68I	0.78	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
NCAPD3	23310	genome.wustl.edu	36	11	133533032	133533032	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	133533032	133533032	C	A	SNP	NCAPD3	NM_015261	human	genbank	54_36p	-1	validated	splice_site	c.4174+1	e31+1	0.07	-	-	-	no_errors
PTH	5741	genome.wustl.edu	36	11	13470546	13470546	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	13470546	13470546	A	G	SNP	PTH	NM_000315	human	genbank	54_36p	-1	reviewed	silent	c.330	p.T110	0.06	HMMPfam_Parathyroid	"HMMPfam_Parathyroid,HMMSmart_PTH,PatternScan_PARATHYROID"	-	no_errors
FAR1	84188	genome.wustl.edu	36	11	13705692	13705692	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	13705692	13705692	A	T	SNP	FAR1	NM_032228	human	genbank	54_36p	1	validated	missense	c.1271	p.D424V	1	HMMPfam_Sterile	"superfamily_NAD(P)-bd,HMMPfam_NAD_binding_4,HMMPfam_Sterile"	-	no_errors
CYP2R1	120227	genome.wustl.edu	36	11	14858846	14858846	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	14858846	14858846	G	A	SNP	CYP2R1	NM_024514	human	genbank	54_36p	-1	reviewed	nonsense	c.412	p.R138*	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
KRTAP5-3	387266	genome.wustl.edu	36	11	1585657	1585657	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	1585657	1585657	C	A	SNP	KRTAP5-3	NM_001012708	human	genbank	54_36p	-1	validated	missense	c.535	p.G179C	0.18	PatternScan_VWFC_1	"PatternScan_4FE4S_FER_1,PatternScan_VWFC_1"	-	no_errors
SOX6	55553	genome.wustl.edu	36	11	15967251	15967251	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	15967251	15967251	G	A	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	missense	c.1774	p.R592C	1	superfamily_HMG-box	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
SOX6	55553	genome.wustl.edu	36	11	16296734	16296734	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	16296734	16296734	T	G	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	silent	c.279	p.R93	1	NULL	"HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box"	-	no_errors
PIK3C2A	5286	genome.wustl.edu	36	11	17128748	17128748	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17128748	17128748	G	C	SNP	PIK3C2A	NM_002645	human	genbank	54_36p	-1	validated	missense	c.1200	p.H400Q	0.01	superfamily_Ubiquitin-like	###############################################################################################################################################################################################################################################################	-	no_errors
KCNJ11	3767	genome.wustl.edu	36	11	17365114	17365121	+	Frame_Shift_Del	DEL	GGGCCCGC	GGGCCCGC	-	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	GGGCCCGC	GGGCCCGC	GGGCCCGC	-	GGGCCCGC	GGGCCCGC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17365114	17365121	GGGCCCGC	-	DEL	KCNJ11	NM_000525	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1101_1094	p.R365fs	0.057:0.060:0.050:0.001:0.001:0.001:0.000:0.001	HMMPfam_IRK	"HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set"	"(deletion:cds_exon[17365042,17366214])"	no_errors
USH1C	10083	genome.wustl.edu	36	11	17505139	17505139	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17505139	17505139	C	A	SNP	USH1C	NM_153676	human	genbank	54_36p	-1	reviewed	missense	c.521	p.S174I	1	superfamily_PDZ	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
MYOD1	4654	genome.wustl.edu	36	11	17698019	17698019	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	17698019	17698019	G	T	SNP	MYOD1	NM_002478	human	genbank	54_36p	1	reviewed	silent	c.114	p.P38	0.97	"HMMPfam_Basic,HMMSmart_BASIC"	"HMMPfam_Basic,HMMSmart_BASIC,superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18687509	18687509	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18687509	18687509	C	T	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	splice_site	c.2695+1	e16+1	1	-	-	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18693664	18693664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18693664	18693664	C	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	missense	c.1422	p.E474D	0.99	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
IGSF22	283284	genome.wustl.edu	36	11	18699666	18699666	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18699666	18699666	C	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	missense	c.370	p.V124L	0.99	"HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726"	-	no_errors
PTPN5	84867	genome.wustl.edu	36	11	18707988	18707988	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18707988	18707988	A	T	SNP	PTPN5	ENST00000396166	human	ensembl	54_36p	-1	known	missense	c.101	p.L34Q	0	HMMSmart_PTPc	"HMMSmart_PTPc,HMMPfam_Y_phosphatase,superfamily_SSF52799,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPN5	84867	genome.wustl.edu	36	11	18716018	18716018	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	18716018	18716018	T	C	SNP	PTPN5	NM_006906	human	genbank	54_36p	-1	validated	missense	c.985	p.K329E	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
NAV2	89797	genome.wustl.edu	36	11	20075774	20075774	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	20075774	20075774	G	C	SNP	NAV2	NM_182964	human	genbank	54_36p	1	validated	missense	c.6265	p.E2089Q	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
DBX1	120237	genome.wustl.edu	36	11	20138083	20138083	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	20138083	20138083	T	C	SNP	DBX1	NM_001029865	human	genbank	54_36p	-1	inferred	missense	c.364	p.T122A	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
LOC645490	645490	genome.wustl.edu	36	11	20552850	20552851	+	Missense_Mutation	DNP	GG	TC	TC	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	GG	GG	TC	TC	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	20552850	20552851	GG	TC	DNP	LOC645490	XM_928515	human	genbank	54_36p	1	model	missense	c.325_326	p.G109S	1.000:1.000	"superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	"HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_HMG_box"	-	no_errors
SLC17A6	57084	genome.wustl.edu	36	11	22337568	22337569	+	Silent	DNP	CC	CC	AT	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	CC	CC	CC	AT	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	22337568	22337569	CC	AT	DNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	silent	c.492_493	p.STLN163	1.000:1.000	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SLC17A6	57084	genome.wustl.edu	36	11	22354124	22354124	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	22354124	22354124	C	A	SNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	missense	c.1195	p.L399M	0.93	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
SLC17A6	57084	genome.wustl.edu	36	11	22354787	22354787	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	22354787	22354787	A	G	SNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	missense	c.1406	p.K469R	1	superfamily_MFS_gen_substrate_transporter	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
TRPM5	29850	genome.wustl.edu	36	11	2389468	2389468	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	2389468	2389468	G	C	SNP	TRPM5	NM_014555	human	genbank	54_36p	-1	validated	silent	c.2580	p.G860	0.99	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
KCNQ1	3784	genome.wustl.edu	36	11	2561263	2561263	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	2561263	2561263	A	T	SNP	KCNQ1	NM_000218	human	genbank	54_36p	1	reviewed	missense	c.944	p.Y315F	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
SLC5A12	159963	genome.wustl.edu	36	11	26651643	26651643	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	26651643	26651643	C	T	SNP	SLC5A12	NM_178498	human	genbank	54_36p	-1	validated	missense	c.1589	p.R530K	0	NULL	HMMPfam_SSF	-	no_errors
KIF18A	81930	genome.wustl.edu	36	11	28014590	28014590	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	28014590	28014590	T	A	SNP	KIF18A	NM_031217	human	genbank	54_36p	-1	validated	missense	c.2146	p.N716Y	0	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
NAP1L4	4676	genome.wustl.edu	36	11	2937577	2937577	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	2937577	2937577	C	T	SNP	NAP1L4	NM_005969	human	genbank	54_36p	-1	reviewed	missense	c.745	p.G249R	1	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
CARS	833	genome.wustl.edu	36	11	2995080	2995080	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	2995080	2995080	T	A	SNP	CARS	NM_001014437	human	genbank	54_36p	-1	reviewed	silent	c.1749	p.A583	0.86	NULL	"superfamily_SSF52374,HMMPfam_tRNA-synt_1e"	-	no_errors
KCNA4	3739	genome.wustl.edu	36	11	29989393	29989393	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	29989393	29989393	G	T	SNP	KCNA4	NM_002233	human	genbank	54_36p	-1	reviewed	missense	c.1409	p.T470N	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"HMMPfam_K_channel_TID,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
CARS	833	genome.wustl.edu	36	11	3004584	3004584	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	3004584	3004584	C	G	SNP	CARS	NM_001014437	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.V351L	1	"HMMPfam_tRNA-synt_1e,superfamily_SSF52374"	"HMMPfam_tRNA-synt_1e,superfamily_SSF52374"	-	no_errors
FSHB	2488	genome.wustl.edu	36	11	30211747	30211747	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	30211747	30211747	A	G	SNP	FSHB	NM_000510	human	genbank	54_36p	1	reviewed	missense	c.214	p.K72E	1	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501"	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2"	-	no_errors
FSHB	2488	genome.wustl.edu	36	11	30211794	30211794	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	30211794	30211794	T	C	SNP	FSHB	NM_000510	human	genbank	54_36p	1	reviewed	silent	c.261	p.H87	0.19	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501"	"HMMSmart_GHB,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_SSF57501"	-	no_errors
CCDC73	493860	genome.wustl.edu	36	11	32592805	32592805	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	32592805	32592805	T	G	SNP	CCDC73	NM_001008391	human	genbank	54_36p	-1	validated	silent	c.1635	p.I545	0.58	NULL	NULL	-	no_errors
QSER1	79832	genome.wustl.edu	36	11	32954531	32954531	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	32954531	32954531	T	C	SNP	QSER1	NM_001076786	human	genbank	54_36p	1	provisional	missense	c.5143	p.W1715R	1	NULL	NULL	-	no_errors
HIPK3	10114	genome.wustl.edu	36	11	33315267	33315268	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	GA	GA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	33315267	33315268	GA	TT	DNP	HIPK3	NM_005734	human	genbank	54_36p	1	validated	missense	c.1292_1293	p.R431I	1.000:1.000	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CAPRIN1	4076	genome.wustl.edu	36	11	34054722	34054722	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	34054722	34054722	G	T	SNP	CAPRIN1	NM_005898	human	genbank	54_36p	1	validated	missense	c.645	p.W215C	1	NULL	NULL	-	no_errors
CAT	847	genome.wustl.edu	36	11	34427407	34427407	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	34427407	34427407	G	A	SNP	CAT	NM_001752	human	genbank	54_36p	1	validated	silent	c.159	p.Q53	1	"superfamily_Catalase_N,HMMPfam_Catalase"	"superfamily_Catalase_N,HMMPfam_Catalase,PatternScan_CATALASE_2,PatternScan_CATALASE_1,HMMPfam_Catalase-rel"	-	no_errors
SLC1A2	6506	genome.wustl.edu	36	11	35265049	35265055	+	Frame_Shift_Del	DEL	GAAAGGT	GAAAGGT	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GAAAGGT	GAAAGGT	GAAAGGT	-	GAAAGGT	GAAAGGT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35265049	35265055	GAAAGGT	-	DEL	SLC1A2	NM_004171	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1117_1111	p.T371fs	1.000:1.000:1.000:1.000:0.998:1.000:1.000	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	"(deletion:cds_exon[35264880,35265074])"	no_errors
SLC1A2	6506	genome.wustl.edu	36	11	35290516	35290516	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35290516	35290516	C	A	SNP	SLC1A2	NM_004171	human	genbank	54_36p	-1	reviewed	silent	c.366	p.V122	1	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
PAMR1	25891	genome.wustl.edu	36	11	35410599	35410599	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35410599	35410599	G	A	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	missense	c.2095	p.R699C	0.08	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"HMMSmart_EGF,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	-	no_errors
PAMR1	25891	genome.wustl.edu	36	11	35452801	35452801	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	35452801	35452801	G	C	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	missense	c.447	p.H149Q	1	"HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB"	"HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,HMMPfam_EGF,HMMSmart_EGF,superfamily_Pept_Ser_Cys,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,superfamily_SSF57196"	-	no_errors
PRR5L	79899	genome.wustl.edu	36	11	36397401	36397401	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	36397401	36397401	T	A	SNP	FLJ14213	NM_024841	human	genbank	54_36p	1	provisional	missense	c.266	p.L89H	1	HMMPfam_HbrB	HMMPfam_HbrB	-	no_errors
LRRC4C	57689	genome.wustl.edu	36	11	40092681	40092681	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	40092681	40092681	G	C	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	missense	c.1738	p.P580A	1	NULL	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	-	no_errors
LRRC4C	57689	genome.wustl.edu	36	11	40092829	40092829	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	40092829	40092829	A	T	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	silent	c.1590	p.I530	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
LRRC4C	57689	genome.wustl.edu	36	11	40094160	40094160	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	40094160	40094160	G	C	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	missense	c.259	p.Q87E	1	"HMMSmart_SM00369,superfamily_L domain-like"	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
TTC17	55761	genome.wustl.edu	36	11	43422283	43422283	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	43422283	43422283	C	G	SNP	TTC17	NM_018259	human	genbank	54_36p	1	provisional	nonsense	c.2613	p.Y871*	0.95	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
TRIM21	6737	genome.wustl.edu	36	11	4363210	4363210	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4363210	4363210	C	T	SNP	TRIM21	NM_003141	human	genbank	54_36p	-1	reviewed	missense	c.1309	p.A437T	0.45	"HMMPfam_SPRY,HMMSmart_SPRY"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
TRIM21	6737	genome.wustl.edu	36	11	4366267	4366267	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4366267	4366267	C	G	SNP	TRIM21	NM_003141	human	genbank	54_36p	-1	reviewed	missense	c.574	p.E192Q	0.98	NULL	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMSmart_SPRY,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
TP53I11	9537	genome.wustl.edu	36	11	44913053	44913053	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	44913053	44913053	A	C	SNP	TP53I11	NM_001076787	human	genbank	54_36p	-1	validated	missense	c.528	p.I176M	1	NULL	NULL	-	no_errors
SYT13	57586	genome.wustl.edu	36	11	45230638	45230638	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	45230638	45230638	G	C	SNP	SYT13	NM_020826	human	genbank	54_36p	-1	validated	missense	c.756	p.H252Q	0.99	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00239"	-	no_errors
C11orf40	143501	genome.wustl.edu	36	11	4551264	4551264	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4551264	4551264	A	G	SNP	C11orf40	NM_144663	human	genbank	54_36p	-1	predicted	silent	c.156	p.N52	0	NULL	NULL	-	no_errors
PEX16	9409	genome.wustl.edu	36	11	45892454	45892454	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	45892454	45892454	G	A	SNP	PEX16	NM_057174	human	genbank	54_36p	-1	reviewed	missense	c.683	p.P228L	1	HMMPfam_Pex16	HMMPfam_Pex16	-	no_errors
GYLTL1B	120071	genome.wustl.edu	36	11	45904852	45904852	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	45904852	45904852	G	A	SNP	GYLTL1B	NM_152312	human	genbank	54_36p	1	validated	silent	c.1179	p.L393	1	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	-	no_errors
CREB3L1	90993	genome.wustl.edu	36	11	46289268	46289268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46289268	46289268	G	A	SNP	CREB3L1	ENST00000288400	human	ensembl	54_36p	1	known	silent	c.705	p.A235	0.67	NULL	"superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
CREB3L1	90993	genome.wustl.edu	36	11	46294513	46294513	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46294513	46294513	G	T	SNP	CREB3L1	ENST00000288400	human	ensembl	54_36p	1	known	splice_site	c.1131+1	e9+1	1	-	-	-	no_errors
OR51E2	81285	genome.wustl.edu	36	11	4659616	4659616	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4659616	4659616	C	A	SNP	OR51E2	NM_030774	human	genbank	54_36p	-1	validated	missense	c.902	p.R301L	0.14	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
F2	2147	genome.wustl.edu	36	11	46704017	46704017	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46704017	46704017	C	T	SNP	F2	NM_000506	human	genbank	54_36p	1	reviewed	missense	c.592	p.R198C	0.02	superfamily_Kringle-like	###############################################################################################################################################################################################################################################################	-	no_errors
CKAP5	9793	genome.wustl.edu	36	11	46775067	46775067	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	46775067	46775067	C	T	SNP	CKAP5	NM_001008938	human	genbank	54_36p	-1	validated	splice_site	c.1339-1	e11-1	1	-	-	-	no_errors
ACP2	53	genome.wustl.edu	36	11	47223461	47223461	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47223461	47223461	A	G	SNP	ACP2	NM_001610	human	genbank	54_36p	-1	reviewed	missense	c.610	p.W204R	1	"HMMPfam_Acid_phosphat_A,superfamily_SSF53254"	"HMMPfam_Acid_phosphat_A,superfamily_SSF53254,PatternScan_HIS_ACID_PHOSPHAT_1,PatternScan_HIS_ACID_PHOSPHAT_2"	-	no_errors
NR1H3	10062	genome.wustl.edu	36	11	47246815	47246815	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47246815	47246815	C	T	SNP	NR1H3	NM_005693	human	genbank	54_36p	1	validated	missense	c.1336	p.H446Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MADD	8567	genome.wustl.edu	36	11	47267100	47267100	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47267100	47267100	G	A	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	missense	c.2659	p.G887R	1	NULL	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN"	-	no_errors
MADD	8567	genome.wustl.edu	36	11	47289962	47289962	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47289962	47289962	C	T	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	missense	c.4262	p.A1421V	0.92	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800"	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47398461	47398461	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47398461	47398461	C	A	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	nonsense	c.1057	p.E353*	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47401073	47401073	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47401073	47401073	T	G	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	missense	c.619	p.N207H	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PSMC3	5702	genome.wustl.edu	36	11	47402214	47402214	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47402214	47402214	G	A	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	nonsense	c.550	p.Q184*	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CELF1	10658	genome.wustl.edu	36	11	47464899	47464899	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47464899	47464899	C	G	SNP	CUGBP1	NM_001025596	human	genbank	54_36p	-1	reviewed	missense	c.289	p.A97P	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
KBTBD4	55709	genome.wustl.edu	36	11	47553810	47553810	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47553810	47553810	G	T	SNP	KBTBD4	NM_016506	human	genbank	54_36p	-1	validated	missense	c.607	p.Q203K	1	HMMPfam_BACK	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_Kelch_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1"	-	no_errors
AGBL2	79841	genome.wustl.edu	36	11	47638436	47638436	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47638436	47638436	C	G	SNP	AGBL2	NM_024783	human	genbank	54_36p	-1	validated	missense	c.2574	p.K858N	0.08	NULL	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	-	no_errors
NUP160	23279	genome.wustl.edu	36	11	47786597	47786597	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47786597	47786597	G	A	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.2302	p.P768S	0.98	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
NUP160	23279	genome.wustl.edu	36	11	47826422	47826422	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	47826422	47826422	G	A	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.127	p.R43W	0.57	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
OR4S1	256148	genome.wustl.edu	36	11	48285216	48285216	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48285216	48285216	A	T	SNP	OR4S1	NM_001004725	human	genbank	54_36p	1	provisional	missense	c.866	p.N289I	0.33	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51T1	401665	genome.wustl.edu	36	11	4860452	4860452	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4860452	4860452	A	C	SNP	OR51T1	NM_001004759	human	genbank	54_36p	1	provisional	silent	c.828	p.A276	0.24	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51A7	119687	genome.wustl.edu	36	11	4885418	4885418	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4885418	4885418	G	A	SNP	OR51A7	NM_001004749	human	genbank	54_36p	1	provisional	missense	c.243	p.M81I	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LOC120824	120824	genome.wustl.edu	36	11	48953697	48953697	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48953697	48953697	G	A	SNP	LOC120824	XM_062300	human	genbank	54_36p	-1	model	silent	c.1288	p.L430	0.71	HMMPfam_SPRY	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY"	-	no_errors
LOC340970	340970	genome.wustl.edu	36	11	48963952	48963952	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48963952	48963952	A	G	SNP	LOC340970	XR_042351	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC340970	340970	genome.wustl.edu	36	11	48965650	48965650	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48965650	48965650	G	T	SNP	LOC340970	XR_042351	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC283116	283116	genome.wustl.edu	36	11	49009893	49009893	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49009893	49009893	A	C	SNP	LOC283116	XM_208043	human	genbank	54_36p	1	model	missense	c.166	p.T56P	0.65	superfamily_SSF57850	"PatternScan_ZF_RING_1,superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY"	-	no_errors
OR51G1	79324	genome.wustl.edu	36	11	4901325	4901325	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4901325	4901325	A	G	SNP	OR51G1	NM_001005237	human	genbank	54_36p	-1	provisional	missense	c.821	p.V274A	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LOC283116	283116	genome.wustl.edu	36	11	49016060	49016060	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49016060	49016060	T	C	SNP	LOC283116	XM_208043	human	genbank	54_36p	1	model	silent	c.1314	p.S438	0.09	HMMPfam_SPRY	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
OR51A4	401666	genome.wustl.edu	36	11	4924258	4924258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4924258	4924258	C	A	SNP	OR51A4	NM_001005329	human	genbank	54_36p	-1	provisional	missense	c.649	p.V217L	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51A4	401666	genome.wustl.edu	36	11	4924365	4924365	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4924365	4924365	C	T	SNP	OR51A4	NM_001005329	human	genbank	54_36p	-1	provisional	missense	c.542	p.C181Y	0.99	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LOC729960	729960	genome.wustl.edu	36	11	49348473	49348473	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49348473	49348473	T	A	SNP	LOC729960	XR_016034	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC387770	387770	genome.wustl.edu	36	11	49850158	49850158	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49850158	49850158	A	T	SNP	LOC387770	XR_017307	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
OR4C12	283093	genome.wustl.edu	36	11	49960414	49960414	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49960414	49960414	A	G	SNP	OR4C12	NM_001005270	human	genbank	54_36p	-1	provisional	missense	c.200	p.I67T	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR52A1	23538	genome.wustl.edu	36	11	5129570	5129570	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5129570	5129570	A	G	SNP	OR52A1	NM_012375	human	genbank	54_36p	-1	validated	silent	c.606	p.G202	0.03	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4C46	119749	genome.wustl.edu	36	11	51372438	51372438	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	51372438	51372438	A	T	SNP	OR4C46	NM_001004703	human	genbank	54_36p	1	provisional	missense	c.581	p.E194V	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR51B2	79345	genome.wustl.edu	36	11	5301582	5301582	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5301582	5301582	A	C	SNP	OR51B2	NM_033180	human	genbank	54_36p	-1	validated	silent	c.522	p.R174	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR51I2	390064	genome.wustl.edu	36	11	5432027	5432027	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5432027	5432027	A	G	SNP	OR51I2	NM_001004754	human	genbank	54_36p	1	provisional	missense	c.733	p.I245V	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
UBQLN3	50613	genome.wustl.edu	36	11	5486713	5486713	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5486713	5486713	G	A	SNP	UBQLN3	NM_017481	human	genbank	54_36p	-1	reviewed	missense	c.652	p.R218W	1	HMMSmart_STI1	"PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin,HMMSmart_STI1,superfamily_UBA_like,HMMSmart_UBA,HMMPfam_UBA"	-	no_errors
OR4C16	219428	genome.wustl.edu	36	11	55096435	55096435	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55096435	55096435	A	T	SNP	OR4C16	NM_001004701	human	genbank	54_36p	1	validated	nonsense	c.256	p.K86*	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR52H1	390067	genome.wustl.edu	36	11	5523114	5523114	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5523114	5523114	G	C	SNP	OR52H1	NM_001005289	human	genbank	54_36p	-1	provisional	silent	c.216	p.S72	0.96	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR5D14	219436	genome.wustl.edu	36	11	55319848	55319848	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55319848	55319848	C	A	SNP	OR5D14	NM_001004735	human	genbank	54_36p	1	provisional	missense	c.241	p.P81T	0.64	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5D18	219438	genome.wustl.edu	36	11	55343867	55343867	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55343867	55343867	T	G	SNP	OR5D18	NM_001001952	human	genbank	54_36p	1	provisional	missense	c.186	p.F62L	0.96	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5D16	390144	genome.wustl.edu	36	11	55362906	55362906	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55362906	55362906	G	C	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.103	p.A35P	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5D16	390144	genome.wustl.edu	36	11	55363647	55363647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55363647	55363647	G	A	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.844	p.V282M	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
SPRYD5	84767	genome.wustl.edu	36	11	55409881	55409881	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55409881	55409881	A	T	SNP	SPRYD5	ENST00000327733	human	ensembl	54_36p	1	known	missense	c.422	p.E141V	0.95	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY"	-	no_start_codon
OR5I1	10798	genome.wustl.edu	36	11	55459861	55459861	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55459861	55459861	C	T	SNP	OR5I1	NM_006637	human	genbank	54_36p	-1	reviewed	missense	c.592	p.E198K	0.8	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5I1	10798	genome.wustl.edu	36	11	55460276	55460276	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	55460276	55460276	G	A	SNP	OR5I1	NM_006637	human	genbank	54_36p	-1	reviewed	silent	c.177	p.T59	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR10AG1	282770	genome.wustl.edu	36	11	55491934	55491934	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	55491934	55491934	C	T	SNP	OR10AG1	NM_001005491	human	genbank	54_36p	-1	provisional	silent	c.582	p.A194	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5AS1	219447	genome.wustl.edu	36	11	55555264	55555264	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55555264	55555264	G	C	SNP	OR5AS1	NM_001001921	human	genbank	54_36p	1	provisional	missense	c.794	p.S265T	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5AS1	219447	genome.wustl.edu	36	11	55555307	55555307	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55555307	55555307	T	G	SNP	OR5AS1	NM_001001921	human	genbank	54_36p	1	provisional	silent	c.837	p.T279	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8H2	390151	genome.wustl.edu	36	11	55629539	55629539	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55629539	55629539	T	G	SNP	OR8H2	NM_001005200	human	genbank	54_36p	1	provisional	missense	c.445	p.Y149D	0.4	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR8H3	390152	genome.wustl.edu	36	11	55646944	55646944	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55646944	55646944	A	T	SNP	OR8H3	NM_001005201	human	genbank	54_36p	1	provisional	missense	c.520	p.I174F	0.52	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5T2	219464	genome.wustl.edu	36	11	55756971	55756971	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55756971	55756971	A	G	SNP	OR5T2	NM_001004746	human	genbank	54_36p	-1	provisional	silent	c.267	p.I89	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5T1	390155	genome.wustl.edu	36	11	55800327	55800327	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55800327	55800327	T	C	SNP	OR5T1	NM_001004745	human	genbank	54_36p	1	provisional	missense	c.637	p.Y213H	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8K3	219473	genome.wustl.edu	36	11	55842832	55842832	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55842832	55842832	A	T	SNP	OR8K3	NM_001005202	human	genbank	54_36p	1	provisional	silent	c.474	p.L158	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR8J1	219477	genome.wustl.edu	36	11	55884585	55884585	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55884585	55884585	A	C	SNP	OR8J1	NM_001005205	human	genbank	54_36p	1	provisional	missense	c.287	p.E96A	0.95	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8U1	219417	genome.wustl.edu	36	11	55899806	55899806	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55899806	55899806	G	A	SNP	OR8U1	NM_001005204	human	genbank	54_36p	1	provisional	missense	c.131	p.G44D	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8U1	219417	genome.wustl.edu	36	11	55899999	55899999	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55899999	55899999	G	T	SNP	OR8U1	NM_001005204	human	genbank	54_36p	1	provisional	missense	c.324	p.M108I	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8U1	219417	genome.wustl.edu	36	11	55900385	55900385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55900385	55900385	C	A	SNP	OR8U1	NM_001005204	human	genbank	54_36p	1	provisional	missense	c.710	p.A237D	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5R1	219479	genome.wustl.edu	36	11	55941420	55941420	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55941420	55941420	T	A	SNP	OR5R1	NM_001004744	human	genbank	54_36p	-1	provisional	missense	c.865	p.I289F	0.91	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5M3	219482	genome.wustl.edu	36	11	55994078	55994078	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55994078	55994078	T	C	SNP	OR5M3	NM_001004742	human	genbank	54_36p	-1	provisional	missense	c.472	p.T158A	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M1	390168	genome.wustl.edu	36	11	56136973	56136973	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56136973	56136973	G	C	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	silent	c.582	p.V194	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M1	390168	genome.wustl.edu	36	11	56137236	56137236	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56137236	56137236	G	A	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	silent	c.319	p.L107	0.29	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5AK2	390181	genome.wustl.edu	36	11	56513550	56513550	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56513550	56513550	A	G	SNP	OR5AK2	NM_001005323	human	genbank	54_36p	1	provisional	missense	c.586	p.I196V	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5AK2	390181	genome.wustl.edu	36	11	56513893	56513893	+	Nonstop_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56513893	56513893	A	C	SNP	OR5AK2	NM_001005323	human	genbank	54_36p	1	provisional	nonstop	c.929	p.*310S	0	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
SMTNL1	219537	genome.wustl.edu	36	11	57067040	57067040	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57067040	57067040	G	T	SNP	SMTNL1	NM_001105565	human	genbank	54_36p	1	provisional	nonsense	c.403	p.E135*	0.12	NULL	"HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain"	-	no_errors
CTNND1	1500	genome.wustl.edu	36	11	57329980	57329980	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57329980	57329980	C	T	SNP	CTNND1	NM_001085458	human	genbank	54_36p	1	validated	silent	c.1773	p.H591	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
OR9Q2	219957	genome.wustl.edu	36	11	57714852	57714852	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57714852	57714852	C	A	SNP	OR9Q2	NM_001005283	human	genbank	54_36p	1	provisional	missense	c.314	p.T105N	0.34	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10Q1	219960	genome.wustl.edu	36	11	57752201	57752201	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57752201	57752201	C	T	SNP	OR10Q1	NM_001004471	human	genbank	54_36p	-1	provisional	silent	c.723	p.R241	0.42	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10Q1	219960	genome.wustl.edu	36	11	57752498	57752498	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57752498	57752498	G	A	SNP	OR10Q1	NM_001004471	human	genbank	54_36p	-1	provisional	silent	c.426	p.R142	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5B2	390190	genome.wustl.edu	36	11	57946621	57946621	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	57946621	57946621	C	T	SNP	OR5B2	NM_001005566	human	genbank	54_36p	-1	provisional	silent	c.690	p.K230	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5B21	219968	genome.wustl.edu	36	11	58031608	58031608	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58031608	58031608	G	C	SNP	OR5B21	NM_001005218	human	genbank	54_36p	-1	provisional	missense	c.547	p.L183V	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5B21	219968	genome.wustl.edu	36	11	58031744	58031744	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58031744	58031744	A	G	SNP	OR5B21	NM_001005218	human	genbank	54_36p	-1	provisional	silent	c.411	p.G137	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5B21	219968	genome.wustl.edu	36	11	58031919	58031919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58031919	58031919	G	A	SNP	OR5B21	NM_001005218	human	genbank	54_36p	-1	provisional	missense	c.236	p.T79M	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
GLYATL2	219970	genome.wustl.edu	36	11	58361162	58361162	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58361162	58361162	A	T	SNP	GLYATL2	NM_145016	human	genbank	54_36p	-1	validated	missense	c.378	p.D126E	0	"HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)"	"HMMPfam_Gly_acyl_tr_C,HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
GLYATL1	92292	genome.wustl.edu	36	11	58467706	58467706	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58467706	58467706	A	C	SNP	GLYATL1	NM_080661	human	genbank	54_36p	1	provisional	silent	c.139	p.R47	0	HMMPfam_Gly_acyl_tr_N	"HMMPfam_Gly_acyl_tr_N,superfamily_Acyl_CoA_acyltransferase,HMMPfam_Gly_acyl_tr_C"	-	no_errors
OR52E4	390081	genome.wustl.edu	36	11	5862102	5862102	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	5862102	5862102	C	T	SNP	OR52E4	NM_001005165	human	genbank	54_36p	1	provisional	missense	c.4	p.P2S	0.17	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FAM111B	374393	genome.wustl.edu	36	11	58649138	58649138	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58649138	58649138	G	A	SNP	FAM111B	NM_198947	human	genbank	54_36p	1	validated	missense	c.992	p.S331N	0	NULL	superfamily_Trypsin-like serine proteases	-	no_errors
FAM111A	63901	genome.wustl.edu	36	11	58676814	58676814	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58676814	58676814	C	G	SNP	FAM111A	NM_022074	human	genbank	54_36p	1	validated	missense	c.1097	p.T366S	0.03	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys	-	no_errors
FAM111A	63901	genome.wustl.edu	36	11	58676910	58676910	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58676910	58676910	G	C	SNP	FAM111A	NM_022074	human	genbank	54_36p	1	validated	missense	c.1193	p.S398T	0	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys	-	no_errors
MPEG1	219972	genome.wustl.edu	36	11	58735419	58735419	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58735419	58735419	G	C	SNP	MPEG1	NM_001039396	human	genbank	54_36p	-1	validated	missense	c.1496	p.A499G	0.17	NULL	"PatternScan_MAC_PERFORIN,HMMPfam_MACPF,HMMSmart_MACPF"	-	no_errors
OR4D6	219983	genome.wustl.edu	36	11	58981869	58981869	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	58981869	58981869	A	C	SNP	OR4D6	NM_001004708	human	genbank	54_36p	1	provisional	missense	c.860	p.Y287S	0.99	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4D10	390197	genome.wustl.edu	36	11	59001705	59001705	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59001705	59001705	T	C	SNP	OR4D10	NM_001004705	human	genbank	54_36p	1	provisional	missense	c.227	p.I76T	0.97	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4D11	219986	genome.wustl.edu	36	11	59028161	59028161	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59028161	59028161	C	T	SNP	OR4D11	NM_001004706	human	genbank	54_36p	1	provisional	silent	c.537	p.C179	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
PATL1	219988	genome.wustl.edu	36	11	59179634	59179634	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59179634	59179634	G	C	SNP	PATL1	NM_152716	human	genbank	54_36p	-1	validated	silent	c.540	p.P180	0.91	HMMPfam_PAT1	HMMPfam_PAT1	-	no_errors
STX3	6809	genome.wustl.edu	36	11	59317198	59317198	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59317198	59317198	A	G	SNP	STX3	NM_004177	human	genbank	54_36p	1	provisional	missense	c.517	p.N173D	1	superfamily_t-snare proteins	"HMMSmart_SM00503,superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
GIF	2694	genome.wustl.edu	36	11	59366546	59366546	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59366546	59366546	T	A	SNP	GIF	NM_005142	human	genbank	54_36p	-1	reviewed	missense	c.457	p.I153L	0.01	HMMPfam_Cobalamin_bind	"HMMPfam_Cobalamin_bind,PatternScan_COBALAMIN_BINDING"	-	no_errors
PLAC1L	219990	genome.wustl.edu	36	11	59567597	59567597	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59567597	59567597	G	A	SNP	PLAC1L	NM_173801	human	genbank	54_36p	1	provisional	silent	c.144	p.A48	0.52	NULL	NULL	-	no_errors
MS4A2	2206	genome.wustl.edu	36	11	59619683	59619683	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59619683	59619683	T	C	SNP	MS4A2	NM_000139	human	genbank	54_36p	1	reviewed	missense	c.713	p.M238T	0	NULL	HMMPfam_CD20	-	no_errors
LOC643680	643680	genome.wustl.edu	36	11	59753973	59753973	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59753973	59753973	G	A	SNP	LOC643680	XM_931901	human	genbank	54_36p	-1	model	missense	c.59	p.P20L	0.47	NULL	HMMPfam_CD20	-	no_errors
MS4A7	58475	genome.wustl.edu	36	11	59917859	59917859	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59917859	59917859	A	T	SNP	MS4A7	NM_021201	human	genbank	54_36p	1	reviewed	silent	c.672	p.S224	0.01	NULL	HMMPfam_CD20	-	no_errors
MS4A1	931	genome.wustl.edu	36	11	59986428	59986428	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59986428	59986428	C	A	SNP	MS4A1	NM_021950	human	genbank	54_36p	1	reviewed	missense	c.5	p.T2K	0.98	NULL	HMMPfam_CD20	-	no_errors
MS4A1	931	genome.wustl.edu	36	11	59987071	59987071	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59987071	59987071	G	T	SNP	MS4A1	NM_021950	human	genbank	54_36p	1	reviewed	silent	c.180	p.G60	1	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
OR56A1	120796	genome.wustl.edu	36	11	6005123	6005123	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6005123	6005123	A	C	SNP	OR56A1	NM_001001917	human	genbank	54_36p	-1	provisional	missense	c.388	p.Y130D	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
MS4A15	219995	genome.wustl.edu	36	11	60287962	60287962	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60287962	60287962	G	T	SNP	MS4A15	NM_001098835	human	genbank	54_36p	1	validated	missense	c.180	p.L60F	0	NULL	"HMMPfam_CD20,PatternScan_IG_MHC"	-	no_errors
MS4A10	341116	genome.wustl.edu	36	11	60316331	60316331	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60316331	60316331	C	A	SNP	MS4A10	NM_206893	human	genbank	54_36p	1	validated	silent	c.321	p.I107	0.15	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
GPR44	11251	genome.wustl.edu	36	11	60377379	60377379	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60377379	60377379	C	A	SNP	GPR44	NM_004778	human	genbank	54_36p	-1	validated	silent	c.393	p.L131	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PGA3	643834	genome.wustl.edu	36	11	60728299	60728299	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60728299	60728299	C	A	SNP	PGA3	NM_001079807	human	genbank	54_36p	1	validated	silent	c.201	p.P67	0.19	superfamily_Acid proteases	"superfamily_Acid proteases,HMMPfam_A1_Propeptide,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
VWCE	220001	genome.wustl.edu	36	11	60798568	60798568	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60798568	60798568	C	T	SNP	VWCE	NM_152718	human	genbank	54_36p	-1	validated	silent	c.1560	p.E520	0.96	"HMMSmart_SM00215,HMMPfam_VWC,HMMSmart_SM00214"	###############################################################################################################################################################################################################################################################	-	no_errors
DDB1	1642	genome.wustl.edu	36	11	60835831	60835832	+	Splice_Site	DNP	CC	CC	AA	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	CC	CC	CC	AA	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60835831	60835832	CC	AA	DNP	DDB1	NM_001923	human	genbank	54_36p	-1	validated	splice_site	c.2277+2_2277+1	e19-1	1.000:1.000	-	-	-	no_errors
SDHAF2	54949	genome.wustl.edu	36	11	60962141	60962141	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	60962141	60962141	A	G	SNP	C11orf79	NM_017841	human	genbank	54_36p	1	predicted	missense	c.350	p.D117G	1	"superfamily_DUF339,HMMPfam_DUF339"	"superfamily_DUF339,HMMPfam_DUF339"	-	no_errors
C11orf66	220004	genome.wustl.edu	36	11	61011203	61011203	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61011203	61011203	G	C	SNP	C11orf66	NM_145017	human	genbank	54_36p	1	provisional	missense	c.958	p.G320R	1	NULL	NULL	-	no_errors
RPLP0P2	113157	genome.wustl.edu	36	11	61161394	61161394	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61161394	61161394	G	A	SNP	RPLP0P2	NR_002775	human	genbank	54_36p	1	inferred	rna	NULL	NULL	1	-	-	-	pseudogene
DAGLA	747	genome.wustl.edu	36	11	61265376	61265376	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61265376	61265376	A	C	SNP	DAGLA	NM_006133	human	genbank	54_36p	1	validated	missense	c.2150	p.D717A	0.99	NULL	"superfamily_SSF53474,HMMPfam_Lipase_3,PatternScan_LIPASE_SER"	-	no_errors
DAGLA	747	genome.wustl.edu	36	11	61267804	61267804	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61267804	61267804	G	C	SNP	DAGLA	NM_006133	human	genbank	54_36p	1	validated	missense	c.2396	p.G799A	1	NULL	"HMMPfam_Lipase_3,PatternScan_LIPASE_SER,superfamily_SSF53474"	-	no_errors
FEN1	2237	genome.wustl.edu	36	11	61320362	61320362	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61320362	61320362	A	T	SNP	FEN1	NM_004111	human	genbank	54_36p	1	reviewed	missense	c.953	p.E318V	1	superfamily_5' to 3' exonuclease C-terminal subdomain	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
SCGB2A2	4250	genome.wustl.edu	36	11	61794293	61794293	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61794293	61794293	C	T	SNP	SCGB2A2	NM_002411	human	genbank	54_36p	1	provisional	missense	c.29	p.A10V	0.01	HMMPfam_Uteroglobin	"HMMPfam_Uteroglobin,superfamily_Uteroglobin-like"	-	no_errors
C11orf42	160298	genome.wustl.edu	36	11	6188395	6188395	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6188395	6188395	C	A	SNP	C11orf42	NM_173525	human	genbank	54_36p	1	predicted	missense	c.812	p.P271H	0.99	NULL	NULL	-	no_errors
FAM160A2	84067	genome.wustl.edu	36	11	6195620	6195620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	6195620	6195620	C	T	SNP	FAM160A2	NM_032127	human	genbank	54_36p	-1	validated	missense	c.1814	p.R605Q	1	NULL	HMMPfam_RAI16-like	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62041703	62041703	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62041703	62041703	A	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.16762	p.L5588V	0	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62050359	62050359	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62050359	62050359	G	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.8106	p.I2702M	0.4	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62052072	62052072	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	62052072	62052072	G	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	silent	c.6393	p.V2131	0.69	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
EEF1G	1937	genome.wustl.edu	36	11	62097881	62097881	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	62097881	62097881	C	A	SNP	EEF1G	NM_001404	human	genbank	54_36p	-1	reviewed	missense	c.10	p.G4W	1	"HMMPfam_GST_N,superfamily_Thioredoxin-like"	"HMMPfam_GST_N,superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C,HMMPfam_EF1G,superfamily_eEF1-gamma domain"	-	no_errors
ROM1	6094	genome.wustl.edu	36	11	62137886	62137886	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62137886	62137886	G	A	SNP	ROM1	NM_000327	human	genbank	54_36p	1	reviewed	missense	c.557	p.R186H	1	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,superfamily_Tetraspanin,PatternScan_RDS_ROM1"	-	no_errors
GANAB	23193	genome.wustl.edu	36	11	62163677	62163677	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62163677	62163677	G	A	SNP	GANAB	NM_198335	human	genbank	54_36p	-1	validated	silent	c.141	p.C47	1	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2"	-	no_errors
TTC9C	283237	genome.wustl.edu	36	11	62253040	62253040	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62253040	62253040	G	T	SNP	TTC9C	NM_173810	human	genbank	54_36p	1	provisional	silent	c.144	p.P48	0	superfamily_TPR-like	"HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2"	-	no_errors
CCKBR	887	genome.wustl.edu	36	11	6248984	6248984	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6248984	6248984	G	C	SNP	CCKBR	NM_176875	human	genbank	54_36p	1	reviewed	missense	c.979	p.A327P	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SLC22A8	9376	genome.wustl.edu	36	11	62523831	62523831	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62523831	62523831	C	G	SNP	SLC22A8	NM_004254	human	genbank	54_36p	-1	reviewed	missense	c.497	p.G166A	0	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SLC22A25	387601	genome.wustl.edu	36	11	62688035	62688035	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62688035	62688035	C	T	SNP	SLC22A25	NM_199352	human	genbank	54_36p	-1	validated	missense	c.1481	p.R494Q	0	superfamily_MFS general substrate transporter	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SLC22A25	387601	genome.wustl.edu	36	11	62753695	62753695	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	62753695	62753695	G	A	SNP	SLC22A25	NM_199352	human	genbank	54_36p	-1	validated	silent	c.6	p.A2	0.92	NULL	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
LGALS12	85329	genome.wustl.edu	36	11	63039744	63039744	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63039744	63039744	C	T	SNP	LGALS12	NM_033101	human	genbank	54_36p	1	validated	missense	c.847	p.P283S	0.98	"HMMPfam_Gal-bind_lectin,superfamily_Concanavalin A-like lectins/glucanases"	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin"	-	no_errors
RARRES3	5920	genome.wustl.edu	36	11	63063575	63063575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63063575	63063575	G	T	SNP	RARRES3	NM_004585	human	genbank	54_36p	1	validated	missense	c.21	p.E7D	0	NULL	HMMPfam_NC	-	no_errors
PLA2G16	11145	genome.wustl.edu	36	11	63114251	63114251	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63114251	63114251	C	T	SNP	PLA2G16	NM_007069	human	genbank	54_36p	-1	validated	missense	c.284	p.R95Q	0.98	HMMPfam_NC	HMMPfam_NC	-	no_errors
RTN3	10313	genome.wustl.edu	36	11	63280187	63280187	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63280187	63280187	G	A	SNP	RTN3	NM_201428	human	genbank	54_36p	1	validated	missense	c.2965	p.A989T	0.66	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
MARK2	2011	genome.wustl.edu	36	11	63423980	63423980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63423980	63423980	G	A	SNP	MARK2	NM_017490	human	genbank	54_36p	1	reviewed	missense	c.491	p.S164N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_SM00165,superfamily_Kinase associated domain 1 KA1,HMMPfam_KA1"	-	no_errors
STIP1	10963	genome.wustl.edu	36	11	63718248	63718248	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63718248	63718248	A	G	SNP	STIP1	NM_006819	human	genbank	54_36p	1	validated	silent	c.231	p.R77	0.77	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMSmart_STI1"	-	no_errors
FERMT3	83706	genome.wustl.edu	36	11	63745130	63745130	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63745130	63745130	C	T	SNP	FERMT3	NM_178443	human	genbank	54_36p	1	validated	missense	c.1624	p.R542C	1	"HMMSmart_SM00295,HMMPfam_FERM_M,superfamily_Second domain of FERM,PatternScan_FERM_2"	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,PatternScan_FERM_2"	-	no_errors
PLCB3	5331	genome.wustl.edu	36	11	63786536	63786536	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63786536	63786536	G	A	SNP	PLCB3	NM_000932	human	genbank	54_36p	1	provisional	missense	c.2120	p.R707Q	1	superfamily_PLC-like phosphodiesterases	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C"	-	no_errors
CCDC88B	283234	genome.wustl.edu	36	11	63868078	63868078	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63868078	63868078	G	C	SNP	CCDC88B	NM_032251	human	genbank	54_36p	1	validated	missense	c.1489	p.V497L	0	NULL	NULL	-	no_errors
CCDC88B	283234	genome.wustl.edu	36	11	63876809	63876809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63876809	63876809	C	T	SNP	CCDC88B	NM_032251	human	genbank	54_36p	1	validated	missense	c.3374	p.A1125V	0.96	NULL	NULL	-	no_errors
CCDC88B	283234	genome.wustl.edu	36	11	63877766	63877766	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63877766	63877766	C	G	SNP	CCDC88B	NM_032251	human	genbank	54_36p	1	validated	missense	c.3837	p.D1279E	1	NULL	NULL	-	no_errors
RPS6KA4	8986	genome.wustl.edu	36	11	63885946	63885946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	63885946	63885946	G	A	SNP	RPS6KA4	NM_003942	human	genbank	54_36p	1	reviewed	missense	c.802	p.V268M	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ODR_DC_2_1,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C"	-	no_errors
SLC22A11	55867	genome.wustl.edu	36	11	64080374	64080374	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64080374	64080374	C	T	SNP	SLC22A11	NM_018484	human	genbank	54_36p	1	reviewed	silent	c.327	p.D109	0.04	NULL	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC22A12	116085	genome.wustl.edu	36	11	64115725	64115747	+	Frame_Shift_Del	DEL	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	-	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	-	TCGGCCGCCGTGCCCAGCCACCG	TCGGCCGCCGTGCCCAGCCACCG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64115725	64115747	TCGGCCGCCGTGCCCAGCCACCG	-	DEL	SLC22A12	NM_144585	human	genbank	54_36p	1	reviewed	frame_shift_del	c.121_143	p.S41fs	0.998:0.996:0.987:0.993:0.953:0.668:0.677:0.636:0.570:0.906:0.968:0.970:0.997:0.994:0.765:0.719:0.719:0.758:0.997:1.000:0.998:1.000:1.000	NULL	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"(deletion:cds_exon[64115605,64116006])"	no_errors
NRXN2	9379	genome.wustl.edu	36	11	64146987	64146987	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64146987	64146987	G	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	silent	c.3987	p.P1329	1	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294"	-	no_errors
ATG2A	23130	genome.wustl.edu	36	11	64436297	64436297	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64436297	64436297	T	A	SNP	ATG2A	NM_015104	human	genbank	54_36p	-1	provisional	missense	c.923	p.D308V	0.5	NULL	"PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C,PatternScan_ADH_ZINC"	-	no_errors
BATF2	116071	genome.wustl.edu	36	11	64513696	64513696	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64513696	64513696	C	T	SNP	BATF2	NM_138456	human	genbank	54_36p	-1	validated	silent	c.306	p.Q102	0.03	NULL	"HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
SNX15	29907	genome.wustl.edu	36	11	64556496	64556496	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64556496	64556496	G	T	SNP	SNX15	NM_013306	human	genbank	54_36p	1	reviewed	silent	c.153	p.R51	1	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00745,HMMPfam_MIT"	-	no_errors
TM7SF2	7108	genome.wustl.edu	36	11	64637637	64637637	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64637637	64637637	G	C	SNP	TM7SF2	NM_003273	human	genbank	54_36p	1	validated	missense	c.598	p.G200R	1	HMMPfam_ERG4_ERG24	"HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2"	-	no_errors
SYVN1	84447	genome.wustl.edu	36	11	64653850	64653850	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	64653850	64653850	G	A	SNP	SYVN1	NM_172230	human	genbank	54_36p	-1	reviewed	missense	c.1522	p.R508C	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
DNHD1	144132	genome.wustl.edu	36	11	6486753	6486753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6486753	6486753	G	C	SNP	DNHD1	NM_173589	human	genbank	54_36p	1	validated	missense	c.988	p.G330R	1	NULL	NULL	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65025006	65025006	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65025006	65025006	G	T	SNP	MALAT1	NR_002819	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65026678	65026678	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65026678	65026678	C	T	SNP	MALAT1	NR_002819	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65028263	65028264	+	RNA	INS	-	-	GA	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	-	-	-	GA	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65028263	65028264	-	GA	INS	MALAT1	NR_002819	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.996:1.000	-	-	-	no_errors
RELA	5970	genome.wustl.edu	36	11	65184219	65184219	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65184219	65184219	C	G	SNP	RELA	NM_021975	human	genbank	54_36p	-1	validated	missense	c.379	p.E127Q	1	"superfamily_p53-like transcription factors,HMMPfam_RHD"	"superfamily_p53-like transcription factors,HMMPfam_RHD,PatternScan_REL_1,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG"	-	no_errors
FIBP	9158	genome.wustl.edu	36	11	65408520	65408520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65408520	65408520	C	T	SNP	FIBP	NM_198897	human	genbank	54_36p	-1	reviewed	missense	c.944	p.R315H	1	HMMPfam_FIBP	HMMPfam_FIBP	-	no_errors
SF3B2	10992	genome.wustl.edu	36	11	65585750	65585750	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65585750	65585750	A	G	SNP	SF3B2	NM_006842	human	genbank	54_36p	1	reviewed	silent	c.1797	p.T599	0.1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_DUF382,HMMSmart_SM00581,HMMPfam_PSP"	-	no_errors
PACS1	55690	genome.wustl.edu	36	11	65759368	65759368	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65759368	65759368	C	G	SNP	PACS1	NM_018026	human	genbank	54_36p	1	reviewed	missense	c.2125	p.R709G	0.89	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors
PELI3	246330	genome.wustl.edu	36	11	65997320	65997320	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	65997320	65997320	C	T	SNP	PELI3	NM_145065	human	genbank	54_36p	1	validated	silent	c.489	p.F163	0.92	HMMPfam_Pellino	HMMPfam_Pellino	-	no_errors
DPP3	10072	genome.wustl.edu	36	11	66028817	66028817	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66028817	66028817	T	G	SNP	DPP3	NM_005700	human	genbank	54_36p	1	reviewed	silent	c.2037	p.L679	0.97	HMMPfam_Peptidase_M49	HMMPfam_Peptidase_M49	-	no_errors
CCDC87	55231	genome.wustl.edu	36	11	66116813	66116813	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66116813	66116813	T	A	SNP	CCDC87	NM_018219	human	genbank	54_36p	-1	validated	missense	c.250	p.I84F	0.03	NULL	NULL	-	no_errors
RBM14	10432	genome.wustl.edu	36	11	66148264	66148264	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66148264	66148264	A	G	SNP	RBM14	NM_006328	human	genbank	54_36p	1	validated	missense	c.341	p.Y114C	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1"	-	no_errors
RBM14	10432	genome.wustl.edu	36	11	66150529	66150529	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66150529	66150529	A	C	SNP	RBM14	NM_006328	human	genbank	54_36p	1	validated	missense	c.1824	p.L608F	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
RBM4	5936	genome.wustl.edu	36	11	66168159	66168159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66168159	66168159	G	A	SNP	RBM4	NM_002896	human	genbank	54_36p	1	validated	missense	c.1075	p.A359T	1	NULL	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
RCE1	9986	genome.wustl.edu	36	11	66367857	66367858	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66367857	66367858	CA	-	DEL	RCE1	NM_005133	human	genbank	54_36p	1	reviewed	frame_shift_del	c.237_238	p.S82fs	1.000:1.000	NULL	HMMPfam_Abi	"(deletion:cds_exon[66367806,66367908])"	no_errors
PC	5091	genome.wustl.edu	36	11	66375126	66375126	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66375126	66375126	T	C	SNP	PC	NM_000920	human	genbank	54_36p	-1	reviewed	silent	c.2184	p.E728	0.81	"superfamily_SSF51569,HMMPfam_HMGL-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SYT12	91683	genome.wustl.edu	36	11	66567861	66567861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66567861	66567861	G	T	SNP	SYT12	NM_177963	human	genbank	54_36p	1	provisional	missense	c.798	p.Q266H	1	"superfamily_C2_CaLB,HMMSmart_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
KDM2A	22992	genome.wustl.edu	36	11	66774457	66774457	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	66774457	66774457	A	C	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.2380	p.I794L	1	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,PatternScan_2FE2S_FER_1,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
KDM2A	22992	genome.wustl.edu	36	11	66778962	66778962	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	66778962	66778962	C	T	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.3349	p.R1117C	1	"HMMSmart_SM00367,superfamily_RNI-like"	"HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,PatternScan_2FE2S_FER_1,HMMSmart_SM00367,HMMPfam_JmjC,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,superfamily_RNI-like"	-	no_errors
TCIRG1	10312	genome.wustl.edu	36	11	67571713	67571713	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	67571713	67571713	C	A	SNP	TCIRG1	NM_006019	human	genbank	54_36p	1	reviewed	silent	c.1329	p.G443	1	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
SUV420H1	51111	genome.wustl.edu	36	11	67682106	67682106	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	67682106	67682106	C	A	SNP	SUV420H1	NM_017635	human	genbank	54_36p	-1	reviewed	missense	c.2283	p.K761N	1	NULL	"HMMPfam_SET,superfamily_SET domain,HMMSmart_SM00317"	-	no_errors
SUV420H1	51111	genome.wustl.edu	36	11	67682381	67682381	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	67682381	67682381	G	T	SNP	SUV420H1	NM_017635	human	genbank	54_36p	-1	reviewed	missense	c.2008	p.P670T	0.71	NULL	"HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	-	no_errors
OR6A2	8590	genome.wustl.edu	36	11	6772872	6772872	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6772872	6772872	G	T	SNP	OR6A2	NM_003696	human	genbank	54_36p	-1	provisional	missense	c.644	p.P215Q	0.27	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SHANK2	22941	genome.wustl.edu	36	11	70009842	70009842	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	70009842	70009842	C	A	SNP	SHANK2	NM_012309	human	genbank	54_36p	-1	reviewed	missense	c.2419	p.D807Y	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
NLRP14	338323	genome.wustl.edu	36	11	7020928	7020928	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7020928	7020928	G	A	SNP	NLRP14	NM_176822	human	genbank	54_36p	1	reviewed	missense	c.1095	p.M365I	0.98	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047"	-	no_errors
DHCR7	1717	genome.wustl.edu	36	11	70830965	70830965	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	70830965	70830965	G	A	SNP	DHCR7	NM_001360	human	genbank	54_36p	-1	validated	missense	c.404	p.T135I	1	NULL	"HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2"	-	no_errors
NUMA1	4926	genome.wustl.edu	36	11	71404009	71404023	+	In_Frame_Del	DEL	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	-	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	-	CCAGGGCATCTGCAG	CCAGGGCATCTGCAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71404009	71404023	CCAGGGCATCTGCAG	-	DEL	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	in_frame_del	c.2188_2174	p.AADAL725in_frame_del	0.016:0.017:0.018:0.006:0.002:0.000:0.000:0.000:0.002:0.005:0.001:0.007:0.006:0.000:0.079	NULL	superfamily_Prefoldin	"(deletion:cds_exon[71401589,71404954])"	no_errors
FOLR1	2348	genome.wustl.edu	36	11	71584666	71584666	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71584666	71584666	G	A	SNP	FOLR1	NM_000802	human	genbank	54_36p	1	reviewed	missense	c.571	p.E191K	0.38	HMMPfam_Folate_rec	HMMPfam_Folate_rec	-	no_errors
INPPL1	3636	genome.wustl.edu	36	11	71618898	71618898	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71618898	71618898	G	A	SNP	INPPL1	NM_001567	human	genbank	54_36p	1	reviewed	missense	c.1025	p.R342Q	1	NULL	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
PDE2A	5138	genome.wustl.edu	36	11	71977887	71977887	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	71977887	71977887	G	T	SNP	PDE2A	NM_002599	human	genbank	54_36p	-1	validated	missense	c.919	p.Q307K	1	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065"	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
FCHSD2	9873	genome.wustl.edu	36	11	72231902	72231902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	72231902	72231902	C	T	SNP	FCHSD2	NM_014824	human	genbank	54_36p	-1	validated	silent	c.1479	p.T493	0.81	NULL	"HMMPfam_FCH,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
P2RY2	5029	genome.wustl.edu	36	11	72623231	72623231	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	72623231	72623231	A	T	SNP	P2RY2	NM_002564	human	genbank	54_36p	1	reviewed	missense	c.379	p.I127F	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
P2RY6	5031	genome.wustl.edu	36	11	72686049	72686049	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	72686049	72686049	G	T	SNP	P2RY6	NM_004154	human	genbank	54_36p	1	reviewed	missense	c.838	p.A280S	0.88	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
PLEKHB1	58473	genome.wustl.edu	36	11	73039304	73039304	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	73039304	73039304	G	T	SNP	PLEKHB1	NM_021200	human	genbank	54_36p	1	validated	silent	c.153	p.L51	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
C2CD3	26005	genome.wustl.edu	36	11	73521642	73521642	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	73521642	73521642	C	G	SNP	C2CD3	NM_015531	human	genbank	54_36p	-1	validated	missense	c.1112	p.R371P	0	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
PGM2L1	283209	genome.wustl.edu	36	11	73734324	73734324	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	73734324	73734324	G	A	SNP	PGM2L1	NM_173582	human	genbank	54_36p	-1	validated	silent	c.1056	p.F352	1	superfamily_Phosphoglucomutase first 3 domains	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase C-terminal domain"	-	no_errors
SYT9	143425	genome.wustl.edu	36	11	7395807	7395807	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7395807	7395807	G	T	SNP	SYT9	NM_175733	human	genbank	54_36p	1	provisional	silent	c.1209	p.L403	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SYT9	143425	genome.wustl.edu	36	11	7398412	7398412	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7398412	7398412	G	A	SNP	SYT9	NM_175733	human	genbank	54_36p	1	provisional	silent	c.1437	p.K479	1	"HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
POLD3	10714	genome.wustl.edu	36	11	74024916	74024916	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	74024916	74024916	A	C	SNP	POLD3	NM_006591	human	genbank	54_36p	1	validated	missense	c.1146	p.K382N	1	HMMPfam_CDC27	HMMPfam_CDC27	-	no_errors
RNF169	254225	genome.wustl.edu	36	11	74224512	74224512	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	74224512	74224512	A	G	SNP	RNF169	NM_001098638	human	genbank	54_36p	1	validated	missense	c.1216	p.I406V	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
OLFML1	283298	genome.wustl.edu	36	11	7466209	7466209	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7466209	7466209	T	A	SNP	OLFML1	NM_198474	human	genbank	54_36p	1	provisional	silent	c.405	p.T135	0.29	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
OLFML1	283298	genome.wustl.edu	36	11	7487543	7487543	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7487543	7487543	C	G	SNP	OLFML1	NM_198474	human	genbank	54_36p	1	provisional	missense	c.757	p.P253A	0.85	"HMMPfam_OLF,HMMSmart_SM00284"	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
MOGAT2	80168	genome.wustl.edu	36	11	75106597	75106597	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75106597	75106597	C	A	SNP	MOGAT2	NM_025098	human	genbank	54_36p	1	provisional	missense	c.16	p.P6T	0.92	NULL	HMMPfam_DAGAT	-	no_errors
MOGAT2	80168	genome.wustl.edu	36	11	75116767	75116767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75116767	75116767	G	A	SNP	MOGAT2	NM_025098	human	genbank	54_36p	1	provisional	missense	c.580	p.A194T	1	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
PRKRIR	5612	genome.wustl.edu	36	11	75739612	75739612	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75739612	75739612	A	G	SNP	PRKRIR	NM_004705	human	genbank	54_36p	-1	provisional	missense	c.2230	p.Y744H	1	NULL	"HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC"	-	no_errors
PRKRIR	5612	genome.wustl.edu	36	11	75740173	75740173	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75740173	75740173	G	A	SNP	PRKRIR	NM_004705	human	genbank	54_36p	-1	provisional	missense	c.1669	p.R557C	1	NULL	"HMMPfam_THAP,HMMSmart_SM00692,HMMPfam_hATC"	-	no_errors
C11orf30	56946	genome.wustl.edu	36	11	75852728	75852728	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	75852728	75852728	T	C	SNP	C11orf30	NM_020193	human	genbank	54_36p	1	validated	missense	c.787	p.F263L	1	NULL	HMMPfam_ENT	-	no_errors
PPFIBP2	8495	genome.wustl.edu	36	11	7617649	7617649	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	7617649	7617649	C	T	SNP	PPFIBP2	NM_003621	human	genbank	54_36p	1	validated	silent	c.1347	p.D449	0.08	NULL	"HMMPfam_Integrase_DNA,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76548208	76548208	+	Silent	SNP	C	G	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	76548208	76548208	C	G	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	silent	c.1071	p.S357	0.3	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76578105	76578105	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	76578105	76578105	G	T	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	missense	c.3572	p.G1191V	1	"HMMPfam_MyTH4,HMMSmart_SM00139"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO7A	4647	genome.wustl.edu	36	11	76591795	76591795	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	76591795	76591795	G	C	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	missense	c.5097	p.K1699N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
INTS4	92105	genome.wustl.edu	36	11	77349752	77349752	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77349752	77349752	G	C	SNP	INTS4	NM_033547	human	genbank	54_36p	-1	validated	silent	c.552	p.V184	0.63	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
ALG8	79053	genome.wustl.edu	36	11	77516105	77516105	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77516105	77516105	G	C	SNP	ALG8	NM_024079	human	genbank	54_36p	-1	reviewed	missense	c.121	p.R41G	1	HMMPfam_Alg6_Alg8	HMMPfam_Alg6_Alg8	-	no_errors
USP35	57558	genome.wustl.edu	36	11	77594679	77594679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77594679	77594679	C	G	SNP	USP35	NM_020798	human	genbank	54_36p	1	validated	silent	c.1341	p.G447	0.92	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
GAB2	9846	genome.wustl.edu	36	11	77612115	77612115	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77612115	77612115	C	T	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	missense	c.1558	p.D520N	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
NARS2	79731	genome.wustl.edu	36	11	77954928	77954928	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77954928	77954928	C	G	SNP	NARS2	NM_024678	human	genbank	54_36p	-1	provisional	missense	c.411	p.E137D	0.99	"HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases"	"superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
NARS2	79731	genome.wustl.edu	36	11	77957396	77957396	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	77957396	77957396	C	G	SNP	NARS2	NM_024678	human	genbank	54_36p	-1	provisional	missense	c.302	p.S101T	1	"HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins"	"HMMPfam_tRNA-synt_2,HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
ODZ4	26011	genome.wustl.edu	36	11	78065017	78065017	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	78065017	78065017	C	T	SNP	ODZ4	NM_001098816	human	genbank	54_36p	-1	validated	missense	c.3338	p.G1113D	1	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_TolB C-terminal domain,HMMPfam_NHL,HMMPfam_RHS_repeat"	-	no_errors
TUB	7275	genome.wustl.edu	36	11	8079097	8079097	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	8079097	8079097	T	A	SNP	TUB	NM_003320	human	genbank	54_36p	1	reviewed	missense	c.1529	p.F510Y	1	"superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1"	"superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2"	-	no_errors
PCF11	51585	genome.wustl.edu	36	11	82546129	82546129	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	82546129	82546129	A	C	SNP	PCF11	ENST00000298281	human	ensembl	54_36p	1	known	silent	c.297	p.A99	1	NULL	"superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618"	-	no_start_codon
DLG2	1740	genome.wustl.edu	36	11	82858038	82858038	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	82858038	82858038	C	T	SNP	DLG2	NM_001364	human	genbank	54_36p	-1	reviewed	missense	c.2158	p.E720K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin"	###############################################################################################################################################################################################################################################################	-	no_errors
DLG2	1740	genome.wustl.edu	36	11	82860373	82860373	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	82860373	82860373	C	T	SNP	DLG2	NM_001364	human	genbank	54_36p	-1	reviewed	missense	c.2075	p.R692Q	1	"superfamily_SH3-domain,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
DLG2	1740	genome.wustl.edu	36	11	83175364	83175364	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	83175364	83175364	T	C	SNP	DLG2	ENST00000398301	human	ensembl	54_36p	-1	known	silent	c.1644	p.K548	0	superfamily_PDZ	"HMMPfam_MAGUK_N_PEST,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_PDZ_assoc,PatternScan_SERPIN"	-	no_errors
STK33	65975	genome.wustl.edu	36	11	8370708	8370708	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	8370708	8370708	C	T	SNP	STK33	NM_030906	human	genbank	54_36p	-1	validated	silent	c.1470	p.V490	0	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
STK33	65975	genome.wustl.edu	36	11	8442866	8442866	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	8442866	8442866	G	A	SNP	STK33	NM_030906	human	genbank	54_36p	-1	validated	missense	c.419	p.T140M	0.75	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
TMEM126A	84233	genome.wustl.edu	36	11	85042847	85042847	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85042847	85042847	T	C	SNP	TMEM126A	NM_032273	human	genbank	54_36p	1	provisional	missense	c.179	p.V60A	1	HMMPfam_DUF1370	HMMPfam_DUF1370	-	no_errors
TMEM126A	84233	genome.wustl.edu	36	11	85044369	85044369	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85044369	85044369	G	A	SNP	TMEM126A	NM_032273	human	genbank	54_36p	1	provisional	missense	c.364	p.A122T	1	HMMPfam_DUF1370	HMMPfam_DUF1370	-	no_errors
CREBZF	58487	genome.wustl.edu	36	11	85052903	85052903	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85052903	85052903	C	A	SNP	CREBZF	NM_001039618	human	genbank	54_36p	-1	validated	missense	c.665	p.R222L	1	HMMSmart_BRLZ	"PatternScan_BZIP_BASIC,HMMSmart_BRLZ"	-	no_errors
SYTL2	54843	genome.wustl.edu	36	11	85113990	85113990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85113990	85113990	C	T	SNP	SYTL2	NM_206927	human	genbank	54_36p	-1	reviewed	silent	c.1158	p.S386	1	NULL	"PatternScan_PHOSPHOPANTETHEINE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
PICALM	8301	genome.wustl.edu	36	11	85363443	85363443	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	11	85363443	85363443	C	T	SNP	PICALM	NM_007166	human	genbank	54_36p	-1	validated	missense	c.1900	p.V634I	1	NULL	"superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_GAT-like domain"	-	no_errors
TYR	7299	genome.wustl.edu	36	11	88564148	88564148	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	88564148	88564148	A	C	SNP	TYR	NM_000372	human	genbank	54_36p	1	reviewed	missense	c.950	p.D317A	1	"superfamily_Di-copper centre-containing domain,HMMPfam_Tyrosinase"	"superfamily_Di-copper centre-containing domain,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2"	-	no_errors
NOX4	50507	genome.wustl.edu	36	11	88863277	88863277	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	88863277	88863277	C	A	SNP	NOX4	NM_016931	human	genbank	54_36p	-1	reviewed	missense	c.150	p.L50F	1	NULL	"HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6"	-	no_errors
FOLH1B	219595	genome.wustl.edu	36	11	89053438	89053438	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	89053438	89053438	G	A	SNP	PSMAL	NM_153696	human	genbank	54_36p	1	predicted	silent	c.462	p.L154	1	superfamily_SSF53187	"superfamily_SSF53187,HMMPfam_Peptidase_M28,superfamily_Transferrin_rcpt-like_dimerise,HMMPfam_TFR_dimer"	-	no_errors
FOLH1B	219595	genome.wustl.edu	36	11	89069480	89069480	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	89069480	89069480	C	A	SNP	PSMAL	NM_153696	human	genbank	54_36p	1	predicted	missense	c.1078	p.L360I	1	"HMMPfam_TFR_dimer,superfamily_Transferrin_rcpt-like_dimerise"	"HMMPfam_TFR_dimer,superfamily_Transferrin_rcpt-like_dimerise,HMMPfam_Peptidase_M28,superfamily_SSF53187"	-	no_errors
HEPHL1	341208	genome.wustl.edu	36	11	93394202	93394202	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93394202	93394202	C	T	SNP	HEPHL1	NM_001098672	human	genbank	54_36p	1	validated	missense	c.20	p.A7V	0.51	NULL	"superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2"	-	no_errors
HEPHL1	341208	genome.wustl.edu	36	11	93478930	93478930	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93478930	93478930	A	T	SNP	HEPHL1	NM_001098672	human	genbank	54_36p	1	validated	missense	c.3031	p.S1011C	1	"superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2"	"PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2,superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3"	-	no_errors
GPR83	10888	genome.wustl.edu	36	11	93753026	93753026	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93753026	93753026	G	T	SNP	GPR83	NM_016540	human	genbank	54_36p	-1	validated	silent	c.1209	p.T403	0.93	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CEP57	9702	genome.wustl.edu	36	11	95203847	95203847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	95203847	95203847	C	A	SNP	CEP57	NM_014679	human	genbank	54_36p	1	validated	missense	c.1282	p.Q428K	0.99	NULL	HMMPfam_DUF1167	-	no_errors
MAML2	84441	genome.wustl.edu	36	11	95351789	95351789	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	11	95351789	95351789	G	A	SNP	MAML2	NM_032427	human	genbank	54_36p	-1	validated	missense	c.3442	p.L1148F	1	NULL	HMMPfam_MamL-1	-	no_errors
MAML2	84441	genome.wustl.edu	36	11	95465303	95465303	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	95465303	95465303	T	C	SNP	MAML2	NM_032427	human	genbank	54_36p	-1	validated	missense	c.1540	p.M514V	0.42	NULL	HMMPfam_MamL-1	-	no_errors
SWAP70	23075	genome.wustl.edu	36	11	9702956	9702956	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	9702956	9702956	C	A	SNP	SWAP70	NM_015055	human	genbank	54_36p	1	validated	missense	c.590	p.S197Y	1	NULL	"superfamily_SSF47473,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
SWAP70	23075	genome.wustl.edu	36	11	9726064	9726064	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	9726064	9726064	C	T	SNP	SWAP70	NM_015055	human	genbank	54_36p	1	validated	missense	c.1439	p.A480V	0.98	NULL	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,superfamily_SSF50729"	-	no_errors
CNTN5	53942	genome.wustl.edu	36	11	99567102	99567102	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	99567102	99567102	C	G	SNP	CNTN5	NM_014361	human	genbank	54_36p	1	reviewed	missense	c.1615	p.L539V	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
RBMXP4	100132580	genome.wustl.edu	36	4	110488171	110488171	+	RNA	SNP	G	A	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	110488171	110488171	G	A	SNP	LOC100132580	XR_037807	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
FDXACB1	91893	genome.wustl.edu	36	11	111251600	111251600	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	111251600	111251600	A	T	SNP	FDXACB1	NM_138378	human	genbank	54_36p	-1	validated	missense	c.1131	p.F377L	1	NULL	"HMMPfam_DUF2431,superfamily_Anticodon-binding domain of PheRS,HMMPfam_FDX-ACB"	-	no_errors
LOC100132843	100132843	genome.wustl.edu	36	10	111430605	111430605	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	111430605	111430605	G	A	SNP	LOC100132843	XR_037957	human	genbank	54_36p	1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
LOC100129929	100129929	genome.wustl.edu	36	3	11900053	11900053	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	11900053	11900053	G	T	SNP	LOC100129929	XM_001716291	human	genbank	54_36p	1	model	nonsense	c.715	p.E239*	1	NULL	NULL	-	no_errors
ANO4	121601	genome.wustl.edu	36	12	100014552	100014552	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	100014552	100014552	G	A	SNP	ANO4	NM_178826	human	genbank	54_36p	1	validated	missense	c.1741	p.G581R	1	NULL	HMMPfam_DUF590	-	no_errors
GNPTAB	79158	genome.wustl.edu	36	12	100677965	100677965	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	100677965	100677965	G	A	SNP	GNPTAB	NM_024312	human	genbank	54_36p	-1	validated	nonsense	c.3223	p.Q1075*	1	NULL	"HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1"	-	no_errors
CLEC9A	283420	genome.wustl.edu	36	12	10098181	10098181	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10098181	10098181	G	C	SNP	CLEC9A	NM_207345	human	genbank	54_36p	1	provisional	missense	c.136	p.G46R	0.05	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
PAH	5053	genome.wustl.edu	36	12	101812699	101812706	+	Frame_Shift_Del	DEL	CTCAAGAT	CTCAAGAT	-	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	CTCAAGAT	CTCAAGAT	CTCAAGAT	-	CTCAAGAT	CTCAAGAT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	101812699	101812706	CTCAAGAT	-	DEL	PAH	NM_000277	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.296_289	p.I97fs	0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_SSF55021,HMMPfam_ACT"	"superfamily_SSF55021,HMMPfam_ACT,superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL"	"(deletion:cds_exon[101812643,101812826])"	no_errors
C12orf42	374470	genome.wustl.edu	36	12	102220257	102220257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	102220257	102220257	G	A	SNP	C12orf42	NM_001099336	human	genbank	54_36p	-1	validated	missense	c.842	p.A281V	0.94	NULL	NULL	-	no_errors
C12orf42	374470	genome.wustl.edu	36	12	102220460	102220460	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102220460	102220460	G	A	SNP	C12orf42	NM_001099336	human	genbank	54_36p	-1	validated	silent	c.639	p.A213	0	NULL	NULL	-	no_errors
C12orf59	120939	genome.wustl.edu	36	12	10223492	10223492	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10223492	10223492	C	T	SNP	C12orf59	NM_153022	human	genbank	54_36p	1	validated	silent	c.36	p.S12	0.95	NULL	NULL	-	no_errors
STAB2	55576	genome.wustl.edu	36	12	102508878	102508878	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102508878	102508878	T	A	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.155	p.V52D	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	genome.wustl.edu	36	12	102578251	102578251	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102578251	102578251	C	T	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.1747	p.L583F	1	"HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	genome.wustl.edu	36	12	102655613	102655613	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102655613	102655613	C	T	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	silent	c.5622	p.A1874	1	"HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
NT5DC3	51559	genome.wustl.edu	36	12	102732871	102732871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102732871	102732871	G	A	SNP	NT5DC3	NM_001031701	human	genbank	54_36p	-1	validated	missense	c.367	p.R123W	1	superfamily_HAD-like	"superfamily_HAD-like,HMMPfam_5_nucleotid"	-	no_errors
TDG	6996	genome.wustl.edu	36	12	102900832	102900832	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102900832	102900832	G	T	SNP	TDG	NM_003211	human	genbank	54_36p	1	reviewed	missense	c.604	p.D202Y	1	"superfamily_UDNA_glycsylseSF,HMMPfam_UDG"	"superfamily_UDNA_glycsylseSF,HMMPfam_UDG"	-	no_errors
TDG	6996	genome.wustl.edu	36	12	102903529	102903529	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	102903529	102903529	C	T	SNP	TDG	NM_003211	human	genbank	54_36p	1	reviewed	missense	c.983	p.A328V	1	NULL	"HMMPfam_UDG,superfamily_UDNA_glycsylseSF"	-	no_errors
HCFC2	29915	genome.wustl.edu	36	12	103011382	103011382	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	103011382	103011382	C	T	SNP	HCFC2	NM_013320	human	genbank	54_36p	1	reviewed	missense	c.1373	p.T458M	0	"HMMSmart_SM00060,superfamily_Fibronectin type III"	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3"	-	no_errors
SLC41A2	84102	genome.wustl.edu	36	12	103845916	103845916	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	103845916	103845916	T	C	SNP	SLC41A2	NM_032148	human	genbank	54_36p	-1	validated	missense	c.271	p.T91A	1	NULL	HMMPfam_MgtE	-	no_errors
KLRC3	3823	genome.wustl.edu	36	12	10462249	10462249	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10462249	10462249	G	A	SNP	KLRC3	NM_007333	human	genbank	54_36p	-1	reviewed	silent	c.447	p.N149	0.01	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	-	no_errors
KLRC3	3823	genome.wustl.edu	36	12	10464245	10464245	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10464245	10464245	T	C	SNP	KLRC3	NM_007333	human	genbank	54_36p	-1	reviewed	missense	c.172	p.I58V	0	NULL	"HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like"	-	no_errors
NUAK1	9891	genome.wustl.edu	36	12	104985028	104985028	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	104985028	104985028	G	C	SNP	NUAK1	NM_014840	human	genbank	54_36p	-1	validated	silent	c.1668	p.V556	0.05	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TCP11L2	255394	genome.wustl.edu	36	12	105239497	105239497	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	105239497	105239497	T	C	SNP	TCP11L2	NM_152772	human	genbank	54_36p	1	provisional	missense	c.518	p.V173A	0.97	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
POLR3B	55703	genome.wustl.edu	36	12	105281792	105281792	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	105281792	105281792	G	T	SNP	POLR3B	NM_018082	human	genbank	54_36p	1	provisional	silent	c.87	p.L29	1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	###############################################################################################################################################################################################################################################################	-	no_errors
RIC8B	55188	genome.wustl.edu	36	12	105732884	105732884	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	105732884	105732884	T	G	SNP	RIC8B	NM_018157	human	genbank	54_36p	1	validated	missense	c.413	p.L138R	1	"superfamily_ARM-type_fold,HMMPfam_Ric8"	"superfamily_ARM-type_fold,HMMPfam_Ric8"	-	no_errors
TMEM119	338773	genome.wustl.edu	36	12	107509713	107509713	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107509713	107509713	G	A	SNP	TMEM119	NM_181724	human	genbank	54_36p	-1	validated	silent	c.576	p.G192	0.01	NULL	NULL	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107717052	107717052	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107717052	107717052	G	A	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.1202	p.A401V	0.98	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1"	"superfamily_DEK C-terminal domain,HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107723085	107723085	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107723085	107723085	C	T	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.830	p.R277H	1	"HMMPfam_DEK_C,superfamily_DEK C-terminal domain"	"HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_DEK C-terminal domain,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
SSH1	54434	genome.wustl.edu	36	12	107770579	107770579	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107770579	107770579	T	C	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.74	p.E25G	1	NULL	"HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_DEK C-terminal domain,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
DAO	1610	genome.wustl.edu	36	12	107805409	107805409	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	107805409	107805409	C	T	SNP	DAO	NM_001917	human	genbank	54_36p	1	reviewed	silent	c.249	p.N83	0.65	"superfamily_Nucleotide-binding domain,HMMPfam_DAO"	"superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,PatternScan_AA_TRNA_LIGASE_I,PatternScan_DAO"	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108138838	108138838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108138838	108138838	C	G	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.3383	p.T1128R	0.39	HMMPfam_ACC_central	###############################################################################################################################################################################################################################################################	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108144727	108144727	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108144727	108144727	G	A	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	silent	c.3597	p.S1199	0.29	HMMPfam_ACC_central	###############################################################################################################################################################################################################################################################	-	no_errors
ACACB	32	genome.wustl.edu	36	12	108145067	108145067	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108145067	108145067	G	T	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.3759	p.M1253I	1	HMMPfam_ACC_central	###############################################################################################################################################################################################################################################################	-	no_errors
MYO1H	283446	genome.wustl.edu	36	12	108361889	108361889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	108361889	108361889	C	T	SNP	MYO1H	NM_001101421	human	genbank	54_36p	1	inferred	missense	c.2347	p.R783W	0.98	NULL	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1"	-	no_errors
TAS2R8	50836	genome.wustl.edu	36	12	10850410	10850410	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	10850410	10850410	A	T	SNP	TAS2R8	NM_023918	human	genbank	54_36p	-1	reviewed	missense	c.437	p.L146H	0.01	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
TAS2R9	50835	genome.wustl.edu	36	12	10853316	10853316	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	10853316	10853316	G	T	SNP	TAS2R9	NM_023917	human	genbank	54_36p	-1	reviewed	missense	c.626	p.T209N	0.18	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
IFT81	28981	genome.wustl.edu	36	12	109065708	109065708	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109065708	109065708	C	G	SNP	IFT81	NM_014055	human	genbank	54_36p	1	validated	missense	c.920	p.S307C	1	NULL	NULL	-	no_errors
ATP2A2	488	genome.wustl.edu	36	12	109204980	109204980	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109204980	109204980	T	C	SNP	ATP2A2	NM_170665	human	genbank	54_36p	1	reviewed	silent	c.216	p.S72	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N"	###############################################################################################################################################################################################################################################################	-	no_errors
ARPC3	10094	genome.wustl.edu	36	12	109362576	109362576	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109362576	109362576	G	T	SNP	ARPC3	NM_005719	human	genbank	54_36p	-1	reviewed	missense	c.107	p.T36K	1	"HMMPfam_P21-Arc,superfamily_Arp2/3 complex 21 kDa subunit ARPC3"	"HMMPfam_P21-Arc,superfamily_Arp2/3 complex 21 kDa subunit ARPC3"	-	no_errors
CCDC63	160762	genome.wustl.edu	36	12	109780780	109780780	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	109780780	109780780	A	C	SNP	CCDC63	NM_152591	human	genbank	54_36p	1	provisional	missense	c.187	p.I63L	0.27	NULL	NULL	-	no_errors
CUX2	23316	genome.wustl.edu	36	12	110230518	110230518	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110230518	110230518	C	G	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	missense	c.1156	p.Q386E	1	NULL	"HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
CUX2	23316	genome.wustl.edu	36	12	110269778	110269778	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110269778	110269778	G	C	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	missense	c.3727	p.G1243R	0.93	superfamily_Homeodomain-like	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
TAS2R50	259296	genome.wustl.edu	36	12	11030719	11030719	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	11030719	11030719	G	C	SNP	TAS2R50	NM_176890	human	genbank	54_36p	-1	validated	missense	c.8	p.T3S	0	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
SH2B3	10019	genome.wustl.edu	36	12	110369574	110369574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110369574	110369574	C	G	SNP	SH2B3	NM_005475	human	genbank	54_36p	1	validated	missense	c.1079	p.S360C	1	superfamily_SH2 domain	"HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
ACAD10	80724	genome.wustl.edu	36	12	110671532	110671532	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110671532	110671532	C	T	SNP	ACAD10	NM_025247	human	genbank	54_36p	1	reviewed	silent	c.2817	p.R939	0.51	"HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ALDH2	217	genome.wustl.edu	36	12	110712635	110712635	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110712635	110712635	C	G	SNP	ALDH2	NM_000690	human	genbank	54_36p	1	reviewed	silent	c.567	p.L189	0.99	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh"	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
TMEM116	89894	genome.wustl.edu	36	12	110856111	110856111	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	110856111	110856111	C	G	SNP	TMEM116	NM_138341	human	genbank	54_36p	-1	provisional	missense	c.419	p.R140P	0.06	NULL	NULL	-	no_errors
NAA25	80018	genome.wustl.edu	36	12	111000884	111000884	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111000884	111000884	C	T	SNP	C12orf30	NM_024953	human	genbank	54_36p	-1	validated	silent	c.522	p.L174	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_NatB_MDM20"	-	no_errors
C12orf51	283450	genome.wustl.edu	36	12	111094866	111094866	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111094866	111094866	C	T	SNP	C12orf51	NM_001109662	human	genbank	54_36p	-1	validated	missense	c.10511	p.C3504Y	1	NULL	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
TAS2R43	259289	genome.wustl.edu	36	12	11135240	11135240	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	11135240	11135240	G	C	SNP	TAS2R43	NM_176884	human	genbank	54_36p	-1	provisional	missense	c.856	p.L286V	0.01	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
RPH3A	22895	genome.wustl.edu	36	12	111805509	111805509	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111805509	111805509	G	A	SNP	RPH3A	NM_014954	human	genbank	54_36p	1	validated	missense	c.1343	p.R448Q	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
OAS1	4938	genome.wustl.edu	36	12	111833292	111833292	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	111833292	111833292	G	A	SNP	OAS1	NM_001032409	human	genbank	54_36p	1	reviewed	missense	c.523	p.E175K	0	"superfamily_Nucleotidyltransferase,HMMPfam_OAS1_C"	"superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2"	-	no_errors
DTX1	1840	genome.wustl.edu	36	12	112019056	112019056	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	112019056	112019056	G	A	SNP	DTX1	NM_004416	human	genbank	54_36p	1	reviewed	missense	c.1792	p.A598T	1	NULL	"PatternScan_ZF_RING_1,HMMPfam_WWE,HMMSmart_WWE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
TBX5	6910	genome.wustl.edu	36	12	113278030	113278030	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	113278030	113278030	T	A	SNP	TBX5	NM_000192	human	genbank	54_36p	-1	reviewed	missense	c.1247	p.Q416L	1	NULL	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
FBXW8	26259	genome.wustl.edu	36	12	115850266	115850266	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	115850266	115850266	T	C	SNP	FBXW8	NM_153348	human	genbank	54_36p	1	reviewed	missense	c.374	p.I125T	1	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
NOS1	4842	genome.wustl.edu	36	12	116178198	116178198	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	116178198	116178198	G	T	SNP	NOS1	ENST00000338101	human	ensembl	54_36p	-1	known	silent	c.2559	p.P853	1	"superfamily_Flavoproteins,HMMPfam_Flavodoxin_1"	###############################################################################################################################################################################################################################################################	-	no_errors
SRRM4	84530	genome.wustl.edu	36	12	118076550	118076550	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118076550	118076550	T	G	SNP	KIAA1853	NM_194286	human	genbank	54_36p	1	validated	missense	c.1511	p.L504R	1	NULL	NULL	-	no_errors
CCDC60	160777	genome.wustl.edu	36	12	118401332	118401332	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118401332	118401332	G	A	SNP	CCDC60	NM_178499	human	genbank	54_36p	1	validated	missense	c.392	p.R131H	0.18	NULL	NULL	-	no_errors
CCDC60	160777	genome.wustl.edu	36	12	118422311	118422311	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118422311	118422311	C	A	SNP	CCDC60	NM_178499	human	genbank	54_36p	1	validated	missense	c.603	p.D201E	1	NULL	NULL	-	no_errors
CIT	11113	genome.wustl.edu	36	12	118693045	118693045	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118693045	118693045	C	T	SNP	CIT	ENST00000392521	human	ensembl	54_36p	-1	known	missense	c.2135	p.R712H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CIT	11113	genome.wustl.edu	36	12	118695044	118695044	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	118695044	118695044	T	C	SNP	CIT	NM_007174	human	genbank	54_36p	-1	validated	silent	c.1995	p.A665	0.91	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CCDC64	92558	genome.wustl.edu	36	12	119003073	119003073	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	119003073	119003073	G	C	SNP	CCDC64	NM_207311	human	genbank	54_36p	1	validated	splice_site	c.1309-1	e7-1	1	-	-	-	no_errors
GCN1L1	10985	genome.wustl.edu	36	12	119080063	119080063	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	119080063	119080063	G	A	SNP	GCN1L1	NM_006836	human	genbank	54_36p	-1	validated	silent	c.3060	p.P1020	0	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
RNF10	9921	genome.wustl.edu	36	12	119479604	119479604	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	119479604	119479604	G	A	SNP	RNF10	NM_014868	human	genbank	54_36p	1	reviewed	missense	c.782	p.S261N	1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
ANAPC5	51433	genome.wustl.edu	36	12	120242632	120242633	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	GC	GC	GC	AT	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	120242632	120242633	GC	AT	DNP	ANAPC5	NM_016237	human	genbank	54_36p	-1	reviewed	missense	c.1454_1453	p.A485I	1.000:0.998	"superfamily_TPR-like,HMMSmart_SM00028"	"superfamily_TPR-like,HMMSmart_SM00028"	-	no_errors
KDM2B	84678	genome.wustl.edu	36	12	120362202	120362202	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	120362202	120362202	C	A	SNP	FBXL10	NM_032590	human	genbank	54_36p	-1	reviewed	missense	c.3670	p.D1224Y	1	"superfamily_RNI-like,HMMSmart_SM00367"	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
RHOF	54509	genome.wustl.edu	36	12	120701841	120701841	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	120701841	120701841	G	C	SNP	RHOF	NM_019034	human	genbank	54_36p	-1	validated	missense	c.582	p.S194R	0.94	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
MLXIP	22877	genome.wustl.edu	36	12	121180101	121180101	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121180101	121180101	A	G	SNP	MLXIP	ENST00000319080	human	ensembl	54_36p	1	known	missense	c.709	p.K237E	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
MLXIP	22877	genome.wustl.edu	36	12	121189425	121189425	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121189425	121189425	G	T	SNP	MLXIP	NM_014938	human	genbank	54_36p	1	validated	nonsense	c.2095	p.G699*	1	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CLIP1	6249	genome.wustl.edu	36	12	121387219	121387219	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121387219	121387219	C	A	SNP	CLIP1	NM_002956	human	genbank	54_36p	-1	validated	silent	c.2448	p.G816	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
ZCCHC8	55596	genome.wustl.edu	36	12	121532444	121532444	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121532444	121532444	C	G	SNP	ZCCHC8	NM_017612	human	genbank	54_36p	-1	validated	splice_site	c.875+1	e9+1	1	-	-	-	no_errors
KNTC1	9735	genome.wustl.edu	36	12	121618772	121618772	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121618772	121618772	G	T	SNP	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	missense	c.1616	p.W539L	1	NULL	"HMMPfam_Rod_C,PatternScan_BZIP_BASIC"	-	no_errors
ERC1	23085	genome.wustl.edu	36	12	1216323	1216323	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1216323	1216323	C	T	SNP	ERC1	NM_178040	human	genbank	54_36p	1	reviewed	nonsense	c.2479	p.Q827*	1	HMMPfam_Cast	"HMMPfam_Cast,superfamily_Prefoldin,HMMPfam_RBD-FIP"	-	no_errors
LRP6	4040	genome.wustl.edu	36	12	12165331	12165331	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	12165331	12165331	G	T	SNP	LRP6	NM_002336	human	genbank	54_36p	-1	validated	missense	c.4838	p.S1613Y	1	NULL	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
GPR81	27198	genome.wustl.edu	36	12	121780477	121780477	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121780477	121780477	G	A	SNP	GPR81	NM_032554	human	genbank	54_36p	-1	validated	silent	c.363	p.H121	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CCDC62	84660	genome.wustl.edu	36	12	121856670	121856670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	121856670	121856670	G	A	SNP	CCDC62	NM_201435	human	genbank	54_36p	1	validated	missense	c.1726	p.D576N	0	NULL	NULL	-	no_errors
PITPNM2	57605	genome.wustl.edu	36	12	122037918	122037918	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122037918	122037918	C	T	SNP	PITPNM2	NM_020845	human	genbank	54_36p	-1	validated	silent	c.3276	p.T1092	0.01	NULL	"HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122838342	122838342	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122838342	122838342	C	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	missense	c.731	p.A244D	1	HMMPfam_DHC_N1	HMMPfam_DHC_N1	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122855451	122855451	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122855451	122855451	C	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	missense	c.1998	p.H666Q	0.98	NULL	HMMPfam_DHC_N1	-	no_errors
DNAH10	196385	genome.wustl.edu	36	12	122863771	122863771	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	122863771	122863771	T	A	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	silent	c.2352	p.P784	0.99	NULL	HMMPfam_DHC_N1	-	no_errors
UBC	7316	genome.wustl.edu	36	12	123964117	123964117	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	123964117	123964117	C	T	SNP	UBC	NM_021009	human	genbank	54_36p	-1	validated	missense	c.154	p.D52N	1	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	-	no_errors
BRI3BP	140707	genome.wustl.edu	36	12	124063063	124063063	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124063063	124063063	C	A	SNP	BRI3BP	NM_080626	human	genbank	54_36p	1	validated	missense	c.244	p.L82M	0.75	NULL	NULL	-	no_errors
AACS	65985	genome.wustl.edu	36	12	124175451	124175451	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124175451	124175451	C	T	SNP	AACS	NM_023928	human	genbank	54_36p	1	validated	missense	c.1237	p.P413S	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124634364	124634364	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124634364	124634364	G	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	missense	c.1293	p.L431F	1	NULL	NULL	-	no_errors
TMEM132B	114795	genome.wustl.edu	36	12	124701392	124701392	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	124701392	124701392	C	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	silent	c.1839	p.I613	0.39	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128124816	128124816	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128124816	128124816	C	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	nonsense	c.2857	p.E953*	0.92	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128132509	128132509	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128132509	128132509	C	T	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.1671	p.E557	0.99	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128750475	128750475	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128750475	128750475	G	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.801	p.I267	0.99	NULL	NULL	-	no_errors
TMEM132D	121256	genome.wustl.edu	36	12	128750620	128750620	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	128750620	128750620	G	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	missense	c.656	p.P219L	0	NULL	NULL	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130016964	130016964	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130016964	130016964	T	A	SNP	GPR133	NM_198827	human	genbank	54_36p	1	validated	missense	c.107	p.F36Y	1	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130053283	130053283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130053283	130053283	C	T	SNP	GPR133	ENST00000376682	human	ensembl	54_36p	1	known	missense	c.32	p.P11L	0	NULL	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR133	283383	genome.wustl.edu	36	12	130054769	130054769	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130054769	130054769	C	A	SNP	GPR133	NM_198827	human	genbank	54_36p	1	validated	silent	c.1230	p.I410	0.01	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
SFSWAP	6433	genome.wustl.edu	36	12	130849938	130849938	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	130849938	130849938	C	T	SNP	SFRS8	NM_004592	human	genbank	54_36p	1	reviewed	silent	c.2808	p.V936	0.97	NULL	"HMMPfam_DRY_EERY,superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp"	-	no_errors
POLE	5426	genome.wustl.edu	36	12	131711577	131711577	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	131711577	131711577	G	T	SNP	POLE	NM_006231	human	genbank	54_36p	-1	validated	missense	c.6734	p.T2245N	1	NULL	"superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744"	-	no_errors
GOLGA3	2802	genome.wustl.edu	36	12	131883237	131883237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	131883237	131883237	C	G	SNP	GOLGA3	NM_005895	human	genbank	54_36p	-1	reviewed	missense	c.2061	p.M687I	1	NULL	"superfamily_Spectrin repeat,superfamily_Prefoldin"	-	no_errors
GRIN2B	2904	genome.wustl.edu	36	12	13659413	13659413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	13659413	13659413	C	T	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	missense	c.1556	p.R519Q	1	"superfamily_SSF53850,HMMSmart_PBPe"	"superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C"	-	no_errors
ERC1	23085	genome.wustl.edu	36	12	1424012	1424012	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1424012	1424012	T	G	SNP	ERC1	NM_178040	human	genbank	54_36p	1	reviewed	silent	c.3048	p.L1016	1	NULL	"superfamily_Prefoldin,HMMPfam_RBD-FIP,HMMPfam_Cast"	-	no_errors
HIST4H4	121504	genome.wustl.edu	36	12	14815167	14815167	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	14815167	14815167	C	T	SNP	HIST4H4	NM_175054	human	genbank	54_36p	-1	reviewed	missense	c.119	p.R40Q	1	"superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
WBP11	51729	genome.wustl.edu	36	12	14838057	14838057	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	14838057	14838057	T	C	SNP	WBP11	NM_016312	human	genbank	54_36p	-1	reviewed	missense	c.788	p.D263G	1	NULL	HMMPfam_Wbp11	-	no_errors
MGP	4256	genome.wustl.edu	36	12	14926380	14926380	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	14926380	14926380	G	A	SNP	MGP	NM_000900	human	genbank	54_36p	-1	validated	missense	c.272	p.A91V	1	"HMMSmart_GLA,HMMPfam_Gla,superfamily_VitK_dep_GLA,PatternScan_GLA_1"	"HMMSmart_GLA,HMMPfam_Gla,superfamily_VitK_dep_GLA,PatternScan_GLA_1"	-	no_errors
PTPRO	5800	genome.wustl.edu	36	12	15545856	15545856	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	15545856	15545856	G	A	SNP	PTPRO	NM_030667	human	genbank	54_36p	1	reviewed	missense	c.697	p.V233I	0.98	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRO	5800	genome.wustl.edu	36	12	15552818	15552818	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	15552818	15552818	C	T	SNP	PTPRO	NM_030667	human	genbank	54_36p	1	reviewed	silent	c.1314	p.H438	0.97	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
FBXL14	144699	genome.wustl.edu	36	12	1572492	1572492	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1572492	1572492	C	T	SNP	FBXL14	NM_152441	human	genbank	54_36p	-1	validated	silent	c.1002	p.T334	1	superfamily_SSF52047	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047"	-	no_errors
EPS8	2059	genome.wustl.edu	36	12	15727127	15727127	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	15727127	15727127	G	T	SNP	EPS8	NM_004447	human	genbank	54_36p	-1	reviewed	missense	c.26	p.P9H	1	NULL	"HMMSmart_PTB,superfamily_SSF50729,HMMPfam_PTB,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
SUPT16HP	400011	genome.wustl.edu	36	12	16444344	16444344	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	16444344	16444344	G	A	SNP	LOC400011	XR_016968	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SLC6A12	6539	genome.wustl.edu	36	12	184122	184122	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	184122	184122	G	T	SNP	SLC6A12	NM_003044	human	genbank	54_36p	-1	validated	missense	c.218	p.A73D	1	PatternScan_NA_NEUROTRAN_SYMP_1	"PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
CACNA2D4	93589	genome.wustl.edu	36	12	1866479	1866479	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	1866479	1866479	C	A	SNP	CACNA2D4	NM_172364	human	genbank	54_36p	-1	reviewed	missense	c.799	p.D267Y	1	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1"	-	no_errors
PLCZ1	89869	genome.wustl.edu	36	12	18727493	18727493	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	18727493	18727493	C	A	SNP	PLCZ1	NM_033123	human	genbank	54_36p	-1	provisional	missense	c.1774	p.G592C	0.1	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
LOC643668	643668	genome.wustl.edu	36	12	18737273	18737273	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	18737273	18737273	G	C	SNP	LOC643668	XR_016986	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC643668	643668	genome.wustl.edu	36	12	18738165	18738165	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	18738165	18738165	G	A	SNP	LOC643668	XR_016986	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PLEKHA5	54477	genome.wustl.edu	36	12	19410169	19410169	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	19410169	19410169	C	G	SNP	PLEKHA5	NM_019012	human	genbank	54_36p	1	validated	missense	c.3115	p.Q1039E	0.11	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PLEKHA5	54477	genome.wustl.edu	36	12	19414000	19414000	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	19414000	19414000	G	C	SNP	PLEKHA5	NM_019012	human	genbank	54_36p	1	validated	splice_site	c.3351+1	e25+1	1	-	-	-	no_errors
PDE3A	5139	genome.wustl.edu	36	12	20694658	20694658	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20694658	20694658	G	T	SNP	PDE3A	NM_000921	human	genbank	54_36p	1	validated	missense	c.2782	p.V928F	0.07	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I"	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20777247	20777247	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20777247	20777247	C	G	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1324	p.L442V	0.78	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20781364	20781364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20781364	20781364	G	A	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1439	p.C480Y	1	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
SLCO1C1	53919	genome.wustl.edu	36	12	20781415	20781416	+	Missense_Mutation	DNP	CA	CA	AG	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	CA	CA	CA	AG	CA	CA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	20781415	20781416	CA	AG	DNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1490_1491	p.T497K	0.999:0.845	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2094813	2094813	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2094813	2094813	C	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.212	p.A71E	0.96	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
SLCO1B1	10599	genome.wustl.edu	36	12	21185846	21185846	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21185846	21185846	G	T	SNP	SLCO1B1	NM_006446	human	genbank	54_36p	1	reviewed	missense	c.71	p.C24F	0.63	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
SLCO1B1	10599	genome.wustl.edu	36	12	21221096	21221096	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21221096	21221096	A	T	SNP	SLCO1B1	NM_006446	human	genbank	54_36p	1	reviewed	missense	c.479	p.K160I	0.63	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	"HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors"	-	no_errors
SLCO1B1	10599	genome.wustl.edu	36	12	21250089	21250089	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21250089	21250089	A	T	SNP	SLCO1B1	NM_006446	human	genbank	54_36p	1	reviewed	missense	c.1352	p.H451L	0.01	"HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors"	"HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors"	-	no_errors
SLCO1A2	6579	genome.wustl.edu	36	12	21344736	21344736	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21344736	21344736	C	T	SNP	SLCO1A2	NM_021094	human	genbank	54_36p	-1	reviewed	nonsense	c.723	p.W241*	1	"superfamily_MFS general substrate transporter,HMMPfam_OATP"	"superfamily_MFS general substrate transporter,HMMPfam_OATP,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
SLCO1A2	6579	genome.wustl.edu	36	12	21363579	21363579	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21363579	21363579	C	T	SNP	SLCO1A2	ENST00000390670	human	ensembl	54_36p	-1	known	silent	c.48	p.S16	0	superfamily_MFS_gen_substrate_transporter	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
PYROXD1	79912	genome.wustl.edu	36	12	21507026	21507026	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21507026	21507026	G	C	SNP	PYROXD1	NM_024854	human	genbank	54_36p	1	validated	missense	c.1079	p.C360S	1	"HMMPfam_Pyr_redox_2,superfamily_SSF51905"	"HMMPfam_Pyr_redox_2,superfamily_SSF51905"	-	no_errors
LDHB	3945	genome.wustl.edu	36	12	21688176	21688176	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21688176	21688176	C	G	SNP	LDHB	NM_002300	human	genbank	54_36p	-1	validated	missense	c.381	p.K127N	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Ldh_1_N"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Ldh_1_N,superfamily_LDH C-terminal domain-like,HMMPfam_Ldh_1_C,PatternScan_L_LDH"	-	no_errors
KCNJ8	3764	genome.wustl.edu	36	12	21810804	21810804	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	21810804	21810804	A	G	SNP	KCNJ8	NM_004982	human	genbank	54_36p	-1	reviewed	missense	c.395	p.L132P	1	"HMMPfam_IRK,superfamily_SSF81324"	"HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set"	-	no_errors
ABCC9	10060	genome.wustl.edu	36	12	21845258	21845258	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	21845258	21845258	C	T	SNP	ABCC9	NM_020297	human	genbank	54_36p	-1	reviewed	missense	c.4637	p.R1546H	1	superfamily_SSF52540	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
CMAS	55907	genome.wustl.edu	36	12	22105655	22105655	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	22105655	22105655	T	G	SNP	CMAS	NM_018686	human	genbank	54_36p	1	reviewed	splice_site	c.960+2	e6+2	1	-	-	-	no_errors
KIAA0528	9847	genome.wustl.edu	36	12	22513988	22513988	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	22513988	22513988	C	G	SNP	KIAA0528	NM_014802	human	genbank	54_36p	-1	predicted	missense	c.2455	p.D819H	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
SOX5	6660	genome.wustl.edu	36	12	23578429	23578429	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	23578429	23578429	T	A	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.2283	p.Q761H	1	NULL	"PatternScan_TONB_DEPENDENT_REC_1,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
SOX5	6660	genome.wustl.edu	36	12	23785168	23785168	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	23785168	23785168	T	A	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.641	p.E214V	1	NULL	"HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_TONB_DEPENDENT_REC_1"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2483928	2483928	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2483928	2483928	C	A	SNP	CACNA1C	ENST00000399634	human	ensembl	54_36p	1	known	silent	c.1179	p.S393	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
KRAS	3845	genome.wustl.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	25289551	25289551	C	A	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12V	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
IFLTD1	160492	genome.wustl.edu	36	12	25570406	25570406	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	25570406	25570406	G	A	SNP	IFLTD1	NM_152590	human	genbank	54_36p	-1	validated	missense	c.629	p.A210V	0.4	"superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	"superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26455589	26455589	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	26455589	26455589	T	A	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.7330	p.T2444S	0.6	HMMPfam_Ion_trans	"HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26463359	26463359	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26463359	26463359	T	G	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.7000	p.T2334P	1	HMMPfam_Ion_trans	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2658874	2658874	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2658874	2658874	G	T	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.5095	p.A1699S	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1C	775	genome.wustl.edu	36	12	2659073	2659073	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	2659073	2659073	C	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.5294	p.A1765D	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26646683	26646683	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26646683	26646683	G	T	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.3565	p.L1189I	1	HMMPfam_RYDR_ITPR	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
ITPR2	3709	genome.wustl.edu	36	12	26876940	26876940	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26876940	26876940	G	C	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.42	p.I14M	1	HMMPfam_Ins145_P3_rec	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
C12orf11	55726	genome.wustl.edu	36	12	26980898	26980898	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	26980898	26980898	T	C	SNP	C12orf11	NM_018164	human	genbank	54_36p	-1	validated	missense	c.106	p.N36D	1	HMMPfam_DUF2151	HMMPfam_DUF2151	-	no_errors
STK38L	23012	genome.wustl.edu	36	12	27353314	27353314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	27353314	27353314	G	C	SNP	STK38L	NM_015000	human	genbank	54_36p	1	validated	missense	c.310	p.V104L	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
ARNTL2	56938	genome.wustl.edu	36	12	27444781	27444781	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	27444781	27444781	T	C	SNP	ARNTL2	NM_020183	human	genbank	54_36p	1	provisional	missense	c.967	p.W323R	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3"	-	no_errors
REP15	387849	genome.wustl.edu	36	12	27740817	27740817	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	27740817	27740817	G	A	SNP	REP15	NM_001029874	human	genbank	54_36p	1	provisional	missense	c.55	p.V19I	0	NULL	NULL	-	no_errors
OVCH1	341350	genome.wustl.edu	36	12	29483541	29483541	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	29483541	29483541	C	A	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.3251	p.W1084L	0	NULL	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
OVCH1	341350	genome.wustl.edu	36	12	29488472	29488472	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	29488472	29488472	C	T	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.2890	p.D964N	0.01	NULL	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
OVCH1	341350	genome.wustl.edu	36	12	29539634	29539634	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	29539634	29539634	A	G	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.305	p.V102A	0.58	"HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases"	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
TSPAN9	10867	genome.wustl.edu	36	12	3257869	3257869	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3257869	3257869	G	T	SNP	TSPAN9	NM_006675	human	genbank	54_36p	1	reviewed	nonsense	c.85	p.G29*	1	HMMPfam_Tetraspannin	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
FGD4	121512	genome.wustl.edu	36	12	32626657	32626657	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	32626657	32626657	C	T	SNP	FGD4	NM_139241	human	genbank	54_36p	1	reviewed	missense	c.589	p.H197Y	0	superfamily_DBL homology domain (DH-domain)	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
DNM1L	10059	genome.wustl.edu	36	12	32775673	32775673	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	32775673	32775673	G	T	SNP	DNM1L	NM_012062	human	genbank	54_36p	1	reviewed	missense	c.1317	p.M439I	1	HMMPfam_Dynamin_M	"HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_SM00302"	-	no_errors
SYT10	341359	genome.wustl.edu	36	12	33470699	33470699	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	33470699	33470699	T	C	SNP	SYT10	NM_198992	human	genbank	54_36p	-1	provisional	splice_site	c.152-2	e2-2	1	-	-	-	no_errors
PRMT8	56341	genome.wustl.edu	36	12	3556325	3556325	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3556325	3556325	T	G	SNP	PRMT8	NM_019854	human	genbank	54_36p	1	validated	missense	c.740	p.M247R	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_HSP70_2"	-	no_errors
EFCAB4B	84766	genome.wustl.edu	36	12	3639045	3639045	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3639045	3639045	G	T	SNP	EFCAB4B	NM_032680	human	genbank	54_36p	-1	validated	silent	c.708	p.L236	0.96	NULL	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
PARP11	57097	genome.wustl.edu	36	12	3791822	3791822	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	3791822	3791822	T	C	SNP	PARP11	NM_020367	human	genbank	54_36p	-1	validated	missense	c.724	p.K242E	1	"superfamily_ADP-ribosylation,HMMPfam_PARP"	"HMMPfam_WWE,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	37981704	37981704	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	37981704	37981704	C	A	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	silent	c.4737	p.V1579	0.19	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40 repeat-like,superfamily_Prefoldin,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	37989745	37989745	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	37989745	37989745	C	T	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	missense	c.4148	p.C1383Y	0.95	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	"HMMSmart_SM00320,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_Prefoldin,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF21A	55605	genome.wustl.edu	36	12	38012445	38012445	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38012445	38012445	T	C	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	silent	c.2850	p.K950	0.89	superfamily_WD40 repeat-like	"HMMSmart_SM00320,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_Prefoldin,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
C12orf40	283461	genome.wustl.edu	36	12	38364950	38364950	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38364950	38364950	C	T	SNP	C12orf40	NM_001031748	human	genbank	54_36p	1	validated	missense	c.1301	p.S434L	0.25	NULL	NULL	-	no_errors
SLC2A13	114134	genome.wustl.edu	36	12	38510252	38510252	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38510252	38510252	G	T	SNP	SLC2A13	NM_052885	human	genbank	54_36p	-1	validated	nonsense	c.1308	p.Y436*	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	38974960	38974960	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38974960	38974960	T	C	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.2855	p.I952T	0.66	superfamily_SSF52058	"superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2"	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	38985923	38985923	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	38985923	38985923	T	A	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.3847	p.S1283T	1	"HMMPfam_LRR_1,superfamily_SSF52058"	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
LRRK2	120892	genome.wustl.edu	36	12	39031692	39031692	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	39031692	39031692	G	T	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.6466	p.V2156F	1	superfamily_WD40_like	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
CNTN1	1272	genome.wustl.edu	36	12	39705370	39705370	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	39705370	39705370	C	A	SNP	CNTN1	NM_001843	human	genbank	54_36p	1	reviewed	missense	c.2675	p.P892Q	1	"superfamily_Fibronectin type III,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,PatternScan_N6_MTASE,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
PDZRN4	29951	genome.wustl.edu	36	12	40252756	40252756	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	40252756	40252756	G	T	SNP	PDZRN4	NM_013377	human	genbank	54_36p	1	validated	missense	c.1134	p.K378N	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
PRICKLE1	144165	genome.wustl.edu	36	12	41144824	41144824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	41144824	41144824	G	C	SNP	PRICKLE1	NM_153026	human	genbank	54_36p	-1	validated	missense	c.1279	p.L427V	1	NULL	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42103950	42103950	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42103950	42103950	C	G	SNP	ADAMTS20	ENST00000389417	human	ensembl	54_36p	-1	known	missense	c.4332	p.L1444F	0	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42107469	42107469	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42107469	42107469	G	C	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.4016	p.A1339G	1	"superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42112378	42112378	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42112378	42112378	C	T	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.3092	p.S1031N	1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42132705	42132705	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42132705	42132705	A	G	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	silent	c.1821	p.T607	1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS20	80070	genome.wustl.edu	36	12	42134112	42134112	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42134112	42134112	T	G	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.1625	p.H542P	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_GON,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
LOC401717	401717	genome.wustl.edu	36	12	42341041	42341041	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	42341041	42341041	C	T	SNP	LOC401717	XR_016218	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
FGF23	8074	genome.wustl.edu	36	12	4349937	4349937	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	4349937	4349937	C	T	SNP	FGF23	NM_020638	human	genbank	54_36p	-1	reviewed	missense	c.589	p.A197T	0.26	NULL	"PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF"	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44519445	44519445	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44519445	44519445	A	C	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.1397	p.K466T	1	NULL	"HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501,superfamily_Winged helix DNA-binding domain,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44530398	44530398	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44530398	44530398	C	T	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.2225	p.S742F	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
ARID2	196528	genome.wustl.edu	36	12	44531669	44531669	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44531669	44531669	G	C	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.3496	p.G1166R	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
SRSF2IP	9169	genome.wustl.edu	36	12	44607946	44607946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44607946	44607946	G	C	SNP	SFRS2IP	NM_004719	human	genbank	54_36p	-1	validated	missense	c.1805	p.T602R	0.03	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_RING_1"	-	no_errors
SLC38A1	81539	genome.wustl.edu	36	12	44881235	44881235	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	44881235	44881235	T	C	SNP	SLC38A1	NM_001077484	human	genbank	54_36p	-1	validated	missense	c.916	p.K306E	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
NDUFA9	4704	genome.wustl.edu	36	12	4633733	4633733	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	4633733	4633733	G	T	SNP	NDUFA9	NM_005002	human	genbank	54_36p	1	provisional	missense	c.64	p.A22S	0.07	NULL	"superfamily_NAD(P)-bd,HMMPfam_Epimerase"	-	no_errors
COL2A1	1280	genome.wustl.edu	36	12	46672951	46672951	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	46672951	46672951	G	A	SNP	COL2A1	NM_001844	human	genbank	54_36p	-1	reviewed	missense	c.1000	p.R334W	1	HMMPfam_Collagen	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
OR10AD1	121275	genome.wustl.edu	36	12	46882923	46882923	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	46882923	46882923	C	G	SNP	OR10AD1	NM_001004134	human	genbank	54_36p	-1	provisional	missense	c.420	p.K140N	0.63	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ANP32D	23519	genome.wustl.edu	36	12	47153049	47153051	+	In_Frame_Del	DEL	TAG	TAG	-	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	TAG	TAG	TAG	-	TAG	TAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47153049	47153051	TAG	-	DEL	ANP32D	NM_012404	human	genbank	54_36p	1	reviewed	in_frame_del	c.335_337	p.LENLE112in_frame_del*	1.000:1.000:1.000	superfamily_SSF52075	superfamily_SSF52075	"(deletion:cds_exon[47152715,47153110])"	no_errors
C12orf41	54934	genome.wustl.edu	36	12	47351980	47351980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47351980	47351980	G	A	SNP	C12orf41	NM_017822	human	genbank	54_36p	-1	validated	missense	c.578	p.A193V	1	NULL	NULL	-	no_errors
CCNT1	904	genome.wustl.edu	36	12	47374183	47374183	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47374183	47374183	C	-	DEL	CCNT1	NM_001240	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1081	p.D361fs	0.99	NULL	"PatternScan_CYCLINS,superfamily_Cyclin_like,HMMPfam_Cyclin_N,HMMSmart_CYCLIN"	"(deletion:cds_exon[47373083,47374486])"	no_errors
DDX23	9416	genome.wustl.edu	36	12	47513508	47513508	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	47513508	47513508	C	A	SNP	DDX23	NM_004818	human	genbank	54_36p	-1	reviewed	missense	c.1622	p.S541I	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
TROAP	10024	genome.wustl.edu	36	12	48010613	48010613	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48010613	48010613	A	G	SNP	TROAP	NM_005480	human	genbank	54_36p	1	validated	missense	c.1718	p.E573G	0.02	NULL	NULL	-	no_errors
FAIM2	23017	genome.wustl.edu	36	12	48569235	48569235	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48569235	48569235	G	A	SNP	FAIM2	NM_012306	human	genbank	54_36p	-1	validated	silent	c.669	p.C223	1	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
AQP2	100131403	genome.wustl.edu	36	12	48631219	48631219	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48631219	48631219	C	T	SNP	LOC100131403	XM_001718330	human	genbank	54_36p	-1	model	missense	c.511	p.A171T	0.86	NULL	NULL	-	no_errors
SMARCD1	6602	genome.wustl.edu	36	12	48778839	48778839	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48778839	48778839	G	A	SNP	SMARCD1	NM_003076	human	genbank	54_36p	1	reviewed	missense	c.1468	p.A490T	1	NULL	"superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151"	-	no_errors
LIMA1	51474	genome.wustl.edu	36	12	48928777	48928777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	48928777	48928777	G	A	SNP	LIMA1	NM_016357	human	genbank	54_36p	-1	validated	missense	c.25	p.R9W	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
LARP4	113251	genome.wustl.edu	36	12	49147018	49147018	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	49147018	49147018	C	T	SNP	LARP4	NM_199188	human	genbank	54_36p	1	validated	missense	c.1411	p.P471S	0.26	NULL	"superfamily_SSF46785,HMMSmart_LA,HMMPfam_La,HMMSmart_RRM"	-	no_errors
ATF1	466	genome.wustl.edu	36	12	49489522	49489522	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	49489522	49489522	T	A	SNP	ATF1	NM_005171	human	genbank	54_36p	1	validated	missense	c.211	p.L71I	1	HMMPfam_pKID	"HMMPfam_pKID,HMMSmart_BRLZ,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC"	-	no_errors
BIN2	51411	genome.wustl.edu	36	12	49982775	49982775	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	49982775	49982775	C	T	SNP	BIN2	NM_016293	human	genbank	54_36p	-1	validated	missense	c.274	p.E92K	1	"HMMSmart_SM00721,HMMPfam_BAR"	"HMMSmart_SM00721,HMMPfam_BAR"	-	no_errors
KCNA5	3741	genome.wustl.edu	36	12	5024132	5024132	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5024132	5024132	G	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	1	reviewed	silent	c.558	p.R186	0.98	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KCNA5	3741	genome.wustl.edu	36	12	5024759	5024759	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5024759	5024759	C	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	1	reviewed	silent	c.1185	p.S395	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN8A	6334	genome.wustl.edu	36	12	50386588	50386588	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50386588	50386588	A	G	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.1457	p.K486R	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_ODR_DC_2_1,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN8A	6334	genome.wustl.edu	36	12	50401778	50401778	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50401778	50401778	G	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.1817	p.R606Q	1	NULL	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN8A	6334	genome.wustl.edu	36	12	50431564	50431564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50431564	50431564	G	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.2290	p.V764I	1	superfamily_Voltage-gated potassium channels	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
ANKRD33	341405	genome.wustl.edu	36	12	50570999	50570999	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	50570999	50570999	G	A	SNP	ANKRD33	NM_182608	human	genbank	54_36p	1	validated	silent	c.1002	p.S334	0	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
KRT86	3892	genome.wustl.edu	36	12	50985326	50985326	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	50985326	50985326	C	A	SNP	KRT86	NM_002284	human	genbank	54_36p	1	reviewed	silent	c.771	p.T257	0.99	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6B	3854	genome.wustl.edu	36	12	51131903	51131903	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51131903	51131903	C	G	SNP	KRT6B	NM_005555	human	genbank	54_36p	-1	reviewed	missense	c.227	p.S76T	0.99	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6A	3853	genome.wustl.edu	36	12	51173148	51173148	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51173148	51173148	G	C	SNP	KRT6A	NM_005554	human	genbank	54_36p	-1	reviewed	missense	c.92	p.S31C	0.15	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT71	112802	genome.wustl.edu	36	12	51228750	51228763	+	Splice_Site	DEL	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	-	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	-	ACGGCTTCAAAGAG	ACGGCTTCAAAGAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51228750	51228763	ACGGCTTCAAAGAG	-	DEL	KRT71	NM_033448	human	genbank	54_36p	-1	provisional	splice_site_del	c.813+13_813+1	e5-1	0.983:0.945:0.004:0.005:0.095:0.245:0.879:0.900:0.854:0.843:0.978:0.982:0.978:0.569	-	-	"(deletion:intron[51228368,51228751], cds_exon[51228752,51228847])"	no_errors
KRT74	121391	genome.wustl.edu	36	12	51248285	51248285	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51248285	51248285	G	A	SNP	KRT74	NM_175053	human	genbank	54_36p	-1	validated	silent	c.1290	p.S430	0.84	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT72	140807	genome.wustl.edu	36	12	51267752	51267752	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51267752	51267752	C	T	SNP	KRT72	NM_080747	human	genbank	54_36p	-1	provisional	missense	c.1240	p.V414M	0.97	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT73	319101	genome.wustl.edu	36	12	51293740	51293740	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51293740	51293740	T	G	SNP	KRT73	NM_175068	human	genbank	54_36p	-1	provisional	missense	c.983	p.K328T	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT2	3849	genome.wustl.edu	36	12	51325292	51325292	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51325292	51325292	G	A	SNP	KRT2	NM_000423	human	genbank	54_36p	-1	reviewed	silent	c.1698	p.G566	0.99	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT2	3849	genome.wustl.edu	36	12	51327830	51327830	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51327830	51327830	T	C	SNP	KRT2	NM_000423	human	genbank	54_36p	-1	reviewed	missense	c.1199	p.N400S	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT1	3848	genome.wustl.edu	36	12	51358657	51358657	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51358657	51358657	C	T	SNP	KRT1	NM_006121	human	genbank	54_36p	-1	reviewed	missense	c.742	p.D248N	0.52	HMMPfam_Filament	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
LOC400036	400036	genome.wustl.edu	36	12	51411523	51411523	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51411523	51411523	G	A	SNP	LOC400036	XR_042304	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KRT4	3851	genome.wustl.edu	36	12	51487226	51487226	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51487226	51487226	C	A	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	missense	c.1679	p.S560I	0.95	NULL	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
KRT79	338785	genome.wustl.edu	36	12	51504354	51504354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	51504354	51504354	G	T	SNP	KRT79	NM_175834	human	genbank	54_36p	-1	validated	missense	c.915	p.N305K	1	"HMMPfam_Filament,superfamily_Prefoldin"	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
ATF7	11016	genome.wustl.edu	36	12	52217576	52217576	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	52217576	52217576	G	C	SNP	ATF7	NM_006856	human	genbank	54_36p	-1	validated	missense	c.292	p.L98V	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_ATPASE_ALPHA_BETA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC"	-	no_errors
HOXC4	3221	genome.wustl.edu	36	12	52734193	52734193	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	52734193	52734193	G	C	SNP	HOXC4	NM_014620	human	genbank	54_36p	1	reviewed	missense	c.220	p.G74R	1	NULL	"PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HNRNPA1	3178	genome.wustl.edu	36	12	52961503	52961503	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	52961503	52961503	G	A	SNP	HNRNPA1	NM_031157	human	genbank	54_36p	1	reviewed	missense	c.82	p.E28K	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ITGA5	3678	genome.wustl.edu	36	12	53081716	53081716	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53081716	53081716	G	C	SNP	ITGA5	NM_002205	human	genbank	54_36p	-1	reviewed	missense	c.2307	p.S769R	1	"HMMPfam_Integrin_alpha2,superfamily_SSF69179"	"superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
NCKAP1L	3071	genome.wustl.edu	36	12	53216270	53216270	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53216270	53216270	C	G	SNP	NCKAP1L	NM_005337	human	genbank	54_36p	1	reviewed	missense	c.3047	p.S1016C	0.34	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
KIAA0748	9840	genome.wustl.edu	36	12	53641242	53641242	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53641242	53641242	G	T	SNP	KIAA0748	NM_001098815	human	genbank	54_36p	-1	validated	missense	c.1544	p.T515N	0	NULL	NULL	-	no_errors
NEUROD4	58158	genome.wustl.edu	36	12	53707449	53707449	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53707449	53707449	G	T	SNP	NEUROD4	NM_021191	human	genbank	54_36p	1	validated	missense	c.959	p.G320V	0.05	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
OR10A7	121364	genome.wustl.edu	36	12	53901770	53901770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53901770	53901770	C	T	SNP	OR10A7	NM_001005280	human	genbank	54_36p	1	provisional	missense	c.695	p.T232I	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10A7	121364	genome.wustl.edu	36	12	53901945	53901945	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	53901945	53901945	C	T	SNP	OR10A7	NM_001005280	human	genbank	54_36p	1	provisional	silent	c.870	p.Y290	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR6C75	390323	genome.wustl.edu	36	12	54045559	54045559	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54045559	54045559	T	A	SNP	OR6C75	NM_001005497	human	genbank	54_36p	1	provisional	missense	c.398	p.I133N	0.79	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ITGA7	3679	genome.wustl.edu	36	12	54373249	54373249	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54373249	54373249	G	A	SNP	ITGA7	NM_002206	human	genbank	54_36p	-1	reviewed	silent	c.2655	p.G885	0.99	"HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
RDH5	5959	genome.wustl.edu	36	12	54404013	54404013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54404013	54404013	G	A	SNP	RDH5	NM_002905	human	genbank	54_36p	1	reviewed	missense	c.646	p.E216K	1	superfamily_NAD(P)-bd	"PatternScan_ADH_SHORT,superfamily_NAD(P)-bd,HMMPfam_adh_short"	-	no_errors
DNAJC14	85406	genome.wustl.edu	36	12	54508469	54508469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54508469	54508469	G	A	SNP	DNAJC14	NM_032364	human	genbank	54_36p	-1	validated	missense	c.241	p.P81S	1	NULL	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ"	-	no_errors
MMP19	4327	genome.wustl.edu	36	12	54517349	54517351	+	In_Frame_Del	DEL	AAC	AAC	-	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	AAC	AAC	AAC	-	AAC	AAC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54517349	54517351	AAC	-	DEL	MMP19	NM_002429	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1265_1263	p.L421in_frame_del	1.000:1.000:0.983	"superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	"superfamily_PGBD-like,HMMPfam_PG_binding_1,HMMSmart_SM00235,HMMPfam_Peptidase_M10,superfamily_Metalloproteases (zincins) catalytic domain,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	"(deletion:cds_exon[54517087,54517425])"	no_errors
DGKA	1606	genome.wustl.edu	36	12	54620413	54620413	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54620413	54620413	G	T	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	missense	c.847	p.D283Y	1	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
DGKA	1606	genome.wustl.edu	36	12	54620698	54620698	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54620698	54620698	G	A	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	silent	c.942	p.A314	0.21	"HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain"	"HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain"	-	no_errors
DGKA	1606	genome.wustl.edu	36	12	54633437	54633437	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54633437	54633437	A	T	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	missense	c.2100	p.E700D	1	"HMMPfam_DAGK_acc,HMMSmart_SM00045"	"HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain"	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54703778	54703778	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54703778	54703778	C	A	SNP	IKZF4	NM_022465	human	genbank	54_36p	1	validated	missense	c.144	p.D48E	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
IKZF4	64375	genome.wustl.edu	36	12	54714800	54714800	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54714800	54714800	C	G	SNP	IKZF4	NM_022465	human	genbank	54_36p	1	validated	missense	c.1176	p.I392M	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54773433	54773433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54773433	54773433	G	A	SNP	ERBB3	NM_001982	human	genbank	54_36p	1	reviewed	missense	c.1312	p.V438I	0.82	"superfamily_L domain-like,HMMPfam_Recep_L_domain"	"superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54781659	54781659	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54781659	54781659	T	A	SNP	ERBB3	NM_001982	human	genbank	54_36p	1	reviewed	missense	c.3582	p.D1194E	1	NULL	"HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),superfamily_L domain-like"	-	no_errors
ESYT1	23344	genome.wustl.edu	36	12	54814394	54814394	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54814394	54814394	C	G	SNP	FAM62A	NM_015292	human	genbank	54_36p	1	provisional	missense	c.1547	p.A516G	0.84	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
STAT2	6773	genome.wustl.edu	36	12	55031427	55031427	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55031427	55031427	A	G	SNP	STAT2	NM_005419	human	genbank	54_36p	-1	reviewed	missense	c.857	p.V286A	0.04	"superfamily_STAT,HMMPfam_STAT_alpha"	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
TIMELESS	8914	genome.wustl.edu	36	12	55113600	55113600	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55113600	55113600	C	G	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	missense	c.355	p.A119P	1	HMMPfam_TIMELESS	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
GLS2	27165	genome.wustl.edu	36	12	55151826	55151826	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55151826	55151826	G	T	SNP	GLS2	NM_013267	human	genbank	54_36p	-1	reviewed	missense	c.1650	p.D550E	1	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
BAZ2A	11176	genome.wustl.edu	36	12	55295117	55295117	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55295117	55295117	T	C	SNP	BAZ2A	NM_013449	human	genbank	54_36p	-1	validated	silent	c.684	p.A228	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ATP5B	506	genome.wustl.edu	36	12	55325235	55325235	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55325235	55325235	C	G	SNP	ATP5B	NM_001686	human	genbank	54_36p	-1	reviewed	silent	c.297	p.V99	1	"superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase,HMMPfam_ATP-synt_ab_N"	###############################################################################################################################################################################################################################################################	-	no_errors
NACA	4666	genome.wustl.edu	36	12	55393239	55393239	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55393239	55393239	G	C	SNP	NACA	NM_005594	human	genbank	54_36p	-1	validated	missense	c.384	p.I128M	0.86	HMMPfam_NAC	"HMMPfam_NAC,HMMPfam_UBA"	-	no_errors
NAB2	4665	genome.wustl.edu	36	12	55771786	55771786	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55771786	55771786	G	A	SNP	NAB2	NM_005967	human	genbank	54_36p	1	reviewed	missense	c.695	p.G232D	1	HMMPfam_NCD2	"HMMPfam_NCD1,HMMPfam_NCD2"	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55857547	55857547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55857547	55857547	C	T	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.4267	p.R1423C	0.62	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b"	###############################################################################################################################################################################################################################################################	-	no_errors
R3HDM2	22864	genome.wustl.edu	36	12	55938093	55938093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	55938093	55938093	A	T	SNP	R3HDM2	NM_014925	human	genbank	54_36p	-1	validated	missense	c.1337	p.L446H	1	NULL	NULL	-	no_errors
GLI1	2735	genome.wustl.edu	36	12	56150686	56150686	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56150686	56150686	T	A	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.1896	p.N632K	0.78	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GLI1	2735	genome.wustl.edu	36	12	56150700	56150700	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56150700	56150700	G	A	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.1910	p.R637Q	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
MARS	4141	genome.wustl.edu	36	12	56194772	56194772	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56194772	56194772	C	T	SNP	MARS	NM_004990	human	genbank	54_36p	1	reviewed	missense	c.1970	p.A657V	1	"HMMPfam_tRNA-synt_1g,superfamily_tRNAsyn_1a_bind"	"superfamily_GST_C_like,HMMPfam_GST_C,superfamily_SSF52374,HMMPfam_tRNA-synt_1g,PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF57770,superfamily_tRNAsyn_1a_bind,superfamily_S15/NS1_bind,HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1"	-	no_errors
OS9	10956	genome.wustl.edu	36	12	56398264	56398265	+	Nonsense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	56398264	56398265	GA	TT	DNP	OS9	NM_006812	human	genbank	54_36p	1	reviewed	nonsense	c.1203_1204	p.EKE401D*	0.035:0.194	NULL	"HMMPfam_PRKCSH,superfamily_Mannose 6-phosphate receptor domain"	-	no_errors
OS9	10956	genome.wustl.edu	36	12	56400183	56400183	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	12	56400183	56400183	C	A	SNP	OS9	NM_006812	human	genbank	54_36p	1	reviewed	silent	c.1635	p.V545	1	NULL	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_PRKCSH"	-	no_errors
LRIG3	121227	genome.wustl.edu	36	12	57560777	57560777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	57560777	57560777	G	C	SNP	LRIG3	NM_153377	human	genbank	54_36p	-1	provisional	missense	c.1654	p.L552V	1	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
ANO2	57101	genome.wustl.edu	36	12	5786740	5786740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5786740	5786740	G	A	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	silent	c.939	p.D313	0.98	NULL	HMMPfam_DUF590	-	no_errors
ANO2	57101	genome.wustl.edu	36	12	5833485	5833485	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	5833485	5833485	T	G	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	missense	c.606	p.K202N	1	NULL	HMMPfam_DUF590	-	no_errors
VWF	7450	genome.wustl.edu	36	12	6037406	6037406	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6037406	6037406	G	A	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	silent	c.1599	p.D533	1	"HMMSmart_SM00216,HMMPfam_VWD"	###############################################################################################################################################################################################################################################################	-	no_errors
FAM19A2	338811	genome.wustl.edu	36	12	60435001	60435001	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	60435001	60435001	C	G	SNP	FAM19A2	NM_178539	human	genbank	54_36p	-1	reviewed	missense	c.178	p.E60Q	1	NULL	NULL	-	no_errors
PPM1H	57460	genome.wustl.edu	36	12	61374034	61374034	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	61374034	61374034	G	A	SNP	PPM1H	NM_020700	human	genbank	54_36p	-1	validated	silent	c.1086	p.T362	1	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332"	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C"	-	no_errors
SRGAP1	57522	genome.wustl.edu	36	12	62789063	62789063	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	62789063	62789063	A	G	SNP	SRGAP1	NM_020762	human	genbank	54_36p	1	validated	missense	c.1898	p.Y633C	1	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
TBK1	29110	genome.wustl.edu	36	12	63175583	63175583	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	63175583	63175583	A	T	SNP	TBK1	NM_013254	human	genbank	54_36p	1	reviewed	missense	c.1575	p.R525S	0.94	NULL	"HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
WIF1	11197	genome.wustl.edu	36	12	63731445	63731445	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	63731445	63731445	T	C	SNP	WIF1	NM_007191	human	genbank	54_36p	-1	reviewed	missense	c.1091	p.K364R	1	NULL	"HMMSmart_WIF,HMMPfam_WIF,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF"	-	no_errors
LOC729484	729484	genome.wustl.edu	36	12	64717396	64717396	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	64717396	64717396	A	T	SNP	LOC729484	XR_016010	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
TMBIM4	51643	genome.wustl.edu	36	12	64832396	64832396	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	64832396	64832396	G	A	SNP	TMBIM4	NM_016056	human	genbank	54_36p	-1	validated	silent	c.234	p.L78	0.93	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
GRIP1	23426	genome.wustl.edu	36	12	65143104	65143104	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	65143104	65143104	G	T	SNP	GRIP1	NM_021150	human	genbank	54_36p	-1	validated	silent	c.909	p.S303	1	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
NOP2	4839	genome.wustl.edu	36	12	6545552	6545552	+	Silent	SNP	A	C	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6545552	6545552	A	C	SNP	NOP2	NM_001033714	human	genbank	54_36p	-1	validated	silent	c.438	p.S146	0	NULL	"superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN,HMMPfam_P120R"	-	no_errors
CHD4	1108	genome.wustl.edu	36	12	6571444	6571444	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6571444	6571444	G	A	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.2989	p.L997F	1	HMMPfam_SNF2_N	###############################################################################################################################################################################################################################################################	-	no_errors
DYRK2	8445	genome.wustl.edu	36	12	66338143	66338143	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	66338143	66338143	G	T	SNP	DYRK2	NM_006482	human	genbank	54_36p	1	reviewed	missense	c.1189	p.A397S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MDM1	56890	genome.wustl.edu	36	12	67006998	67006998	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	67006998	67006998	A	C	SNP	MDM1	NM_017440	human	genbank	54_36p	-1	reviewed	silent	c.204	p.S68	1	NULL	NULL	-	no_errors
LOC387867	387867	genome.wustl.edu	36	12	67233142	67233142	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	67233142	67233142	G	T	SNP	LOC387867	XM_001726521	human	genbank	54_36p	-1	model	missense	c.788	p.P263H	1	NULL	"superfamily_Ribosomal protein S2,PatternScan_RIBOSOMAL_S2_1,HMMPfam_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_2"	-	pseudogene
RAB3IP	117177	genome.wustl.edu	36	12	68419907	68419907	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	68419907	68419907	A	C	SNP	RAB3IP	NM_175623	human	genbank	54_36p	1	validated	missense	c.14	p.K5T	0	NULL	HMMPfam_Sec2p	-	no_errors
LRRC23	10233	genome.wustl.edu	36	12	6893455	6893455	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6893455	6893455	C	T	SNP	LRRC23	NM_006992	human	genbank	54_36p	1	validated	missense	c.898	p.P300S	0	NULL	"superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
ATN1	1822	genome.wustl.edu	36	12	6918599	6918599	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6918599	6918599	C	T	SNP	ATN1	NM_001007026	human	genbank	54_36p	1	reviewed	missense	c.3212	p.A1071V	1	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
LPCAT3	10162	genome.wustl.edu	36	12	6957772	6957772	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	6957772	6957772	C	G	SNP	LPCAT3	NM_005768	human	genbank	54_36p	-1	validated	missense	c.1032	p.W344C	1	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
LGR5	8549	genome.wustl.edu	36	12	70264197	70264197	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	70264197	70264197	C	A	SNP	LGR5	NM_003667	human	genbank	54_36p	1	provisional	missense	c.2140	p.P714T	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
ZFC3H1	196441	genome.wustl.edu	36	12	70322513	70322513	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	70322513	70322513	T	C	SNP	ZFC3H1	NM_144982	human	genbank	54_36p	-1	validated	missense	c.1597	p.M533V	1	NULL	"HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase,HMMSmart_SM00386"	-	no_errors
THAP2	83591	genome.wustl.edu	36	12	70344567	70344567	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	70344567	70344567	A	G	SNP	THAP2	NM_031435	human	genbank	54_36p	1	provisional	missense	c.11	p.N4S	1	HMMPfam_THAP	"HMMPfam_THAP,HMMSmart_SM00692"	-	no_errors
ACSM4	341392	genome.wustl.edu	36	12	7348231	7348231	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7348231	7348231	A	T	SNP	ACSM4	NM_001080454	human	genbank	54_36p	1	inferred	missense	c.37	p.I13F	0.02	NULL	"superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ACSM4	341392	genome.wustl.edu	36	12	7354409	7354409	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7354409	7354409	C	T	SNP	ACSM4	NM_001080454	human	genbank	54_36p	1	inferred	silent	c.420	p.I140	0.86	"HMMPfam_AMP-binding,superfamily_SSF56801"	"HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801"	-	no_errors
CAPS2	84698	genome.wustl.edu	36	12	73962383	73962383	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	73962383	73962383	T	G	SNP	CAPS2	NM_032606	human	genbank	54_36p	-1	validated	missense	c.888	p.K296N	1	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh"	-	no_errors
GLIPR1	11010	genome.wustl.edu	36	12	74170514	74170514	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	74170514	74170514	G	T	SNP	GLIPR1	NM_006851	human	genbank	54_36p	1	reviewed	missense	c.482	p.G161V	0.02	"superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP"	"superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP,PatternScan_CRISP_1,PatternScan_CRISP_2"	-	no_errors
KRR1	11103	genome.wustl.edu	36	12	74184022	74184022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	74184022	74184022	G	A	SNP	KRR1	NM_007043	human	genbank	54_36p	-1	validated	missense	c.760	p.R254C	1	NULL	"HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1"	-	no_errors
NAP1L1	4673	genome.wustl.edu	36	12	74733342	74733342	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	74733342	74733342	T	G	SNP	NAP1L1	NM_004537	human	genbank	54_36p	-1	reviewed	missense	c.826	p.K276Q	1	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
CD163L1	283316	genome.wustl.edu	36	12	7477386	7477386	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7477386	7477386	C	T	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	missense	c.296	p.R99H	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CD163	9332	genome.wustl.edu	36	12	7542786	7542786	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7542786	7542786	T	A	SNP	CD163	NM_004244	human	genbank	54_36p	-1	validated	missense	c.723	p.Q241H	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CSRP2	1466	genome.wustl.edu	36	12	75776877	75776877	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	75776877	75776877	C	A	SNP	CSRP2	NM_001321	human	genbank	54_36p	-1	reviewed	missense	c.568	p.V190F	1	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
NAV3	89795	genome.wustl.edu	36	12	77040268	77040268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	77040268	77040268	G	A	SNP	NAV3	NM_014903	human	genbank	54_36p	1	validated	silent	c.4167	p.L1389	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
NAV3	89795	genome.wustl.edu	36	12	77106243	77106243	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	77106243	77106243	C	T	SNP	NAV3	NM_014903	human	genbank	54_36p	1	validated	missense	c.5809	p.R1937C	1	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PPP1R12A	4659	genome.wustl.edu	36	12	78740067	78740067	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	78740067	78740067	A	G	SNP	PPP1R12A	NM_002480	human	genbank	54_36p	-1	reviewed	missense	c.827	p.I276T	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
MYF5	4617	genome.wustl.edu	36	12	79636345	79636345	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	79636345	79636345	T	G	SNP	MYF5	NM_005593	human	genbank	54_36p	1	validated	splice_site	c.577+2	e2+2	1	-	-	-	no_errors
SLC2A3	6515	genome.wustl.edu	36	12	7977757	7977757	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	7977757	7977757	T	C	SNP	SLC2A3	NM_006931	human	genbank	54_36p	-1	validated	silent	c.24	p.P8	0	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
PPFIA2	8499	genome.wustl.edu	36	12	80271202	80271202	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	80271202	80271202	T	A	SNP	PPFIA2	NM_003625	human	genbank	54_36p	-1	reviewed	silent	c.1821	p.G607	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
FOXJ2	55810	genome.wustl.edu	36	12	8091762	8091762	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	8091762	8091762	G	A	SNP	FOXJ2	NM_018416	human	genbank	54_36p	1	validated	missense	c.835	p.G279R	1	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
TMTC2	160335	genome.wustl.edu	36	12	81605516	81605516	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	81605516	81605516	G	T	SNP	TMTC2	NM_152588	human	genbank	54_36p	1	provisional	missense	c.20	p.S7I	1	NULL	"HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
LRRIQ1	84125	genome.wustl.edu	36	12	83991003	83991003	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	83991003	83991003	G	C	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	missense	c.2883	p.W961C	0.01	superfamily_RNI-like	"superfamily_RNI-like,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LRRIQ1	84125	genome.wustl.edu	36	12	84042150	84042150	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	84042150	84042150	T	C	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	silent	c.3729	p.T1243	0	NULL	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RASSF9	9182	genome.wustl.edu	36	12	84723176	84723176	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	84723176	84723176	T	A	SNP	RASSF9	NM_005447	human	genbank	54_36p	-1	reviewed	missense	c.743	p.D248V	0	NULL	HMMSmart_SM00314	-	no_errors
MGAT4C	25834	genome.wustl.edu	36	12	84897722	84897722	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	84897722	84897722	T	C	SNP	MGAT4C	NM_013244	human	genbank	54_36p	-1	validated	missense	c.913	p.K305E	1	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
CLEC4D	338339	genome.wustl.edu	36	12	8564164	8564165	+	Missense_Mutation	DNP	TG	TG	GT	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	TG	TG	TG	GT	TG	TG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	8564164	8564165	TG	GT	DNP	CLEC4D	NM_080387	human	genbank	54_36p	1	reviewed	missense	c.460_461	p.W154V	0.853:0.839	"HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C"	"PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C"	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	859035	859035	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	859035	859035	C	A	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	silent	c.2409	p.G803	1	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	859235	859235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	12	859235	859235	C	T	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.2609	p.T870I	0.99	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	864283	864283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	864283	864283	C	T	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.4052	p.A1351V	0.07	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	86978787	86978787	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	86978787	86978787	A	G	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.6473	p.L2158S	0.61	NULL	NULL	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	86989297	86989297	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	86989297	86989297	A	G	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	silent	c.5916	p.D1972	1	NULL	NULL	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	87001786	87001786	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	87001786	87001786	C	A	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.4781	p.S1594I	1	NULL	NULL	-	no_errors
CEP290	80184	genome.wustl.edu	36	12	87029169	87029169	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	87029169	87029169	C	A	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.2308	p.A770S	0.99	NULL	NULL	-	no_errors
ATP2B1	490	genome.wustl.edu	36	12	88519315	88519315	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	88519315	88519315	T	C	SNP	ATP2B1	NM_001682	human	genbank	54_36p	-1	reviewed	silent	c.3087	p.K1029	1	"superfamily_SSF81665,HMMPfam_Cation_ATPase_C"	"HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C"	-	no_errors
DCN	1634	genome.wustl.edu	36	12	90082549	90082549	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	90082549	90082549	G	T	SNP	DCN	NM_001920	human	genbank	54_36p	-1	reviewed	silent	c.288	p.I96	1	"superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369"	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364"	-	no_errors
MRPL42	28977	genome.wustl.edu	36	12	92405446	92405446	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	92405446	92405446	C	G	SNP	MRPL42	NM_014050	human	genbank	54_36p	1	reviewed	missense	c.262	p.H88D	1	HMMPfam_MRP-S32	HMMPfam_MRP-S32	-	no_errors
MRPL42	28977	genome.wustl.edu	36	12	92405485	92405485	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	92405485	92405485	G	T	SNP	MRPL42	NM_014050	human	genbank	54_36p	1	reviewed	nonsense	c.301	p.E101*	0	HMMPfam_MRP-S32	HMMPfam_MRP-S32	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9246425	9246425	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	9246425	9246425	G	A	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	silent	c.390	p.V130	1	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9246536	9246536	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	9246536	9246536	G	C	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	missense	c.279	p.I93M	0	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
PZP	5858	genome.wustl.edu	36	12	9247632	9247632	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	9247632	9247632	G	A	SNP	PZP	NM_002864	human	genbank	54_36p	-1	validated	missense	c.266	p.T89I	1	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
CRADD	8738	genome.wustl.edu	36	12	92596747	92596747	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	92596747	92596747	G	T	SNP	CRADD	NM_003805	human	genbank	54_36p	1	reviewed	silent	c.66	p.V22	1	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD"	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,HMMSmart_SM00005,HMMPfam_Death,PatternScan_IG_MHC"	-	no_errors
PLXNC1	10154	genome.wustl.edu	36	12	93099437	93099437	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	93099437	93099437	G	A	SNP	PLXNC1	NM_005761	human	genbank	54_36p	1	provisional	missense	c.1288	p.V430I	0.52	superfamily_Sema	"superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_TIG,HMMSmart_IPT,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	-	no_errors
LOC400061	400061	genome.wustl.edu	36	12	93439105	93439105	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	93439105	93439105	G	A	SNP	LOC400061	XR_016608	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
NR2C1	7181	genome.wustl.edu	36	12	93969683	93969683	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	93969683	93969683	G	A	SNP	NR2C1	NM_003297	human	genbank	54_36p	-1	reviewed	silent	c.951	p.N317	0.33	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,PatternScan_SUBTILASE_ASP,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
FGD6	55785	genome.wustl.edu	36	12	94002491	94002491	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94002491	94002491	C	G	SNP	FGD6	NM_018351	human	genbank	54_36p	-1	validated	missense	c.4170	p.E1390D	0.99	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
VEZT	55591	genome.wustl.edu	36	12	94218234	94218234	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94218234	94218234	G	C	SNP	VEZT	NM_017599	human	genbank	54_36p	1	validated	missense	c.1994	p.C665S	1	NULL	NULL	-	no_errors
HAL	3034	genome.wustl.edu	36	12	94894370	94894370	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94894370	94894370	C	G	SNP	HAL	NM_002108	human	genbank	54_36p	-1	reviewed	missense	c.1801	p.E601Q	1	superfamily_L-Aspartase-like	"superfamily_L-Aspartase-like,HMMPfam_PAL,PatternScan_PAL_HISTIDASE"	-	no_errors
HAL	3034	genome.wustl.edu	36	12	94894533	94894533	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	94894533	94894533	G	A	SNP	HAL	NM_002108	human	genbank	54_36p	-1	reviewed	silent	c.1737	p.V579	1	"HMMPfam_PAL,superfamily_L-Aspartase-like"	"HMMPfam_PAL,PatternScan_PAL_HISTIDASE,superfamily_L-Aspartase-like"	-	no_errors
ELK3	2004	genome.wustl.edu	36	12	95164924	95164924	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	95164924	95164924	C	G	SNP	ELK3	NM_005230	human	genbank	54_36p	1	reviewed	missense	c.283	p.P95A	1	superfamily_Winged helix DNA-binding domain	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
SCYL2	55681	genome.wustl.edu	36	12	99232491	99232491	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99232491	99232491	G	A	SNP	SCYL2	NM_017988	human	genbank	54_36p	1	provisional	missense	c.1063	p.G355R	1	"superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_ARM repeat"	-	no_errors
SLC17A8	246213	genome.wustl.edu	36	12	99308981	99308981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99308981	99308981	G	A	SNP	SLC17A8	NM_139319	human	genbank	54_36p	1	validated	missense	c.426	p.M142I	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC17A8	246213	genome.wustl.edu	36	12	99338033	99338033	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99338033	99338033	C	A	SNP	SLC17A8	NM_139319	human	genbank	54_36p	1	validated	missense	c.1735	p.Q579K	1	NULL	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
NR1H4	9971	genome.wustl.edu	36	12	99454900	99454900	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99454900	99454900	C	T	SNP	NR1H4	NM_005123	human	genbank	54_36p	1	provisional	missense	c.863	p.T288M	1	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
LOC728467	728467	genome.wustl.edu	36	12	99986406	99986406	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	99986406	99986406	T	A	SNP	LOC728467	XR_015542	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000218758	0	genome.wustl.edu	36	19	12219175	12219175	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12219175	12219175	G	C	SNP	ENSG00000218758	ENST00000393337	human	ensembl	54_36p	-1	known	missense	c.1261	p.P421A	0.7	superfamily_SSF57667	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_start_codon
ENSG00000196703	0	genome.wustl.edu	36	11	123591505	123591505	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	123591505	123591505	T	G	SNP	ENSG00000196703	ENST00000334412	human	ensembl	54_36p	1	known	nonsense	c.873	p.Y291*	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_start_codon:no_stop_codon
ENSG00000214298	0	genome.wustl.edu	36	10	126845421	126845421	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	126845421	126845421	G	T	SNP	ENSG00000214298	ENST00000398057	human	ensembl	54_36p	1	known	silent	c.186	p.L62	1	NULL	NULL	-	no_stop_codon
LOC100128729	100128729	genome.wustl.edu	36	7	128005280	128005280	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128005280	128005280	G	A	SNP	LOC100128729	XR_042327	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100131134	100131134	genome.wustl.edu	36	7	128280650	128280650	+	Silent	SNP	T	A	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128280650	128280650	T	A	SNP	LOC100131134	XM_001726492	human	genbank	54_36p	-1	model	silent	c.9	p.V3	0	NULL	NULL	-	no_errors
LOC100130883	100130883	genome.wustl.edu	36	3	129156	129156	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	129156	129156	G	C	SNP	LOC100130883	XM_001714425	human	genbank	54_36p	-1	model	silent	c.384	p.L128	0.06	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
ENSG00000205940	0	genome.wustl.edu	36	4	12948665	12948665	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	12948665	12948665	G	T	SNP	ENSG00000205940	ENST00000382444	human	ensembl	54_36p	1	known	missense	c.918	p.E306D	1	"HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold"	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold"	-	no_stop_codon:bad_bp_length_for_coding_region
TMTC4	84899	genome.wustl.edu	36	13	100085302	100085302	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100085302	100085302	G	C	SNP	TMTC4	NM_032813	human	genbank	54_36p	-1	validated	missense	c.1351	p.L451V	0.14	NULL	"HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100512349	100512349	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100512349	100512349	A	G	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4727	p.L1576P	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100512443	100512443	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100512443	100512443	G	A	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4633	p.R1545W	1	NULL	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100515868	100515868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100515868	100515868	C	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.4493	p.R1498H	1	NULL	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100533220	100533220	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100533220	100533220	G	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.3706	p.P1236T	1	superfamily_Voltage-gated potassium channels	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100742594	100742594	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	13	100742594	100742594	G	T	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.924	p.F308L	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100828997	100828997	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	100828997	100828997	A	C	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.300	p.S100R	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
ITGBL1	9358	genome.wustl.edu	36	13	101018076	101018076	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	101018076	101018076	G	A	SNP	ITGBL1	NM_004791	human	genbank	54_36p	1	provisional	silent	c.342	p.K114	1	"superfamily_SSF57196,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA"	"HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF"	-	no_errors
TPP2	7174	genome.wustl.edu	36	13	102078242	102078242	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102078242	102078242	G	C	SNP	TPP2	NM_003291	human	genbank	54_36p	1	reviewed	missense	c.983	p.S328T	1	"superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8"	"PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER"	-	no_errors
ERCC5	2073	genome.wustl.edu	36	13	102308654	102308654	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102308654	102308654	T	C	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	missense	c.557	p.I186T	0.98	superfamily_PIN domain-like	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
ERCC5	2073	genome.wustl.edu	36	13	102326188	102326188	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102326188	102326188	C	T	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	silent	c.3495	p.A1165	1	NULL	"HMMPfam_XPG_N,HMMSmart_SM00485,HMMPfam_XPG_I,HMMSmart_SM00484,PatternScan_XPG_2,HMMSmart_SM00279,PatternScan_XPG_1,superfamily_5' to 3' exonuclease C-terminal subdomain,superfamily_PIN domain-like"	-	no_errors
SLC10A2	6555	genome.wustl.edu	36	13	102516248	102516248	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	102516248	102516248	C	T	SNP	SLC10A2	NM_000452	human	genbank	54_36p	-1	validated	nonsense	c.353	p.W118*	1	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
LOC390424	390424	genome.wustl.edu	36	13	106114293	106114294	+	RNA	INS	-	-	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	106114293	106114294	-	A	INS	LOC390424	XR_016535	human	genbank	54_36p	1	model	rna	NULL	NULL	0.958:0.959	-	-	-	no_errors
ABHD13	84945	genome.wustl.edu	36	13	107679821	107679821	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	107679821	107679821	C	T	SNP	ABHD13	NM_032859	human	genbank	54_36p	1	validated	missense	c.254	p.P85L	1	superfamily_alpha/beta-Hydrolases	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108116343	108116343	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108116343	108116343	G	A	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.71	p.R24H	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108116425	108116425	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108116425	108116425	G	A	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	silent	c.153	p.A51	0.01	superfamily_Ankyrin repeat	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108338817	108338817	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108338817	108338817	A	T	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.1584	p.R528S	0.99	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108575501	108575501	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	108575501	108575501	A	G	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	silent	c.3510	p.R1170	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
COL4A1	1282	genome.wustl.edu	36	13	109615261	109615261	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	13	109615261	109615261	G	A	SNP	COL4A1	NM_001845	human	genbank	54_36p	-1	reviewed	missense	c.4099	p.P1367S	0.97	HMMPfam_Collagen	"HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111"	-	no_errors
COL4A1	1282	genome.wustl.edu	36	13	109625612	109625612	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	109625612	109625612	T	A	SNP	COL4A1	NM_001845	human	genbank	54_36p	-1	reviewed	missense	c.3152	p.Q1051L	0.99	HMMPfam_Collagen	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A2	1284	genome.wustl.edu	36	13	109880245	109880245	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	109880245	109880245	C	T	SNP	COL4A2	NM_001846	human	genbank	54_36p	1	reviewed	missense	c.490	p.P164S	1	HMMPfam_Collagen	"HMMPfam_Collagen,HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold"	-	no_errors
ING1	3621	genome.wustl.edu	36	13	110170145	110170145	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	110170145	110170145	G	T	SNP	ING1	NM_005537	human	genbank	54_36p	1	reviewed	missense	c.1134	p.W378C	1	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
ARHGEF7	8874	genome.wustl.edu	36	13	110736520	110736520	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	110736520	110736520	T	G	SNP	ARHGEF7	NM_145735	human	genbank	54_36p	1	reviewed	missense	c.1976	p.M659R	1	NULL	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
ATP4B	496	genome.wustl.edu	36	13	113355240	113355240	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	113355240	113355240	G	C	SNP	ATP4B	NM_000705	human	genbank	54_36p	-1	reviewed	silent	c.504	p.P168	0.52	HMMPfam_Na_K-ATPase	"HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2"	-	no_errors
ZNF828	283489	genome.wustl.edu	36	13	114107684	114107684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	114107684	114107684	G	C	SNP	ZNF828	NM_032436	human	genbank	54_36p	1	provisional	missense	c.265	p.D89H	0.98	superfamily_C2H2 and C2HC zinc fingers	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC283523	283523	genome.wustl.edu	36	13	18153787	18153787	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18153787	18153787	A	T	SNP	LOC283523	XM_001714856	human	genbank	54_36p	1	model	nonsense	c.1243	p.K415*	1	"superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	"superfamily_Telomeric repeat binding factor (TRF) dimerisation domain,HMMPfam_TRF,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	pseudogene
TUBA3C	7278	genome.wustl.edu	36	13	18646050	18646051	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	CC	CC	CC	AA	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18646050	18646051	CC	AA	DNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.1306_1305	p.G436C	0.999:0.979	superfamily_Tubulin C-terminal domain-like	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18649364	18649364	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18649364	18649364	C	T	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	silent	c.759	p.T253	0.96	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
TUBA3C	7278	genome.wustl.edu	36	13	18650417	18650417	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18650417	18650417	A	G	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.344	p.V115A	1	"HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like"	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
TPTE2	93492	genome.wustl.edu	36	13	18954660	18954660	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18954660	18954660	T	G	SNP	TPTE2	NM_199254	human	genbank	54_36p	-1	validated	missense	c.147	p.E49D	0	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2"	-	no_errors
ZMYM2	7750	genome.wustl.edu	36	13	19539011	19539011	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	19539011	19539011	A	G	SNP	ZMYM2	NM_003453	human	genbank	54_36p	1	validated	silent	c.3153	p.V1051	1	NULL	"HMMPfam_zf-FCS,HMMSmart_TRASH"	-	no_errors
SACS	26278	genome.wustl.edu	36	13	22811133	22811133	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	22811133	22811133	G	A	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	nonsense	c.4441	p.Q1481*	1	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Chaperone J-domain,HMMPfam_HEPN,superfamily_Nucleotidyltransferase substrate binding subunit/domain,HMMSmart_SM00748"	-	no_errors
SACS	26278	genome.wustl.edu	36	13	22811870	22811870	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	22811870	22811870	T	C	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	missense	c.3704	p.H1235R	1	NULL	"superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Nucleotidyltransferase substrate binding subunit/domain"	-	no_errors
PARP4	143	genome.wustl.edu	36	13	23949839	23949839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	23949839	23949839	C	G	SNP	PARP4	NM_006437	human	genbank	54_36p	-1	reviewed	missense	c.1789	p.D597H	1	NULL	"HMMPfam_BRCT,superfamily_BRCT,HMMSmart_BRCT,superfamily_PARP_reg,HMMPfam_PARP,superfamily_SSF56399,HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	-	no_errors
FAM123A	219287	genome.wustl.edu	36	13	24641799	24641799	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	24641799	24641799	G	T	SNP	FAM123A	NM_152704	human	genbank	54_36p	-1	validated	silent	c.1959	p.G653	1	NULL	HMMPfam_WTX	-	no_errors
MTMR6	9107	genome.wustl.edu	36	13	24724045	24724045	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	24724045	24724045	G	A	SNP	MTMR6	NM_004685	human	genbank	54_36p	-1	validated	missense	c.1424	p.S475F	0.95	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
MTMR6	9107	genome.wustl.edu	36	13	24729942	24729942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	24729942	24729942	C	T	SNP	MTMR6	NM_004685	human	genbank	54_36p	-1	validated	missense	c.901	p.G301S	1	"HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMSmart_SM00404,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
ATP8A2	51761	genome.wustl.edu	36	13	25309376	25309376	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	25309376	25309376	C	T	SNP	ATP8A2	NM_016529	human	genbank	54_36p	1	validated	missense	c.2830	p.P944S	1	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
GTF3A	2971	genome.wustl.edu	36	13	26907711	26907711	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	26907711	26907711	G	A	SNP	GTF3A	ENST00000381140	human	ensembl	54_36p	1	known	missense	c.1246	p.V416I	0.01	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
LNX2	222484	genome.wustl.edu	36	13	27039953	27039953	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27039953	27039953	G	A	SNP	LNX2	NM_153371	human	genbank	54_36p	-1	validated	missense	c.679	p.P227S	1	superfamily_PDZ	"superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
LNX2	222484	genome.wustl.edu	36	13	27053767	27053767	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27053767	27053767	T	A	SNP	LNX2	NM_153371	human	genbank	54_36p	-1	validated	missense	c.74	p.E25V	1	superfamily_SSF57850	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
GSX1	219409	genome.wustl.edu	36	13	27266002	27266002	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27266002	27266002	A	T	SNP	GSX1	NM_145657	human	genbank	54_36p	1	provisional	nonsense	c.712	p.K238*	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ATP5EP2	432369	genome.wustl.edu	36	13	27417532	27417532	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27417532	27417532	G	T	SNP	ATP5EP2	ENST00000381026	human	ensembl	54_36p	1	known	missense	c.136	p.V46L	1	"superfamily_ATP_synth_E,HMMPfam_ATP-synt_Eps"	"superfamily_ATP_synth_E,HMMPfam_ATP-synt_Eps"	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506122	27506122	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27506122	27506122	A	G	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.1844	p.V615A	0.92	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
FLT1	2321	genome.wustl.edu	36	13	27878000	27878000	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27878000	27878000	A	G	SNP	FLT1	NM_002019	human	genbank	54_36p	-1	validated	missense	c.1468	p.F490L	0.11	"superfamily_Immunoglobulin,HMMSmart_SM00409"	###############################################################################################################################################################################################################################################################	-	no_errors
FLT1	2321	genome.wustl.edu	36	13	27906235	27906235	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	27906235	27906235	A	T	SNP	FLT1	NM_002019	human	genbank	54_36p	-1	validated	missense	c.636	p.N212K	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
MTUS2	23281	genome.wustl.edu	36	13	28796764	28796764	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	28796764	28796764	G	A	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	1	validated	missense	c.2851	p.A951T	0.07	NULL	NULL	-	no_errors
C13orf26	122046	genome.wustl.edu	36	13	30424879	30424879	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	30424879	30424879	A	C	SNP	C13orf26	NM_152325	human	genbank	54_36p	1	predicted	missense	c.229	p.T77P	0.07	NULL	NULL	-	no_errors
B3GALTL	145173	genome.wustl.edu	36	13	30758859	30758859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	30758859	30758859	C	T	SNP	B3GALTL	NM_194318	human	genbank	54_36p	1	reviewed	missense	c.967	p.H323Y	1	HMMPfam_Fringe	"HMMPfam_Fringe,PatternScan_ER_TARGET"	-	no_errors
FRY	10129	genome.wustl.edu	36	13	31733643	31733643	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31733643	31733643	A	G	SNP	FRY	ENST00000380257	human	ensembl	54_36p	1	known	silent	c.7422	p.L2474	0	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31810178	31810178	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	-	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31810178	31810178	T	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.3686	p.S1230fs	0.94	HMMPfam_BRCA2	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31808402,31813333])"	no_errors
BRCA2	675	genome.wustl.edu	36	13	31810708	31810711	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	AAAG	AAAG	AAAG	-	AAAG	AAAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31810708	31810711	AAAG	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.4216_4219	p.K1406fs	0.382:0.373:0.386:0.064	NULL	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31808402,31813333])"	no_errors
BRCA2	675	genome.wustl.edu	36	13	31811404	31811404	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31811404	31811404	A	G	SNP	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	missense	c.4912	p.K1638E	0.82	NULL	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31835426	31835441	+	Frame_Shift_Del	DEL	TGAGCGCAAATATATC	TGAGCGCAAATATATC	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	TGAGCGCAAATATATC	TGAGCGCAAATATATC	TGAGCGCAAATATATC	-	TGAGCGCAAATATATC	TGAGCGCAAATATATC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31835426	31835441	TGAGCGCAAATATATC	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.8087_8102	p.S2697fs	0.000:0.000:0.002:0.003:0.004:0.003:0.005:0.002:0.001:0.001:0.001:0.001:0.001:0.001:0.000:0.003	"HMMPfam_BRCA-2_OB1,superfamily_Nucleic_acid_OB"	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31835316,31835670])"	no_errors
N4BP2L2	10443	genome.wustl.edu	36	13	31914881	31914893	+	Frame_Shift_Del	DEL	AAAGAAGGAATAT	AAAGAAGGAATAT	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	AAAGAAGGAATAT	AAAGAAGGAATAT	AAAGAAGGAATAT	-	AAAGAAGGAATAT	AAAGAAGGAATAT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	31914881	31914893	AAAGAAGGAATAT	-	DEL	N4BP2L2	NM_033111	human	genbank	54_36p	-1	validated	frame_shift_del	c.1793_1781	p.Y594fs	0.710:0.923:0.954:0.983:0.982:0.982:0.976:0.947:0.842:0.518:0.003:0.004:0.002	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	"(deletion:cds_exon[31914525,31916263])"	no_errors
PDS5B	23047	genome.wustl.edu	36	13	32228035	32228035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	32228035	32228035	G	T	SNP	PDS5B	NM_015032	human	genbank	54_36p	1	validated	missense	c.2997	p.L999F	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook"	-	no_errors
STARD13	90627	genome.wustl.edu	36	13	32614466	32614466	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	32614466	32614466	A	T	SNP	STARD13	NM_178006	human	genbank	54_36p	-1	validated	missense	c.368	p.V123E	1	NULL	"HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
STARD13	90627	genome.wustl.edu	36	13	32637488	32637488	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	32637488	32637488	T	A	SNP	STARD13	NM_178006	human	genbank	54_36p	-1	validated	silent	c.309	p.V103	1	HMMPfam_SAM_2	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	34513294	34513294	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	34513294	34513294	G	A	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.519	p.M173I	1	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	34528261	34528261	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	34528261	34528261	A	T	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.1087	p.N363Y	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat"	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	34633998	34633998	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	34633998	34633998	C	T	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.3973	p.R1325W	1	superfamily_ARM repeat	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	35022684	35022684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35022684	35022684	G	C	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.6656	p.R2219P	1	"superfamily_ARM repeat,superfamily_PH domain-like"	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
DCLK1	9201	genome.wustl.edu	36	13	35282981	35282981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35282981	35282981	G	A	SNP	DCLK1	NM_004734	human	genbank	54_36p	-1	validated	missense	c.1679	p.A560V	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DCLK1	9201	genome.wustl.edu	36	13	35322904	35322904	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35322904	35322904	G	A	SNP	DCAMKL1	ENST00000379892	human	ensembl	54_36p	-1	known	missense	c.1045	p.R349C	1	NULL	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX"	-	no_errors
CCNA1	8900	genome.wustl.edu	36	13	35914759	35914759	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	35914759	35914759	G	A	SNP	CCNA1	NM_003914	human	genbank	54_36p	1	reviewed	missense	c.1355	p.C452Y	0.77	"HMMPfam_Cyclin_C,superfamily_Cyclin-like"	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_SM00385,HMMPfam_Cyclin_C"	-	no_errors
RFXAP	5994	genome.wustl.edu	36	13	36292092	36292092	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	36292092	36292092	G	T	SNP	RFXAP	NM_000538	human	genbank	54_36p	1	reviewed	nonsense	c.598	p.E200*	1	NULL	NULL	-	no_errors
POSTN	10631	genome.wustl.edu	36	13	37036662	37036663	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	37036662	37036663	-	T	INS	POSTN	NM_006475	human	genbank	54_36p	-1	validated	frame_shift_ins	c.2467_2466	p.V822fs	0.975:0.976	NULL	"HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554"	-	no_errors
TRPC4	7223	genome.wustl.edu	36	13	37123424	37123424	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	37123424	37123424	G	T	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	missense	c.2057	p.P686Q	1	NULL	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1"	-	no_errors
TRPC4	7223	genome.wustl.edu	36	13	37123513	37123513	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	37123513	37123513	G	C	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	silent	c.1968	p.P656	0.99	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2,PatternScan_RIBOSOMAL_S2_1"	-	no_errors
UFM1	51569	genome.wustl.edu	36	13	37826430	37826441	+	Splice_Site	DEL	AGAAGTAAGTAC	AGAAGTAAGTAC	-	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	AGAAGTAAGTAC	AGAAGTAAGTAC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	37826430	37826441	AGAAGTAAGTAC	-	DEL	UFM1	NM_016617	human	genbank	54_36p	1	validated	splice_site_del	c.114_117	p.E38fs	1.000:1.000:1.000:1.000	"superfamily_Ubiquitin-like,HMMPfam_Ufm1"	"superfamily_Ubiquitin-like,HMMPfam_Ufm1"	"(deletion:cds_exon[37826376,37826433], intron[37826434,37830229])"	no_errors
FREM2	341640	genome.wustl.edu	36	13	38162383	38162383	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38162383	38162383	G	A	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.2902	p.V968I	0.92	NULL	"HMMSmart_SM00237,HMMPfam_Calx-beta"	-	no_errors
FREM2	341640	genome.wustl.edu	36	13	38256814	38256814	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38256814	38256814	T	C	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.5888	p.I1963T	0.07	"HMMPfam_Calx-beta,HMMSmart_SM00237"	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
FREM2	341640	genome.wustl.edu	36	13	38328279	38328279	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38328279	38328279	A	T	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.6942	p.E2314D	0.98	"HMMPfam_Calx-beta,HMMSmart_SM00237"	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
STOML3	161003	genome.wustl.edu	36	13	38439003	38439003	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	38439003	38439003	C	T	SNP	STOML3	NM_145286	human	genbank	54_36p	-1	validated	missense	c.835	p.V279I	0	NULL	"HMMSmart_PHB,HMMPfam_Band_7,PatternScan_BAND_7"	-	no_errors
KBTBD6	89890	genome.wustl.edu	36	13	40603167	40603167	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	40603167	40603167	A	C	SNP	KBTBD6	NM_152903	human	genbank	54_36p	-1	validated	missense	c.1481	p.M494R	1	superfamily_Gal_oxid_central	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
KBTBD7	84078	genome.wustl.edu	36	13	40664661	40664661	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	40664661	40664661	C	G	SNP	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	missense	c.1733	p.W578S	1	superfamily_Galactose oxidase central domain	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
KBTBD7	84078	genome.wustl.edu	36	13	40665783	40665783	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	40665783	40665783	C	A	SNP	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	missense	c.611	p.S204I	0.97	HMMPfam_BACK	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
KIAA0564	23078	genome.wustl.edu	36	13	41147411	41147411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	41147411	41147411	G	C	SNP	KIAA0564	NM_015058	human	genbank	54_36p	-1	validated	missense	c.4349	p.S1450C	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMSmart_SM00382,superfamily_vWA-like,HMMSmart_SM00327"	-	no_errors
DGKH	160851	genome.wustl.edu	36	13	41691919	41691919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	41691919	41691919	G	A	SNP	DGKH	NM_178009	human	genbank	54_36p	1	reviewed	missense	c.3431	p.S1144N	1	superfamily_SAM/Pointed domain	###############################################################################################################################################################################################################################################################	-	no_errors
EPSTI1	94240	genome.wustl.edu	36	13	42360622	42360622	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	42360622	42360622	A	G	SNP	EPSTI1	NM_001002264	human	genbank	54_36p	-1	validated	silent	c.997	p.L333	0.24	NULL	NULL	-	no_errors
CPB2	1361	genome.wustl.edu	36	13	45525782	45525782	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	45525782	45525782	T	G	SNP	CPB2	NM_001872	human	genbank	54_36p	-1	reviewed	missense	c.1240	p.K414Q	0.72	superfamily_Zn-dependent exopeptidases	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14"	-	no_errors
LCP1	3936	genome.wustl.edu	36	13	45614517	45614517	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	45614517	45614517	C	T	SNP	LCP1	NM_002298	human	genbank	54_36p	-1	reviewed	silent	c.1413	p.A471	1	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH"	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2"	-	no_errors
LRCH1	23143	genome.wustl.edu	36	13	46158085	46158085	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	46158085	46158085	A	G	SNP	LRCH1	NM_015116	human	genbank	54_36p	1	provisional	missense	c.730	p.K244E	1	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,PatternScan_PTS_HPR_SER,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
HTR2A	3356	genome.wustl.edu	36	13	46307197	46307197	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	46307197	46307197	G	C	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	missense	c.1192	p.Q398E	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HTR2A	3356	genome.wustl.edu	36	13	46364583	46364583	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	46364583	46364583	A	G	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	missense	c.556	p.F186L	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MED4	29079	genome.wustl.edu	36	13	47562502	47562502	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	47562502	47562502	C	A	SNP	MED4	NM_014166	human	genbank	54_36p	-1	provisional	missense	c.179	p.G60V	1	HMMPfam_VDRIP	HMMPfam_VDRIP	-	no_errors
TRIM13	10206	genome.wustl.edu	36	13	49484660	49484660	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	49484660	49484660	C	T	SNP	TRIM13	NM_001007278	human	genbank	54_36p	1	reviewed	nonsense	c.592	p.Q198*	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57845"	-	no_errors
TRIM13	10206	genome.wustl.edu	36	13	49485278	49485278	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	49485278	49485278	G	T	SNP	TRIM13	NM_001007278	human	genbank	54_36p	1	reviewed	missense	c.1210	p.V404L	1	NULL	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57845,superfamily_SSF57850"	-	no_errors
INTS6	26512	genome.wustl.edu	36	13	50841316	50841317	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	CC	CC	CC	TT	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	50841316	50841317	CC	TT	DNP	INTS6	NM_012141	human	genbank	54_36p	-1	reviewed	missense	c.2236_2235	p.E746K	0.994:0.986	NULL	"superfamily_vWA-like,PatternScan_DEAD_ATP_HELICASE"	-	no_errors
ALG11	440138	genome.wustl.edu	36	13	51491273	51491273	+	Missense_Mutation	SNP	C	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	13	51491273	51491273	C	G	SNP	ALG11	NM_001004127	human	genbank	54_36p	1	provisional	missense	c.268	p.Q90E	1	superfamily_SSF53756	"superfamily_SSF53756,HMMPfam_Glycos_transf_1"	-	no_errors
THSD1	55901	genome.wustl.edu	36	13	51870016	51870016	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	51870016	51870016	C	A	SNP	THSD1	NM_018676	human	genbank	54_36p	-1	reviewed	missense	c.373	p.V125L	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
CKAP2	26586	genome.wustl.edu	36	13	51946157	51946157	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	51946157	51946157	A	G	SNP	CKAP2	NM_001098525	human	genbank	54_36p	1	validated	missense	c.1742	p.N581S	0	NULL	NULL	-	no_errors
PCDH17	27253	genome.wustl.edu	36	13	57106328	57106328	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	57106328	57106328	G	A	SNP	PCDH17	NM_001040429	human	genbank	54_36p	1	reviewed	silent	c.1647	p.E549	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDH17	27253	genome.wustl.edu	36	13	57106788	57106788	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	57106788	57106788	G	A	SNP	PCDH17	NM_001040429	human	genbank	54_36p	1	reviewed	missense	c.2107	p.D703N	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
DIAPH3	81624	genome.wustl.edu	36	13	59305280	59305280	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	59305280	59305280	A	T	SNP	DIAPH3	NM_001042517	human	genbank	54_36p	-1	validated	missense	c.2989	p.F997I	0.99	"superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,PatternScan_RNASE_PANCREATIC,HMMPfam_Drf_DAD"	-	no_errors
DIAPH3	81624	genome.wustl.edu	36	13	59311503	59311503	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	59311503	59311503	G	A	SNP	DIAPH3	NM_001042517	human	genbank	54_36p	-1	validated	missense	c.2818	p.P940S	1	"HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	"PatternScan_RNASE_PANCREATIC,HMMSmart_SM00498,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	-	no_errors
PCDH20	64881	genome.wustl.edu	36	13	60883960	60883960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	60883960	60883960	G	T	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	missense	c.2192	p.T731N	1	"superfamily_Cadherin,HMMPfam_Cadherin"	"HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDH20	64881	genome.wustl.edu	36	13	60884438	60884438	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	60884438	60884438	G	T	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	silent	c.1714	p.R572	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDH20	64881	genome.wustl.edu	36	13	60884812	60884812	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	60884812	60884812	G	A	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	missense	c.1340	p.P447L	1	"HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDH9	5101	genome.wustl.edu	36	13	65777069	65777069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	65777069	65777069	G	A	SNP	PCDH9	NM_203487	human	genbank	54_36p	-1	reviewed	missense	c.3433	p.P1145S	1	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMPfam_Protocadherin"	-	no_errors
PCDH9	5101	genome.wustl.edu	36	13	66103459	66103459	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	13	66103459	66103459	C	T	SNP	PCDH9	NM_203487	human	genbank	54_36p	-1	reviewed	missense	c.3224	p.G1075D	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like"	-	no_errors
KLF12	11278	genome.wustl.edu	36	13	73187530	73187530	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	73187530	73187530	T	C	SNP	KLF12	NM_007249	human	genbank	54_36p	-1	validated	missense	c.1003	p.K335E	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC647288	647288	genome.wustl.edu	36	13	74711645	74711645	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	74711645	74711645	A	T	SNP	LOC647288	XR_017516	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.87	-	-	-	pseudogene
LOC647288	647288	genome.wustl.edu	36	13	74712540	74712540	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	74712540	74712540	C	A	SNP	LOC647288	XR_017516	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC390413	390413	genome.wustl.edu	36	13	76453818	76453818	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76453818	76453818	C	T	SNP	LOC390413	XR_017528	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CLN5	1203	genome.wustl.edu	36	13	76468169	76468169	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76468169	76468169	C	T	SNP	CLN5	NM_006493	human	genbank	54_36p	1	reviewed	silent	c.618	p.F206	1	NULL	NULL	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76527820	76527820	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76527820	76527820	C	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.13407	p.M4469I	1	NULL	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76536761	76536761	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76536761	76536761	G	C	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.12548	p.A4183G	1	NULL	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76638566	76638566	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76638566	76638566	C	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.6125	p.G2042A	1	NULL	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76652359	76652359	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76652359	76652359	T	G	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.4923	p.R1641S	1	NULL	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
MYCBP2	23077	genome.wustl.edu	36	13	76696612	76696612	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	76696612	76696612	G	C	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.2800	p.L934V	1	"HMMPfam_RCC1,superfamily_RCC1/BLIP-II"	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box"	-	no_errors
SCEL	8796	genome.wustl.edu	36	13	77065663	77065663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	77065663	77065663	G	C	SNP	SCEL	NM_144777	human	genbank	54_36p	1	reviewed	missense	c.706	p.D236H	0.01	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1"	-	no_errors
SLAIN1	122060	genome.wustl.edu	36	13	77216405	77216405	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	77216405	77216405	C	T	SNP	SLAIN1	ENST00000377236	human	ensembl	54_36p	1	known	silent	c.42	p.F14	0	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region
POU4F1	5457	genome.wustl.edu	36	13	78073769	78073769	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	78073769	78073769	C	G	SNP	POU4F1	NM_006237	human	genbank	54_36p	-1	validated	missense	c.1042	p.E348Q	1	superfamily_Homeodomain-like	"HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
RBM26	64062	genome.wustl.edu	36	13	78831779	78831779	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	78831779	78831779	T	G	SNP	RBM26	NM_022118	human	genbank	54_36p	-1	validated	silent	c.1461	p.S487	1	NULL	"superfamily_SSF101233,HMMPfam_DUF1777,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928,HMMSmart_RRM"	-	no_errors
SPRY2	10253	genome.wustl.edu	36	13	79809658	79809658	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	79809658	79809658	C	T	SNP	SPRY2	NM_005842	human	genbank	54_36p	-1	reviewed	missense	c.184	p.V62I	1	NULL	HMMPfam_Sprouty	-	no_errors
SLITRK6	84189	genome.wustl.edu	36	13	85268362	85268362	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	85268362	85268362	G	T	SNP	SLITRK6	NM_032229	human	genbank	54_36p	-1	validated	missense	c.283	p.L95I	1	"superfamily_L domain-like,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT"	-	no_errors
SLITRK5	26050	genome.wustl.edu	36	13	87127446	87127446	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	87127446	87127446	C	A	SNP	SLITRK5	NM_015567	human	genbank	54_36p	1	validated	missense	c.1802	p.T601N	0.9	"superfamily_L domain-like,HMMSmart_SM00082"	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT"	-	no_errors
DCT	1638	genome.wustl.edu	36	13	93929317	93929317	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	93929317	93929317	C	G	SNP	DCT	NM_001922	human	genbank	54_36p	-1	validated	missense	c.194	p.R65P	0.1	NULL	"superfamily_Di-copper_centre,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2"	-	no_errors
CLDN10	9071	genome.wustl.edu	36	13	94884273	94884273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	94884273	94884273	G	T	SNP	CLDN10	NM_182848	human	genbank	54_36p	1	reviewed	missense	c.185	p.R62L	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
DZIP1	22873	genome.wustl.edu	36	13	95075051	95075051	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	95075051	95075051	A	T	SNP	DZIP1	NM_198968	human	genbank	54_36p	-1	validated	nonsense	c.944	p.L315*	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
DNAJC3	5611	genome.wustl.edu	36	13	95193152	95193152	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	95193152	95193152	T	A	SNP	DNAJC3	ENST00000360638	human	ensembl	54_36p	1	known	missense	c.657	p.S219R	0	NULL	"superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_1"	-	no_errors
SLC15A1	6564	genome.wustl.edu	36	13	98158993	98158993	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	98158993	98158993	A	G	SNP	SLC15A1	NM_005073	human	genbank	54_36p	-1	validated	missense	c.1097	p.V366A	1	"superfamily_MFS general substrate transporter,HMMPfam_PTR2"	"superfamily_MFS general substrate transporter,PatternScan_PTR2_1,HMMPfam_PTR2,PatternScan_PTR2_2"	-	no_errors
ENSG00000214100	0	genome.wustl.edu	36	2	130399744	130399744	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	130399744	130399744	C	T	SNP	ENSG00000214100	ENST00000397540	human	ensembl	54_36p	-1	novel	missense	c.14	p.C5Y	0.27	NULL	NULL	-	no_errors
POTEKP	440915	genome.wustl.edu	36	2	132074138	132074138	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	132074138	132074138	C	G	SNP	ACTBL3	ENST00000397487	human	ensembl	54_36p	1	known	missense	c.790	p.L264V	0	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_stop_codon
LOC100128322	100128322	genome.wustl.edu	36	6	132189957	132189957	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132189957	132189957	A	G	SNP	LOC100128322	XR_039280	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100128322	100128322	genome.wustl.edu	36	6	132191190	132191190	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132191190	132191190	G	T	SNP	LOC100128322	XR_039280	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MIR20B	574032	genome.wustl.edu	36	X	133131530	133131530	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	133131530	133131530	T	C	SNP	MIRN20B	ENST00000384977	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1	-	-	-	no_errors
MIR504	574507	genome.wustl.edu	36	X	137577620	137577620	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	137577620	137577620	C	A	SNP	MIRN504	ENST00000385065	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.86	-	-	-	no_errors
PPP2R5C	5527	genome.wustl.edu	36	14	101453935	101453935	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101453935	101453935	T	G	SNP	PPP2R5C	NM_002719	human	genbank	54_36p	1	reviewed	missense	c.1341	p.S447R	1	NULL	"HMMPfam_B56,superfamily_ARM repeat"	-	no_errors
HSP90AA1	3320	genome.wustl.edu	36	14	101621019	101621022	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	TTTC	TTTC	TTTC	-	TTTC	TTTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101621019	101621022	TTTC	-	DEL	HSP90AA1	NM_001017963	human	genbank	54_36p	-1	validated	frame_shift_del	c.1099_1096	p.E366fs	0.847:0.837:0.989:0.994	HMMPfam_HSP90	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[101620771,101621088])"	no_errors
RAGE	5891	genome.wustl.edu	36	14	101765638	101765638	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101765638	101765638	G	C	SNP	RAGE	NM_014226	human	genbank	54_36p	-1	provisional	missense	c.1091	p.S364C	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
RAGE	5891	genome.wustl.edu	36	14	101768721	101768721	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	101768721	101768721	T	G	SNP	RAGE	NM_014226	human	genbank	54_36p	-1	provisional	missense	c.770	p.Q257P	0.03	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
BAG5	9529	genome.wustl.edu	36	14	103096679	103096679	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	103096679	103096679	C	A	SNP	BAG5	NM_001015049	human	genbank	54_36p	-1	reviewed	missense	c.699	p.E233D	0.98	"superfamily_BAG domain,HMMPfam_BAG,HMMSmart_SM00264"	"superfamily_BAG domain,HMMPfam_BAG,HMMSmart_SM00264"	-	no_errors
TDRD9	122402	genome.wustl.edu	36	14	103552136	103552136	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	103552136	103552136	G	T	SNP	TDRD9	NM_153046	human	genbank	54_36p	1	validated	silent	c.1434	p.A478	0.03	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333"	-	no_errors
ADSSL1	122622	genome.wustl.edu	36	14	104282285	104282285	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104282285	104282285	T	A	SNP	ADSSL1	NM_199165	human	genbank	54_36p	1	validated	missense	c.1294	p.F432I	1	"HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540"	"HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540,PatternScan_ADENYLOSUCCIN_SYN_2"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104477692	104477692	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104477692	104477692	A	C	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.15141	p.P5047	0	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104482768	104482768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104482768	104482768	G	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.10065	p.D3355E	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104483748	104483748	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	104483748	104483748	C	G	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.9085	p.E3029Q	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	genome.wustl.edu	36	14	104484262	104484262	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	104484262	104484262	C	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.8571	p.K2857	0.38	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
CDCA4	55038	genome.wustl.edu	36	14	104549113	104549113	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104549113	104549113	G	A	SNP	CDCA4	NM_017955	human	genbank	54_36p	-1	reviewed	missense	c.199	p.R67W	1	HMMPfam_SERTA	HMMPfam_SERTA	-	no_errors
GPR132	29933	genome.wustl.edu	36	14	104589053	104589053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104589053	104589053	G	A	SNP	GPR132	NM_013345	human	genbank	54_36p	-1	reviewed	missense	c.466	p.R156W	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR132	29933	genome.wustl.edu	36	14	104589084	104589084	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104589084	104589084	C	T	SNP	GPR132	NM_013345	human	genbank	54_36p	-1	reviewed	silent	c.435	p.V145	0.57	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
BRF1	2972	genome.wustl.edu	36	14	104755051	104755051	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	104755051	104755051	G	T	SNP	BRF1	NM_001519	human	genbank	54_36p	-1	reviewed	silent	c.1647	p.A549	0.15	NULL	"HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB,HMMPfam_BRF1"	-	no_errors
IGHE	3497	genome.wustl.edu	36	14	105138472	105138472	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105138472	105138472	A	T	SNP	IGHE	ENST00000390540	human	ensembl	54_36p	-1	known	missense	c.421	p.Y141N	0	"superfamily_SSF48726,HMMSmart_IGc1,HMMPfam_C1-set"	"superfamily_SSF48726,HMMSmart_IGc1,HMMPfam_C1-set,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHG2	3501	genome.wustl.edu	36	14	105180768	105180768	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	105180768	105180768	C	A	SNP	IGHG2	ENST00000390544	human	ensembl	54_36p	-1	known	nonsense	c.793	p.G265*	0.01	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHD	3495	genome.wustl.edu	36	14	105377897	105377897	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105377897	105377897	G	A	SNP	IGHD	ENST00000390556	human	ensembl	54_36p	-1	known	missense	c.976	p.L326F	0	"superfamily_Immunoglobulin,HMMSmart_SM00407,HMMPfam_C1-set"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_ig"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHD	3495	genome.wustl.edu	36	14	105382769	105382771	+	In_Frame_Del	DEL	CTC	CTC	-	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105382769	105382771	CTC	-	DEL	IGHD	ENST00000390556	human	ensembl	54_36p	-1	known	in_frame_del	c.287_285	p.R96in_frame_del	0.000:0.001:0.001	"HMMPfam_C1-set,superfamily_Immunoglobulin"	"PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_ig,superfamily_Immunoglobulin"	"(deletion:cds_exon[105382753,105383055])"	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
IGHM	3507	genome.wustl.edu	36	14	105391761	105391761	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	105391761	105391761	C	A	SNP	IGHM	ENST00000390558	human	ensembl	54_36p	-1	known	nonsense	c.1093	p.G365*	1	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211954	0	genome.wustl.edu	36	14	105876484	105876484	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	105876484	105876484	T	C	SNP	ENSG00000211954	ENST00000390614	human	ensembl	54_36p	-1	known	missense	c.124	p.T42A	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211962	0	genome.wustl.edu	36	14	106038188	106038188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	106038188	106038188	C	T	SNP	ENSG00000211962	ENST00000390622	human	ensembl	54_36p	-1	known	missense	c.257	p.R86K	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000215398	0	genome.wustl.edu	36	14	18187185	18187185	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	18187185	18187185	C	A	SNP	ENSG00000215398	ENST00000400208	human	ensembl	54_36p	1	known	nonsense	c.491	p.S164*	0.01	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE"	-	no_start_codon
OR11H12	440153	genome.wustl.edu	36	14	18447700	18447700	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	18447700	18447700	G	A	SNP	OR11H12	NM_001013354	human	genbank	54_36p	1	provisional	nonsense	c.107	p.W36*	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR11H12	440153	genome.wustl.edu	36	14	18447878	18447878	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	18447878	18447878	G	T	SNP	OR11H12	NM_001013354	human	genbank	54_36p	1	provisional	missense	c.285	p.K95N	0.05	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LOC642458	642458	genome.wustl.edu	36	14	18558349	18558349	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	18558349	18558349	T	A	SNP	LOC642458	XR_016116	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
OR4N2	390429	genome.wustl.edu	36	14	19366355	19366355	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19366355	19366355	A	T	SNP	OR4N2	NM_001004723	human	genbank	54_36p	1	provisional	missense	c.908	p.N303I	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K2	390431	genome.wustl.edu	36	14	19415120	19415120	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19415120	19415120	T	A	SNP	OR4K2	NM_001005501	human	genbank	54_36p	1	provisional	missense	c.854	p.I285K	0.12	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K2	390431	genome.wustl.edu	36	14	19415193	19415193	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19415193	19415193	T	A	SNP	OR4K2	NM_001005501	human	genbank	54_36p	1	provisional	missense	c.927	p.N309K	0	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR4K1	79544	genome.wustl.edu	36	14	19473741	19473741	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19473741	19473741	T	C	SNP	OR4K1	NM_001004063	human	genbank	54_36p	1	provisional	missense	c.76	p.F26L	0.15	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4L1	122742	genome.wustl.edu	36	14	19598093	19598093	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19598093	19598093	T	C	SNP	OR4L1	NM_001004717	human	genbank	54_36p	1	provisional	missense	c.50	p.F17S	0.23	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4L1	122742	genome.wustl.edu	36	14	19598948	19598948	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19598948	19598948	G	T	SNP	OR4L1	NM_001004717	human	genbank	54_36p	1	provisional	missense	c.905	p.R302L	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR4N5	390437	genome.wustl.edu	36	14	19682585	19682585	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19682585	19682585	C	A	SNP	OR4N5	NM_001004724	human	genbank	54_36p	1	provisional	missense	c.851	p.P284H	0.92	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR11H6	122748	genome.wustl.edu	36	14	19761717	19761717	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19761717	19761717	T	G	SNP	OR11H6	NM_001004480	human	genbank	54_36p	1	provisional	missense	c.9	p.F3L	0	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR11H6	122748	genome.wustl.edu	36	14	19762235	19762235	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19762235	19762235	T	A	SNP	OR11H6	NM_001004480	human	genbank	54_36p	1	provisional	missense	c.527	p.V176D	0.09	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR11H4	390442	genome.wustl.edu	36	14	19781045	19781045	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19781045	19781045	C	T	SNP	OR11H4	NM_001004479	human	genbank	54_36p	1	provisional	silent	c.255	p.S85	0.71	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CCNB1IP1	57820	genome.wustl.edu	36	14	19851594	19851594	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19851594	19851594	A	T	SNP	CCNB1IP1	NM_021178	human	genbank	54_36p	-1	validated	missense	c.504	p.N168K	1	NULL	PatternScan_ZF_RING_1	-	no_errors
PARP2	10038	genome.wustl.edu	36	14	19890252	19890252	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19890252	19890252	A	C	SNP	PARP2	NM_005484	human	genbank	54_36p	1	reviewed	missense	c.545	p.D182A	1	"HMMPfam_WGR,HMMSmart_SM00773"	"HMMPfam_WGR,HMMSmart_SM00773,HMMPfam_PARP_reg,superfamily_Domain of poly(ADP-ribose) polymerase,HMMPfam_PARP,superfamily_ADP-ribosylation,PatternScan_CASPASE_HIS,PatternScan_CPSASE_2"	-	no_errors
APEX1	328	genome.wustl.edu	36	14	19995128	19995128	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	19995128	19995128	G	A	SNP	APEX1	NM_001641	human	genbank	54_36p	1	reviewed	missense	c.578	p.R193H	1	"superfamily_DNase I-like,HMMPfam_Exo_endo_phos"	"superfamily_DNase I-like,HMMPfam_Exo_endo_phos,PatternScan_AP_NUCLEASE_F1_1,PatternScan_AP_NUCLEASE_F1_2,PatternScan_AP_NUCLEASE_F1_3"	-	no_errors
PNP	4860	genome.wustl.edu	36	14	20013201	20013201	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20013201	20013201	A	T	SNP	NP	NM_000270	human	genbank	54_36p	1	reviewed	missense	c.602	p.E201V	1	"superfamily_SSF53167,HMMPfam_PNP_UDP_1"	"superfamily_SSF53167,HMMPfam_PNP_UDP_1,PatternScan_PNP_MTAP_2"	-	no_errors
RNASE11	122651	genome.wustl.edu	36	14	20121957	20121957	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20121957	20121957	T	A	SNP	RNASE11	NM_145250	human	genbank	54_36p	-1	validated	missense	c.517	p.S173C	0	superfamily_RNase A-like	superfamily_RNase A-like	-	no_errors
RNASE12	493901	genome.wustl.edu	36	14	20128389	20128389	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20128389	20128389	C	T	SNP	RNASE12	NM_001024822	human	genbank	54_36p	-1	provisional	missense	c.334	p.E112K	0	"superfamily_RNaseA,HMMPfam_RnaseA"	"superfamily_RNaseA,HMMPfam_RnaseA"	-	no_errors
RNASE2	6036	genome.wustl.edu	36	14	20493879	20493879	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20493879	20493879	T	C	SNP	RNASE2	NM_002934	human	genbank	54_36p	1	validated	missense	c.109	p.W37R	0.95	"superfamily_RNaseA,HMMSmart_RNAse_Pc,HMMPfam_RnaseA"	"superfamily_RNaseA,HMMSmart_RNAse_Pc,HMMPfam_RnaseA,PatternScan_RNASE_PANCREATIC"	-	no_errors
METT11D1	64745	genome.wustl.edu	36	14	20534531	20534531	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20534531	20534531	G	A	SNP	METT11D1	NM_001029991	human	genbank	54_36p	1	validated	silent	c.1086	p.K362	0.5	HMMPfam_Rsm22	"HMMPfam_Rsm22,superfamily_SSF53335"	-	no_errors
RPGRIP1	57096	genome.wustl.edu	36	14	20832711	20832711	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20832711	20832711	A	G	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	1	reviewed	missense	c.121	p.M41V	0.9	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
CHD8	57680	genome.wustl.edu	36	14	20940373	20940373	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20940373	20940373	G	C	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.3007	p.L1003V	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
CHD8	57680	genome.wustl.edu	36	14	20943240	20943240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	20943240	20943240	C	T	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.2438	p.R813H	1	HMMPfam_SNF2_N	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
OR4E2	26686	genome.wustl.edu	36	14	21204039	21204039	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	21204039	21204039	C	G	SNP	OR4E2	NM_001001912	human	genbank	54_36p	1	validated	silent	c.903	p.L301	0.69	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TRA@	6955	genome.wustl.edu	36	14	22001981	22001981	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22001981	22001981	A	C	SNP	TRA@	ENST00000390477	human	ensembl	54_36p	1	known	missense	c.218	p.Q73P	0.91	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C14orf93	60686	genome.wustl.edu	36	14	22535179	22535179	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22535179	22535179	G	C	SNP	C14orf93	NM_021944	human	genbank	54_36p	-1	validated	missense	c.736	p.L246V	1	NULL	NULL	-	no_errors
PSMB5	5693	genome.wustl.edu	36	14	22573899	22573899	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22573899	22573899	A	T	SNP	PSMB5	NM_002797	human	genbank	54_36p	-1	reviewed	missense	c.32	p.L11Q	0.98	NULL	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
ACIN1	22985	genome.wustl.edu	36	14	22619588	22619588	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22619588	22619588	G	C	SNP	ACIN1	NM_014977	human	genbank	54_36p	-1	validated	missense	c.970	p.P324A	0.94	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_RNA-binding domain RBD"	-	no_errors
CEBPE	1053	genome.wustl.edu	36	14	22658083	22658083	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22658083	22658083	A	T	SNP	CEBPE	NM_001805	human	genbank	54_36p	-1	reviewed	missense	c.58	p.F20I	1	NULL	"PatternScan_BZIP_BASIC,HMMSmart_BRLZ,HMMPfam_bZIP_2"	-	no_errors
PABPN1	8106	genome.wustl.edu	36	14	22861342	22861342	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22861342	22861342	A	G	SNP	PABPN1	NM_004643	human	genbank	54_36p	1	reviewed	missense	c.464	p.N155S	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
PABPN1	8106	genome.wustl.edu	36	14	22863304	22863304	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22863304	22863304	G	A	SNP	PABPN1	NM_004643	human	genbank	54_36p	1	reviewed	missense	c.847	p.G283S	1	superfamily_RNA-binding domain RBD	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
IL25	64806	genome.wustl.edu	36	14	22914673	22914673	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22914673	22914673	G	A	SNP	IL25	NM_022789	human	genbank	54_36p	1	reviewed	splice_site	c.279-1	e2-1	1	-	-	-	no_errors
MYH6	4624	genome.wustl.edu	36	14	22926590	22926590	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22926590	22926590	C	G	SNP	MYH6	NM_002471	human	genbank	54_36p	-1	validated	silent	c.4638	p.L1546	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
MYH7	4625	genome.wustl.edu	36	14	22957352	22957352	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	22957352	22957352	C	T	SNP	MYH7	NM_000257	human	genbank	54_36p	-1	reviewed	missense	c.4076	p.R1359H	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
DHRS4	10901	genome.wustl.edu	36	14	23494095	23494095	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23494095	23494095	C	T	SNP	DHRS4	NM_021004	human	genbank	54_36p	1	validated	missense	c.140	p.A47V	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
DHRS4L2	317749	genome.wustl.edu	36	14	23529369	23529369	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23529369	23529369	T	A	SNP	DHRS4L2	NM_198083	human	genbank	54_36p	1	validated	missense	c.267	p.H89Q	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
CPNE6	9362	genome.wustl.edu	36	14	23616333	23616333	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23616333	23616333	C	G	SNP	CPNE6	NM_006032	human	genbank	54_36p	1	reviewed	missense	c.1430	p.S477C	0.99	"superfamily_vWA-like,HMMSmart_SM00327"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine"	-	no_errors
PSME1	5720	genome.wustl.edu	36	14	23677155	23677155	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23677155	23677155	G	T	SNP	PSME1	NM_176783	human	genbank	54_36p	1	reviewed	missense	c.448	p.V150L	1	"superfamily_Prot_act_regA,HMMPfam_PA28_beta"	"superfamily_Prot_act_regA,HMMPfam_PA28_alpha,HMMPfam_PA28_beta"	-	no_errors
IRF9	10379	genome.wustl.edu	36	14	23702488	23702488	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23702488	23702488	G	T	SNP	IRF9	NM_006084	human	genbank	54_36p	1	validated	missense	c.426	p.R142S	0.01	NULL	"HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3"	-	no_errors
TM9SF1	10548	genome.wustl.edu	36	14	23732000	23732000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23732000	23732000	G	A	SNP	TM9SF1	NM_006405	human	genbank	54_36p	-1	validated	missense	c.661	p.R221C	1	HMMPfam_EMP70	HMMPfam_EMP70	-	no_errors
NYNRIN	57523	genome.wustl.edu	36	14	23947546	23947546	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	23947546	23947546	C	T	SNP	KIAA1305	NM_025081	human	genbank	54_36p	1	validated	missense	c.830	p.P277L	0.47	NULL	"superfamily_DNA/RNA polymerases,superfamily_Ribonuclease H-like"	-	no_errors
CTSG	1511	genome.wustl.edu	36	14	24112714	24112714	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	24112714	24112714	T	A	SNP	CTSG	NM_001911	human	genbank	54_36p	-1	reviewed	missense	c.737	p.K246I	0	NULL	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
G2E3	55632	genome.wustl.edu	36	14	30128370	30128374	+	Frame_Shift_Del	DEL	AAAGA	AAAGA	-	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	AAAGA	AAAGA	AAAGA	-	AAAGA	AAAGA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	30128370	30128374	AAAGA	-	DEL	G2E3	NM_017769	human	genbank	54_36p	1	validated	frame_shift_del	c.166_170	p.K56fs	0.997:1.000:1.000:1.000:1.000	NULL	"HMMSmart_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING,superfamily_HECT,HMMPfam_HECT"	"(deletion:cds_exon[30128340,30128441])"	no_errors
HEATR5A	25938	genome.wustl.edu	36	14	30926116	30926116	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	30926116	30926116	C	G	SNP	HEATR5A	NM_015473	human	genbank	54_36p	-1	validated	missense	c.271	p.D91H	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
ARHGAP5	394	genome.wustl.edu	36	14	31630296	31630296	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	31630296	31630296	G	T	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	1	reviewed	missense	c.670	p.V224L	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP5	394	genome.wustl.edu	36	14	31631046	31631046	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	31631046	31631046	G	A	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	1	reviewed	missense	c.1420	p.V474I	1	"HMMSmart_SM00441,superfamily_FF domain"	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AKAP6	9472	genome.wustl.edu	36	14	32363306	32363306	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	32363306	32363306	C	G	SNP	AKAP6	NM_004274	human	genbank	54_36p	1	reviewed	missense	c.6536	p.S2179C	0	NULL	"HMMSmart_SM00150,superfamily_Spectrin repeat,PatternScan_PFKB_KINASES_2"	-	no_errors
EAPP	55837	genome.wustl.edu	36	14	34068321	34068321	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	34068321	34068321	C	G	SNP	EAPP	NM_018453	human	genbank	54_36p	-1	reviewed	missense	c.464	p.R155T	1	HMMPfam_Eapp_C	HMMPfam_Eapp_C	-	no_errors
BAZ1A	11177	genome.wustl.edu	36	14	34401181	34401181	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	34401181	34401181	T	A	SNP	BAZ1A	NM_013448	human	genbank	54_36p	-1	validated	missense	c.212	p.E71V	1	HMMPfam_WAC_Acf1_DNA_bd	"HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
PPP2R3C	55012	genome.wustl.edu	36	14	34634084	34634084	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	34634084	34634084	G	A	SNP	PPP2R3C	NM_017917	human	genbank	54_36p	-1	provisional	missense	c.896	p.S299L	1	superfamily_EF-hand	"superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
RALGAPA1	253959	genome.wustl.edu	36	14	35078573	35078573	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	35078573	35078573	T	C	SNP	GARNL1	NM_194301	human	genbank	54_36p	-1	provisional	missense	c.6178	p.M2060V	1	NULL	"superfamily_SSF111347,HMMPfam_Rap_GAP"	-	no_errors
RALGAPA1	253959	genome.wustl.edu	36	14	35166288	35166288	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	35166288	35166288	C	T	SNP	GARNL1	NM_194301	human	genbank	54_36p	-1	provisional	missense	c.5098	p.G1700R	1	superfamily_SSF111347	"HMMPfam_Rap_GAP,superfamily_SSF111347"	-	no_errors
PAX9	5083	genome.wustl.edu	36	14	36202291	36202291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	36202291	36202291	C	T	SNP	PAX9	NM_006194	human	genbank	54_36p	1	validated	missense	c.443	p.P148L	1	NULL	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1"	-	no_errors
CLEC14A	161198	genome.wustl.edu	36	14	37793534	37793534	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	37793534	37793534	T	C	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	missense	c.1445	p.E482G	0	NULL	"PatternScan_EGF_1,PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMSmart_EGF,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
CLEC14A	161198	genome.wustl.edu	36	14	37794218	37794218	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	37794218	37794218	C	A	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	missense	c.761	p.G254V	0.01	"HMMSmart_EGF,superfamily_SSF57196"	"PatternScan_ASX_HYDROXYL,HMMSmart_CLECT,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196"	-	no_errors
SEC23A	10484	genome.wustl.edu	36	14	38581817	38581817	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	38581817	38581817	A	G	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	missense	c.1910	p.L637P	1	"superfamily_SSF82754,HMMPfam_Gelsolin"	"superfamily_SSF81995,superfamily_Znf_Sec23_Sec24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_SSF53300,HMMPfam_Sec23_BS,superfamily_Sec23_helical,HMMPfam_Sec23_helical,superfamily_SSF82754,HMMPfam_Gelsolin"	-	no_errors
LRFN5	145581	genome.wustl.edu	36	14	41430900	41430900	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	41430900	41430900	G	C	SNP	LRFN5	NM_152447	human	genbank	54_36p	1	validated	missense	c.2083	p.A695P	1	NULL	"HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like"	-	no_errors
FSCB	84075	genome.wustl.edu	36	14	44043813	44043813	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	44043813	44043813	C	G	SNP	FSCB	NM_032135	human	genbank	54_36p	-1	validated	missense	c.2128	p.E710Q	0.01	NULL	NULL	-	no_errors
RPL10L	140801	genome.wustl.edu	36	14	46190488	46190488	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	46190488	46190488	C	T	SNP	RPL10L	NM_080746	human	genbank	54_36p	-1	reviewed	missense	c.202	p.A68T	1	"superfamily_Ribosomal_L10e/L16,HMMPfam_Ribosomal_L16"	"superfamily_Ribosomal_L10e/L16,HMMPfam_Ribosomal_L16,PatternScan_RIBOSOMAL_L10E"	-	no_errors
SOS2	6655	genome.wustl.edu	36	14	49655211	49655211	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49655211	49655211	C	A	SNP	SOS2	NM_006939	human	genbank	54_36p	-1	validated	silent	c.3600	p.L1200	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SOS2	6655	genome.wustl.edu	36	14	49693585	49693585	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49693585	49693585	C	G	SNP	SOS2	NM_006939	human	genbank	54_36p	-1	validated	missense	c.1939	p.E647Q	1	"HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP5S	27109	genome.wustl.edu	36	14	49862185	49862185	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49862185	49862185	G	A	SNP	ATP5S	NM_001003803	human	genbank	54_36p	1	reviewed	silent	c.642	p.L214	0.19	NULL	superfamily_RNI-like	-	no_errors
ATP5S	27109	genome.wustl.edu	36	14	49868648	49868648	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	49868648	49868648	G	T	SNP	ATP5S	ENST00000358473	human	ensembl	54_36p	1	known	silent	c.645	p.L215	0	NULL	NULL	-	no_errors
NIN	51199	genome.wustl.edu	36	14	50291090	50291090	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	50291090	50291090	C	T	SNP	NIN	NM_020921	human	genbank	54_36p	-1	reviewed	missense	c.4675	p.E1559K	0.99	NULL	"superfamily_EF-hand,HMMPfam_efhand"	-	no_errors
FRMD6	122786	genome.wustl.edu	36	14	51264265	51264265	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	51264265	51264265	A	G	SNP	FRMD6	NM_001042481	human	genbank	54_36p	1	validated	missense	c.1613	p.D538G	1	NULL	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_SSF50729,HMMPfam_FERM_C"	-	no_errors
NID2	22795	genome.wustl.edu	36	14	51604632	51604632	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	51604632	51604632	C	G	SNP	NID2	NM_007361	human	genbank	54_36p	-1	validated	splice_site	c.229-1	e2-1	1	-	-	-	no_errors
PTGDR	5729	genome.wustl.edu	36	14	51804674	51804674	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	51804674	51804674	G	T	SNP	PTGDR	NM_000953	human	genbank	54_36p	1	reviewed	missense	c.392	p.W131L	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
DLGAP5	9787	genome.wustl.edu	36	14	54712398	54712398	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	54712398	54712398	A	C	SNP	DLGAP5	NM_014750	human	genbank	54_36p	-1	provisional	missense	c.1141	p.C381G	0.01	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
FBXO34	55030	genome.wustl.edu	36	14	54888821	54888821	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	54888821	54888821	T	A	SNP	FBXO34	NM_017943	human	genbank	54_36p	1	validated	missense	c.1960	p.Y654N	1	NULL	"superfamily_SSF81383,HMMSmart_FBOX,HMMPfam_F-box"	-	no_errors
OTX2	5015	genome.wustl.edu	36	14	56338774	56338774	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	56338774	56338774	T	G	SNP	OTX2	NM_021728	human	genbank	54_36p	-1	reviewed	missense	c.326	p.Q109P	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_TF_Otx"	-	no_errors
EXOC5	10640	genome.wustl.edu	36	14	56768188	56768188	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	56768188	56768188	T	C	SNP	EXOC5	NM_006544	human	genbank	54_36p	-1	reviewed	splice_site	c.939-2	e11-2	1	-	-	-	no_errors
SLC35F4	341880	genome.wustl.edu	36	14	57133217	57133217	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	57133217	57133217	G	T	SNP	SLC35F4	NM_001080455	human	genbank	54_36p	-1	inferred	nonsense	c.152	p.S51*	0	NULL	"superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_DUF6"	-	no_errors
ARID4A	5926	genome.wustl.edu	36	14	57884344	57884344	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	57884344	57884344	C	G	SNP	ARID4A	NM_002892	human	genbank	54_36p	1	reviewed	missense	c.1399	p.P467A	1	NULL	"HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00298"	-	no_errors
ARID4A	5926	genome.wustl.edu	36	14	57901182	57901182	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	57901182	57901182	A	T	SNP	ARID4A	NM_002892	human	genbank	54_36p	1	reviewed	silent	c.2622	p.G874	0.95	NULL	"HMMSmart_SM00298,HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00333,HMMPfam_RBB1NT"	-	no_errors
C14orf149	112849	genome.wustl.edu	36	14	59015712	59015712	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59015712	59015712	C	G	SNP	C14orf149	NM_144581	human	genbank	54_36p	-1	provisional	missense	c.619	p.A207P	1	"superfamily_Diaminopimelate epimerase-like,HMMPfam_Pro_racemase"	"superfamily_Diaminopimelate epimerase-like,HMMPfam_Pro_racemase"	-	no_errors
RTN1	6252	genome.wustl.edu	36	14	59263426	59263426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59263426	59263426	C	T	SNP	RTN1	NM_021136	human	genbank	54_36p	-1	reviewed	missense	c.1729	p.A577T	0	NULL	"HMMPfam_Reticulon,PatternScan_HISTONE_H4"	-	no_errors
RTN1	6252	genome.wustl.edu	36	14	59282307	59282307	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59282307	59282307	G	T	SNP	RTN1	NM_021136	human	genbank	54_36p	-1	reviewed	missense	c.887	p.T296N	0.25	NULL	"HMMPfam_Reticulon,PatternScan_HISTONE_H4"	-	no_errors
DHRS7	51635	genome.wustl.edu	36	14	59685860	59685860	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59685860	59685860	C	T	SNP	DHRS7	ENST00000360557	human	ensembl	54_36p	-1	known	nonsense	c.932	p.W311*	0.04	NULL	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
C14orf39	317761	genome.wustl.edu	36	14	59973399	59973399	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59973399	59973399	G	C	SNP	C14orf39	NM_174978	human	genbank	54_36p	-1	validated	missense	c.1681	p.Q561E	1	NULL	NULL	-	no_errors
C14orf39	317761	genome.wustl.edu	36	14	59973446	59973446	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	59973446	59973446	G	A	SNP	C14orf39	NM_174978	human	genbank	54_36p	-1	validated	missense	c.1634	p.T545I	1	NULL	NULL	-	no_errors
SLC38A6	145389	genome.wustl.edu	36	14	60615398	60615398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	14	60615398	60615398	G	C	SNP	SLC38A6	ENST00000354886	human	ensembl	54_36p	1	known	missense	c.1408	p.G470R	0	NULL	HMMPfam_Aa_trans	-	no_errors
KCNH5	27133	genome.wustl.edu	36	14	62486626	62486626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	62486626	62486626	C	T	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	silent	c.1347	p.S449	0.56	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
GPHB5	122876	genome.wustl.edu	36	14	62849570	62849570	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	62849570	62849570	T	C	SNP	GPHB5	NM_145171	human	genbank	54_36p	-1	validated	missense	c.217	p.N73D	1	NULL	NULL	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63527028	63527028	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	63527028	63527028	A	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	silent	c.2460	p.K820	0.99	NULL	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH"	-	no_errors
SYNE2	23224	genome.wustl.edu	36	14	63750739	63750739	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	63750739	63750739	T	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	silent	c.19131	p.S6377	0.04	NULL	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
MTHFD1	4522	genome.wustl.edu	36	14	63956295	63956295	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	63956295	63956295	G	C	SNP	MTHFD1	NM_005956	human	genbank	54_36p	1	reviewed	missense	c.626	p.G209A	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C"	###############################################################################################################################################################################################################################################################	-	no_errors
ZBTB1	22890	genome.wustl.edu	36	14	64059932	64059932	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64059932	64059932	A	T	SNP	ZBTB1	ENST00000394712	human	ensembl	54_36p	1	known	missense	c.1957	p.M653L	1	HMMSmart_ZnF_C2H2	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SPTB	6710	genome.wustl.edu	36	14	64309076	64309076	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64309076	64309076	C	T	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.5528	p.R1843Q	0.99	"HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC"	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
GPX2	2877	genome.wustl.edu	36	14	64476019	64476019	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64476019	64476019	G	C	SNP	GPX2	NM_002083	human	genbank	54_36p	-1	reviewed	silent	c.513	p.R171	1	superfamily_Thioredoxin-like	"superfamily_Thioredoxin-like,HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2"	-	pseudogene
RAB15	376267	genome.wustl.edu	36	14	64486834	64486834	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	64486834	64486834	C	A	SNP	RAB15	NM_198686	human	genbank	54_36p	-1	validated	missense	c.507	p.R169S	1	NULL	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1"	-	no_errors
GPHN	10243	genome.wustl.edu	36	14	66595242	66595242	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66595242	66595242	T	A	SNP	GPHN	NM_020806	human	genbank	54_36p	1	reviewed	missense	c.1130	p.I377N	1	"superfamily_MoeA_N,HMMPfam_MoeA_N"	"superfamily_MoCF_biosynth,HMMPfam_MoCF_biosynth,PatternScan_MOCF_BIOSYNTHESIS_1,superfamily_MoeA_N,HMMPfam_MoeA_N,PatternScan_MOCF_BIOSYNTHESIS_2,superfamily_MoeA_C,HMMPfam_MoeA_C"	-	no_errors
GPHN	10243	genome.wustl.edu	36	14	66705481	66705481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66705481	66705481	C	T	SNP	GPHN	NM_020806	human	genbank	54_36p	1	reviewed	missense	c.2054	p.P685L	1	superfamily_MoCF_biosynth	"HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth,HMMPfam_MoeA_N,superfamily_MoeA_N,HMMPfam_MoeA_C,superfamily_MoeA_C,PatternScan_MOCF_BIOSYNTHESIS_1,PatternScan_MOCF_BIOSYNTHESIS_2"	-	no_errors
MPP5	64398	genome.wustl.edu	36	14	66860274	66860274	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66860274	66860274	A	T	SNP	MPP5	NM_022474	human	genbank	54_36p	1	validated	missense	c.1843	p.N615Y	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP6V1D	51382	genome.wustl.edu	36	14	66875111	66875111	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66875111	66875111	C	T	SNP	ATP6V1D	NM_015994	human	genbank	54_36p	-1	reviewed	missense	c.724	p.E242K	1	NULL	HMMPfam_ATP-synt_D	-	no_errors
PLEK2	26499	genome.wustl.edu	36	14	66931898	66931898	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	66931898	66931898	G	A	SNP	PLEK2	NM_016445	human	genbank	54_36p	-1	provisional	silent	c.363	p.F121	1	superfamily_SSF50729	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP"	-	no_errors
ZFYVE26	23503	genome.wustl.edu	36	14	67292496	67292496	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	67292496	67292496	C	A	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.6708	p.K2236N	0.75	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
DCAF5	8816	genome.wustl.edu	36	14	68591701	68591701	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	68591701	68591701	G	T	SNP	WDR22	NM_003861	human	genbank	54_36p	-1	validated	silent	c.1455	p.P485	1	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like"	-	no_errors
KIAA0247	9766	genome.wustl.edu	36	14	69247448	69247448	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	69247448	69247448	G	A	SNP	KIAA0247	NM_014734	human	genbank	54_36p	1	validated	silent	c.911	p.*304	1	NULL	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
SLC8A3	6547	genome.wustl.edu	36	14	69588460	69588460	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	69588460	69588460	C	A	SNP	SLC8A3	NM_183002	human	genbank	54_36p	-1	reviewed	missense	c.2031	p.K677N	1	NULL	"HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_Na_Ca_ex"	-	no_errors
SIPA1L1	26037	genome.wustl.edu	36	14	71125433	71125433	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	71125433	71125433	C	G	SNP	SIPA1L1	NM_015556	human	genbank	54_36p	1	provisional	missense	c.1091	p.S364C	0.99	NULL	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
SIPA1L1	26037	genome.wustl.edu	36	14	71155239	71155239	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	71155239	71155239	A	G	SNP	SIPA1L1	NM_015556	human	genbank	54_36p	1	provisional	missense	c.1511	p.Y504C	1	superfamily_Rap/Ran-GAP (Pfam 02145)	"HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Rap/Ran-GAP (Pfam 02145)"	-	no_errors
PAPLN	89932	genome.wustl.edu	36	14	72787459	72787459	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	72787459	72787459	C	A	SNP	PAPLN	NM_173462	human	genbank	54_36p	1	validated	missense	c.557	p.A186E	0.89	HMMPfam_ADAM_spacer1	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMSmart_KU,HMMPfam_Kunitz_BPTI,superfamily_Prot_inh_Kunz-m,PatternScan_BPTI_KUNITZ_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC"	-	no_errors
NUMB	8650	genome.wustl.edu	36	14	72813133	72813133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	72813133	72813133	G	A	SNP	NUMB	NM_001005743	human	genbank	54_36p	-1	reviewed	missense	c.1862	p.A621V	1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,HMMPfam_NumbF"	-	no_errors
PNMA1	9240	genome.wustl.edu	36	14	73249466	73249466	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	73249466	73249466	G	A	SNP	PNMA1	NM_006029	human	genbank	54_36p	-1	validated	silent	c.630	p.A210	0.33	NULL	NULL	-	no_errors
C14orf43	91748	genome.wustl.edu	36	14	73275140	73275140	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	73275140	73275140	C	G	SNP	C14orf43	NM_001043318	human	genbank	54_36p	-1	validated	missense	c.1325	p.C442S	0.94	NULL	"HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	-	no_errors
VSX2	338917	genome.wustl.edu	36	14	73781670	73781670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	73781670	73781670	G	A	SNP	VSX2	NM_182894	human	genbank	54_36p	1	validated	missense	c.505	p.E169K	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
KIAA0317	9870	genome.wustl.edu	36	14	74219932	74219932	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	74219932	74219932	G	A	SNP	KIAA0317	NM_001039479	human	genbank	54_36p	-1	validated	missense	c.301	p.H101Y	1	superfamily_E set domains	"superfamily_E set domains,HMMPfam_Filamin,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
RPS6KL1	83694	genome.wustl.edu	36	14	74443539	74443539	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	74443539	74443539	T	C	SNP	RPS6KL1	NM_031464	human	genbank	54_36p	-1	validated	silent	c.1488	p.E496	0.99	"superfamily_Kinase_like,HMMPfam_Pkinase"	"HMMSmart_MIT,HMMPfam_MIT,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
FOS	2353	genome.wustl.edu	36	14	74817470	74817470	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	74817470	74817470	A	C	SNP	FOS	NM_005252	human	genbank	54_36p	1	reviewed	missense	c.733	p.N245H	0	NULL	"HMMSmart_SM00338,HMMPfam_bZIP_2,PatternScan_BZIP_BASIC"	-	no_errors
BATF	10538	genome.wustl.edu	36	14	75061284	75061284	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	75061284	75061284	G	C	SNP	BATF	NM_006399	human	genbank	54_36p	1	reviewed	silent	c.168	p.L56	1	"HMMPfam_bZIP_1,HMMSmart_BRLZ"	"HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC"	-	no_errors
TTLL5	23093	genome.wustl.edu	36	14	75319416	75319416	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	75319416	75319416	C	T	SNP	TTLL5	NM_015072	human	genbank	54_36p	1	validated	missense	c.2776	p.P926S	0.36	NULL	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
ESRRB	2103	genome.wustl.edu	36	14	75975583	75975583	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	75975583	75975583	T	C	SNP	ESRRB	NM_004452	human	genbank	54_36p	1	reviewed	missense	c.134	p.F45S	1	NULL	"superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
SNW1	22938	genome.wustl.edu	36	14	77273125	77273125	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	77273125	77273125	G	C	SNP	SNW1	NM_012245	human	genbank	54_36p	-1	reviewed	missense	c.580	p.Q194E	1	HMMPfam_SKIP_SNW	HMMPfam_SKIP_SNW	-	no_errors
C14orf178	283579	genome.wustl.edu	36	14	77305763	77305763	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	77305763	77305763	G	T	SNP	C14orf178	NM_174943	human	genbank	54_36p	1	predicted	missense	c.358	p.A120S	0	NULL	NULL	-	no_errors
NRXN3	9369	genome.wustl.edu	36	14	77779249	77779249	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	77779249	77779249	C	G	SNP	NRXN3	ENST00000330071	human	ensembl	54_36p	1	known	silent	c.60	p.S20	0.46	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_SM00294"	-	no_errors
TSHR	7253	genome.wustl.edu	36	14	80679090	80679090	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	80679090	80679090	G	C	SNP	TSHR	NM_000369	human	genbank	54_36p	1	reviewed	missense	c.935	p.R312T	0.96	superfamily_L domain-like	"superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SEL1L	6400	genome.wustl.edu	36	14	81034573	81034573	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	81034573	81034573	C	T	SNP	SEL1L	NM_005065	human	genbank	54_36p	-1	validated	missense	c.910	p.G304S	1	"superfamily_HCP-like,HMMPfam_Sel1,HMMSmart_SM00671"	"superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like"	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85158757	85158757	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	85158757	85158757	G	A	SNP	FLRT2	NM_013231	human	genbank	54_36p	1	reviewed	silent	c.1146	p.Q382	0	NULL	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85159438	85159438	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	85159438	85159438	C	T	SNP	FLRT2	NM_013231	human	genbank	54_36p	1	reviewed	silent	c.1827	p.I609	1	NULL	"HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF52058"	-	no_errors
KCNK10	54207	genome.wustl.edu	36	14	87799467	87799467	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	87799467	87799467	A	C	SNP	KCNK10	NM_138317	human	genbank	54_36p	-1	reviewed	silent	c.234	p.V78	1	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	-	no_errors
SPATA7	55812	genome.wustl.edu	36	14	87952878	87952878	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	87952878	87952878	T	G	SNP	SPATA7	NM_018418	human	genbank	54_36p	1	validated	silent	c.309	p.T103	0.15	NULL	NULL	-	no_errors
EML5	161436	genome.wustl.edu	36	14	88275019	88275019	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	88275019	88275019	T	C	SNP	EML5	NM_183387	human	genbank	54_36p	-1	validated	silent	c.804	p.P268	1	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1"	-	no_errors
FOXN3	1112	genome.wustl.edu	36	14	88698683	88698683	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	88698683	88698683	G	A	SNP	FOXN3	NM_001085471	human	genbank	54_36p	-1	reviewed	missense	c.1301	p.T434I	1	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
TDP1	55775	genome.wustl.edu	36	14	89499549	89499552	+	Frame_Shift_Del	DEL	AGAA	AGAA	-	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	AGAA	AGAA	AGAA	-	AGAA	AGAA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	89499549	89499552	AGAA	-	DEL	TDP1	NM_001008744	human	genbank	54_36p	1	reviewed	frame_shift_del	c.338_341	p.K114fs	0.643:0.282:0.061:0.048	NULL	"superfamily_SSF56024,HMMPfam_Tyr-DNA_phospho"	"(deletion:cds_exon[89499212,89499770])"	no_errors
C14orf102	55051	genome.wustl.edu	36	14	89854202	89854202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	89854202	89854202	A	C	SNP	C14orf102	NM_017970	human	genbank	54_36p	-1	validated	missense	c.73	p.W25G	1	NULL	"superfamily_Prenyl_trans,HMMPfam_DUF1740"	-	no_errors
TTC7B	145567	genome.wustl.edu	36	14	90266244	90266244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90266244	90266244	G	T	SNP	TTC7B	NM_001010854	human	genbank	54_36p	-1	provisional	missense	c.626	p.P209H	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
RPS6KA5	9252	genome.wustl.edu	36	14	90456321	90456321	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90456321	90456321	G	C	SNP	RPS6KA5	NM_004755	human	genbank	54_36p	-1	validated	missense	c.788	p.S263C	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
CCDC88C	440193	genome.wustl.edu	36	14	90841994	90841994	+	Silent	SNP	C	G	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90841994	90841994	C	G	SNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	silent	c.3225	p.L1075	1	NULL	superfamily_Prefoldin	-	no_errors
CCDC88C	440193	genome.wustl.edu	36	14	90849506	90849506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	90849506	90849506	G	C	SNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	missense	c.2407	p.L803V	0.89	NULL	superfamily_Prefoldin	-	no_errors
SMEK1	55671	genome.wustl.edu	36	14	91001386	91001386	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91001386	91001386	C	A	SNP	SMEK1	NM_032560	human	genbank	54_36p	-1	validated	missense	c.1752	p.M584I	1	NULL	"superfamily_SSF50729,HMMPfam_DUF625,superfamily_ARM-type_fold"	-	no_errors
FBLN5	10516	genome.wustl.edu	36	14	91417405	91417405	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91417405	91417405	G	C	SNP	FBLN5	NM_006329	human	genbank	54_36p	-1	reviewed	missense	c.973	p.L325V	1	"HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin"	"superfamily_EGF/Laminin,HMMPfam_EGF_CA,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
TRIP11	9321	genome.wustl.edu	36	14	91510766	91510766	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91510766	91510766	G	C	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	silent	c.5532	p.P1844	1	NULL	NULL	-	no_errors
TRIP11	9321	genome.wustl.edu	36	14	91510767	91510767	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91510767	91510767	G	C	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	missense	c.5531	p.P1844R	1	NULL	NULL	-	no_errors
TRIP11	9321	genome.wustl.edu	36	14	91542437	91542437	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91542437	91542437	G	A	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	missense	c.1636	p.L546F	0.32	NULL	NULL	-	no_errors
CPSF2	53981	genome.wustl.edu	36	14	91697797	91697797	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	91697797	91697797	T	G	SNP	CPSF2	NM_017437	human	genbank	54_36p	1	validated	missense	c.2305	p.Y769D	1	NULL	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B,HMMPfam_RMMBL"	-	no_errors
SLC24A4	123041	genome.wustl.edu	36	14	92022774	92022774	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	92022774	92022774	C	T	SNP	SLC24A4	NM_153646	human	genbank	54_36p	1	validated	silent	c.1383	p.I461	1	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
KIAA1409	57578	genome.wustl.edu	36	14	93149139	93149139	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93149139	93149139	G	A	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	missense	c.3467	p.R1156H	1	NULL	NULL	-	no_errors
KIAA1409	57578	genome.wustl.edu	36	14	93190066	93190066	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93190066	93190066	C	T	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	missense	c.5810	p.S1937L	1	NULL	NULL	-	no_errors
OTUB2	78990	genome.wustl.edu	36	14	93580777	93580777	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	14	93580777	93580777	G	T	SNP	OTUB2	NM_023112	human	genbank	54_36p	1	validated	silent	c.396	p.V132	1	"HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases"	"HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases"	-	no_errors
DDX24	57062	genome.wustl.edu	36	14	93598574	93598574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93598574	93598574	C	G	SNP	DDX24	NM_020414	human	genbank	54_36p	-1	reviewed	missense	c.865	p.G289R	0	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
SERPINA10	51156	genome.wustl.edu	36	14	93820080	93820080	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	93820080	93820080	C	A	SNP	SERPINA10	NM_001100607	human	genbank	54_36p	-1	validated	missense	c.1310	p.R437M	1	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"PatternScan_SERPIN,superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	-	no_errors
SERPINA5	5104	genome.wustl.edu	36	14	94128255	94128255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	94128255	94128255	G	A	SNP	SERPINA5	NM_000624	human	genbank	54_36p	1	validated	missense	c.1147	p.V383M	0	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
DICER1	23405	genome.wustl.edu	36	14	94644433	94644433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	94644433	94644433	G	A	SNP	DICER1	NM_030621	human	genbank	54_36p	-1	reviewed	missense	c.2417	p.T806M	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TCL1B	9623	genome.wustl.edu	36	14	95226939	95226939	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	14	95226939	95226939	C	T	SNP	TCL1B	NM_004918	human	genbank	54_36p	1	validated	silent	c.276	p.P92	0	"HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1"	"HMMPfam_TCL1_MTCP1,superfamily_TCL1_MTCP1"	-	no_errors
BDKRB2	624	genome.wustl.edu	36	14	95777499	95777499	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	95777499	95777499	A	T	SNP	BDKRB2	NM_000623	human	genbank	54_36p	1	reviewed	missense	c.1081	p.I361F	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
BDKRB2	624	genome.wustl.edu	36	14	95777581	95777581	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	95777581	95777581	G	A	SNP	BDKRB2	NM_000623	human	genbank	54_36p	1	reviewed	missense	c.1163	p.G388E	0	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
uc003vxi.2	0	genome.wustl.edu	36	7	141667577	141667577	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141667577	141667577	T	C	SNP	uc003vxi.2	ENST00000390352	human	ensembl	54_36p	1	known	silent	c.72	p.T24	0	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
uc003vyo.2	0	genome.wustl.edu	36	7	141838407	141838407	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141838407	141838407	C	A	SNP	uc003vyo.2	ENST00000390371	human	ensembl	54_36p	1	known	missense	c.266	p.T89N	0	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211729	0	genome.wustl.edu	36	7	141876211	141876211	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141876211	141876211	A	G	SNP	ENSG00000211729	ENST00000390376	human	ensembl	54_36p	1	known	missense	c.272	p.D91G	0	"superfamily_SSF48726,HMMPfam_V-set"	"superfamily_SSF48726,HMMPfam_V-set"	-	no_stop_codon:bad_bp_length_for_coding_region
uc003vzj.1	0	genome.wustl.edu	36	7	141952571	141952571	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141952571	141952571	A	G	SNP	uc003vzj.1	ENST00000390387	human	ensembl	54_36p	1	known	missense	c.74	p.Q25R	0.75	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
LOC401131	401131	genome.wustl.edu	36	1	142051456	142051456	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	142051456	142051456	A	C	SNP	LOC401131	XR_017704	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.85	-	-	-	no_errors
uc003wae.2	0	genome.wustl.edu	36	7	142108338	142108338	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142108338	142108338	T	C	SNP	uc003wae.2	ENST00000390400	human	ensembl	54_36p	1	known	silent	c.117	p.F39	0	"HMMPfam_V-set,superfamily_SSF48726"	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000208891	0	genome.wustl.edu	36	4	142438465	142438465	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	142438465	142438465	C	G	SNP	ENSG00000208891	ENST00000386156	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0	-	-	-	pseudogene
PDIA3P	171423	genome.wustl.edu	36	1	145116736	145116736	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	145116736	145116736	G	T	SNP	PDIA3P	NR_002305	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0	-	-	-	pseudogene
LOC100128116	100128116	genome.wustl.edu	36	5	146067018	146067018	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	146067018	146067018	C	G	SNP	LOC100128116	XR_039194	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MIR513A1	574509	genome.wustl.edu	36	X	146102784	146102784	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	146102784	146102784	G	T	SNP	MIRN513A1	ENST00000385138	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.3	-	-	-	no_errors
uc002goi.1	0	genome.wustl.edu	36	17	14623918	14623918	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	14623918	14623918	A	T	SNP	uc002goi.1	ENST00000379640	human	ensembl	54_36p	-1	known	nonsense	c.294	p.C98*	0	NULL	NULL	-	no_errors
LOC100131547	100131547	genome.wustl.edu	36	12	14658721	14658721	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	12	14658721	14658721	A	G	SNP	LOC100131547	XM_001722468	human	genbank	54_36p	1	model	splice_site	c.109-2	e3-2	0	-	-	-	no_errors
PABPC1P2	728773	genome.wustl.edu	36	2	147062247	147062247	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	147062247	147062247	T	C	SNP	PABPCP2	ENST00000359464	human	ensembl	54_36p	1	known	silent	c.237	p.N79	0.53	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
PABPC1P2	728773	genome.wustl.edu	36	2	147062571	147062571	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	147062571	147062571	A	C	SNP	PABPCP2	ENST00000359464	human	ensembl	54_36p	1	known	missense	c.561	p.L187F	1	superfamily_SSF54928	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
DRD5P2	1818	genome.wustl.edu	36	1	147170059	147170059	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	147170059	147170059	G	A	SNP	DRD5P2	ENST00000331689	human	ensembl	54_36p	1	known	missense	c.442	p.A148T	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_start_codon:no_stop_codon
LOC643438	643438	genome.wustl.edu	36	7	147965567	147965567	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	147965567	147965567	C	T	SNP	LOC643438	XR_015310	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	no_errors
uc003wgu.1	0	genome.wustl.edu	36	7	149614437	149614437	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	149614437	149614437	G	T	SNP	uc003wgu.1	ENST00000252071	human	ensembl	54_36p	-1	known	missense	c.423	p.D141E	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268"	-	no_errors
TARSL2	123283	genome.wustl.edu	36	15	100043728	100043728	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	100043728	100043728	G	A	SNP	TARSL2	NM_152334	human	genbank	54_36p	-1	validated	missense	c.1381	p.L461F	1	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b"	"HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
OR4F6	390648	genome.wustl.edu	36	15	100163773	100163773	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	100163773	100163773	A	T	SNP	OR4F6	NM_001005326	human	genbank	54_36p	1	provisional	missense	c.328	p.T110S	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4G2P	26680	genome.wustl.edu	36	15	100285023	100285023	+	Silent	SNP	A	G	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	100285023	100285023	A	G	SNP	OR4G2P	ENST00000328113	human	ensembl	54_36p	-1	known	silent	c.345	p.N115	0.03	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RHPN2P1	646090	genome.wustl.edu	36	15	18693880	18693880	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	18693880	18693880	C	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
RHPN2P1	646090	genome.wustl.edu	36	15	18694021	18694021	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	18694021	18694021	T	A	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RHPN2P1	646090	genome.wustl.edu	36	15	18722625	18722625	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	18722625	18722625	C	G	SNP	LOC646090	XR_017120	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC646139	646139	genome.wustl.edu	36	15	18981653	18981653	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	18981653	18981653	C	A	SNP	LOC646139	XR_037550	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000181984	0	genome.wustl.edu	36	15	19037934	19037934	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	19037934	19037934	G	A	SNP	ENSG00000181984	ENST00000318268	human	ensembl	54_36p	1	known	silent	c.1650	p.V550	0	NULL	NULL	-	no_errors
OR4M2	390538	genome.wustl.edu	36	15	19870123	19870123	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19870123	19870123	C	A	SNP	OR4M2	NM_001004719	human	genbank	54_36p	1	provisional	missense	c.184	p.L62M	0.97	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR4N4	283694	genome.wustl.edu	36	15	19884234	19884234	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19884234	19884234	C	A	SNP	OR4N4	NM_001005241	human	genbank	54_36p	1	provisional	nonsense	c.398	p.S133*	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4N4	283694	genome.wustl.edu	36	15	19884684	19884684	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19884684	19884684	A	T	SNP	OR4N4	NM_001005241	human	genbank	54_36p	1	provisional	missense	c.848	p.N283I	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LOC388076	388076	genome.wustl.edu	36	15	19941744	19941744	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19941744	19941744	G	A	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	missense	c.467	p.A156V	1	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene
LOC388076	388076	genome.wustl.edu	36	15	19941836	19941836	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19941836	19941836	C	G	SNP	LOC388076	XM_931016	human	genbank	54_36p	-1	model	missense	c.375	p.K125N	1	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	pseudogene
CYFIP1	23191	genome.wustl.edu	36	15	20481213	20481213	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	20481213	20481213	G	A	SNP	CYFIP1	NM_014608	human	genbank	54_36p	1	validated	missense	c.446	p.R149K	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
CYFIP1	23191	genome.wustl.edu	36	15	20520687	20520687	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	20520687	20520687	G	A	SNP	CYFIP1	NM_014608	human	genbank	54_36p	1	validated	missense	c.2472	p.M824I	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
SNRPN	6638	genome.wustl.edu	36	15	22774522	22774522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	22774522	22774522	C	G	SNP	SNRPN	NM_003097	human	genbank	54_36p	1	reviewed	missense	c.649	p.P217A	1	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
SNORD116-6	100033418	genome.wustl.edu	36	15	22861302	22861302	+	RNA	DEL	G	G	-	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	22861302	22861302	G	-	DEL	SNORD116-6	NR_003321	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	"(deletion:rna[22861265,22861362])"	no_errors
GABRA5	2558	genome.wustl.edu	36	15	24679590	24679590	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	24679590	24679590	A	T	SNP	GABRA5	ENST00000335625	human	ensembl	54_36p	1	known	missense	c.290	p.D97V	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
OCA2	4948	genome.wustl.edu	36	15	25674149	25674149	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	25674149	25674149	C	A	SNP	OCA2	NM_000275	human	genbank	54_36p	-1	reviewed	missense	c.2497	p.V833L	0.57	NULL	HMMPfam_CitMHS	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26110869	26110869	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26110869	26110869	G	C	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.8284	p.R2762G	1	superfamily_Galactose-binding domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26132886	26132886	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26132886	26132886	G	A	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	silent	c.6486	p.L2162	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC2	8924	genome.wustl.edu	36	15	26184666	26184666	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26184666	26184666	C	T	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.1648	p.G550R	1	"HMMPfam_RCC1,superfamily_RCC1/BLIP-II"	###############################################################################################################################################################################################################################################################	-	no_errors
LOC653720	653720	genome.wustl.edu	36	15	26752020	26752020	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	26752020	26752020	C	T	SNP	LOC653720	XM_001724258	human	genbank	54_36p	-1	model	missense	c.506	p.R169H	0.82	NULL	NULL	-	no_errors
TJP1	7082	genome.wustl.edu	36	15	27799406	27799406	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	27799406	27799406	T	A	SNP	TJP1	NM_003257	human	genbank	54_36p	-1	validated	missense	c.2870	p.E957V	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218"	-	no_errors
LOC400347	400347	genome.wustl.edu	36	15	29533346	29533346	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	29533346	29533346	G	A	SNP	LOC400347	XR_016518	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.48	-	-	-	pseudogene
CHRNA7	1139	genome.wustl.edu	36	15	30237995	30237995	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	30237995	30237995	C	T	SNP	CHRNA7	NM_000746	human	genbank	54_36p	1	reviewed	missense	c.689	p.T230M	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,superfamily_Neu_channel_TM"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
RYR3	6263	genome.wustl.edu	36	15	31837038	31837038	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	31837038	31837038	C	A	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	missense	c.8654	p.P2885H	1	NULL	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
ZNF770	54989	genome.wustl.edu	36	15	33061340	33061340	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	33061340	33061340	G	A	SNP	ZNF770	NM_014106	human	genbank	54_36p	-1	validated	missense	c.1588	p.P530S	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MEIS2	4212	genome.wustl.edu	36	15	35177473	35177473	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	35177473	35177473	C	T	SNP	MEIS2	NM_170675	human	genbank	54_36p	-1	reviewed	missense	c.232	p.D78N	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
FAM98B	283742	genome.wustl.edu	36	15	36544776	36544776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	36544776	36544776	G	C	SNP	FAM98B	NM_173611	human	genbank	54_36p	1	validated	missense	c.232	p.E78Q	1	HMMPfam_DUF2465	HMMPfam_DUF2465	-	no_errors
RASGRP1	10125	genome.wustl.edu	36	15	36591122	36591122	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	36591122	36591122	G	A	SNP	RASGRP1	NM_005739	human	genbank	54_36p	-1	reviewed	missense	c.941	p.S314L	1	"superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147"	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	-	no_errors
FSIP1	161835	genome.wustl.edu	36	15	37843406	37843406	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	37843406	37843406	G	T	SNP	FSIP1	NM_152597	human	genbank	54_36p	-1	validated	missense	c.467	p.S156Y	0.14	NULL	NULL	-	no_errors
BUB1B	701	genome.wustl.edu	36	15	38297101	38297101	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38297101	38297101	C	T	SNP	BUB1B	NM_001211	human	genbank	54_36p	1	validated	missense	c.2791	p.R931W	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMPfam_Mad3_BUB1_I,HMMSmart_SM00777"	-	no_errors
PLCB2	5330	genome.wustl.edu	36	15	38382800	38382800	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38382800	38382800	T	G	SNP	PLCB2	NM_004573	human	genbank	54_36p	-1	validated	missense	c.212	p.K71T	1	NULL	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C"	-	no_errors
C15orf23	90417	genome.wustl.edu	36	15	38471498	38471498	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38471498	38471498	G	A	SNP	C15orf23	NM_033286	human	genbank	54_36p	1	validated	silent	c.804	p.K268	1	NULL	NULL	-	no_errors
IVD	3712	genome.wustl.edu	36	15	38487138	38487138	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38487138	38487138	A	G	SNP	IVD	NM_002225	human	genbank	54_36p	1	reviewed	missense	c.154	p.T52A	1	"superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N"	"superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2"	-	no_errors
C15orf57	90416	genome.wustl.edu	36	15	38642302	38642302	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38642302	38642302	C	G	SNP	C15orf57	NM_001080791	human	genbank	54_36p	-1	validated	missense	c.232	p.A78P	1	NULL	NULL	-	no_errors
GCHFR	2644	genome.wustl.edu	36	15	38846742	38846742	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38846742	38846742	C	T	SNP	GCHFR	NM_005258	human	genbank	54_36p	1	reviewed	missense	c.158	p.P53L	1	"HMMPfam_GFRP,superfamily_GTP cyclohydrolase I feedback regulatory protein GFRP"	"HMMPfam_GFRP,superfamily_GTP cyclohydrolase I feedback regulatory protein GFRP"	-	no_errors
SPINT1	6692	genome.wustl.edu	36	15	38933038	38933038	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38933038	38933038	G	C	SNP	SPINT1	NM_181642	human	genbank	54_36p	1	reviewed	missense	c.663	p.Q221H	1	NULL	"HMMPfam_MANEC,HMMSmart_SM00765,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
VPS18	57617	genome.wustl.edu	36	15	38980364	38980364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	38980364	38980364	G	A	SNP	VPS18	NM_020857	human	genbank	54_36p	1	reviewed	missense	c.2056	p.A686T	1	superfamily_ARM repeat	"HMMPfam_Pep3_Vps18,superfamily_ARM repeat"	-	no_errors
NDUFAF1	51103	genome.wustl.edu	36	15	39474438	39474438	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39474438	39474438	T	G	SNP	NDUFAF1	NM_016013	human	genbank	54_36p	-1	validated	missense	c.670	p.K224Q	0.01	HMMPfam_CIA30	HMMPfam_CIA30	-	no_errors
RTF1	23168	genome.wustl.edu	36	15	39559776	39559776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39559776	39559776	G	C	SNP	RTF1	NM_015138	human	genbank	54_36p	1	validated	missense	c.1612	p.D538H	1	NULL	"HMMSmart_Plus3,HMMPfam_Plus-3"	-	no_errors
TYRO3	7301	genome.wustl.edu	36	15	39657412	39657412	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39657412	39657412	C	G	SNP	TYRO3	NM_006293	human	genbank	54_36p	1	provisional	silent	c.2319	p.P773	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39776435	39776435	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39776435	39776435	C	A	SNP	MGA	NM_001080541	human	genbank	54_36p	1	provisional	missense	c.1935	p.S645R	0.05	NULL	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353"	-	no_errors
MGA	23269	genome.wustl.edu	36	15	39828708	39828709	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	-	-	-	A	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	39828708	39828709	-	A	INS	MGA	NM_001080541	human	genbank	54_36p	1	provisional	frame_shift_ins	c.5758_5759	p.V1920fs	1.000:1.000	NULL	"HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,superfamily_HLH helix-loop-helix DNA-binding domain,PatternScan_TBOX_2"	-	no_errors
EHD4	30844	genome.wustl.edu	36	15	40033268	40033268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40033268	40033268	G	A	SNP	EHD4	NM_139265	human	genbank	54_36p	-1	provisional	silent	c.399	p.N133	1	"superfamily_SSF52540,HMMPfam_Dynamin_N"	"superfamily_SSF52540,HMMPfam_Dynamin_N,superfamily_SSF47473,HMMSmart_EH,PatternScan_EF_HAND_1"	-	no_errors
PLA2G4F	255189	genome.wustl.edu	36	15	40223586	40223586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40223586	40223586	C	G	SNP	PLA2G4F	NM_213600	human	genbank	54_36p	-1	provisional	missense	c.2024	p.C675S	0.83	"HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	-	no_errors
TMEM87A	25963	genome.wustl.edu	36	15	40316920	40316920	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40316920	40316920	A	T	SNP	TMEM87A	NM_015497	human	genbank	54_36p	-1	validated	splice_site	c.868+2	e9+2	1	-	-	-	no_errors
ZFP106	64397	genome.wustl.edu	36	15	40529814	40529814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40529814	40529814	C	T	SNP	ZFP106	NM_022473	human	genbank	54_36p	-1	provisional	missense	c.1879	p.E627K	0	NULL	"PatternScan_WD_REPEATS_1,HMMSmart_ZnF_C2H2,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMSmart_PQQ,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CDAN1	146059	genome.wustl.edu	36	15	40804705	40804705	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	40804705	40804705	C	G	SNP	CDAN1	NM_138477	human	genbank	54_36p	-1	validated	missense	c.3487	p.E1163Q	0.96	NULL	NULL	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41455704	41455704	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41455704	41455704	T	C	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	silent	c.195	p.H65	1	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41459634	41459634	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41459634	41459634	G	A	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	missense	c.502	p.V168I	1	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
TUBGCP4	27229	genome.wustl.edu	36	15	41476736	41476736	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41476736	41476736	A	C	SNP	TUBGCP4	NM_014444	human	genbank	54_36p	1	provisional	missense	c.1204	p.K402Q	1	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
MAP1A	4130	genome.wustl.edu	36	15	41607649	41607649	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41607649	41607649	C	T	SNP	MAP1A	NM_002373	human	genbank	54_36p	1	reviewed	missense	c.6686	p.S2229L	0.99	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
PDIA3	2923	genome.wustl.edu	36	15	41845419	41845419	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41845419	41845419	G	T	SNP	PDIA3	NM_005313	human	genbank	54_36p	1	reviewed	missense	c.762	p.L254F	1	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1"	-	no_errors
ELL3	80237	genome.wustl.edu	36	15	41853752	41853752	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	41853752	41853752	G	A	SNP	ELL3	NM_025165	human	genbank	54_36p	-1	validated	missense	c.958	p.R320C	0.86	HMMPfam_Occludin_ELL	"HMMPfam_ELL,HMMPfam_Occludin_ELL"	-	no_errors
SPG11	80208	genome.wustl.edu	36	15	42740027	42740027	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	42740027	42740027	G	A	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	silent	c.337	p.L113	0.99	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
B2M	567	genome.wustl.edu	36	15	42791037	42791037	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	42791037	42791037	A	G	SNP	B2M	NM_004048	human	genbank	54_36p	1	validated	missense	c.1	p.M1V	0.06	NULL	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
DUOXA1	90527	genome.wustl.edu	36	15	43197528	43197528	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43197528	43197528	C	T	SNP	DUOXA1	NM_144565	human	genbank	54_36p	-1	provisional	silent	c.1023	p.A341	0	NULL	HMMPfam_DuoxA	-	no_errors
SHF	90525	genome.wustl.edu	36	15	43251793	43251793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43251793	43251793	G	T	SNP	SHF	NM_138356	human	genbank	54_36p	-1	validated	missense	c.809	p.P270Q	0.99	NULL	"superfamily_Nucleotidylyl transferase,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43341525	43341525	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43341525	43341525	G	A	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.191	p.S64N	0.02	NULL	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43342663	43342663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43342663	43342663	G	C	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.375	p.K125N	0.01	NULL	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SLC28A2	9153	genome.wustl.edu	36	15	43347163	43347163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43347163	43347163	C	T	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.1076	p.A359V	1	NULL	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SPATA5L1	79029	genome.wustl.edu	36	15	43500622	43500622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43500622	43500622	G	A	SNP	SPATA5L1	NM_024063	human	genbank	54_36p	1	provisional	silent	c.2184	p.P728	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
C15orf48	84419	genome.wustl.edu	36	15	43510545	43510545	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	43510545	43510545	G	C	SNP	C15orf48	NM_032413	human	genbank	54_36p	1	validated	missense	c.91	p.A31P	0	HMMPfam_NADH_ub_rd_NUML	HMMPfam_NADH_ub_rd_NUML	-	no_errors
LOC644029	644029	genome.wustl.edu	36	15	45809615	45809615	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	45809615	45809615	C	T	SNP	LOC644029	XR_017397	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.83	-	-	-	pseudogene
MYEF2	50804	genome.wustl.edu	36	15	46245454	46245454	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46245454	46245454	C	G	SNP	MYEF2	NM_016132	human	genbank	54_36p	-1	validated	missense	c.493	p.D165H	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
SLC12A1	6557	genome.wustl.edu	36	15	46308807	46308807	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46308807	46308807	A	T	SNP	SLC12A1	NM_000338	human	genbank	54_36p	1	validated	missense	c.854	p.D285V	1	HMMPfam_AA_permease	"HMMPfam_AA_permease_N,HMMPfam_AA_permease"	-	no_errors
FBN1	2200	genome.wustl.edu	36	15	46500294	46500294	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46500294	46500294	G	A	SNP	FBN1	NM_000138	human	genbank	54_36p	-1	reviewed	silent	c.7701	p.D2567	1	"superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179"	###############################################################################################################################################################################################################################################################	-	no_errors
SHC4	399694	genome.wustl.edu	36	15	46914506	46914506	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	46914506	46914506	G	T	SNP	SHC4	NM_203349	human	genbank	54_36p	-1	validated	missense	c.1489	p.P497T	1	superfamily_SH2 domain	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
C15orf33	196951	genome.wustl.edu	36	15	47621290	47621290	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	47621290	47621290	A	G	SNP	C15orf33	NM_152647	human	genbank	54_36p	-1	validated	silent	c.753	p.Y251	0.99	NULL	NULL	-	no_errors
ATP8B4	79895	genome.wustl.edu	36	15	48052207	48052207	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	48052207	48052207	T	A	SNP	ATP8B4	NM_024837	human	genbank	54_36p	-1	validated	silent	c.1107	p.A369	0.14	superfamily_SSF81665	"superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3"	-	no_errors
GABPB1	2553	genome.wustl.edu	36	15	48383548	48383549	+	Missense_Mutation	DNP	AC	TA	TA	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	AC	AC	TA	TA	AC	AC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	48383548	48383549	AC	TA	DNP	GABPB1	NM_005254	human	genbank	54_36p	-1	reviewed	missense	c.183_182	p.G61V	0.997:1.000	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
GLDN	342035	genome.wustl.edu	36	15	49474451	49474451	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49474451	49474451	C	T	SNP	GLDN	NM_181789	human	genbank	54_36p	1	validated	silent	c.669	p.S223	1	NULL	"HMMPfam_Collagen,HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49582396	49582396	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49582396	49582396	A	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.2891	p.L964P	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49615243	49615243	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49615243	49615243	A	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.2345	p.F782S	1	HMMSmart_SM00320	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
DMXL2	23312	genome.wustl.edu	36	15	49617139	49617139	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49617139	49617139	T	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	silent	c.1455	p.P485	0.95	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
SCG3	29106	genome.wustl.edu	36	15	49761280	49761280	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	49761280	49761280	G	C	SNP	SCG3	NM_013243	human	genbank	54_36p	1	reviewed	silent	c.36	p.V12	1	NULL	NULL	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359091	50359091	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50359091	50359091	C	T	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.211	p.D71N	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL"	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359100	50359100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50359100	50359100	C	T	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.202	p.G68S	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO5C	55930	genome.wustl.edu	36	15	50359104	50359104	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50359104	50359104	G	A	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	silent	c.198	p.L66	0.99	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO5A	4644	genome.wustl.edu	36	15	50505448	50505448	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	50505448	50505448	G	C	SNP	MYO5A	NM_000259	human	genbank	54_36p	-1	reviewed	missense	c.326	p.A109G	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL"	-	no_errors
LOC645693	645693	genome.wustl.edu	36	15	51017784	51017784	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	51017784	51017784	G	T	SNP	LOC645693	XR_017498	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
UNC13C	440279	genome.wustl.edu	36	15	52093232	52093232	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52093232	52093232	T	A	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.840	p.S280R	0.98	NULL	"superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD"	-	no_errors
UNC13C	440279	genome.wustl.edu	36	15	52094558	52094558	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52094558	52094558	A	C	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	silent	c.2166	p.P722	1	NULL	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
UNC13C	440279	genome.wustl.edu	36	15	52343746	52343746	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52343746	52343746	G	C	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.3537	p.E1179D	1	NULL	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
UNC13C	440279	genome.wustl.edu	36	15	52647435	52647435	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	52647435	52647435	A	C	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.6104	p.Q2035P	1	NULL	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
RAB27A	5873	genome.wustl.edu	36	15	53308192	53308192	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	53308192	53308192	A	G	SNP	RAB27A	NM_004580	human	genbank	54_36p	-1	reviewed	silent	c.250	p.L84	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
CCPG1	9236	genome.wustl.edu	36	15	53439566	53439566	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	53439566	53439566	A	G	SNP	CCPG1	NM_004748	human	genbank	54_36p	-1	validated	missense	c.1697	p.F566S	0	NULL	NULL	-	no_errors
PRTG	283659	genome.wustl.edu	36	15	53820119	53820119	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	53820119	53820119	G	A	SNP	PRTG	NM_173814	human	genbank	54_36p	-1	validated	silent	c.150	p.V50	1	"HMMPfam_I-set,superfamily_SSF48726"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
MNS1	55329	genome.wustl.edu	36	15	54508658	54508658	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	54508658	54508658	A	G	SNP	MNS1	NM_018365	human	genbank	54_36p	-1	reviewed	missense	c.1421	p.I474T	0.98	NULL	NULL	-	no_errors
ZNF280D	54816	genome.wustl.edu	36	15	54758184	54758184	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	54758184	54758184	C	T	SNP	ZNF280D	NM_017661	human	genbank	54_36p	-1	validated	missense	c.1132	p.E378K	1	"HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
TCF12	6938	genome.wustl.edu	36	15	55143311	55143311	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	55143311	55143311	A	G	SNP	TCF12	NM_207036	human	genbank	54_36p	1	reviewed	missense	c.220	p.R74G	1	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
TCF12	6938	genome.wustl.edu	36	15	55362041	55362041	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	55362041	55362041	G	C	SNP	TCF12	NM_207036	human	genbank	54_36p	1	reviewed	silent	c.2085	p.G695	1	NULL	"HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic"	-	no_errors
CGNL1	84952	genome.wustl.edu	36	15	55518952	55518952	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	55518952	55518952	G	A	SNP	CGNL1	NM_032866	human	genbank	54_36p	1	validated	missense	c.1463	p.G488D	0.09	NULL	HMMPfam_Myosin_tail_1	-	no_errors
LIPC	3990	genome.wustl.edu	36	15	56617868	56617868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	56617868	56617868	C	T	SNP	LIPC	NM_000236	human	genbank	54_36p	1	reviewed	silent	c.133	p.L45	0	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
RNF111	54778	genome.wustl.edu	36	15	57172032	57172032	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	57172032	57172032	A	T	SNP	RNF111	NM_017610	human	genbank	54_36p	1	reviewed	missense	c.2744	p.K915I	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
FAM81A	145773	genome.wustl.edu	36	15	57539488	57539488	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	57539488	57539488	C	G	SNP	FAM81A	NM_152450	human	genbank	54_36p	1	validated	missense	c.85	p.L29V	0.98	NULL	NULL	-	no_errors
BNIP2	663	genome.wustl.edu	36	15	57752127	57752127	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	57752127	57752127	C	A	SNP	BNIP2	NM_004330	human	genbank	54_36p	-1	reviewed	splice_site	c.575+1	e5+1	1	-	-	-	no_errors
ANXA2	302	genome.wustl.edu	36	15	58436718	58436718	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	58436718	58436718	T	G	SNP	ANXA2	NM_001002858	human	genbank	54_36p	-1	reviewed	missense	c.421	p.T141P	1	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
VPS13C	54832	genome.wustl.edu	36	15	60048898	60048898	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	60048898	60048898	G	C	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	missense	c.2803	p.L935V	1	NULL	HMMPfam_DUF1162	-	no_errors
FLJ38723	255180	genome.wustl.edu	36	15	60331396	60331396	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	60331396	60331396	A	C	SNP	FLJ38723	XR_041381	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	no_errors
TLN2	83660	genome.wustl.edu	36	15	60918107	60918107	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	60918107	60918107	G	A	SNP	TLN2	NM_015059	human	genbank	54_36p	1	reviewed	splice_site	c.7375-1	e55-1	1	-	-	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61727326	61727326	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	61727326	61727326	G	A	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	missense	c.10873	p.H3625Y	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_ARGINASE_2"	###############################################################################################################################################################################################################################################################	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61739125	61739125	+	Nonsense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	61739125	61739125	A	C	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	nonsense	c.9287	p.L3096*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC1	8925	genome.wustl.edu	36	15	61751786	61751786	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	61751786	61751786	T	G	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	silent	c.8007	p.A2669	0.94	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TRIP4	56238	genome.wustl.edu	36	15	62477071	62477071	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	62477071	62477071	G	T	SNP	TRIP4	NM_016213	human	genbank	54_36p	1	validated	splice_site	c.618+1	e4+1	1	-	-	-	no_errors
ZNF609	23060	genome.wustl.edu	36	15	62579042	62579042	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	62579042	62579042	G	A	SNP	ZNF609	NM_015042	human	genbank	54_36p	1	provisional	missense	c.371	p.R124H	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PLEKHO2	80301	genome.wustl.edu	36	15	62944873	62944873	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	62944873	62944873	C	A	SNP	PLEKHO2	NM_025201	human	genbank	54_36p	1	validated	silent	c.1206	p.P402	0	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
CILP	8483	genome.wustl.edu	36	15	63277186	63277186	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63277186	63277186	C	G	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	missense	c.2491	p.E831Q	1	NULL	"PatternScan_HEXAPEP_TRANSFERASES,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
CILP	8483	genome.wustl.edu	36	15	63277777	63277777	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63277777	63277777	T	A	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	missense	c.1900	p.T634S	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin"	-	no_errors
CILP	8483	genome.wustl.edu	36	15	63286375	63286375	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63286375	63286375	C	A	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	silent	c.222	p.L74	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin"	-	no_errors
IGDCC3	9543	genome.wustl.edu	36	15	63409183	63409183	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63409183	63409183	C	A	SNP	IGDCC3	NM_004884	human	genbank	54_36p	-1	validated	missense	c.1931	p.G644V	1	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
C15orf44	81556	genome.wustl.edu	36	15	63686706	63686706	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	63686706	63686706	G	A	SNP	C15orf44	NM_030800	human	genbank	54_36p	-1	predicted	silent	c.66	p.S22	0.75	superfamily_vWA-like	superfamily_vWA-like	-	no_errors
DIS3L	115752	genome.wustl.edu	36	15	64405758	64405758	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	64405758	64405758	T	G	SNP	DIS3L	NM_133375	human	genbank	54_36p	1	validated	splice_site	c.1952+2	e11+2	1	-	-	-	no_errors
PIAS1	8554	genome.wustl.edu	36	15	66221345	66221345	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	66221345	66221345	C	T	SNP	PIAS1	NM_016166	human	genbank	54_36p	1	reviewed	silent	c.477	p.D159	1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
CORO2B	10391	genome.wustl.edu	36	15	66790129	66790129	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	66790129	66790129	G	A	SNP	CORO2B	NM_006091	human	genbank	54_36p	1	validated	missense	c.338	p.R113Q	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	"HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900"	-	no_errors
GLCE	26035	genome.wustl.edu	36	15	67347845	67347845	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	67347845	67347845	G	T	SNP	GLCE	NM_015554	human	genbank	54_36p	1	validated	silent	c.1062	p.L354	1	NULL	HMMPfam_C5-epim_C	-	no_errors
GLCE	26035	genome.wustl.edu	36	15	67348201	67348201	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	67348201	67348201	C	T	SNP	GLCE	NM_015554	human	genbank	54_36p	1	validated	missense	c.1418	p.A473V	1	HMMPfam_C5-epim_C	HMMPfam_C5-epim_C	-	no_errors
UACA	55075	genome.wustl.edu	36	15	68746196	68746196	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	68746196	68746196	T	C	SNP	UACA	NM_018003	human	genbank	54_36p	-1	validated	missense	c.3881	p.D1294G	1	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_Pox_A_type_inc"	-	no_errors
KRT8P9	390601	genome.wustl.edu	36	15	68939469	68939469	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	68939469	68939469	C	T	SNP	KRT8P9	XR_017231	human	genbank	54_36p	1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
LRRC49	54839	genome.wustl.edu	36	15	69016209	69016209	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	69016209	69016209	T	G	SNP	LRRC49	NM_017691	human	genbank	54_36p	1	validated	missense	c.767	p.I256R	1	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369"	-	no_errors
THSD4	79875	genome.wustl.edu	36	15	69837379	69837379	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	69837379	69837379	T	G	SNP	THSD4	NM_024817	human	genbank	54_36p	1	provisional	missense	c.2500	p.C834G	1	"HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_ADAM_spacer1,HMMPfam_TSP_1,HMMPfam_PLAC"	-	no_errors
SENP8	123228	genome.wustl.edu	36	15	70219543	70219543	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	70219543	70219543	T	A	SNP	SENP8	NM_145204	human	genbank	54_36p	1	provisional	nonsense	c.525	p.C175*	1	"superfamily_SSF54001,HMMPfam_Peptidase_C48"	"superfamily_SSF54001,HMMPfam_Peptidase_C48"	-	no_errors
HEXA	3073	genome.wustl.edu	36	15	70425947	70425947	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	70425947	70425947	G	A	SNP	HEXA	NM_000520	human	genbank	54_36p	-1	reviewed	silent	c.1305	p.Y435	0.95	"HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	"superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	-	no_errors
HCN4	10021	genome.wustl.edu	36	15	71404829	71404829	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	71404829	71404829	C	T	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.1600	p.V534M	1	superfamily_cNMP_binding	"PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1"	-	no_errors
HCN4	10021	genome.wustl.edu	36	15	71423026	71423026	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	71423026	71423026	T	A	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.962	p.E321V	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324"	-	no_errors
ISLR	3671	genome.wustl.edu	36	15	72254722	72254722	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72254722	72254722	G	A	SNP	ISLR	NM_005545	human	genbank	54_36p	1	validated	missense	c.470	p.R157H	0.99	"superfamily_SSF52058,HMMSmart_LRR_TYP"	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
CCDC33	80125	genome.wustl.edu	36	15	72347841	72347841	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72347841	72347841	A	T	SNP	CCDC33	NM_025055	human	genbank	54_36p	1	validated	missense	c.535	p.M179L	0.81	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
CCDC33	80125	genome.wustl.edu	36	15	72410091	72410091	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72410091	72410091	G	A	SNP	CCDC33	NM_025055	human	genbank	54_36p	1	validated	silent	c.1491	p.L497	0.57	NULL	"HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
CCDC33	80125	genome.wustl.edu	36	15	72414492	72414492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72414492	72414492	C	A	SNP	CCDC33	NM_182791	human	genbank	54_36p	1	validated	missense	c.1030	p.P344T	0.03	NULL	NULL	-	no_errors
CYP11A1	1583	genome.wustl.edu	36	15	72418703	72418703	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72418703	72418703	G	T	SNP	CYP11A1	NM_000781	human	genbank	54_36p	-1	reviewed	missense	c.1164	p.H388Q	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP11A1	1583	genome.wustl.edu	36	15	72423214	72423214	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72423214	72423214	A	G	SNP	CYP11A1	NM_000781	human	genbank	54_36p	-1	reviewed	silent	c.798	p.H266	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP1A1	1543	genome.wustl.edu	36	15	72799903	72799903	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72799903	72799903	G	T	SNP	CYP1A1	NM_000499	human	genbank	54_36p	-1	reviewed	missense	c.1519	p.Q507K	0.94	superfamily_Cytochrome P450	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP1A2	1544	genome.wustl.edu	36	15	72834381	72834381	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72834381	72834381	C	A	SNP	CYP1A2	NM_000761	human	genbank	54_36p	1	reviewed	missense	c.1450	p.P484T	0.03	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
SCAMP2	10066	genome.wustl.edu	36	15	72928000	72928000	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72928000	72928000	C	G	SNP	SCAMP2	NM_005697	human	genbank	54_36p	-1	reviewed	missense	c.728	p.G243A	1	HMMPfam_SCAMP	HMMPfam_SCAMP	-	no_errors
MPI	4351	genome.wustl.edu	36	15	72975669	72975669	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72975669	72975669	G	T	SNP	MPI	NM_002435	human	genbank	54_36p	1	reviewed	missense	c.794	p.G265V	1	"superfamily_RmlC-like cupins,HMMPfam_PMI_typeI"	"superfamily_RmlC-like cupins,HMMPfam_PMI_typeI,PatternScan_PMI_I_1,PatternScan_PMI_I_2"	-	no_errors
SCAMP5	192683	genome.wustl.edu	36	15	73096050	73096050	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73096050	73096050	G	A	SNP	SCAMP5	NM_138967	human	genbank	54_36p	1	validated	missense	c.200	p.G67E	1	HMMPfam_SCAMP	HMMPfam_SCAMP	-	no_errors
LOC653641	653641	genome.wustl.edu	36	15	73343458	73343458	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73343458	73343458	A	G	SNP	LOC653641	XM_496076	human	genbank	54_36p	1	model	missense	c.545	p.Q182R	1	NULL	NULL	-	no_errors
SNX33	257364	genome.wustl.edu	36	15	73729785	73729785	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73729785	73729785	G	A	SNP	SNX33	NM_153271	human	genbank	54_36p	1	provisional	silent	c.1287	p.Q429	1	HMMPfam_BAR_3_WASP_bdg	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_BAR_3_WASP_bdg"	-	no_errors
CSPG4	1464	genome.wustl.edu	36	15	73756197	73756197	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73756197	73756197	G	A	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	silent	c.5718	p.F1906	0.95	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA"	-	no_errors
ENSG00000222964	0	genome.wustl.edu	36	15	73864775	73864775	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	73864775	73864775	C	T	SNP	ENSG00000222964	ENST00000411032	human	ensembl	54_36p	1	novel	rna	NULL	NULL	0.2	-	-	-	no_errors
SGK269	79834	genome.wustl.edu	36	15	75212886	75212886	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	75212886	75212886	C	T	SNP	SGK269	NM_024776	human	genbank	54_36p	-1	validated	missense	c.3593	p.S1198N	1	NULL	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
WDR61	80349	genome.wustl.edu	36	15	76369034	76369034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	76369034	76369034	G	A	SNP	WDR61	NM_025234	human	genbank	54_36p	-1	provisional	missense	c.544	p.L182F	1	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
RASGRF1	5923	genome.wustl.edu	36	15	77126261	77126261	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	77126261	77126261	C	G	SNP	RASGRF1	NM_002891	human	genbank	54_36p	-1	reviewed	missense	c.760	p.E254Q	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	###############################################################################################################################################################################################################################################################	-	no_errors
IL16	3603	genome.wustl.edu	36	15	79339214	79339214	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	79339214	79339214	C	A	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	missense	c.359	p.A120E	0.03	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
IL16	3603	genome.wustl.edu	36	15	79372265	79372265	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	79372265	79372265	G	A	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	silent	c.1734	p.P578	0	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
STARD5	80765	genome.wustl.edu	36	15	79392760	79392760	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	79392760	79392760	G	T	SNP	STARD5	NM_181900	human	genbank	54_36p	-1	validated	silent	c.534	p.T178	0.93	"superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	"superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
EFTUD1	79631	genome.wustl.edu	36	15	80338515	80338515	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	80338515	80338515	T	C	SNP	EFTUD1	NM_024580	human	genbank	54_36p	-1	validated	missense	c.128	p.N43S	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_EFG_IV,HMMPfam_EFG_C"	-	no_errors
CPEB1	64506	genome.wustl.edu	36	15	81037199	81037199	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81037199	81037199	G	T	SNP	CPEB1	NM_030594	human	genbank	54_36p	-1	reviewed	missense	c.329	p.P110H	1	NULL	superfamily_SSF54928	-	no_errors
AP3B2	8120	genome.wustl.edu	36	15	81128568	81128568	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81128568	81128568	G	T	SNP	AP3B2	NM_004644	human	genbank	54_36p	-1	validated	nonsense	c.2708	p.S903*	1	NULL	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
AP3B2	8120	genome.wustl.edu	36	15	81128641	81128641	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81128641	81128641	C	T	SNP	AP3B2	ENST00000261722	human	ensembl	54_36p	-1	known	missense	c.2633	p.R878H	1	superfamily_Clathrin adaptor appendage domain	"HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,superfamily_ARM repeat"	-	no_errors
WHAMM	123720	genome.wustl.edu	36	15	81296867	81296867	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81296867	81296867	G	T	SNP	WHAMM	NM_001080435	human	genbank	54_36p	1	provisional	nonsense	c.2104	p.E702*	0	NULL	HMMPfam_WH2	-	no_errors
WHAMM	123720	genome.wustl.edu	36	15	81299246	81299246	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81299246	81299246	G	A	SNP	WHAMM	NM_001080435	human	genbank	54_36p	1	provisional	silent	c.2334	p.E778	1	NULL	HMMPfam_WH2	-	no_errors
BTBD1	53339	genome.wustl.edu	36	15	81516183	81516183	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81516183	81516183	G	C	SNP	BTBD1	NM_025238	human	genbank	54_36p	-1	reviewed	missense	c.520	p.H174D	1	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_PHR"	-	no_errors
BNC1	646	genome.wustl.edu	36	15	81726708	81726708	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	81726708	81726708	G	A	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.319	p.R107C	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ADAMTSL3	57188	genome.wustl.edu	36	15	82279788	82279788	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82279788	82279788	C	G	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	missense	c.585	p.I195M	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC"	-	no_errors
ADAMTSL3	57188	genome.wustl.edu	36	15	82442256	82442256	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82442256	82442256	C	T	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	missense	c.2872	p.R958W	0.05	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
LOC642677	642677	genome.wustl.edu	36	15	82513135	82513135	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82513135	82513135	C	T	SNP	LOC642677	XR_036878	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ZSCAN2	54993	genome.wustl.edu	36	15	82964862	82964862	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	82964862	82964862	G	C	SNP	ZSCAN2	NM_181877	human	genbank	54_36p	1	reviewed	silent	c.432	p.G144	0.1	HMMSmart_SM00431	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SEC11A	23478	genome.wustl.edu	36	15	83014261	83014261	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83014261	83014261	C	T	SNP	SEC11A	NM_014300	human	genbank	54_36p	-1	provisional	missense	c.533	p.R178H	1	NULL	"superfamily_LexA/Signal peptidase,HMMPfam_Peptidase_S24,PatternScan_SPASE_I_1,PatternScan_SPASE_I_3"	-	no_errors
ZNF592	9640	genome.wustl.edu	36	15	83128692	83128692	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83128692	83128692	C	T	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	silent	c.1782	p.D594	1	HMMSmart_ZnF_C2H2	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF592	9640	genome.wustl.edu	36	15	83143401	83143401	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83143401	83143401	C	T	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	silent	c.3093	p.H1031	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF592	9640	genome.wustl.edu	36	15	83144123	83144123	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83144123	83144123	G	C	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	missense	c.3184	p.E1062Q	1	HMMSmart_ZnF_C2H2	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ALPK3	57538	genome.wustl.edu	36	15	83201506	83201506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83201506	83201506	G	C	SNP	ALPK3	NM_020778	human	genbank	54_36p	1	validated	missense	c.3139	p.G1047R	0	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
ALPK3	57538	genome.wustl.edu	36	15	83201845	83201845	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83201845	83201845	G	C	SNP	ALPK3	NM_020778	human	genbank	54_36p	1	validated	missense	c.3478	p.D1160H	0.09	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
PDE8A	5151	genome.wustl.edu	36	15	83411368	83411368	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83411368	83411368	G	A	SNP	PDE8A	NM_002605	human	genbank	54_36p	1	validated	silent	c.363	p.L121	1	HMMPfam_Response_reg	"HMMPfam_PDE8,HMMPfam_Response_reg,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDE8A	5151	genome.wustl.edu	36	15	83470593	83470593	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	83470593	83470593	A	C	SNP	PDE8A	NM_002605	human	genbank	54_36p	1	validated	missense	c.2237	p.E746A	1	"HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like"	"HMMPfam_Response_reg,HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,HMMPfam_PAS,HMMPfam_PDE8,superfamily_HD-domain/PDEase-like,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
AKAP13	11214	genome.wustl.edu	36	15	84029056	84029056	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	84029056	84029056	G	T	SNP	AKAP13	NM_006738	human	genbank	54_36p	1	reviewed	missense	c.5249	p.S1750I	1	NULL	"superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
KLHL25	64410	genome.wustl.edu	36	15	84112344	84112344	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	84112344	84112344	T	C	SNP	KLHL25	NM_022480	human	genbank	54_36p	-1	validated	missense	c.1702	p.I568V	0.99	"HMMPfam_Kelch_1,HMMSmart_Kelch"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
NTRK3	4916	genome.wustl.edu	36	15	86221209	86221209	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	86221209	86221209	C	A	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	missense	c.2481	p.L827F	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK3	4916	genome.wustl.edu	36	15	86323601	86323601	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	86323601	86323601	G	A	SNP	NTRK3	NM_001007156	human	genbank	54_36p	-1	reviewed	silent	c.1818	p.S606	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_I-set"	-	no_errors
ACAN	176	genome.wustl.edu	36	15	87183079	87183079	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	87183079	87183079	A	G	SNP	ACAN	NM_013227	human	genbank	54_36p	1	reviewed	silent	c.252	p.V84	1	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	###############################################################################################################################################################################################################################################################	-	no_errors
MFGE8	4240	genome.wustl.edu	36	15	87251603	87251603	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	87251603	87251603	C	G	SNP	MFGE8	NM_005928	human	genbank	54_36p	-1	validated	missense	c.214	p.E72Q	0	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like"	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
ABHD2	11057	genome.wustl.edu	36	15	87520209	87520209	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	87520209	87520209	G	C	SNP	ABHD2	NM_007011	human	genbank	54_36p	1	reviewed	missense	c.701	p.C234S	1	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	"superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_UPF0017"	-	no_errors
WDR93	56964	genome.wustl.edu	36	15	88071457	88071457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	88071457	88071457	G	A	SNP	WDR93	NM_020212	human	genbank	54_36p	1	provisional	missense	c.946	p.G316R	0.98	NULL	"superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,PatternScan_WD_REPEATS_1"	-	no_errors
ANPEP	290	genome.wustl.edu	36	15	88150390	88150390	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	88150390	88150390	T	C	SNP	ANPEP	NM_001150	human	genbank	54_36p	-1	reviewed	silent	c.429	p.G143	0	"superfamily_SSF63737,HMMPfam_Peptidase_M1"	"superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE"	-	no_errors
IQGAP1	8826	genome.wustl.edu	36	15	88820975	88820975	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	88820975	88820975	A	G	SNP	IQGAP1	NM_003870	human	genbank	54_36p	1	reviewed	missense	c.2861	p.Q954R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MAN2A2	4122	genome.wustl.edu	36	15	89251066	89251066	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89251066	89251066	C	G	SNP	MAN2A2	NM_006122	human	genbank	54_36p	1	validated	missense	c.928	p.L310V	1	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
UNC45A	55898	genome.wustl.edu	36	15	89290898	89290898	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89290898	89290898	C	T	SNP	UNC45A	NM_018671	human	genbank	54_36p	1	validated	missense	c.1250	p.T417M	1	superfamily_ARM repeat	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_2,superfamily_ARM repeat"	-	no_errors
PRC1	9055	genome.wustl.edu	36	15	89318428	89318428	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89318428	89318428	G	C	SNP	PRC1	NM_003981	human	genbank	54_36p	-1	reviewed	missense	c.1403	p.P468R	0.15	HMMPfam_MAP65_ASE1	HMMPfam_MAP65_ASE1	-	no_errors
VPS33B	26276	genome.wustl.edu	36	15	89349139	89349139	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89349139	89349139	G	C	SNP	VPS33B	NM_018668	human	genbank	54_36p	-1	reviewed	silent	c.1197	p.L399	0.99	"superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1"	"superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1"	-	no_errors
SV2B	9899	genome.wustl.edu	36	15	89570923	89570923	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	15	89570923	89570923	G	C	SNP	SV2B	NM_014848	human	genbank	54_36p	1	validated	silent	c.426	p.L142	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SV2B	9899	genome.wustl.edu	36	15	89596149	89596149	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	89596149	89596149	C	T	SNP	SV2B	NM_014848	human	genbank	54_36p	1	validated	missense	c.548	p.A183V	1	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
SPATA8	145946	genome.wustl.edu	36	15	95129238	95129238	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	95129238	95129238	T	C	SNP	SPATA8	NM_173499	human	genbank	54_36p	1	provisional	missense	c.205	p.C69R	0	NULL	NULL	-	no_errors
SYNM	23336	genome.wustl.edu	36	15	97490006	97490006	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	97490006	97490006	A	G	SNP	SYNM	NM_145728	human	genbank	54_36p	1	reviewed	missense	c.3917	p.H1306R	0	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C15orf51	196968	genome.wustl.edu	36	15	98149807	98149807	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98149807	98149807	C	A	SNP	C15orf51	NR_003260	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.31	-	-	-	pseudogene
ADAMTS17	170691	genome.wustl.edu	36	15	98512972	98512972	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98512972	98512972	C	T	SNP	ADAMTS17	NM_139057	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.G420S	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
LASS3	204219	genome.wustl.edu	36	15	98830675	98830675	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98830675	98830675	C	T	SNP	LASS3	NM_178842	human	genbank	54_36p	-1	validated	missense	c.715	p.D239N	1	"HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	"superfamily_Homeodomain-like,HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
LINS	55180	genome.wustl.edu	36	15	98938528	98938528	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	98938528	98938528	C	A	SNP	LINS1	NM_001040614	human	genbank	54_36p	-1	reviewed	missense	c.43	p.V15L	0.99	NULL	NULL	-	no_errors
LRRK1	79705	genome.wustl.edu	36	15	99383843	99383843	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	99383843	99383843	G	A	SNP	LRRK1	NM_024652	human	genbank	54_36p	1	validated	missense	c.2383	p.D795N	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	###############################################################################################################################################################################################################################################################	-	no_errors
uc002ddh.1	0	genome.wustl.edu	36	16	15115830	15115830	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15115830	15115830	C	T	SNP	uc002ddh.1	ENST00000340301	human	ensembl	54_36p	-1	known	missense	c.1954	p.A652T	0	HMMPfam_NPIP	"PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_NPIP"	-	no_start_codon
ENSG00000208756	0	genome.wustl.edu	36	3	151278263	151278263	+	RNA	SNP	C	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	151278263	151278263	C	T	SNP	ENSG00000208756	ENST00000386021	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0	-	-	-	pseudogene
LOC100130646	100130646	genome.wustl.edu	36	3	15150491	15150491	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	15150491	15150491	A	G	SNP	LOC100130646	XR_038601	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
LOC100130935	100130935	genome.wustl.edu	36	X	151647365	151647365	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	151647365	151647365	G	T	SNP	LOC100130935	XM_001721280	human	genbank	54_36p	-1	model	silent	c.114	p.A38	0	NULL	NULL	-	no_errors
ENSG00000184624	0	genome.wustl.edu	36	18	15261452	15261452	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	15261452	15261452	G	A	SNP	ENSG00000184624	ENST00000330020	human	ensembl	54_36p	1	known	silent	c.1239	p.K413	0.75	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_start_codon:no_stop_codon
ENSG00000184624	0	genome.wustl.edu	36	18	15261461	15261461	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	15261461	15261461	T	C	SNP	ENSG00000184624	ENST00000330020	human	ensembl	54_36p	1	known	silent	c.1248	p.H416	1	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_start_codon:no_stop_codon
LOC100132032	100132032	genome.wustl.edu	36	22	15370301	15370301	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	15370301	15370301	C	T	SNP	LOC100132032	XM_001726273	human	genbank	54_36p	1	model	missense	c.91	p.R31W	0.9	NULL	NULL	-	no_errors
LOC100130960	100130960	genome.wustl.edu	36	4	153937093	153937093	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	153937093	153937093	C	T	SNP	LOC100130960	XR_038000	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000215003	0	genome.wustl.edu	36	16	15933071	15933071	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15933071	15933071	A	G	SNP	ENSG00000215003	ENST00000399416	human	ensembl	54_36p	-1	known	missense	c.554	p.L185P	1	NULL	"superfamily_L23_L15e_core,HMMPfam_Ribosomal_L15e"	-	no_errors
LOC642451	642451	genome.wustl.edu	36	16	11028662	11028662	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	11028662	11028662	A	C	SNP	LOC642451	XM_926336	human	genbank	54_36p	1	model	missense	c.308	p.E103A	0.89	"HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e"	"PatternScan_GAPDH,HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30"	-	pseudogene
GSPT1	2935	genome.wustl.edu	36	16	11897968	11897968	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	11897968	11897968	C	A	SNP	GSPT1	NM_002094	human	genbank	54_36p	-1	validated	silent	c.198	p.P66	0.55	NULL	"superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C"	-	no_errors
RUNDC2A	84127	genome.wustl.edu	36	16	12044377	12044377	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	12044377	12044377	A	G	SNP	RUNDC2A	NM_032167	human	genbank	54_36p	1	validated	missense	c.370	p.N124D	1	"HMMPfam_RUN,HMMSmart_SM00593"	"HMMPfam_RUN,HMMSmart_SM00593"	-	no_errors
MKL2	57496	genome.wustl.edu	36	16	14142032	14142043	+	In_Frame_Del	DEL	CTCAGAGTGAAG	CTCAGAGTGAAG	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CTCAGAGTGAAG	CTCAGAGTGAAG	CTCAGAGTGAAG	-	CTCAGAGTGAAG	CTCAGAGTGAAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14142032	14142043	CTCAGAGTGAAG	-	DEL	MKL2	NM_014048	human	genbank	54_36p	1	validated	in_frame_del	c.68_79	p.QSEA24in_frame_del	1.000:1.000:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	"HMMSmart_RPEL,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	"(deletion:cds_exon[14141965,14142118])"	no_errors
MKL2	57496	genome.wustl.edu	36	16	14247013	14247013	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14247013	14247013	T	G	SNP	MKL2	NM_014048	human	genbank	54_36p	1	validated	missense	c.1207	p.L403V	0.99	"HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF68906"	"HMMPfam_SAP,HMMSmart_SAP,HMMSmart_RPEL,superfamily_SSF68906"	-	no_errors
PARN	5073	genome.wustl.edu	36	16	14557046	14557046	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14557046	14557046	C	G	SNP	PARN	NM_002582	human	genbank	54_36p	-1	reviewed	missense	c.1284	p.M428I	1	NULL	"HMMPfam_CAF1,superfamily_Ribonuclease H-like,superfamily_R3H domain,HMMPfam_R3H,superfamily_RNA-binding domain RBD,HMMPfam_RNA_bind"	-	no_errors
LOC728138	728138	genome.wustl.edu	36	16	14990025	14990025	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	14990025	14990025	C	T	SNP	LOC728138	XM_001128282	human	genbank	54_36p	-1	model	silent	c.1419	p.A473	1	HMMPfam_DUF2152	HMMPfam_DUF2152	-	no_errors
C16orf45	89927	genome.wustl.edu	36	16	15516746	15516756	+	Frame_Shift_Del	DEL	CGGGAAGTCTT	CGGGAAGTCTT	-	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	CGGGAAGTCTT	CGGGAAGTCTT	CGGGAAGTCTT	-	CGGGAAGTCTT	CGGGAAGTCTT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15516746	15516756	CGGGAAGTCTT	-	DEL	C16orf45	NM_033201	human	genbank	54_36p	1	validated	frame_shift_del	c.190_200	p.R64fs	1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:0.998:0.999:1.000	NULL	NULL	"(deletion:cds_exon[15516663,15516786])"	no_errors
NDE1	54820	genome.wustl.edu	36	16	15698143	15698143	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15698143	15698143	C	A	SNP	NDE1	NM_017668	human	genbank	54_36p	1	reviewed	missense	c.872	p.S291Y	0	HMMPfam_NUDE_C	HMMPfam_NUDE_C	-	no_errors
MYH11	4629	genome.wustl.edu	36	16	15743116	15743116	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15743116	15743116	A	T	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	splice_site	c.2673+2	e21+2	1	-	-	-	no_errors
MYH11	4629	genome.wustl.edu	36	16	15748982	15748982	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	15748982	15748982	A	G	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.2378	p.I793T	1	"superfamily_SSF52540,HMMSmart_IQ"	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
IFT140	9742	genome.wustl.edu	36	16	1582488	1582488	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	1582488	1582488	G	A	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	missense	c.472	p.R158W	1	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like"	-	no_errors
ABCC1	4363	genome.wustl.edu	36	16	16080820	16080820	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	16080820	16080820	G	C	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	missense	c.2099	p.G700A	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC1	4363	genome.wustl.edu	36	16	16116180	16116180	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	16116180	16116180	C	T	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	missense	c.3136	p.R1046C	1	"HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
XYLT1	64131	genome.wustl.edu	36	16	17119016	17119016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	17119016	17119016	G	C	SNP	XYLT1	NM_022166	human	genbank	54_36p	-1	validated	missense	c.2545	p.P849A	1	NULL	HMMPfam_Branch	-	no_errors
ABCC6P1	653190	genome.wustl.edu	36	16	18493854	18493854	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	18493854	18493854	C	G	SNP	ABCC6P1	NR_003569	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.03	-	-	-	pseudogene
SYT17	51760	genome.wustl.edu	36	16	19102587	19102587	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	19102587	19102587	T	G	SNP	SYT17	NM_016524	human	genbank	54_36p	1	validated	missense	c.568	p.F190V	1	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SEPX1	51734	genome.wustl.edu	36	16	1930805	1930805	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	1930805	1930805	G	T	SNP	SEPX1	ENST00000399753	human	ensembl	54_36p	-1	known	missense	c.658	p.Q220K	1	NULL	"superfamily_Mss4_like,HMMPfam_SelR"	-	no_errors
GPR139	124274	genome.wustl.edu	36	16	19950734	19950734	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	19950734	19950734	C	A	SNP	GPR139	NM_001002911	human	genbank	54_36p	-1	validated	missense	c.886	p.A296S	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GPR139	124274	genome.wustl.edu	36	16	19950854	19950854	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	19950854	19950854	G	A	SNP	GPR139	NM_001002911	human	genbank	54_36p	-1	validated	missense	c.766	p.P256S	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
LOC100131046	100131046	genome.wustl.edu	36	16	20074259	20074259	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20074259	20074259	C	T	SNP	LOC100131046	XR_037711	human	genbank	54_36p	1	model	rna	NULL	NULL	0.13	-	-	-	pseudogene
UMOD	7369	genome.wustl.edu	36	16	20256187	20256187	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20256187	20256187	G	C	SNP	UMOD	NM_001008389	human	genbank	54_36p	-1	reviewed	missense	c.1667	p.A556G	1	"HMMPfam_Zona_pellucida,HMMSmart_SM00241"	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
ACSM5	54988	genome.wustl.edu	36	16	20356144	20356144	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20356144	20356144	T	C	SNP	ACSM5	NM_017888	human	genbank	54_36p	1	validated	missense	c.1490	p.V497A	0.99	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ACSM5	54988	genome.wustl.edu	36	16	20356181	20356181	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20356181	20356181	C	G	SNP	ACSM5	NM_017888	human	genbank	54_36p	1	validated	missense	c.1527	p.I509M	1	superfamily_Acetyl-CoA synthetase-like	"HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like"	-	no_errors
ACSM2B	348158	genome.wustl.edu	36	16	20461777	20461777	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20461777	20461777	T	G	SNP	ACSM2B	NM_001105069	human	genbank	54_36p	-1	validated	missense	c.1469	p.E490A	0.98	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
TSC2	7249	genome.wustl.edu	36	16	2076354	2076354	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2076354	2076354	T	G	SNP	TSC2	NM_000548	human	genbank	54_36p	1	reviewed	missense	c.4822	p.Y1608D	1	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	"superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20852261	20852261	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20852261	20852261	C	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.12067	p.E4023Q	1	HMMPfam_Dynein_heavy	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20882203	20882203	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20882203	20882203	C	A	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	nonsense	c.10504	p.E3502*	1	HMMPfam_Dynein_heavy	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20882273	20882273	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20882273	20882273	A	C	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.10434	p.C3478W	1	HMMPfam_Dynein_heavy	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20888760	20888761	+	Missense_Mutation	DNP	TA	TA	CT	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	TA	TA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	20888760	20888761	TA	CT	DNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.8313_8312	p.L2771Q	0.000:0.847	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20970551	20970551	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	20970551	20970551	A	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	silent	c.4179	p.Y1393	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	21000511	21000511	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	21000511	21000511	T	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.2916	p.E972D	0.39	HMMPfam_DHC_N2	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TMEM159	57146	genome.wustl.edu	36	16	21098357	21098357	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	21098357	21098357	C	T	SNP	TMEM159	NM_020422	human	genbank	54_36p	1	validated	silent	c.465	p.F155	0	NULL	NULL	-	no_errors
METTL9	51108	genome.wustl.edu	36	16	21536719	21536719	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	21536719	21536719	C	T	SNP	METTL9	NM_016025	human	genbank	54_36p	1	validated	missense	c.389	p.S130L	1	HMMPfam_DREV	"HMMPfam_DREV,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
LOC440345	440345	genome.wustl.edu	36	16	21756262	21756262	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	21756262	21756262	G	A	SNP	LOC440345	XR_015786	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	no_errors
MLST8	64223	genome.wustl.edu	36	16	2198833	2198833	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2198833	2198833	A	G	SNP	GBL	NM_022372	human	genbank	54_36p	1	validated	missense	c.935	p.Q312R	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
VWA3A	146177	genome.wustl.edu	36	16	22051738	22051738	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22051738	22051738	A	G	SNP	VWA3A	NM_173615	human	genbank	54_36p	1	validated	missense	c.1310	p.Y437C	0.96	superfamily_vWA-like	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	-	no_errors
E4F1	1877	genome.wustl.edu	36	16	2222784	2222784	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2222784	2222784	T	G	SNP	E4F1	NM_004424	human	genbank	54_36p	1	reviewed	missense	c.757	p.C253G	1	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC100131998	100131998	genome.wustl.edu	36	16	22348687	22348687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22348687	22348687	C	T	SNP	LOC100131998	XM_001725049	human	genbank	54_36p	-1	model	missense	c.152	p.G51E	1	HMMPfam_RRN3	HMMPfam_RRN3	-	pseudogene
RNPS1	10921	genome.wustl.edu	36	16	2252307	2252307	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2252307	2252307	C	T	SNP	RNPS1	NM_006711	human	genbank	54_36p	-1	reviewed	missense	c.649	p.E217K	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ABCA3	21	genome.wustl.edu	36	16	2269010	2269010	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2269010	2269010	G	A	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	silent	c.4482	p.C1494	0.99	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
HS3ST2	9956	genome.wustl.edu	36	16	22833913	22833913	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22833913	22833913	C	T	SNP	HS3ST2	NM_006043	human	genbank	54_36p	1	reviewed	silent	c.633	p.A211	1	"superfamily_SSF52540,HMMPfam_Sulfotransfer_1"	"superfamily_SSF52540,HMMPfam_Sulfotransfer_1"	-	no_errors
ABCA3	21	genome.wustl.edu	36	16	2298452	2298452	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2298452	2298452	C	T	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.G429S	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
USP31	57478	genome.wustl.edu	36	16	22987633	22987633	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	22987633	22987633	C	T	SNP	USP31	NM_020718	human	genbank	54_36p	-1	validated	silent	c.3294	p.E1098	0.81	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
SCNN1G	6340	genome.wustl.edu	36	16	23113021	23113021	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23113021	23113021	C	T	SNP	SCNN1G	NM_001039	human	genbank	54_36p	1	validated	missense	c.838	p.H280Y	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
SCNN1B	6338	genome.wustl.edu	36	16	23296016	23296016	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23296016	23296016	G	A	SNP	SCNN1B	NM_000336	human	genbank	54_36p	1	validated	missense	c.1300	p.V434M	0	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23614081	23614081	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23614081	23614081	C	A	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	nonsense	c.1885	p.E629*	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23619433	23619433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23619433	23619433	C	T	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	missense	c.1597	p.G533R	0	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564"	-	no_errors
ERN2	10595	genome.wustl.edu	36	16	23623881	23623881	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	23623881	23623881	G	A	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	silent	c.822	p.G274	1	superfamily_Quinoprotein alcohol dehydrogenase-like	"HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564"	-	no_errors
PRKCB	5579	genome.wustl.edu	36	16	24138795	24138795	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24138795	24138795	G	A	SNP	PRKCB	NM_212535	human	genbank	54_36p	1	reviewed	missense	c.1876	p.D626N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00133,HMMPfam_Pkinase_C"	###############################################################################################################################################################################################################################################################	-	no_errors
RBBP6	5930	genome.wustl.edu	36	16	24467772	24467772	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24467772	24467772	G	A	SNP	RBBP6	NM_006910	human	genbank	54_36p	1	reviewed	missense	c.272	p.R91Q	1	NULL	"HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00184"	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24708914	24708914	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24708914	24708914	C	T	SNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.1450	p.R484C	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD"	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24710529	24710530	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24710529	24710530	GG	TT	DNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.3065_3066	p.W1022F	1.000:1.000	HMMPfam_Ago_hook	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD"	-	no_errors
TNRC6A	27327	genome.wustl.edu	36	16	24712301	24712301	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24712301	24712301	G	T	SNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.3182	p.G1061V	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD"	-	no_errors
SLC5A11	115584	genome.wustl.edu	36	16	24809842	24809842	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	24809842	24809842	G	T	SNP	SLC5A11	NM_052944	human	genbank	54_36p	1	provisional	silent	c.816	p.P272	0.16	HMMPfam_SSF	HMMPfam_SSF	-	no_errors
ZKSCAN2	342357	genome.wustl.edu	36	16	25163070	25163070	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	25163070	25163070	C	T	SNP	ZKSCAN2	NM_001012981	human	genbank	54_36p	-1	validated	silent	c.1518	p.K506	1	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZKSCAN2	342357	genome.wustl.edu	36	16	25174196	25174196	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	25174196	25174196	G	C	SNP	ZKSCAN2	NM_001012981	human	genbank	54_36p	-1	validated	missense	c.418	p.R140G	0	HMMSmart_SM00431	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
IL21R	50615	genome.wustl.edu	36	16	27364072	27364072	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	27364072	27364072	G	A	SNP	IL21R	NM_021798	human	genbank	54_36p	1	reviewed	nonsense	c.759	p.W253*	0.08	NULL	"superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
GTF3C1	2975	genome.wustl.edu	36	16	27416611	27416611	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	27416611	27416611	C	T	SNP	GTF3C1	NM_001520	human	genbank	54_36p	-1	validated	missense	c.2198	p.G733E	0	NULL	HMMPfam_B-block_TFIIIC	-	no_errors
KIAA0556	23247	genome.wustl.edu	36	16	27696440	27696440	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	27696440	27696440	G	T	SNP	KIAA0556	NM_015202	human	genbank	54_36p	1	validated	silent	c.4560	p.V1520	1	NULL	"superfamily_Galactose-binding domain-like,PatternScan_AKH"	-	no_errors
XPO6	23214	genome.wustl.edu	36	16	28030740	28030740	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	28030740	28030740	C	T	SNP	XPO6	NM_015171	human	genbank	54_36p	-1	provisional	missense	c.2240	p.R747H	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_Xpo1"	-	no_errors
XPO6	23214	genome.wustl.edu	36	16	28099853	28099853	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	28099853	28099853	C	G	SNP	XPO6	NM_015171	human	genbank	54_36p	-1	provisional	missense	c.4	p.A2P	1	NULL	"HMMPfam_IBN_N,HMMPfam_Xpo1,superfamily_ARM repeat"	-	no_errors
ATXN2L	11273	genome.wustl.edu	36	16	28753429	28753429	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	28753429	28753429	C	G	SNP	ATXN2L	NM_148414	human	genbank	54_36p	1	reviewed	missense	c.2347	p.P783A	0.03	NULL	"HMMPfam_LsmAD,HMMPfam_PAM2"	-	no_errors
ATP2A1	487	genome.wustl.edu	36	16	28813022	28813022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	28813022	28813022	G	A	SNP	ATP2A1	NM_173201	human	genbank	54_36p	1	reviewed	missense	c.1141	p.E381K	0.98	"superfamily_Calcium ATPase transmembrane domain M,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	###############################################################################################################################################################################################################################################################	-	no_errors
CD19	930	genome.wustl.edu	36	16	28851244	28851244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	28851244	28851244	G	T	SNP	CD19	NM_001770	human	genbank	54_36p	1	reviewed	missense	c.165	p.E55D	0	"superfamily_SSF48726,HMMSmart_IG"	"superfamily_SSF48726,HMMSmart_IG"	-	no_errors
LOC728888	728888	genome.wustl.edu	36	16	29302839	29302839	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	29302839	29302839	G	A	SNP	LOC728888	XR_015889	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	no_errors
ENSG00000169203	0	genome.wustl.edu	36	16	29404433	29404433	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	29404433	29404433	C	G	SNP	ENSG00000169203	ENST00000354563	human	ensembl	54_36p	-1	known	missense	c.343	p.V115L	0	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
SEZ6L2	26470	genome.wustl.edu	36	16	29816744	29816744	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	29816744	29816744	A	T	SNP	SEZ6L2	NM_201575	human	genbank	54_36p	-1	validated	missense	c.142	p.S48T	0.94	NULL	"superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB"	-	no_errors
DOC2A	8448	genome.wustl.edu	36	16	29928083	29928083	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	29928083	29928083	C	G	SNP	DOC2A	NM_003586	human	genbank	54_36p	-1	reviewed	missense	c.358	p.D120H	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
DOC2A	8448	genome.wustl.edu	36	16	29928851	29928851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	29928851	29928851	G	A	SNP	DOC2A	NM_003586	human	genbank	54_36p	-1	reviewed	missense	c.194	p.A65V	0.2	NULL	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
TBX6	6911	genome.wustl.edu	36	16	30005602	30005602	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30005602	30005602	C	A	SNP	TBX6	NM_004608	human	genbank	54_36p	-1	reviewed	missense	c.911	p.G304V	1	NULL	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
CD2BP2	10421	genome.wustl.edu	36	16	30272056	30272056	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30272056	30272056	C	G	SNP	CD2BP2	NM_006110	human	genbank	54_36p	-1	reviewed	missense	c.862	p.E288Q	1	"superfamily_GYF domain,HMMPfam_GYF,HMMSmart_SM00444"	"superfamily_GYF domain,HMMPfam_GYF,HMMSmart_SM00444"	-	no_errors
SEPT1	1731	genome.wustl.edu	36	16	30298346	30298346	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30298346	30298346	G	C	SNP	SEPT1	NM_052838	human	genbank	54_36p	-1	reviewed	missense	c.671	p.P224R	1	HMMPfam_Septin	"superfamily_SSF52540,HMMPfam_Septin"	-	no_errors
ITGAL	3683	genome.wustl.edu	36	16	30394135	30394135	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30394135	30394135	G	A	SNP	ITGAL	NM_002209	human	genbank	54_36p	1	reviewed	missense	c.172	p.V58M	1	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ZNF764	92595	genome.wustl.edu	36	16	30474709	30474709	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30474709	30474709	G	A	SNP	ZNF764	NM_033410	human	genbank	54_36p	-1	provisional	silent	c.534	p.Y178	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF785	146540	genome.wustl.edu	36	16	30501764	30501764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30501764	30501764	G	A	SNP	ZNF785	NM_152458	human	genbank	54_36p	-1	provisional	missense	c.836	p.T279M	0.83	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FBRS	64319	genome.wustl.edu	36	16	30588225	30588225	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30588225	30588225	G	T	SNP	FBRS	NM_001105079	human	genbank	54_36p	1	validated	missense	c.1141	p.G381C	0.91	NULL	NULL	-	no_errors
IL32	9235	genome.wustl.edu	36	16	3059304	3059304	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	3059304	3059304	G	C	SNP	IL32	NM_001012631	human	genbank	54_36p	1	reviewed	missense	c.514	p.D172H	0	NULL	NULL	-	no_errors
SRCAP	10847	genome.wustl.edu	36	16	30639033	30639033	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	30639033	30639033	C	T	SNP	SRCAP	NM_006662	human	genbank	54_36p	1	validated	missense	c.2867	p.S956F	1	NULL	"HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_AT_hook,HMMSmart_SM00384"	-	no_errors
ZSCAN10	84891	genome.wustl.edu	36	16	3082123	3082123	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3082123	3082123	T	C	SNP	ZSCAN10	NM_032805	human	genbank	54_36p	-1	provisional	missense	c.427	p.R143G	0	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SETD1A	9739	genome.wustl.edu	36	16	30884446	30884446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	30884446	30884446	C	T	SNP	SETD1A	NM_014712	human	genbank	54_36p	1	provisional	silent	c.1743	p.D581	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET"	-	no_errors
MYST1	84148	genome.wustl.edu	36	16	31039052	31039052	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	31039052	31039052	C	G	SNP	MYST1	NM_182958	human	genbank	54_36p	1	provisional	missense	c.256	p.R86G	1	HMMSmart_SM00298	"HMMSmart_SM00298,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
PRSS36	146547	genome.wustl.edu	36	16	31067427	31067427	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	31067427	31067427	C	G	SNP	PRSS36	NM_173502	human	genbank	54_36p	-1	validated	missense	c.343	p.D115H	0.03	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
ITGAX	3687	genome.wustl.edu	36	16	31280662	31280662	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	31280662	31280662	G	A	SNP	ITGAX	NM_000887	human	genbank	54_36p	1	reviewed	silent	c.1017	p.T339	0.12	superfamily_SSF69318	"superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ITGAX	3687	genome.wustl.edu	36	16	31282089	31282089	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	31282089	31282089	A	C	SNP	ITGAX	NM_000887	human	genbank	54_36p	1	reviewed	missense	c.1603	p.K535Q	0.2	"HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318"	"HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318"	-	no_errors
ITGAD	3681	genome.wustl.edu	36	16	31320973	31320973	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	31320973	31320973	T	C	SNP	ITGAD	NM_005353	human	genbank	54_36p	1	validated	missense	c.464	p.I155T	1	"superfamily_Integrin alpha N-terminal domain,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
C16orf58	64755	genome.wustl.edu	36	16	31412598	31412598	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	31412598	31412598	C	T	SNP	C16orf58	NM_022744	human	genbank	54_36p	-1	predicted	missense	c.785	p.G262E	0	HMMPfam_DUF647	HMMPfam_DUF647	-	no_errors
ZNF267	10308	genome.wustl.edu	36	16	31834750	31834750	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	31834750	31834750	G	C	SNP	ZNF267	NM_003414	human	genbank	54_36p	1	validated	missense	c.1679	p.S560T	0.01	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
LOC647157	647157	genome.wustl.edu	36	16	32345595	32345595	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	32345595	32345595	A	T	SNP	LOC647157	XR_017478	human	genbank	54_36p	1	model	rna	NULL	NULL	0.97	-	-	-	pseudogene
MEFV	4210	genome.wustl.edu	36	16	3239649	3239649	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3239649	3239649	C	T	SNP	MEFV	NM_000243	human	genbank	54_36p	-1	reviewed	missense	c.1043	p.R348H	0	NULL	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
ZNF263	10127	genome.wustl.edu	36	16	3274005	3274005	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3274005	3274005	C	T	SNP	ZNF263	NM_005741	human	genbank	54_36p	1	validated	silent	c.186	p.L62	0.98	"HMMPfam_SCAN,HMMSmart_SM00431"	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
UBE2MP1	606551	genome.wustl.edu	36	16	34261983	34261983	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	34261983	34261983	G	C	SNP	UBE2MP1	NR_002837	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
CLUAP1	23059	genome.wustl.edu	36	16	3513216	3513216	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3513216	3513216	C	T	SNP	CLUAP1	NM_015041	human	genbank	54_36p	1	provisional	silent	c.771	p.D257	0.13	HMMPfam_Cluap1	HMMPfam_Cluap1	-	no_errors
SLX4	84464	genome.wustl.edu	36	16	3579356	3579356	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3579356	3579356	C	A	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	missense	c.4284	p.W1428C	0.08	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
SLX4	84464	genome.wustl.edu	36	16	3587923	3587923	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3587923	3587923	G	A	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	silent	c.1242	p.D414	0	NULL	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	-	no_errors
CREBBP	1387	genome.wustl.edu	36	16	3730521	3730521	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3730521	3730521	A	G	SNP	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	missense	c.4013	p.L1338S	0.99	HMMPfam_DUF906	###############################################################################################################################################################################################################################################################	-	no_errors
CREBBP	1387	genome.wustl.edu	36	16	3760937	3760943	+	Frame_Shift_Del	DEL	GAGGCCC	GAGGCCC	-	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	GAGGCCC	GAGGCCC	GAGGCCC	-	GAGGCCC	GAGGCCC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3760937	3760943	GAGGCCC	-	DEL	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2515_2509	p.G837fs	0.954:0.932:1.000:1.000:0.991:1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[3760572,3760988])"	no_errors
ADCY9	115	genome.wustl.edu	36	16	3955909	3955909	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3955909	3955909	T	A	SNP	ADCY9	NM_001116	human	genbank	54_36p	-1	reviewed	missense	c.3930	p.R1310S	0.07	NULL	"HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ADCY9	115	genome.wustl.edu	36	16	3997506	3997506	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	3997506	3997506	C	A	SNP	ADCY9	NM_001116	human	genbank	54_36p	-1	reviewed	missense	c.1748	p.C583F	1	NULL	"HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
MYLK3	91807	genome.wustl.edu	36	16	45304156	45304156	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	45304156	45304156	G	A	SNP	MYLK3	NM_182493	human	genbank	54_36p	-1	validated	silent	c.2019	p.F673	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ABCC12	94160	genome.wustl.edu	36	16	46698736	46698736	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	46698736	46698736	G	A	SNP	ABCC12	NM_033226	human	genbank	54_36p	-1	reviewed	missense	c.2473	p.R825W	0.97	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
N4BP1	9683	genome.wustl.edu	36	16	47152712	47152712	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	47152712	47152712	T	C	SNP	N4BP1	NM_153029	human	genbank	54_36p	-1	validated	missense	c.1343	p.K448R	1	NULL	NULL	-	no_errors
ZNF500	26048	genome.wustl.edu	36	16	4752611	4752611	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	4752611	4752611	T	A	SNP	ZNF500	NM_021646	human	genbank	54_36p	-1	validated	missense	c.562	p.R188W	0.18	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HEATR3	55027	genome.wustl.edu	36	16	48666996	48666996	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	48666996	48666996	G	T	SNP	HEATR3	NM_182922	human	genbank	54_36p	1	provisional	missense	c.636	p.Q212H	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
PPL	5493	genome.wustl.edu	36	16	4877136	4877136	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	4877136	4877136	C	T	SNP	PPL	NM_002705	human	genbank	54_36p	-1	reviewed	splice_site	c.2607+1	e21+1	1	-	-	-	no_errors
RHBDF1	64285	genome.wustl.edu	36	16	49279	49279	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	49279	49279	G	A	SNP	RHBDF1	NM_022450	human	genbank	54_36p	-1	validated	silent	c.1962	p.Y654	1	HMMPfam_Rhomboid	HMMPfam_Rhomboid	-	no_errors
NOD2	64127	genome.wustl.edu	36	16	49303034	49303034	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	49303034	49303034	C	T	SNP	NOD2	NM_022162	human	genbank	54_36p	1	reviewed	nonsense	c.1711	p.Q571*	0.48	NULL	"HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1"	-	no_errors
SALL1	6299	genome.wustl.edu	36	16	49731904	49731904	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	49731904	49731904	G	T	SNP	SALL1	NM_002968	human	genbank	54_36p	-1	reviewed	missense	c.1730	p.P577H	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
SEC14L5	9717	genome.wustl.edu	36	16	4995935	4995935	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	4995935	4995935	A	G	SNP	SEC14L5	NM_014692	human	genbank	54_36p	1	validated	missense	c.1322	p.E441G	1	"HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO"	"HMMPfam_PRELI,superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576"	-	no_errors
RBL2	5934	genome.wustl.edu	36	16	52081562	52081562	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	52081562	52081562	G	T	SNP	RBL2	NM_005611	human	genbank	54_36p	1	validated	missense	c.3269	p.S1090I	1	NULL	"HMMSmart_CYCLIN,HMMPfam_RB_A,superfamily_Cyclin_like,HMMPfam_RB_B"	-	no_errors
RPGRIP1L	23322	genome.wustl.edu	36	16	52249859	52249859	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	52249859	52249859	C	G	SNP	RPGRIP1L	NM_015272	human	genbank	54_36p	-1	reviewed	missense	c.1369	p.D457H	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
RPGRIP1L	23322	genome.wustl.edu	36	16	52283700	52283700	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	52283700	52283700	C	A	SNP	RPGRIP1L	NM_015272	human	genbank	54_36p	-1	reviewed	missense	c.308	p.G103V	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
IRX3	79191	genome.wustl.edu	36	16	52876606	52876606	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	16	52876606	52876606	C	G	SNP	IRX3	NM_024336	human	genbank	54_36p	-1	provisional	missense	c.688	p.E230Q	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMSmart_IRO"	-	no_errors
MMP2	4313	genome.wustl.edu	36	16	54089739	54089739	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	54089739	54089739	G	A	SNP	MMP2	NM_004530	human	genbank	54_36p	1	reviewed	silent	c.1647	p.E549	1	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	###############################################################################################################################################################################################################################################################	-	no_errors
LOC390732	390732	genome.wustl.edu	36	16	54319583	54319583	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	54319583	54319583	G	A	SNP	LOC390732	XR_016696	human	genbank	54_36p	1	model	rna	NULL	NULL	0.07	-	-	-	pseudogene
CES1	1066	genome.wustl.edu	36	16	54415073	54415073	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	54415073	54415073	C	A	SNP	CES1	NM_001025195	human	genbank	54_36p	-1	reviewed	silent	c.429	p.G143	0.99	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1"	-	no_errors
BBS2	583	genome.wustl.edu	36	16	55077050	55077050	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55077050	55077050	T	C	SNP	BBS2	NM_031885	human	genbank	54_36p	-1	reviewed	missense	c.2012	p.N671S	1	NULL	"superfamily_WD40 repeat-like,HMMPfam_FG-GAP"	-	no_errors
MT1M	4499	genome.wustl.edu	36	16	55224761	55224761	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55224761	55224761	T	C	SNP	MT1M	NM_176870	human	genbank	54_36p	1	validated	missense	c.37	p.C13R	0.98	"HMMPfam_Metallothio,superfamily_Metallothionein_sfam,PatternScan_METALLOTHIONEIN_VRT"	"HMMPfam_Metallothio,superfamily_Metallothionein_sfam,PatternScan_METALLOTHIONEIN_VRT"	-	no_errors
NUP93	9688	genome.wustl.edu	36	16	55423717	55423717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55423717	55423717	G	T	SNP	NUP93	NM_014669	human	genbank	54_36p	1	validated	missense	c.1261	p.V421L	1	HMMPfam_Nic96	HMMPfam_Nic96	-	no_errors
SLC12A3	6559	genome.wustl.edu	36	16	55471577	55471577	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55471577	55471577	G	T	SNP	SLC12A3	NM_000339	human	genbank	54_36p	1	reviewed	missense	c.1478	p.G493V	1	HMMPfam_AA_permease	"HMMPfam_AA_permease_N,HMMPfam_AA_permease"	-	no_errors
NLRC5	84166	genome.wustl.edu	36	16	55627535	55627535	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55627535	55627535	G	A	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	missense	c.2650	p.D884N	0.98	"superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1"	-	no_errors
NLRC5	84166	genome.wustl.edu	36	16	55646900	55646900	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55646900	55646900	G	A	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	silent	c.3714	p.L1238	0.24	superfamily_RNI-like	"HMMPfam_LRR_1,HMMSmart_SM00368,HMMSmart_SM00367,HMMPfam_NACHT,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRC5	84166	genome.wustl.edu	36	16	55656696	55656696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55656696	55656696	G	T	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	missense	c.4226	p.S1409I	0.42	superfamily_RNI-like	"HMMPfam_LRR_1,HMMSmart_SM00368,HMMSmart_SM00367,HMMPfam_NACHT,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SETD6	79918	genome.wustl.edu	36	16	57109887	57109887	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	57109887	57109887	G	A	SNP	SETD6	NM_024860	human	genbank	54_36p	1	provisional	missense	c.983	p.G328E	1	superfamily_RuBisCo LSMT C-terminal substrate-binding domain	"superfamily_SET domain,HMMPfam_SET,superfamily_RuBisCo LSMT C-terminal substrate-binding domain"	-	no_errors
CNOT1	23019	genome.wustl.edu	36	16	57148389	57148389	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	57148389	57148389	A	G	SNP	CNOT1	NM_016284	human	genbank	54_36p	-1	validated	missense	c.2342	p.L781P	1	NULL	"HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
CDH8	1006	genome.wustl.edu	36	16	60245088	60245088	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	60245088	60245088	G	A	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	silent	c.2325	p.Y775	1	HMMPfam_Cadherin_C	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH8	1006	genome.wustl.edu	36	16	60247008	60247008	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	60247008	60247008	G	T	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	silent	c.1773	p.T591	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH8	1006	genome.wustl.edu	36	16	60408994	60408994	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	60408994	60408994	C	A	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	silent	c.1167	p.P389	0.27	"HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH8	1006	genome.wustl.edu	36	16	60612766	60612766	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	60612766	60612766	G	T	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	missense	c.43	p.P15T	1	NULL	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
LOC729217	729217	genome.wustl.edu	36	16	62851823	62851823	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	62851823	62851823	G	A	SNP	LOC729217	XR_015483	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
LOC100131582	100131582	genome.wustl.edu	36	16	644991	644991	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	644991	644991	C	T	SNP	LOC100131582	XM_001720183	human	genbank	54_36p	-1	model	missense	c.443	p.S148N	0	NULL	NULL	-	no_errors
CMTM2	146225	genome.wustl.edu	36	16	65178426	65178426	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	65178426	65178426	G	C	SNP	CMTM2	NM_144673	human	genbank	54_36p	1	reviewed	missense	c.470	p.C157S	0	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
CDH16	1014	genome.wustl.edu	36	16	65504166	65504166	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	65504166	65504166	G	C	SNP	CDH16	NM_004062	human	genbank	54_36p	-1	reviewed	missense	c.1184	p.P395R	0.01	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1"	-	no_errors
CES3	23491	genome.wustl.edu	36	16	65555855	65555855	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	65555855	65555855	G	T	SNP	CES3	NM_024922	human	genbank	54_36p	1	validated	missense	c.655	p.D219Y	0.89	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_1"	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_1"	-	no_errors
EXOC3L	283849	genome.wustl.edu	36	16	65778461	65778461	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	65778461	65778461	A	C	SNP	EXOC3L	NM_178516	human	genbank	54_36p	-1	validated	missense	c.1122	p.I374M	0.5	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors
FHOD1	29109	genome.wustl.edu	36	16	65828778	65828778	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	65828778	65828778	C	A	SNP	FHOD1	NM_013241	human	genbank	54_36p	-1	reviewed	silent	c.858	p.A286	0.19	NULL	"superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
SLC9A5	6553	genome.wustl.edu	36	16	65855797	65855797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	65855797	65855797	G	A	SNP	SLC9A5	ENST00000360183	human	ensembl	54_36p	1	known	missense	c.374	p.R125H	0.61	NULL	NULL	-	no_start_codon
CTCF	10664	genome.wustl.edu	36	16	66203446	66203446	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	66203446	66203446	G	C	SNP	CTCF	NM_006565	human	genbank	54_36p	1	reviewed	missense	c.873	p.E291D	1	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
SLC7A6OS	84138	genome.wustl.edu	36	16	66895521	66895521	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	66895521	66895521	T	C	SNP	SLC7A6OS	NM_032178	human	genbank	54_36p	-1	provisional	missense	c.587	p.Y196C	1	NULL	NULL	-	no_errors
ZFP90	146198	genome.wustl.edu	36	16	67155003	67155003	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	67155003	67155003	A	T	SNP	ZFP90	NM_133458	human	genbank	54_36p	1	provisional	missense	c.812	p.E271V	0.16	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_ZINC_PROTEASE"	-	no_errors
CDH3	1001	genome.wustl.edu	36	16	67276041	67276041	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	67276041	67276041	G	A	SNP	CDH3	NM_001793	human	genbank	54_36p	1	reviewed	missense	c.1237	p.E413K	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
WDR24	84219	genome.wustl.edu	36	16	679276	679276	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	679276	679276	C	T	SNP	WDR24	NM_032259	human	genbank	54_36p	-1	provisional	silent	c.366	p.T122	0.89	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
NFAT5	10725	genome.wustl.edu	36	16	68159941	68159941	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	68159941	68159941	G	A	SNP	NFAT5	NM_138713	human	genbank	54_36p	1	reviewed	missense	c.116	p.G39E	1	NULL	"superfamily_p53-like transcription factors,HMMPfam_RHD,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG"	-	no_errors
SF3B3	23450	genome.wustl.edu	36	16	69133129	69133129	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	69133129	69133129	C	T	SNP	SF3B3	NM_012426	human	genbank	54_36p	1	reviewed	missense	c.1124	p.S375L	1	NULL	"PatternScan_IG_MHC,HMMPfam_CPSF_A"	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69535298	69535298	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	69535298	69535298	G	C	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.6584	p.P2195R	0.49	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69660861	69660861	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	69660861	69660861	A	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.1784	p.I595N	1	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PMFBP1	83449	genome.wustl.edu	36	16	70731875	70731875	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	70731875	70731875	C	T	SNP	PMFBP1	NM_031293	human	genbank	54_36p	-1	provisional	silent	c.744	p.K248	1	NULL	NULL	-	no_errors
ZFHX3	463	genome.wustl.edu	36	16	71379382	71379382	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	71379382	71379382	A	T	SNP	ZFHX3	NM_006885	human	genbank	54_36p	-1	validated	missense	c.10294	p.S3432T	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HTA	283902	genome.wustl.edu	36	16	71684605	71684605	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	71684605	71684605	T	C	SNP	HTA	NM_001101347	human	genbank	54_36p	1	predicted	missense	c.149	p.M50T	0	NULL	NULL	-	no_errors
LOC441506	441506	genome.wustl.edu	36	16	72531969	72531969	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	72531969	72531969	T	C	SNP	LOC441506	XR_017565	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.57	-	-	-	pseudogene
GLG1	2734	genome.wustl.edu	36	16	73043497	73043497	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	73043497	73043497	T	G	SNP	GLG1	NM_012201	human	genbank	54_36p	-1	validated	missense	c.3570	p.K1190N	0.01	NULL	HMMPfam_Cys_rich_FGFR	-	no_errors
KARS	3735	genome.wustl.edu	36	16	74220871	74220871	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	74220871	74220871	C	T	SNP	KARS	NM_005548	human	genbank	54_36p	-1	reviewed	silent	c.1494	p.A498	1	"HMMPfam_tRNA-synt_2,superfamily_SSF55681"	"superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_SSF55681"	-	no_errors
GAN	8139	genome.wustl.edu	36	16	79942739	79942739	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	79942739	79942739	T	C	SNP	GAN	NM_022041	human	genbank	54_36p	1	reviewed	missense	c.218	p.I73T	1	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
GAN	8139	genome.wustl.edu	36	16	79948921	79948921	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	79948921	79948921	G	A	SNP	GAN	NM_022041	human	genbank	54_36p	1	reviewed	missense	c.857	p.R286Q	1	"HMMSmart_Kelch,superfamily_Gal_oxid_central"	"HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
LOC729313	729313	genome.wustl.edu	36	16	80067560	80067560	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	80067560	80067560	G	A	SNP	LOC729313	XR_015971	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
PLCG2	5336	genome.wustl.edu	36	16	80528917	80528917	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	80528917	80528917	T	G	SNP	PLCG2	NM_002661	human	genbank	54_36p	1	validated	missense	c.3106	p.Y1036D	1	"superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc"	###############################################################################################################################################################################################################################################################	-	no_errors
HSD17B2	3294	genome.wustl.edu	36	16	80689396	80689396	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	80689396	80689396	C	T	SNP	HSD17B2	NM_002153	human	genbank	54_36p	1	validated	missense	c.1018	p.P340S	0.11	superfamily_NAD(P)-binding Rossmann-fold domains	"PatternScan_2FE2S_FER_1,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
CDH13	1012	genome.wustl.edu	36	16	81808467	81808467	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	81808467	81808467	G	T	SNP	CDH13	NM_001257	human	genbank	54_36p	1	reviewed	missense	c.500	p.R167M	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1"	-	no_errors
CDH13	1012	genome.wustl.edu	36	16	81808476	81808476	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	81808476	81808476	G	T	SNP	CDH13	NM_001257	human	genbank	54_36p	1	reviewed	missense	c.509	p.R170M	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin"	-	no_errors
NECAB2	54550	genome.wustl.edu	36	16	82592958	82592958	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82592958	82592958	G	A	SNP	NECAB2	NM_019065	human	genbank	54_36p	1	provisional	silent	c.1068	p.A356	0.7	"superfamily_Dimer_A_B_barrel,HMMPfam_ABM"	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Dimer_A_B_barrel,HMMPfam_ABM"	-	no_errors
NECAB2	54550	genome.wustl.edu	36	16	82592983	82592983	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82592983	82592983	C	T	SNP	NECAB2	NM_019065	human	genbank	54_36p	1	provisional	silent	c.1093	p.L365	1	superfamily_Dimer_A_B_barrel	"HMMSmart_EFh,HMMPfam_ABM,superfamily_Dimer_A_B_barrel,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473"	-	no_errors
MBTPS1	8720	genome.wustl.edu	36	16	82672933	82672933	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82672933	82672933	G	C	SNP	MBTPS1	NM_003791	human	genbank	54_36p	-1	reviewed	silent	c.1368	p.V456	1	"superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8"	"PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER"	-	no_errors
MBTPS1	8720	genome.wustl.edu	36	16	82684840	82684840	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82684840	82684840	G	T	SNP	MBTPS1	NM_003791	human	genbank	54_36p	-1	reviewed	missense	c.713	p.T238N	1	"HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53"	"HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53"	-	no_errors
LRRC50	123872	genome.wustl.edu	36	16	82745706	82745706	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82745706	82745706	G	C	SNP	LRRC50	NM_178452	human	genbank	54_36p	1	validated	missense	c.376	p.E126Q	1	superfamily_Outer arm dynein light chain 1	"superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1"	-	no_errors
LRRC50	123872	genome.wustl.edu	36	16	82745725	82745725	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82745725	82745725	G	A	SNP	LRRC50	NM_178452	human	genbank	54_36p	1	validated	missense	c.395	p.R132H	1	"HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1"	"HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1"	-	no_errors
LRRC50	123872	genome.wustl.edu	36	16	82761021	82761021	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82761021	82761021	G	A	SNP	LRRC50	NM_178452	human	genbank	54_36p	1	validated	silent	c.1086	p.K362	0.01	NULL	"HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1"	-	no_errors
LRRC50	123872	genome.wustl.edu	36	16	82761031	82761031	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	82761031	82761031	C	A	SNP	LRRC50	NM_178452	human	genbank	54_36p	1	validated	missense	c.1096	p.P366T	0	NULL	"HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1"	-	no_errors
KIAA0182	23199	genome.wustl.edu	36	16	84262153	84262153	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	84262153	84262153	C	T	SNP	KIAA0182	NM_014615	human	genbank	54_36p	1	validated	missense	c.3467	p.A1156V	1	NULL	NULL	-	no_errors
IRF8	3394	genome.wustl.edu	36	16	84502761	84502761	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	84502761	84502761	A	G	SNP	IRF8	NM_002163	human	genbank	54_36p	1	reviewed	missense	c.443	p.K148R	1	NULL	"HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,HMMPfam_IRF-3,superfamily_SMAD_FHA"	-	no_errors
TMEM186	25880	genome.wustl.edu	36	16	8797350	8797350	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	8797350	8797350	C	T	SNP	TMEM186	NM_015421	human	genbank	54_36p	-1	validated	missense	c.602	p.R201H	0	NULL	NULL	-	no_errors
SPG7	6687	genome.wustl.edu	36	16	88130791	88130791	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	88130791	88130791	C	T	SNP	SPG7	NM_199367	human	genbank	54_36p	1	reviewed	missense	c.1442	p.S481L	0	NULL	"HMMPfam_FtsH_ext,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA"	-	no_errors
TUBB3	10381	genome.wustl.edu	36	16	88527421	88527421	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	88527421	88527421	G	A	SNP	TUBB3	NM_006086	human	genbank	54_36p	1	validated	missense	c.211	p.G71R	1	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
PRDM7	11105	genome.wustl.edu	36	16	88655965	88655965	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	88655965	88655965	C	T	SNP	PRDM7	NM_001098173	human	genbank	54_36p	-1	reviewed	silent	c.747	p.G249	0.43	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,HMMPfam_SSXRD"	-	no_errors
USP7	7874	genome.wustl.edu	36	16	8898375	8898375	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	8898375	8898375	T	A	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	missense	c.2801	p.K934I	1	NULL	"superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP7	7874	genome.wustl.edu	36	16	8931755	8931755	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	8931755	8931755	G	C	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	missense	c.80	p.A27G	1	NULL	"HMMPfam_UCH,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001"	-	no_errors
GRIN2A	2903	genome.wustl.edu	36	16	9765286	9765286	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	16	9765286	9765286	G	A	SNP	GRIN2A	NM_000833	human	genbank	54_36p	-1	reviewed	nonsense	c.3616	p.R1206*	0.57	HMMPfam_NMDAR2_C	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C"	-	no_errors
GRIN2A	2903	genome.wustl.edu	36	16	9799636	9799636	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	9799636	9799636	A	G	SNP	GRIN2A	NM_000833	human	genbank	54_36p	-1	reviewed	silent	c.2355	p.D785	1	"HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II"	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_NMDAR2_C,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
GRIN2A	2903	genome.wustl.edu	36	16	9842061	9842061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	9842061	9842061	C	T	SNP	GRIN2A	NM_000833	human	genbank	54_36p	-1	reviewed	missense	c.1595	p.G532E	1	"HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II"	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_NMDAR2_C,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
C1orf226	400793	genome.wustl.edu	36	1	160619999	160619999	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	160619999	160619999	C	G	SNP	C1orf226	NM_001085375	human	genbank	54_36p	1	validated	missense	c.721	p.L241V	1	NULL	NULL	-	no_errors
LOC100132857	100132857	genome.wustl.edu	36	X	16402669	16402669	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	16402669	16402669	G	A	SNP	LOC100132857	XR_037457	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000214210	0	genome.wustl.edu	36	3	165202307	165202307	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	165202307	165202307	C	A	SNP	ENSG00000214210	ENST00000397815	human	ensembl	54_36p	-1	known	missense	c.354	p.Q118H	0	HMMPfam_Neugrin	HMMPfam_Neugrin	-	no_start_codon
ESPNP	284729	genome.wustl.edu	36	1	16903202	16903202	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	16903202	16903202	G	T	SNP	ESPNP	ENST00000270691	human	ensembl	54_36p	-1	known	silent	c.721	p.R241	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_WH2,HMMSmart_SM00246"	-	no_start_codon
MYH13	8735	genome.wustl.edu	36	17	10153456	10153456	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10153456	10153456	G	A	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	silent	c.4989	p.D1663	0.99	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
MYH13	8735	genome.wustl.edu	36	17	10156792	10156793	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	10156792	10156793	-	T	INS	MYH13	NM_003802	human	genbank	54_36p	-1	validated	frame_shift_ins	c.4189_4188	p.L1396fs	1.000:0.999	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH13	8735	genome.wustl.edu	36	17	10208484	10208484	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10208484	10208484	C	G	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.89	p.R30P	0.13	NULL	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH8	4626	genome.wustl.edu	36	17	10244527	10244527	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10244527	10244527	G	T	SNP	MYH8	NM_002472	human	genbank	54_36p	-1	validated	missense	c.3640	p.Q1214K	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH8	4626	genome.wustl.edu	36	17	10244771	10244771	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10244771	10244771	T	A	SNP	MYH8	NM_002472	human	genbank	54_36p	-1	validated	silent	c.3396	p.R1132	1	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10291097	10291097	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10291097	10291097	C	A	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.5127	p.E1709D	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10291102	10291102	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10291102	10291102	G	C	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.5122	p.Q1708E	1	HMMPfam_Myosin_tail_1	"HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10297840	10297840	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10297840	10297840	T	G	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.2779	p.T927P	0.96	NULL	"HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10303433	10303433	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10303433	10303433	A	C	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.1447	p.F483V	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH4	4622	genome.wustl.edu	36	17	10304029	10304029	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10304029	10304029	C	G	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.1381	p.G461R	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10340336	10340336	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10340336	10340336	G	A	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.4912	p.R1638C	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10341378	10341378	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10341378	10341378	T	C	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	silent	c.4482	p.E1494	1	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10345698	10345698	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10345698	10345698	T	C	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.3286	p.S1096G	1	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10349467	10349467	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10349467	10349467	T	A	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.2261	p.D754V	0.98	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH1	4619	genome.wustl.edu	36	17	10356225	10356225	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10356225	10356225	T	C	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.1157	p.K386R	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH2	4620	genome.wustl.edu	36	17	10368869	10368869	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10368869	10368869	T	A	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	missense	c.4901	p.Q1634L	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH2	4620	genome.wustl.edu	36	17	10381793	10381793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10381793	10381793	G	T	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	missense	c.1501	p.Q501K	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH3	4621	genome.wustl.edu	36	17	10486588	10486588	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10486588	10486588	C	T	SNP	MYH3	NM_002470	human	genbank	54_36p	-1	reviewed	missense	c.1759	p.V587M	1	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head"	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH3	4621	genome.wustl.edu	36	17	10486645	10486645	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	10486645	10486645	T	C	SNP	MYH3	NM_002470	human	genbank	54_36p	-1	reviewed	missense	c.1702	p.K568E	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11613331	11613331	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	17	11613331	11613331	C	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	1	reviewed	silent	c.7512	p.N2504	0.96	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2"	-	no_errors
DNAH9	1770	genome.wustl.edu	36	17	11749704	11749704	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	11749704	11749704	G	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	1	reviewed	missense	c.11602	p.D3868Y	1	HMMPfam_Dynein_heavy	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PITPNA	5306	genome.wustl.edu	36	17	1388963	1388963	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	1388963	1388963	C	T	SNP	PITPNA	NM_006224	human	genbank	54_36p	-1	validated	missense	c.406	p.V136M	1	"HMMPfam_IP_trans,superfamily_SSF55961"	"HMMPfam_IP_trans,superfamily_SSF55961"	-	no_errors
PRPF8	10594	genome.wustl.edu	36	17	1525263	1525263	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	1525263	1525263	C	G	SNP	PRPF8	NM_006445	human	genbank	54_36p	-1	reviewed	missense	c.2993	p.R998P	1	HMMPfam_RRM_4	"HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_RRM_4,HMMPfam_U5_2-snRNA_bdg,HMMPfam_U6-snRNA_bdg,HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PROCT"	-	no_errors
CDRT1	374286	genome.wustl.edu	36	17	15442644	15442644	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	15442644	15442644	G	C	SNP	CDRT1	NM_006382	human	genbank	54_36p	-1	provisional	missense	c.1482	p.H494Q	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_F-box domain,HMMPfam_F-box,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ADORA2B	136	genome.wustl.edu	36	17	15819310	15819310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	15819310	15819310	C	T	SNP	ADORA2B	NM_000676	human	genbank	54_36p	1	reviewed	missense	c.928	p.L310F	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SERPINF1	5176	genome.wustl.edu	36	17	1621076	1621076	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	1621076	1621076	C	T	SNP	SERPINF1	NM_002615	human	genbank	54_36p	1	validated	missense	c.287	p.A96V	1	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
LOC644422	644422	genome.wustl.edu	36	17	16461353	16461353	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	16461353	16461353	G	C	SNP	LOC644422	XR_017541	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ZNF624	57547	genome.wustl.edu	36	17	16466375	16466375	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	16466375	16466375	G	A	SNP	ZNF624	NM_020787	human	genbank	54_36p	-1	validated	silent	c.2550	p.S850	0.01	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CCDC144A	9720	genome.wustl.edu	36	17	16551563	16551563	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	16551563	16551563	C	T	SNP	CCDC144A	NM_014695	human	genbank	54_36p	1	provisional	silent	c.720	p.C240	0	NULL	NULL	-	no_errors
LOC400578	400578	genome.wustl.edu	36	17	16675795	16675795	+	RNA	SNP	T	T	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	16675795	16675795	T	G	SNP	LOC400578	XR_017543	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.01	-	-	-	no_errors
LOC400578	400578	genome.wustl.edu	36	17	16676298	16676298	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	16676298	16676298	T	A	SNP	LOC400578	XR_017543	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.07	-	-	-	no_errors
TBC1D28	254272	genome.wustl.edu	36	17	18482408	18482408	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	18482408	18482408	C	T	SNP	TBC1D28	NM_001039397	human	genbank	54_36p	-1	validated	silent	c.330	p.A110	0.1	superfamily_RabGAP_TBC	superfamily_RabGAP_TBC	-	no_errors
FBXW10	10517	genome.wustl.edu	36	17	18595091	18595091	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	18595091	18595091	G	C	SNP	FBXW10	NM_031456	human	genbank	54_36p	1	validated	missense	c.1122	p.K374N	1	"superfamily_WD40 repeat-like,superfamily_F-box domain"	"superfamily_WD40 repeat-like,superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
SNORD3A	780851	genome.wustl.edu	36	17	19032095	19032095	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	19032095	19032095	C	T	SNP	SNORD3A	ENST00000365494	human	ensembl	54_36p	1	known	rna	NULL	NULL	0.99	-	-	-	no_errors
RNF112	7732	genome.wustl.edu	36	17	19258027	19258027	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	19258027	19258027	G	A	SNP	RNF112	ENST00000299604	human	ensembl	54_36p	1	known	missense	c.853	p.D285N	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP"	-	no_errors
ALDH3A2	224	genome.wustl.edu	36	17	19508856	19508856	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	19508856	19508856	A	G	SNP	ALDH3A2	NM_001031806	human	genbank	54_36p	1	reviewed	missense	c.1111	p.I371V	1	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh"	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
SPECC1	92521	genome.wustl.edu	36	17	20048346	20048346	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	20048346	20048346	C	T	SNP	CYTSB	NM_001033553	human	genbank	54_36p	1	validated	missense	c.392	p.S131L	0.02	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
SPECC1	92521	genome.wustl.edu	36	17	20048888	20048888	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	20048888	20048888	T	C	SNP	CYTSB	NM_001033553	human	genbank	54_36p	1	validated	missense	c.934	p.S312P	0.54	NULL	"HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain"	-	no_errors
LOC645313	645313	genome.wustl.edu	36	17	20628829	20628829	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	20628829	20628829	A	G	SNP	LOC645313	XR_017585	human	genbank	54_36p	1	model	rna	NULL	NULL	0.92	-	-	-	pseudogene
KCNJ12	3768	genome.wustl.edu	36	17	21260314	21260314	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	21260314	21260314	G	A	SNP	KCNJ12	NM_021012	human	genbank	54_36p	1	validated	missense	c.1067	p.R356H	1	"HMMPfam_IRK,superfamily_Ig_E-set"	"HMMPfam_IRK_N,superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set"	-	no_errors
TSR1	55720	genome.wustl.edu	36	17	2183158	2183158	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	2183158	2183158	C	G	SNP	TSR1	NM_018128	human	genbank	54_36p	-1	validated	missense	c.1152	p.K384N	0.97	NULL	"HMMPfam_AARP2CN,HMMSmart_AARP2CN,HMMPfam_DUF663"	-	no_errors
NLK	51701	genome.wustl.edu	36	17	23512371	23512371	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	23512371	23512371	C	A	SNP	NLK	NM_016231	human	genbank	54_36p	1	validated	missense	c.703	p.P235T	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
FLJ40504	284085	genome.wustl.edu	36	17	23628148	23628148	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	23628148	23628148	C	A	SNP	FLJ40504	NM_173624	human	genbank	54_36p	-1	predicted	nonsense	c.454	p.E152*	1	HMMPfam_Filament	HMMPfam_Filament	-	no_errors
KIAA0100	9703	genome.wustl.edu	36	17	23990758	23990758	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	23990758	23990758	G	A	SNP	KIAA0100	NM_014680	human	genbank	54_36p	-1	validated	missense	c.1045	p.R349C	1	NULL	"HMMPfam_Mqo,HMMPfam_Fmp27_GFWDK,HMMPfam_Apt1"	-	no_errors
SUPT6H	6830	genome.wustl.edu	36	17	24024598	24024598	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	24024598	24024598	G	A	SNP	SUPT6H	NM_003170	human	genbank	54_36p	1	validated	missense	c.52	p.D18N	0.99	NULL	"HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316,HMMPfam_S1,superfamily_SH2 domain,HMMSmart_SM00252"	-	no_errors
RPL23A	6147	genome.wustl.edu	36	17	24074728	24074728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	24074728	24074728	G	C	SNP	RPL23A	NM_000984	human	genbank	54_36p	1	reviewed	missense	c.399	p.E133D	1	"superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L23"	"HMMPfam_Ribosomal_L23eN,superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L23,PatternScan_RIBOSOMAL_L23"	-	no_errors
MYO18A	399687	genome.wustl.edu	36	17	24442013	24442013	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	24442013	24442013	C	G	SNP	MYO18A	NM_078471	human	genbank	54_36p	-1	validated	missense	c.5245	p.E1749Q	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin"	-	no_errors
MYO18A	399687	genome.wustl.edu	36	17	24472330	24472330	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	24472330	24472330	C	T	SNP	MYO18A	NM_078471	human	genbank	54_36p	-1	validated	missense	c.1397	p.R466Q	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NUFIP2	57532	genome.wustl.edu	36	17	24637892	24637892	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	24637892	24637892	T	C	SNP	NUFIP2	NM_020772	human	genbank	54_36p	-1	validated	missense	c.1246	p.N416D	1	NULL	NULL	-	no_errors
CCDC55	84081	genome.wustl.edu	36	17	25536462	25536462	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	25536462	25536462	G	A	SNP	CCDC55	NM_032141	human	genbank	54_36p	1	validated	missense	c.1321	p.E441K	0.02	NULL	HMMPfam_DUF2040	-	no_errors
ATAD5	79915	genome.wustl.edu	36	17	26186388	26186388	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26186388	26186388	C	T	SNP	ATAD5	NM_024857	human	genbank	54_36p	1	provisional	missense	c.1163	p.S388F	0.98	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	-	no_errors
ATAD5	79915	genome.wustl.edu	36	17	26228597	26228597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26228597	26228597	G	C	SNP	ATAD5	NM_024857	human	genbank	54_36p	1	provisional	missense	c.3822	p.Q1274H	0.16	"HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ATAD5	79915	genome.wustl.edu	36	17	26243895	26243895	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26243895	26243895	T	G	SNP	ATAD5	NM_024857	human	genbank	54_36p	1	provisional	missense	c.4403	p.I1468S	0.99	NULL	"HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
C17orf42	79736	genome.wustl.edu	36	17	26251689	26251689	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26251689	26251689	T	G	SNP	C17orf42	NM_024683	human	genbank	54_36p	-1	validated	silent	c.513	p.I171	0.94	superfamily_Ribonuclease H-like	superfamily_Ribonuclease H-like	-	no_errors
LOC646021	646021	genome.wustl.edu	36	17	26373157	26373157	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26373157	26373157	G	T	SNP	LOC646021	XM_933339	human	genbank	54_36p	1	model	missense	c.810	p.Q270H	1	NULL	NULL	-	no_errors
LRRC37B	114659	genome.wustl.edu	36	17	27400349	27400349	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	27400349	27400349	A	G	SNP	LRRC37B	NM_052888	human	genbank	54_36p	1	validated	silent	c.2499	p.T833	0.01	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
RHOT1	55288	genome.wustl.edu	36	17	27527332	27527332	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	27527332	27527332	G	C	SNP	RHOT1	NM_001033568	human	genbank	54_36p	1	validated	missense	c.316	p.D106H	1	"superfamily_SSF52540,HMMPfam_Miro"	"superfamily_SSF52540,HMMPfam_Miro,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_EF_assoc_2,HMMPfam_EF_assoc_1"	-	no_errors
CDK5R1	8851	genome.wustl.edu	36	17	27839273	27839273	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	27839273	27839273	C	T	SNP	CDK5R1	NM_003885	human	genbank	54_36p	1	reviewed	silent	c.522	p.P174	1	"HMMPfam_CDK5_activator,superfamily_Cyclin-like"	"HMMPfam_CDK5_activator,superfamily_Cyclin-like"	-	no_errors
MYO1D	4642	genome.wustl.edu	36	17	28106699	28106699	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	28106699	28106699	C	A	SNP	MYO1D	NM_015194	human	genbank	54_36p	-1	provisional	missense	c.1391	p.G464V	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_TH1"	-	no_errors
SPACA3	124912	genome.wustl.edu	36	17	28346653	28346653	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	28346653	28346653	G	A	SNP	SPACA3	NM_173847	human	genbank	54_36p	1	provisional	missense	c.148	p.A50T	0.01	NULL	"HMMPfam_Lys,superfamily_Lysozyme-like,HMMSmart_SM00263,PatternScan_LACTALBUMIN_LYSOZYME_1"	-	no_errors
ACCN1	40	genome.wustl.edu	36	17	28372415	28372425	+	Frame_Shift_Del	DEL	AATATATCCAG	AATATATCCAG	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	AATATATCCAG	AATATATCCAG	AATATATCCAG	-	AATATATCCAG	AATATATCCAG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	28372415	28372425	AATATATCCAG	-	DEL	ACCN1	NM_183377	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1376_1366	p.L456fs	1.000:1.000:1.000:1.000:0.998:0.998:1.000:1.000:1.000:1.000:0.998	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	"(deletion:cds_exon[28372350,28372441])"	no_errors
RAP1GAP2	23108	genome.wustl.edu	36	17	2876141	2876141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	2876141	2876141	C	T	SNP	GARNL4	NM_015085	human	genbank	54_36p	1	validated	missense	c.1841	p.P614L	1	NULL	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	-	no_errors
FNDC8	54752	genome.wustl.edu	36	17	30481491	30481491	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	30481491	30481491	C	T	SNP	FNDC8	NM_017559	human	genbank	54_36p	1	validated	silent	c.900	p.P300	0.71	NULL	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
OR1A1	8383	genome.wustl.edu	36	17	3065967	3065967	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	3065967	3065967	G	A	SNP	OR1A1	NM_014565	human	genbank	54_36p	1	provisional	missense	c.303	p.M101I	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
SLFN12L	342615	genome.wustl.edu	36	17	30830892	30830892	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	30830892	30830892	C	T	SNP	SLFN12L	ENST00000361112	human	ensembl	54_36p	-1	known	silent	c.396	p.T132	0	NULL	HMMPfam_AAA_4	-	no_errors
OR3A4	390756	genome.wustl.edu	36	17	3160859	3160859	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	3160859	3160859	C	G	SNP	OR3A4	ENST00000323164	human	ensembl	54_36p	1	known	missense	c.505	p.L169V	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MYO19	80179	genome.wustl.edu	36	17	31957639	31957639	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	31957639	31957639	C	A	SNP	MYO19	NM_025109	human	genbank	54_36p	-1	validated	silent	c.156	p.L52	1	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head"	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ"	-	no_errors
LHX1	3975	genome.wustl.edu	36	17	32371784	32371784	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	32371784	32371784	C	T	SNP	LHX1	NM_005568	human	genbank	54_36p	1	reviewed	silent	c.255	p.H85	1	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ACACA	31	genome.wustl.edu	36	17	32528962	32528962	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	32528962	32528962	T	C	SNP	ACACA	NM_198834	human	genbank	54_36p	-1	reviewed	silent	c.6636	p.L2212	0.92	"superfamily_SSF52096,HMMPfam_Carboxyl_trans"	###############################################################################################################################################################################################################################################################	-	no_errors
SYNRG	11276	genome.wustl.edu	36	17	32976327	32976327	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	32976327	32976327	G	A	SNP	AP1GBP1	NM_007247	human	genbank	54_36p	-1	reviewed	missense	c.3062	p.S1021L	0.08	NULL	"HMMSmart_SM00027,superfamily_EF-hand"	-	no_errors
DDX52	11056	genome.wustl.edu	36	17	33064181	33064181	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	33064181	33064181	C	A	SNP	DDX52	NM_007010	human	genbank	54_36p	-1	validated	missense	c.739	p.A247S	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
TRPV3	162514	genome.wustl.edu	36	17	3371026	3371026	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	3371026	3371026	A	C	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	missense	c.1801	p.F601V	1	HMMPfam_Ion_trans	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
GPR179	440435	genome.wustl.edu	36	17	33737958	33737958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	33737958	33737958	G	A	SNP	GPR179	NM_001004334	human	genbank	54_36p	-1	validated	missense	c.5020	p.L1674F	0	NULL	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3"	-	no_errors
TRPV3	162514	genome.wustl.edu	36	17	3374306	3374306	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	3374306	3374306	G	A	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	missense	c.1679	p.A560V	1	HMMPfam_Ion_trans	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans"	-	no_errors
PIP4K2B	8396	genome.wustl.edu	36	17	34190269	34190269	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	34190269	34190269	C	A	SNP	PIP4K2B	NM_003559	human	genbank	54_36p	-1	reviewed	missense	c.469	p.V157L	1	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	"superfamily_SAICAR synthase-like,HMMSmart_SM00330,HMMPfam_PIP5K"	-	no_errors
PLXDC1	57125	genome.wustl.edu	36	17	34549525	34549525	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	34549525	34549525	C	A	SNP	PLXDC1	NM_020405	human	genbank	54_36p	-1	validated	missense	c.163	p.V55L	0.16	NULL	HMMPfam_PSI	-	no_errors
CACNB1	782	genome.wustl.edu	36	17	34593507	34593507	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	34593507	34593507	C	G	SNP	CACNB1	NM_000723	human	genbank	54_36p	-1	reviewed	missense	c.1035	p.K345N	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ca_channel_B,HMMSmart_SM00072"	"superfamily_SH3-domain,HMMPfam_SH3_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ca_channel_B,HMMSmart_SM00072"	-	no_errors
PNMT	5409	genome.wustl.edu	36	17	35079886	35079886	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	35079886	35079886	A	T	SNP	PNMT	NM_002686	human	genbank	54_36p	1	reviewed	silent	c.567	p.P189	0.99	"HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335"	"HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335,PatternScan_NNMT_PNMT_TEMT"	-	no_errors
GRB7	2886	genome.wustl.edu	36	17	35156647	35156647	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	35156647	35156647	C	T	SNP	GRB7	NM_001030002	human	genbank	54_36p	1	reviewed	missense	c.1570	p.R524C	1	superfamily_SH2 domain	"HMMPfam_RA,HMMSmart_SM00314,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_BPS,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
PSMD3	5709	genome.wustl.edu	36	17	35405006	35405006	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	35405006	35405006	G	T	SNP	PSMD3	NM_002809	human	genbank	54_36p	1	reviewed	missense	c.1148	p.G383V	1	"HMMSmart_SM00753,HMMPfam_PCI"	"superfamily_TPR-like,HMMSmart_SM00753,HMMPfam_PCI,superfamily_Winged helix DNA-binding domain,HMMSmart_SM00088,HMMPfam_Rpn3_C"	-	no_errors
CSF3	1440	genome.wustl.edu	36	17	35425469	35425469	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	35425469	35425469	G	A	SNP	CSF3	NM_000759	human	genbank	54_36p	1	reviewed	splice_site	c.41-1	e2-1	0.93	-	-	-	no_errors
CDC6	990	genome.wustl.edu	36	17	35700993	35700993	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	35700993	35700993	A	C	SNP	CDC6	NM_001254	human	genbank	54_36p	1	reviewed	silent	c.336	p.L112	0.01	NULL	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF46785,HMMPfam_Cdc6_C"	-	no_errors
CDC6	990	genome.wustl.edu	36	17	35710691	35710691	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	35710691	35710691	G	T	SNP	CDC6	NM_001254	human	genbank	54_36p	1	reviewed	missense	c.1335	p.R445S	1	NULL	"HMMSmart_AAA,HMMPfam_AAA,HMMPfam_Cdc6_C,superfamily_SSF46785,superfamily_SSF52540"	-	no_errors
RARA	5914	genome.wustl.edu	36	17	35765168	35765168	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	35765168	35765168	G	C	SNP	RARA	NM_000964	human	genbank	54_36p	1	validated	missense	c.1140	p.K380N	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
KRT25	147183	genome.wustl.edu	36	17	36163715	36163715	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	36163715	36163715	G	T	SNP	KRT25	NM_181534	human	genbank	54_36p	-1	provisional	missense	c.592	p.L198M	1	HMMPfam_Filament	"PatternScan_IF,HMMPfam_Filament"	-	no_errors
KRT23	25984	genome.wustl.edu	36	17	36335148	36335148	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	36335148	36335148	C	A	SNP	KRT23	NM_015515	human	genbank	54_36p	-1	reviewed	nonsense	c.1126	p.E376*	1	"HMMPfam_Filament,PatternScan_IF"	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
LOC728341	728341	genome.wustl.edu	36	17	36685561	36685561	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	36685561	36685561	G	A	SNP	LOC728341	XM_001127251	human	genbank	54_36p	1	model	missense	c.86	p.S29N	0	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRT14	3861	genome.wustl.edu	36	17	36993338	36993338	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	36993338	36993338	C	T	SNP	KRT14	NM_000526	human	genbank	54_36p	-1	reviewed	silent	c.1044	p.Q348	1	HMMPfam_Filament	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
HAP1	9001	genome.wustl.edu	36	17	37134774	37134774	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	37134774	37134774	G	C	SNP	HAP1	NM_177977	human	genbank	54_36p	-1	reviewed	missense	c.1565	p.A522G	0	NULL	HMMPfam_HAP1_N	-	no_errors
HAP1	9001	genome.wustl.edu	36	17	37142537	37142537	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	37142537	37142537	G	C	SNP	HAP1	NM_177977	human	genbank	54_36p	-1	reviewed	missense	c.509	p.T170S	0.98	HMMPfam_HAP1_N	HMMPfam_HAP1_N	-	no_errors
JUP	3728	genome.wustl.edu	36	17	37165966	37165968	+	In_Frame_Del	DEL	CTC	CTC	-	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	37165966	37165968	CTC	-	DEL	JUP	NM_002230	human	genbank	54_36p	-1	reviewed	in_frame_del	c.2073_2071	p.E691in_frame_del	0.953:0.993:0.998	NULL	"superfamily_ARM-type_fold,HMMSmart_ARM,HMMPfam_HEAT,HMMPfam_Arm"	"(deletion:cds_exon[37165953,37165992])"	no_errors
KLHL10	317719	genome.wustl.edu	36	17	37255021	37255021	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	37255021	37255021	G	C	SNP	KLHL10	NM_152467	human	genbank	54_36p	1	validated	missense	c.802	p.D268H	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMSmart_Kelch,HMMPfam_Kelch_1,superfamily_Gal_oxid_central"	-	no_errors
ACLY	47	genome.wustl.edu	36	17	37323524	37323524	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	37323524	37323524	C	G	SNP	ACLY	NM_001096	human	genbank	54_36p	-1	reviewed	missense	c.129	p.L43F	0.99	superfamily_SSF56059	"superfamily_SSF56059,superfamily_CoA_ligase,PatternScan_SUCCINYL_COA_LIG_3,superfamily_NAD(P)-bd,HMMPfam_CoA_binding,superfamily_Citrate_synthase_core,HMMPfam_Ligase_CoA,PatternScan_SUCCINYL_COA_LIG_1,PatternScan_SUCCINYL_COA_LIG_2"	-	no_errors
TTC25	83538	genome.wustl.edu	36	17	37348883	37348883	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	37348883	37348883	G	A	SNP	TTC25	ENST00000377543	human	ensembl	54_36p	1	known	silent	c.990	p.Q330	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
NKIRAS2	28511	genome.wustl.edu	36	17	37428150	37428150	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	37428150	37428150	A	T	SNP	NKIRAS2	NM_001001349	human	genbank	54_36p	1	validated	missense	c.302	p.K101M	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro"	-	no_errors
P2RX1	5023	genome.wustl.edu	36	17	3747882	3747882	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	3747882	3747882	A	C	SNP	P2RX1	NM_002558	human	genbank	54_36p	-1	reviewed	missense	c.1175	p.L392R	1	NULL	"HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR"	-	no_errors
TUBG1	7283	genome.wustl.edu	36	17	38017659	38017659	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38017659	38017659	G	T	SNP	TUBG1	NM_001070	human	genbank	54_36p	1	reviewed	missense	c.371	p.R124L	1	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin"	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
CNTNAP1	8506	genome.wustl.edu	36	17	38096296	38096296	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38096296	38096296	G	A	SNP	CNTNAP1	NM_003632	human	genbank	54_36p	1	reviewed	nonsense	c.1869	p.W623*	1	"superfamily_ConA_like_lec_gl,superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG"	###############################################################################################################################################################################################################################################################	-	no_errors
EZH1	2145	genome.wustl.edu	36	17	38108443	38108443	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38108443	38108443	C	T	SNP	EZH1	NM_001991	human	genbank	54_36p	-1	validated	missense	c.2161	p.E721K	1	"superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	"HMMSmart_SM00717,PatternScan_AP_NUCLEASE_F2_1,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
BECN1	8678	genome.wustl.edu	36	17	38216443	38216443	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38216443	38216443	T	C	SNP	BECN1	NM_003766	human	genbank	54_36p	-1	validated	missense	c.1214	p.D405G	1	HMMPfam_APG6	HMMPfam_APG6	-	no_errors
AOC2	314	genome.wustl.edu	36	17	38251101	38251101	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38251101	38251101	C	T	SNP	AOC2	NM_009590	human	genbank	54_36p	1	reviewed	missense	c.932	p.S311L	0.53	"superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid"	"superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2"	-	no_errors
AOC2	314	genome.wustl.edu	36	17	38255163	38255163	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38255163	38255163	C	T	SNP	AOC2	NM_009590	human	genbank	54_36p	1	reviewed	nonsense	c.1894	p.Q632*	0.85	"HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain"	"PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region"	-	no_errors
AOC3	8639	genome.wustl.edu	36	17	38258187	38258187	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38258187	38258187	A	T	SNP	AOC3	NM_003734	human	genbank	54_36p	1	reviewed	missense	c.1301	p.Q434L	1	"superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxid"	"superfamily_Cu_amine_oxidase_N-reg,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_CuNH_oxidase,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2"	-	no_errors
G6PC	2538	genome.wustl.edu	36	17	38316805	38316805	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	38316805	38316805	G	A	SNP	G6PC	NM_000151	human	genbank	54_36p	1	reviewed	missense	c.910	p.V304I	0.12	NULL	"superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2"	-	no_errors
ZZEF1	23140	genome.wustl.edu	36	17	3867594	3867594	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	3867594	3867594	G	C	SNP	ZZEF1	NM_015113	human	genbank	54_36p	-1	validated	silent	c.7821	p.L2607	1	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,superfamily_Galactose-binding domain-like,HMMPfam_APC10,superfamily_Spermadhesin CUB domain,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
SLC4A1	6521	genome.wustl.edu	36	17	39690943	39690944	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	39690943	39690944	CC	AG	DNP	SLC4A1	NM_000342	human	genbank	54_36p	-1	reviewed	missense	c.1219_1218	p.A407S	1.000:1.000	HMMPfam_HCO3_cotransp	"superfamily_PTrfase/Anion_transptr,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2"	-	no_errors
ITGA2B	3674	genome.wustl.edu	36	17	39813519	39813519	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	39813519	39813519	C	T	SNP	ITGA2B	NM_000419	human	genbank	54_36p	-1	reviewed	missense	c.1414	p.G472R	0.88	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
FZD2	2535	genome.wustl.edu	36	17	39992127	39992127	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	39992127	39992127	G	A	SNP	FZD2	NM_001466	human	genbank	54_36p	1	reviewed	silent	c.1545	p.S515	1	HMMPfam_Frizzled	"HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI,HMMPfam_Frizzled"	-	no_errors
GFAP	2670	genome.wustl.edu	36	17	40346652	40346652	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	40346652	40346652	C	T	SNP	GFAP	NM_002055	human	genbank	54_36p	-1	reviewed	silent	c.588	p.E196	1	HMMPfam_Filament	"HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF"	-	no_errors
KIF18B	146909	genome.wustl.edu	36	17	40366915	40366915	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	40366915	40366915	T	C	SNP	KIF18B	NM_001080443	human	genbank	54_36p	-1	provisional	missense	c.964	p.T322A	1	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin"	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
WNT9B	7484	genome.wustl.edu	36	17	42307405	42307405	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	42307405	42307405	C	G	SNP	WNT9B	ENST00000376843	human	ensembl	54_36p	1	known	missense	c.256	p.L86V	0	"HMMSmart_WNT1,HMMPfam_wnt"	"HMMSmart_WNT1,HMMPfam_wnt,PatternScan_WNT1"	-	no_errors
LOC644397	644397	genome.wustl.edu	36	17	42450591	42450591	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	42450591	42450591	A	T	SNP	LOC644397	XR_042323	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC644397	644397	genome.wustl.edu	36	17	42451708	42451708	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	42451708	42451708	C	T	SNP	LOC644397	XR_042323	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
CDC27	996	genome.wustl.edu	36	17	42576246	42576246	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	42576246	42576246	A	G	SNP	CDC27	NM_001256	human	genbank	54_36p	-1	reviewed	splice_site	c.1170+2	e10+2	1	-	-	-	no_errors
LRRC46	90506	genome.wustl.edu	36	17	43267764	43267764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	43267764	43267764	G	A	SNP	LRRC46	NM_033413	human	genbank	54_36p	1	provisional	missense	c.272	p.R91H	1	"superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1"	"superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
SCRN2	90507	genome.wustl.edu	36	17	43270947	43270947	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	43270947	43270947	T	A	SNP	SCRN2	NM_138355	human	genbank	54_36p	-1	validated	missense	c.887	p.D296V	1	NULL	NULL	-	no_errors
PRR15L	79170	genome.wustl.edu	36	17	43385312	43385312	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	43385312	43385312	G	C	SNP	ATAD4	NM_024320	human	genbank	54_36p	-1	provisional	missense	c.288	p.H96Q	0	NULL	NULL	-	no_errors
HOXB1	3211	genome.wustl.edu	36	17	43963034	43963034	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	43963034	43963034	T	A	SNP	HOXB1	NM_002144	human	genbank	54_36p	-1	reviewed	missense	c.232	p.S78C	0.82	NULL	"PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
B4GALNT2	124872	genome.wustl.edu	36	17	44601986	44601986	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	44601986	44601986	C	A	SNP	B4GALNT2	NM_153446	human	genbank	54_36p	1	provisional	missense	c.1598	p.A533D	0	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	-	no_errors
PELP1	27043	genome.wustl.edu	36	17	4524656	4524656	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	4524656	4524656	G	T	SNP	PELP1	NM_014389	human	genbank	54_36p	-1	validated	missense	c.1480	p.P494T	1	NULL	"HMMPfam_NUC201,HMMPfam_NUC202"	-	no_errors
MYST2	11143	genome.wustl.edu	36	17	45248246	45248246	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	45248246	45248246	G	C	SNP	MYST2	NM_007067	human	genbank	54_36p	1	provisional	missense	c.935	p.R312T	1	NULL	"superfamily_CCHHC domain,HMMPfam_zf-C2HC,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
WFIKKN2	124857	genome.wustl.edu	36	17	46272134	46272134	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	46272134	46272134	G	C	SNP	WFIKKN2	NM_175575	human	genbank	54_36p	1	reviewed	missense	c.486	p.E162D	1	"superfamily_SSF100895,HMMPfam_Kazal_2,HMMSmart_KAZAL"	###############################################################################################################################################################################################################################################################	-	no_errors
PSMB6	5694	genome.wustl.edu	36	17	4647940	4647940	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	4647940	4647940	A	G	SNP	PSMB6	NM_002798	human	genbank	54_36p	1	reviewed	missense	c.308	p.E103G	1	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome"	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
MINK1	50488	genome.wustl.edu	36	17	4740635	4740636	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	4740635	4740636	-	G	INS	MINK1	ENST00000355280	human	ensembl	54_36p	1	known	frame_shift_ins	c.3445_3446	p.E1151fs	1.000:1.000	"HMMSmart_SM00036,HMMPfam_CNH"	"HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),PatternScan_ZINC_FINGER_C2H2_1,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
CAMTA2	23125	genome.wustl.edu	36	17	4824431	4824431	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	4824431	4824431	G	T	SNP	CAMTA2	NM_015099	human	genbank	54_36p	-1	reviewed	missense	c.910	p.P304T	0.99	NULL	"HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Ank,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ"	-	no_errors
CAMTA2	23125	genome.wustl.edu	36	17	4826908	4826908	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	4826908	4826908	A	T	SNP	CAMTA2	NM_015099	human	genbank	54_36p	-1	reviewed	silent	c.207	p.P69	1	HMMPfam_CG-1	"HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LOC645173	645173	genome.wustl.edu	36	17	49189892	49189892	+	RNA	SNP	C	T	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	49189892	49189892	C	T	SNP	LOC645173	XR_017590	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
USP6	9098	genome.wustl.edu	36	17	4976318	4976318	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	4976318	4976318	A	T	SNP	USP6	ENST00000396805	human	ensembl	54_36p	1	known	missense	c.242	p.D81V	0.9	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC"	-	no_errors
ZNF594	84622	genome.wustl.edu	36	17	5026482	5026482	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	5026482	5026482	G	A	SNP	ZNF594	NM_032530	human	genbank	54_36p	-1	validated	silent	c.1794	p.C598	0.05	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
TOM1L1	10040	genome.wustl.edu	36	17	50348154	50348154	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	50348154	50348154	G	A	SNP	TOM1L1	NM_005486	human	genbank	54_36p	1	validated	missense	c.652	p.V218M	1	"superfamily_SSF89009,HMMPfam_GAT"	"superfamily_ENTH_VHS,HMMPfam_VHS,HMMSmart_VHS,superfamily_SSF89009,HMMPfam_GAT"	-	no_errors
HLF	3131	genome.wustl.edu	36	17	50747721	50747721	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	50747721	50747721	C	G	SNP	HLF	NM_002126	human	genbank	54_36p	1	reviewed	missense	c.586	p.R196G	1	NULL	"HMMSmart_SM00338,HMMPfam_bZIP_2"	-	no_errors
ANKFN1	162282	genome.wustl.edu	36	17	51913086	51913086	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	51913086	51913086	C	A	SNP	ANKFN1	NM_153228	human	genbank	54_36p	1	validated	missense	c.2008	p.H670N	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
AKAP1	8165	genome.wustl.edu	36	17	52549231	52549231	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	52549231	52549231	T	A	SNP	AKAP1	NM_003488	human	genbank	54_36p	1	reviewed	missense	c.2444	p.V815D	1	"HMMPfam_TUDOR,HMMSmart_SM00333"	"HMMPfam_RII_binding_1,HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333"	-	no_errors
VEZF1	7716	genome.wustl.edu	36	17	53411654	53411654	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	53411654	53411654	G	A	SNP	VEZF1	NM_007146	human	genbank	54_36p	-1	validated	silent	c.996	p.T332	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
EPX	8288	genome.wustl.edu	36	17	53635665	53635665	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	53635665	53635665	C	T	SNP	EPX	NM_000502	human	genbank	54_36p	1	validated	nonsense	c.1933	p.R645*	0.76	"superfamily_Peroxidase_super,HMMPfam_An_peroxidase"	"PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1"	-	no_errors
MPO	4353	genome.wustl.edu	36	17	53706008	53706008	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	53706008	53706008	G	A	SNP	MPO	NM_000250	human	genbank	54_36p	-1	reviewed	silent	c.1387	p.L463	1	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1"	-	no_errors
PPM1E	22843	genome.wustl.edu	36	17	54397884	54397885	+	Missense_Mutation	DNP	GA	GA	AG	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	GA	GA	GA	AG	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	54397884	54397885	GA	AG	DNP	PPM1E	NM_014906	human	genbank	54_36p	1	reviewed	missense	c.631_632	p.E211R	1.000:1.000	superfamily_Protein serine/threonine phosphatase 2C catalytic domain	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C"	-	no_errors
TRIM37	4591	genome.wustl.edu	36	17	54483461	54483461	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	54483461	54483461	G	C	SNP	TRIM37	NM_001005207	human	genbank	54_36p	-1	reviewed	missense	c.1210	p.R404G	1	"superfamily_TRAF domain-like,HMMPfam_MATH"	"superfamily_RING/U-box,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
C17orf71	55181	genome.wustl.edu	36	17	54643302	54643302	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	54643302	54643302	C	T	SNP	C17orf71	NM_018149	human	genbank	54_36p	1	validated	missense	c.1108	p.P370S	0.99	HMMPfam_DUF2146	HMMPfam_DUF2146	-	no_errors
C17orf71	55181	genome.wustl.edu	36	17	54643790	54643790	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	54643790	54643790	T	C	SNP	C17orf71	NM_018149	human	genbank	54_36p	1	validated	silent	c.1596	p.L532	1	HMMPfam_DUF2146	HMMPfam_DUF2146	-	no_errors
CA4	762	genome.wustl.edu	36	17	55590489	55590490	+	Missense_Mutation	DNP	GG	GG	TC	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	GG	GG	GG	TC	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	55590489	55590490	GG	TC	DNP	CA4	NM_000717	human	genbank	54_36p	1	reviewed	missense	c.644_645	p.R215I	0.001:0.002	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
LOC729621	729621	genome.wustl.edu	36	17	56159371	56159371	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	56159371	56159371	C	T	SNP	LOC729621	XM_001133900	human	genbank	54_36p	-1	model	silent	c.255	p.Q85	1	"superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44"	"superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44,PatternScan_RIBOSOMAL_L44E"	-	pseudogene
BCAS3	54828	genome.wustl.edu	36	17	56321844	56321844	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	56321844	56321844	A	G	SNP	BCAS3	NM_001099432	human	genbank	54_36p	1	validated	missense	c.668	p.Y223C	1	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
BCAS3	54828	genome.wustl.edu	36	17	56516669	56516669	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	56516669	56516669	A	T	SNP	BCAS3	NM_001099432	human	genbank	54_36p	1	validated	missense	c.2432	p.D811V	1	NULL	superfamily_WD40 repeat-like	-	no_errors
INTS2	57508	genome.wustl.edu	36	17	57301941	57301941	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	57301941	57301941	C	A	SNP	INTS2	NM_020748	human	genbank	54_36p	-1	validated	missense	c.2993	p.C998F	1	NULL	NULL	-	no_errors
LOC284167	284167	genome.wustl.edu	36	17	57569069	57569069	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	57569069	57569069	C	A	SNP	LOC284167	XR_017049	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.77	-	-	-	pseudogene
MRC2	9902	genome.wustl.edu	36	17	58119433	58119433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	58119433	58119433	G	A	SNP	MRC2	NM_006039	human	genbank	54_36p	1	validated	missense	c.2998	p.A1000T	1	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	###############################################################################################################################################################################################################################################################	-	no_errors
CYB561	1534	genome.wustl.edu	36	17	58868567	58868567	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	58868567	58868567	A	C	SNP	CYB561	NM_001017916	human	genbank	54_36p	-1	validated	missense	c.74	p.L25R	0.99	HMMPfam_Cytochrom_B561	"HMMPfam_Cytochrom_B561,HMMSmart_SM00665"	-	no_errors
DCAF7	10238	genome.wustl.edu	36	17	59016391	59016391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	59016391	59016391	C	T	SNP	WDR68	NM_005828	human	genbank	54_36p	1	validated	missense	c.826	p.P276S	1	NULL	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DDX42	11325	genome.wustl.edu	36	17	59249245	59249245	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	59249245	59249245	C	T	SNP	DDX42	NM_007372	human	genbank	54_36p	1	reviewed	missense	c.2572	p.R858W	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
ERN1	2081	genome.wustl.edu	36	17	59529239	59529239	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	59529239	59529239	C	G	SNP	ERN1	NM_001433	human	genbank	54_36p	-1	reviewed	missense	c.149	p.G50A	1	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ"	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	-	no_errors
GEMIN4	50628	genome.wustl.edu	36	17	595930	595930	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	595930	595930	C	G	SNP	GEMIN4	NM_015721	human	genbank	54_36p	-1	reviewed	missense	c.2103	p.L701F	0.97	NULL	NULL	-	no_errors
PECAM1	5175	genome.wustl.edu	36	17	59779420	59779420	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	59779420	59779420	C	G	SNP	PECAM1	NM_000442	human	genbank	54_36p	-1	provisional	splice_site	c.2040-1	e19-1	1	-	-	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PECAM1	5175	genome.wustl.edu	36	17	59791381	59791381	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	59791381	59791381	C	T	SNP	PECAM1	ENST00000375748	human	ensembl	54_36p	-1	known	missense	c.130	p.V44I	0	NULL	"HMMSmart_IG,superfamily_SSF48726"	-	no_stop_codon
DDX5	1655	genome.wustl.edu	36	17	59926750	59926750	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	59926750	59926750	C	G	SNP	DDX5	NM_004396	human	genbank	54_36p	-1	validated	missense	c.1598	p.G533A	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_P68HR"	-	no_errors
CCDC45	90799	genome.wustl.edu	36	17	59953772	59953772	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	59953772	59953772	G	C	SNP	CCDC45	NM_138363	human	genbank	54_36p	1	provisional	missense	c.1234	p.D412H	0	NULL	NULL	-	no_errors
PRKCA	5578	genome.wustl.edu	36	17	62072044	62072044	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	62072044	62072044	G	A	SNP	PRKCA	NM_002737	human	genbank	54_36p	1	reviewed	missense	c.482	p.R161Q	0.99	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	###############################################################################################################################################################################################################################################################	-	no_errors
PITPNM3	83394	genome.wustl.edu	36	17	6312289	6312289	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	6312289	6312289	G	A	SNP	PITPNM3	NM_031220	human	genbank	54_36p	-1	validated	missense	c.1870	p.R624W	1	NULL	"HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
RNMTL1	55178	genome.wustl.edu	36	17	632586	632586	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	632586	632586	A	G	SNP	RNMTL1	NM_018146	human	genbank	54_36p	1	provisional	missense	c.218	p.K73R	0	NULL	"superfamily_SSF55315,HMMPfam_SpoU_sub_bind,superfamily_SSF75217,HMMPfam_SpoU_methylase"	-	no_errors
BPTF	2186	genome.wustl.edu	36	17	63351149	63351150	+	Missense_Mutation	DNP	AG	AG	CC	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	AG	AG	AG	CC	AG	AG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	63351149	63351150	AG	CC	DNP	BPTF	NM_182641	human	genbank	54_36p	1	reviewed	missense	c.5733_5734	p.V1912L	0.863:0.870	NULL	"HMMPfam_FYDLN_acid,HMMPfam_DDT,HMMSmart_DDT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_EGF_2,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
ABCA6	23460	genome.wustl.edu	36	17	64588876	64588876	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	64588876	64588876	G	T	SNP	ABCA6	NM_080284	human	genbank	54_36p	-1	reviewed	missense	c.4622	p.S1541Y	0.75	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	-	no_errors
KCNJ16	3773	genome.wustl.edu	36	17	65639961	65639961	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	65639961	65639961	C	T	SNP	KCNJ16	NM_018658	human	genbank	54_36p	1	reviewed	silent	c.138	p.Y46	1	"superfamily_SSF81324,HMMPfam_IRK"	"superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set"	-	no_errors
NXN	64359	genome.wustl.edu	36	17	672422	672422	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	672422	672422	C	T	SNP	NXN	NM_022463	human	genbank	54_36p	-1	validated	missense	c.638	p.R213Q	1	"superfamily_Thioredoxin-like,HMMPfam_AhpC-TSA"	"superfamily_Thioredoxin-like,HMMPfam_AhpC-TSA"	-	no_errors
SLC39A11	201266	genome.wustl.edu	36	17	68539330	68539330	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	68539330	68539330	G	A	SNP	SLC39A11	NM_139177	human	genbank	54_36p	-1	provisional	missense	c.266	p.A89V	1	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
COG1	9382	genome.wustl.edu	36	17	68708381	68708381	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	68708381	68708381	C	G	SNP	COG1	NM_018714	human	genbank	54_36p	1	reviewed	missense	c.1152	p.D384E	0.98	NULL	HMMPfam_Vps51	-	no_errors
SLC16A11	162515	genome.wustl.edu	36	17	6885879	6885879	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	6885879	6885879	C	A	SNP	SLC16A11	NM_153357	human	genbank	54_36p	-1	provisional	missense	c.1259	p.S420I	1	superfamily_MFS_gen_substrate_transporter	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SDK2	54549	genome.wustl.edu	36	17	68876216	68876216	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	68876216	68876216	C	A	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	missense	c.4129	p.V1377F	1	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
SDK2	54549	genome.wustl.edu	36	17	68922422	68922422	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	68922422	68922422	C	T	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	missense	c.1477	p.A493T	0.99	"HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
ASGR2	433	genome.wustl.edu	36	17	6946148	6946148	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	6946148	6946148	T	C	SNP	ASGR2	NM_001181	human	genbank	54_36p	-1	reviewed	missense	c.755	p.Y252C	0.03	"HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C"	"HMMPfam_Lectin_N,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
TTYH2	94015	genome.wustl.edu	36	17	69760048	69760048	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	69760048	69760048	C	T	SNP	TTYH2	NM_032646	human	genbank	54_36p	1	reviewed	silent	c.1197	p.A399	0.32	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors
DNAI2	64446	genome.wustl.edu	36	17	69797457	69797457	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	69797457	69797457	C	T	SNP	DNAI2	NM_023036	human	genbank	54_36p	1	validated	silent	c.597	p.Y199	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
GPR142	350383	genome.wustl.edu	36	17	69880170	69880170	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	69880170	69880170	G	A	SNP	GPR142	NM_181790	human	genbank	54_36p	1	provisional	missense	c.1225	p.A409T	0.81	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPRC5C	55890	genome.wustl.edu	36	17	69947571	69947571	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	69947571	69947571	G	A	SNP	GPRC5C	NM_022036	human	genbank	54_36p	1	reviewed	missense	c.196	p.A66T	0	NULL	"HMMPfam_7tm_3,PatternScan_IG_MHC"	-	no_errors
GPRC5C	55890	genome.wustl.edu	36	17	69948051	69948051	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	69948051	69948051	C	T	SNP	GPRC5C	NM_022036	human	genbank	54_36p	1	reviewed	missense	c.676	p.R226W	0.94	HMMPfam_7tm_3	"PatternScan_IG_MHC,HMMPfam_7tm_3"	-	no_errors
CD300LB	124599	genome.wustl.edu	36	17	70039181	70039181	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	70039181	70039181	G	C	SNP	CD300LB	NM_174892	human	genbank	54_36p	-1	validated	missense	c.15	p.C5W	0	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
RAB37	326624	genome.wustl.edu	36	17	70253088	70253088	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	70253088	70253088	G	T	SNP	RAB37	NM_001006638	human	genbank	54_36p	1	validated	missense	c.615	p.Q205H	1	superfamily_SSF52540	"superfamily_SSF52540,HMMPfam_Ras,HMMSmart_RAB"	-	no_errors
OTOP2	92736	genome.wustl.edu	36	17	70438415	70438415	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	70438415	70438415	A	G	SNP	OTOP2	NM_178160	human	genbank	54_36p	1	provisional	missense	c.1090	p.T364A	1	NULL	HMMPfam_DUF270	-	no_errors
OTOP2	92736	genome.wustl.edu	36	17	70441188	70441188	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	70441188	70441188	C	T	SNP	OTOP2	NM_178160	human	genbank	54_36p	1	provisional	missense	c.1642	p.R548C	1	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors
OTOP3	347741	genome.wustl.edu	36	17	70455145	70455145	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	70455145	70455145	C	T	SNP	OTOP3	NM_178233	human	genbank	54_36p	1	provisional	missense	c.1600	p.L534F	1	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors
ACADVL	37	genome.wustl.edu	36	17	7066241	7066241	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7066241	7066241	C	T	SNP	ACADVL	NM_000018	human	genbank	54_36p	1	reviewed	silent	c.774	p.I258	1	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M"	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2"	-	no_errors
KIAA0195	9772	genome.wustl.edu	36	17	70998423	70998423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	70998423	70998423	G	A	SNP	KIAA0195	NM_014738	human	genbank	54_36p	1	validated	missense	c.1117	p.V373I	1	NULL	superfamily_Calcium ATPase transmembrane domain M	-	no_errors
CLDN7	1366	genome.wustl.edu	36	17	7104913	7104913	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7104913	7104913	C	A	SNP	CLDN7	NM_001307	human	genbank	54_36p	-1	validated	silent	c.339	p.V113	0.99	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
LLGL2	3993	genome.wustl.edu	36	17	71066945	71066945	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	71066945	71066945	C	G	SNP	LLGL2	NM_001031803	human	genbank	54_36p	1	reviewed	missense	c.389	p.T130R	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LLGL2	3993	genome.wustl.edu	36	17	71072149	71072163	+	In_Frame_Del	DEL	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	71072149	71072163	CTTCACTGTCCTCAC	-	DEL	LLGL2	NM_001031803	human	genbank	54_36p	1	reviewed	in_frame_del	c.1002_1016	p.FTVLT335in_frame_del	1.000:1.000:1.000:0.990:0.990:0.988:0.954:1.000:1.000:1.000:1.000:0.992:0.000:0.000:0.000	"superfamily_WD40 repeat-like,HMMPfam_LLGL"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	"(deletion:cds_exon[71072029,71072183])"	no_errors
UNK	85451	genome.wustl.edu	36	17	71327785	71327785	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	71327785	71327785	G	C	SNP	UNK	NM_001080419	human	genbank	54_36p	1	provisional	splice_site	c.2065+1	e14+1	1	-	-	-	no_errors
SRP68	6730	genome.wustl.edu	36	17	71551517	71551517	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	71551517	71551517	C	A	SNP	SRP68	NM_014230	human	genbank	54_36p	-1	reviewed	missense	c.1512	p.K504N	0.82	NULL	superfamily_TPR-like	-	no_errors
GPS2	2874	genome.wustl.edu	36	17	7157157	7157157	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7157157	7157157	C	T	SNP	GPS2	NM_004489	human	genbank	54_36p	-1	reviewed	missense	c.815	p.R272H	1	NULL	NULL	-	no_errors
GPS2	2874	genome.wustl.edu	36	17	7157457	7157470	+	Frame_Shift_Del	DEL	ATAGGGCTGTGGCT	ATAGGGCTGTGGCT	-	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	ATAGGGCTGTGGCT	ATAGGGCTGTGGCT	ATAGGGCTGTGGCT	-	ATAGGGCTGTGGCT	ATAGGGCTGTGGCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7157457	7157470	ATAGGGCTGTGGCT	-	DEL	GPS2	NM_004489	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.690_677	p.Q226fs	0.594:0.991:1.000:1.000:0.999:0.995:0.996:0.998:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	"(deletion:cds_exon[7157423,7157512])"	no_errors
RNF157	114804	genome.wustl.edu	36	17	71672458	71672458	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	71672458	71672458	G	T	SNP	RNF157	NM_052916	human	genbank	54_36p	-1	validated	missense	c.686	p.T229N	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
QRICH2	84074	genome.wustl.edu	36	17	71799599	71799599	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	71799599	71799599	C	A	SNP	QRICH2	NM_032134	human	genbank	54_36p	-1	provisional	missense	c.2306	p.G769V	0.16	NULL	NULL	-	no_errors
MFSD11	79157	genome.wustl.edu	36	17	72285944	72285944	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	72285944	72285944	G	T	SNP	MFSD11	NM_024311	human	genbank	54_36p	1	provisional	missense	c.1265	p.G422V	1	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_DUF895"	-	no_errors
SEC14L1	6397	genome.wustl.edu	36	17	72717130	72717130	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	72717130	72717130	G	A	SNP	SEC14L1	NM_001039573	human	genbank	54_36p	1	reviewed	missense	c.1588	p.V530I	1	superfamily_Supernatant protein factor (SPF) C-terminal domain	"HMMPfam_PRELI,superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_CRAL_TRIO,superfamily_Supernatant protein factor (SPF) C-terminal domain"	-	no_errors
SEC14L1	6397	genome.wustl.edu	36	17	72719626	72719627	+	Splice_Site	DNP	GA	GA	TT	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	72719626	72719627	GA	TT	DNP	SEC14L1	NM_001039573	human	genbank	54_36p	1	reviewed	splice_site	c.1612-1_1612-1	e13-1	1.000:1.000	-	-	-	no_errors
TNRC6C	57690	genome.wustl.edu	36	17	73558434	73558434	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	73558434	73558434	G	T	SNP	TNRC6C	NM_018996	human	genbank	54_36p	1	validated	missense	c.1696	p.D566Y	1	NULL	"HMMPfam_Ago_hook,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1"	-	no_errors
DNAH17	8632	genome.wustl.edu	36	17	73934775	73934775	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	73934775	73934775	C	T	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.12583	p.V4195M	0.29	HMMPfam_Dynein_heavy	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy"	-	no_errors
DNAH17	8632	genome.wustl.edu	36	17	73999186	73999186	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	73999186	73999186	G	A	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	silent	c.6588	p.I2196	0.99	"HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH17	8632	genome.wustl.edu	36	17	74008900	74008900	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	74008900	74008900	C	A	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.5429	p.G1810V	1	NULL	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SENP3	26168	genome.wustl.edu	36	17	7409800	7409800	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7409800	7409800	G	A	SNP	SENP3	ENST00000321337	human	ensembl	54_36p	1	known	missense	c.1258	p.E420K	1	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48"	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48"	-	no_errors
LGALS3BP	3959	genome.wustl.edu	36	17	74480227	74480227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	74480227	74480227	C	A	SNP	LGALS3BP	NM_005567	human	genbank	54_36p	-1	reviewed	missense	c.784	p.D262Y	0.82	HMMPfam_BACK	"superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_BACK"	-	no_errors
C1QTNF1	114897	genome.wustl.edu	36	17	74555347	74555347	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	74555347	74555347	G	A	SNP	C1QTNF1	NM_030968	human	genbank	54_36p	1	validated	missense	c.428	p.S143N	0.96	"HMMSmart_C1Q,superfamily_TNF_like"	"HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q"	-	no_errors
ENPP7	339221	genome.wustl.edu	36	17	75319602	75319602	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75319602	75319602	G	C	SNP	ENPP7	NM_178543	human	genbank	54_36p	1	validated	missense	c.106	p.V36L	0.78	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	-	no_errors
CCDC40	55036	genome.wustl.edu	36	17	75646936	75646950	+	In_Frame_Del	DEL	ACATGCAGAACATCG	ACATGCAGAACATCG	-	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	ACATGCAGAACATCG	ACATGCAGAACATCG	ACATGCAGAACATCG	-	ACATGCAGAACATCG	ACATGCAGAACATCG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75646936	75646950	ACATGCAGAACATCG	-	DEL	CCDC40	NM_017950	human	genbank	54_36p	1	validated	in_frame_del	c.1208_1222	p.MQNID404in_frame_del	1.000:0.997:0.984:0.996:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:0.985:0.870:0.980	NULL	HMMPfam_BRE1	"(deletion:cds_exon[75646888,75647045])"	no_errors
CCDC40	55036	genome.wustl.edu	36	17	75676068	75676068	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75676068	75676068	C	T	SNP	CCDC40	NM_017950	human	genbank	54_36p	1	validated	silent	c.2517	p.D839	1	HMMPfam_BRE1	HMMPfam_BRE1	-	no_errors
EIF4A3	9775	genome.wustl.edu	36	17	75724488	75724488	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75724488	75724488	C	G	SNP	EIF4A3	NM_014740	human	genbank	54_36p	-1	reviewed	missense	c.1129	p.A377P	1	superfamily_SSF52540	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
CARD14	79092	genome.wustl.edu	36	17	75783617	75783617	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75783617	75783617	C	A	SNP	CARD14	NM_024110	human	genbank	54_36p	1	reviewed	silent	c.1389	p.S463	0.84	NULL	"superfamily_DEATH domain,HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH2	146754	genome.wustl.edu	36	17	7578653	7578653	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7578653	7578653	C	G	SNP	DNAH2	NM_020877	human	genbank	54_36p	1	validated	missense	c.880	p.Q294E	1	HMMPfam_DHC_N1	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
CARD14	79092	genome.wustl.edu	36	17	75792656	75792656	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75792656	75792656	C	T	SNP	CARD14	NM_024110	human	genbank	54_36p	1	reviewed	silent	c.2319	p.I773	1	NULL	"HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75932281	75932281	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75932281	75932281	C	G	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.432	p.F144L	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75934734	75934734	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75934734	75934734	G	T	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.2223	p.K741N	0	NULL	"HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75964249	75964249	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	17	75964249	75964249	T	A	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.7388	p.L2463H	0.51	NULL	"HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75964828	75964828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75964828	75964828	G	A	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.7537	p.D2513N	0	NULL	"HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
RNF213	57674	genome.wustl.edu	36	17	75978453	75978453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	75978453	75978453	C	T	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.9551	p.P3184L	0.47	NULL	"HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
DNAH2	146754	genome.wustl.edu	36	17	7601149	7601149	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7601149	7601149	C	G	SNP	DNAH2	NM_020877	human	genbank	54_36p	1	validated	silent	c.1920	p.L640	1	HMMPfam_DHC_N1	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH2	146754	genome.wustl.edu	36	17	7603513	7603513	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7603513	7603513	G	A	SNP	DNAH2	NM_020877	human	genbank	54_36p	1	validated	missense	c.2497	p.E833K	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH2	146754	genome.wustl.edu	36	17	7636358	7636358	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7636358	7636358	C	G	SNP	DNAH2	NM_020877	human	genbank	54_36p	1	validated	missense	c.7117	p.L2373V	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AZI1	22994	genome.wustl.edu	36	17	76788158	76788158	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	76788158	76788158	C	A	SNP	AZI1	NM_014984	human	genbank	54_36p	-1	validated	missense	c.979	p.A327S	0.99	NULL	NULL	-	no_errors
LSMD1	84316	genome.wustl.edu	36	17	7701360	7701360	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7701360	7701360	G	A	SNP	LSMD1	NM_032356	human	genbank	54_36p	-1	provisional	missense	c.107	p.T36I	1	NULL	"superfamily_Sm_like_riboprot,HMMPfam_LSM,HMMSmart_Sm"	-	no_errors
ACTG1	71	genome.wustl.edu	36	17	77092914	77092914	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	77092914	77092914	A	T	SNP	ACTG1	NM_001614	human	genbank	54_36p	-1	reviewed	missense	c.697	p.S233T	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
HGS	9146	genome.wustl.edu	36	17	77263777	77263777	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	77263777	77263777	G	A	SNP	HGS	NM_004712	human	genbank	54_36p	1	provisional	silent	c.153	p.K51	1	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288"	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE,HMMPfam_UIM"	-	no_errors
KCNAB3	9196	genome.wustl.edu	36	17	7768240	7768240	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7768240	7768240	C	T	SNP	KCNAB3	NM_004732	human	genbank	54_36p	-1	reviewed	silent	c.780	p.L260	1	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red"	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red"	-	no_errors
CCDC57	284001	genome.wustl.edu	36	17	77739575	77739575	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	77739575	77739575	C	G	SNP	CCDC57	NM_198082	human	genbank	54_36p	-1	validated	missense	c.861	p.E287D	1	NULL	NULL	-	no_errors
HEXDC	284004	genome.wustl.edu	36	17	77984922	77984922	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	77984922	77984922	G	C	SNP	HEXDC	NM_173620	human	genbank	54_36p	1	validated	missense	c.382	p.A128P	0.71	"HMMPfam_Glyco_hydro_20,superfamily_Glyco_hydro_cat"	"HMMPfam_Glyco_hydro_20,superfamily_Glyco_hydro_cat"	-	no_errors
WDR45L	56270	genome.wustl.edu	36	17	78167729	78167729	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	78167729	78167729	C	A	SNP	WDR45L	NM_019613	human	genbank	54_36p	-1	reviewed	silent	c.888	p.P296	0.79	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	-	no_errors
ALOX15B	247	genome.wustl.edu	36	17	7889617	7889617	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7889617	7889617	C	T	SNP	ALOX15B	NM_001141	human	genbank	54_36p	1	reviewed	missense	c.1088	p.A363V	0.04	"superfamily_Lipoxigenase,HMMPfam_Lipoxygenase"	"HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),superfamily_Lipoxigenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2,PatternScan_IG_MHC"	-	no_errors
PFAS	5198	genome.wustl.edu	36	17	8099559	8099559	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	8099559	8099559	G	A	SNP	PFAS	NM_012393	human	genbank	54_36p	1	reviewed	silent	c.399	p.P133	0	superfamily_PurS-like	"superfamily_PurS-like,superfamily_FGAM synthase PurL linker domain,superfamily_PurM N-terminal domain-like,HMMPfam_AIRS,superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C,superfamily_Class I glutamine amidotransferase-like"	-	no_errors
ARHGEF15	22899	genome.wustl.edu	36	17	8156242	8156242	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	8156242	8156242	C	G	SNP	ARHGEF15	NM_173728	human	genbank	54_36p	1	reviewed	missense	c.160	p.P54A	0	NULL	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729"	-	no_errors
ARHGEF15	22899	genome.wustl.edu	36	17	8163429	8163429	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	8163429	8163429	A	G	SNP	ARHGEF15	NM_173728	human	genbank	54_36p	1	reviewed	missense	c.2261	p.E754G	1	NULL	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,PatternScan_DH_1,superfamily_SSF50729"	-	no_errors
ODF4	146852	genome.wustl.edu	36	17	8189457	8189457	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	8189457	8189457	T	A	SNP	ODF4	NM_153007	human	genbank	54_36p	1	reviewed	missense	c.526	p.S176T	0.01	NULL	NULL	-	no_errors
MYH10	4628	genome.wustl.edu	36	17	8337021	8337021	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	8337021	8337021	T	C	SNP	MYH10	NM_005964	human	genbank	54_36p	-1	validated	missense	c.4163	p.E1388G	1	HMMPfam_Myosin_tail_1	"superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
MYH10	4628	genome.wustl.edu	36	17	8362699	8362699	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	8362699	8362699	C	T	SNP	MYH10	NM_005964	human	genbank	54_36p	-1	validated	missense	c.2386	p.V796I	1	"HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Myosin S1 fragment N-terminal domain,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CCDC42	146849	genome.wustl.edu	36	17	8587687	8587687	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	8587687	8587687	C	A	SNP	CCDC42	NM_144681	human	genbank	54_36p	-1	provisional	missense	c.276	p.K92N	1	NULL	NULL	-	no_errors
USP43	124739	genome.wustl.edu	36	17	9572024	9572024	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	9572024	9572024	G	T	SNP	USP43	NM_153210	human	genbank	54_36p	1	validated	silent	c.2364	p.R788	0.04	NULL	"superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
ENSG00000196285	0	genome.wustl.edu	36	2	175292945	175292945	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	175292945	175292945	G	A	SNP	ENSG00000196285	ENST00000375183	human	ensembl	54_36p	1	known	missense	c.64	p.A22T	1	superfamily_Histone-fold	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
LOC100131991	100131991	genome.wustl.edu	36	2	177382523	177382523	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	177382523	177382523	G	C	SNP	LOC100131991	XM_001722203	human	genbank	54_36p	-1	model	missense	c.200	p.P67R	0.01	NULL	NULL	-	pseudogene
FAM38B	63895	genome.wustl.edu	36	18	10681284	10681284	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	10681284	10681284	G	A	SNP	FAM38B	NM_022068	human	genbank	54_36p	-1	predicted	nonsense	c.514	p.R172*	0.99	NULL	NULL	-	no_errors
LOC729602	729602	genome.wustl.edu	36	18	11619696	11619696	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	18	11619696	11619696	C	T	SNP	LOC729602	XM_001717235	human	genbank	54_36p	-1	model	silent	c.141	p.A47	0	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
GNAL	2774	genome.wustl.edu	36	18	11870995	11870995	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	11870995	11870995	G	C	SNP	GNAL	NM_182978	human	genbank	54_36p	1	validated	missense	c.1238	p.S413T	1	"HMMPfam_G-alpha,superfamily_SSF52540"	"HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert"	-	no_errors
LOC728211	728211	genome.wustl.edu	36	18	12065599	12065599	+	RNA	SNP	G	A	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	12065599	12065599	G	A	SNP	LOC728211	XR_015403	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC728211	728211	genome.wustl.edu	36	18	12066319	12066319	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	12066319	12066319	A	T	SNP	LOC728211	XR_015403	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.98	-	-	-	pseudogene
CIDEA	1149	genome.wustl.edu	36	18	12264107	12264107	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	12264107	12264107	C	A	SNP	CIDEA	NM_198289	human	genbank	54_36p	1	reviewed	missense	c.448	p.P150T	0.33	superfamily_SSF54277	"superfamily_SSF54277,HMMPfam_CIDE-N,HMMSmart_CAD"	-	no_errors
C18orf1	753	genome.wustl.edu	36	18	13428245	13428245	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	13428245	13428245	T	A	SNP	C18orf1	NM_181481	human	genbank	54_36p	1	validated	missense	c.43	p.C15S	1	"superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192"	"superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
MC5R	4161	genome.wustl.edu	36	18	13816421	13816421	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	13816421	13816421	C	T	SNP	MC5R	NM_005913	human	genbank	54_36p	1	provisional	silent	c.657	p.I219	0.59	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MC2R	4158	genome.wustl.edu	36	18	13874639	13874639	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	13874639	13874639	G	A	SNP	MC2R	NM_000529	human	genbank	54_36p	-1	reviewed	silent	c.879	p.C293	0.07	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LOC646359	646359	genome.wustl.edu	36	18	14367947	14367947	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	18	14367947	14367947	T	C	SNP	LOC646359	XM_929288	human	genbank	54_36p	-1	model	silent	c.816	p.E272	0.01	NULL	"superfamily_Telomeric repeat binding factor (TRF) dimerisation domain,HMMPfam_TRF,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
ANKRD30B	374860	genome.wustl.edu	36	18	14772535	14772535	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	14772535	14772535	G	T	SNP	ANKRD30B	ENST00000358984	human	ensembl	54_36p	1	known	nonsense	c.1492	p.E498*	0	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
MIB1	57534	genome.wustl.edu	36	18	17683210	17683210	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	17683210	17683210	G	C	SNP	MIB1	NM_020774	human	genbank	54_36p	1	validated	missense	c.2449	p.E817Q	1	superfamily_SSF57850	"PatternScan_ZF_RING_1,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
RIOK3	8780	genome.wustl.edu	36	18	19313300	19313300	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19313300	19313300	A	C	SNP	RIOK3	NM_003831	human	genbank	54_36p	1	reviewed	missense	c.1366	p.K456Q	0.3	"HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1"	"HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1,PatternScan_RIO1"	-	no_errors
C18orf8	29919	genome.wustl.edu	36	18	19354206	19354206	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19354206	19354206	G	A	SNP	C18orf8	NM_013326	human	genbank	54_36p	1	validated	missense	c.892	p.G298S	1	NULL	HMMPfam_Mic1	-	no_errors
NPC1	257641	genome.wustl.edu	36	18	19372552	19372552	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19372552	19372552	A	C	SNP	NPC1	NM_000271	human	genbank	54_36p	-1	validated	missense	c.2993	p.F998C	1	HMMPfam_Patched	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
NPC1	257641	genome.wustl.edu	36	18	19375349	19375349	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19375349	19375349	C	A	SNP	NPC1	NM_000271	human	genbank	54_36p	-1	validated	silent	c.2292	p.A764	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
ANKRD29	147463	genome.wustl.edu	36	18	19468108	19468108	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19468108	19468108	C	T	SNP	ANKRD29	NM_173505	human	genbank	54_36p	-1	validated	missense	c.334	p.G112R	0.99	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank"	-	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19701848	19701848	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19701848	19701848	G	A	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.4736	p.R1579Q	0.9	"HMMSmart_SM00281,HMMPfam_Laminin_B"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19741770	19741770	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19741770	19741770	C	A	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.6888	p.N2296K	0	HMMPfam_Laminin_II	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19765088	19765088	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	19765088	19765088	G	T	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.8501	p.S2834I	0	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
OSBPL1A	114876	genome.wustl.edu	36	18	20030112	20030112	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	20030112	20030112	C	G	SNP	OSBPL1A	NM_080597	human	genbank	54_36p	-1	reviewed	missense	c.1652	p.S551T	1	HMMPfam_Oxysterol_BP	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
OSBPL1A	114876	genome.wustl.edu	36	18	20151128	20151128	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	20151128	20151128	T	G	SNP	OSBPL1A	NM_080597	human	genbank	54_36p	-1	reviewed	missense	c.853	p.T285P	1	"HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_Oxysterol_BP,HMMSmart_SM00233,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,PatternScan_OSBP,superfamily_PH domain-like"	-	no_errors
HRH4	59340	genome.wustl.edu	36	18	20311168	20311168	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	20311168	20311168	G	T	SNP	HRH4	NM_021624	human	genbank	54_36p	1	reviewed	missense	c.817	p.A273S	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HRH4	59340	genome.wustl.edu	36	18	20311424	20311424	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	20311424	20311424	A	T	SNP	HRH4	NM_021624	human	genbank	54_36p	1	reviewed	missense	c.1073	p.Y358F	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
ZNF521	25925	genome.wustl.edu	36	18	21060155	21060155	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	21060155	21060155	A	T	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	silent	c.1725	p.L575	0.96	HMMSmart_SM00355	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CHST9	83539	genome.wustl.edu	36	18	22750325	22750325	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	22750325	22750325	C	T	SNP	CHST9	NM_031422	human	genbank	54_36p	-1	validated	missense	c.1228	p.V410M	0.96	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
CHST9	83539	genome.wustl.edu	36	18	22750360	22750360	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	22750360	22750360	C	T	SNP	CHST9	NM_031422	human	genbank	54_36p	-1	validated	missense	c.1193	p.R398K	1	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
DSC3	1825	genome.wustl.edu	36	18	26859880	26859880	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	26859880	26859880	C	A	SNP	DSC3	NM_001941	human	genbank	54_36p	-1	reviewed	splice_site	c.475-1	e5-1	1	-	-	-	no_errors
DSC2	1824	genome.wustl.edu	36	18	26920671	26920671	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	26920671	26920671	T	A	SNP	DSC2	NM_024422	human	genbank	54_36p	-1	reviewed	nonsense	c.808	p.K270*	0.32	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DSC1	1823	genome.wustl.edu	36	18	26968696	26968696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	26968696	26968696	G	T	SNP	DSC1	NM_024421	human	genbank	54_36p	-1	reviewed	missense	c.1713	p.N571K	0.88	"superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1"	"HMMPfam_Cadherin_pro,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DSG1	1828	genome.wustl.edu	36	18	27167633	27167633	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	27167633	27167633	C	A	SNP	DSG1	NM_001942	human	genbank	54_36p	1	reviewed	missense	c.768	p.N256K	0.15	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C,PatternScan_PHOSPHOPANTETHEINE"	-	no_errors
DSG1	1828	genome.wustl.edu	36	18	27168027	27168027	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	27168027	27168027	T	A	SNP	DSG1	NM_001942	human	genbank	54_36p	1	reviewed	missense	c.869	p.I290N	0.22	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,PatternScan_PHOSPHOPANTETHEINE,superfamily_Cadherin-like"	-	no_errors
DSG4	147409	genome.wustl.edu	36	18	27247334	27247334	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	27247334	27247334	A	T	SNP	DSG4	NM_177986	human	genbank	54_36p	1	validated	missense	c.2901	p.R967S	0.98	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DSG3	1830	genome.wustl.edu	36	18	27309842	27309842	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	27309842	27309842	C	A	SNP	DSG3	NM_001944	human	genbank	54_36p	1	reviewed	missense	c.2621	p.S874Y	0	NULL	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin,PatternScan_CADHERIN_1"	-	no_errors
DSG2	1829	genome.wustl.edu	36	18	27370347	27370347	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	27370347	27370347	A	T	SNP	DSG2	NM_001943	human	genbank	54_36p	1	reviewed	missense	c.1608	p.K536N	0.96	superfamily_Cadherin	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1"	-	no_errors
TRAPPC8	22878	genome.wustl.edu	36	18	27698596	27698596	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	27698596	27698596	G	A	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	silent	c.2737	p.L913	1	NULL	superfamily_TPR-like	-	no_errors
NOL4	8715	genome.wustl.edu	36	18	29939023	29939023	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	29939023	29939023	T	G	SNP	NOL4	NM_003787	human	genbank	54_36p	-1	validated	missense	c.514	p.T172P	1	NULL	NULL	-	no_errors
NOL4	8715	genome.wustl.edu	36	18	30057084	30057084	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	30057084	30057084	C	A	SNP	NOL4	NM_003787	human	genbank	54_36p	-1	validated	missense	c.132	p.E44D	1	NULL	NULL	-	no_errors
DTNA	1837	genome.wustl.edu	36	18	30652245	30652245	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	30652245	30652245	G	C	SNP	DTNA	NM_001390	human	genbank	54_36p	1	reviewed	missense	c.829	p.G277R	0.98	"HMMSmart_SM00291,HMMPfam_ZZ"	"superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
MYOM1	8736	genome.wustl.edu	36	18	3069264	3069264	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	3069264	3069264	G	C	SNP	MYOM1	NM_003803	human	genbank	54_36p	-1	reviewed	missense	c.4561	p.P1521A	1	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set"	-	no_errors
MYOM1	8736	genome.wustl.edu	36	18	3092608	3092608	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	3092608	3092608	T	G	SNP	MYOM1	NM_003803	human	genbank	54_36p	-1	reviewed	missense	c.3439	p.N1147H	0.6	"HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
GALNT1	2589	genome.wustl.edu	36	18	31526181	31526181	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	31526181	31526181	G	A	SNP	GALNT1	NM_020474	human	genbank	54_36p	1	reviewed	missense	c.1198	p.V400I	0.78	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
CELF4	56853	genome.wustl.edu	36	18	33399517	33399517	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	33399517	33399517	C	G	SNP	BRUNOL4	NM_020180	human	genbank	54_36p	-1	reviewed	missense	c.86	p.S29T	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
COLEC12	81035	genome.wustl.edu	36	18	336824	336824	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	336824	336824	C	G	SNP	COLEC12	NM_130386	human	genbank	54_36p	-1	validated	missense	c.798	p.Q266H	1	NULL	"HMMPfam_Collagen,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
PIK3C3	5289	genome.wustl.edu	36	18	37854608	37854608	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	18	37854608	37854608	C	A	SNP	PIK3C3	NM_002647	human	genbank	54_36p	1	validated	silent	c.1425	p.L475	1	"superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka"	"HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
RIT2	6014	genome.wustl.edu	36	18	38808108	38808108	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	38808108	38808108	C	T	SNP	RIT2	NM_002930	human	genbank	54_36p	-1	provisional	missense	c.163	p.D55N	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
SLC14A2	8170	genome.wustl.edu	36	18	41516374	41516374	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	41516374	41516374	G	A	SNP	SLC14A2	NM_007163	human	genbank	54_36p	1	validated	silent	c.2655	p.P885	0.43	NULL	"HMMPfam_UT,PatternScan_MULTICOPPER_OXIDASE1"	-	no_errors
PSTPIP2	9050	genome.wustl.edu	36	18	41832788	41832788	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	41832788	41832788	C	T	SNP	PSTPIP2	NM_024430	human	genbank	54_36p	-1	validated	missense	c.532	p.A178T	1	NULL	"HMMPfam_FCH,HMMSmart_FCH"	-	no_errors
HAUS1	115106	genome.wustl.edu	36	18	41962078	41962078	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	41962078	41962078	A	T	SNP	CCDC5	NM_138443	human	genbank	54_36p	1	validated	missense	c.826	p.M276L	1	NULL	NULL	-	no_errors
TCEB3B	51224	genome.wustl.edu	36	18	42814012	42814012	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	42814012	42814012	G	T	SNP	TCEB3B	NM_016427	human	genbank	54_36p	-1	reviewed	missense	c.1622	p.P541Q	0	NULL	"HMMPfam_TFIIS,HMMSmart_TFS2N,HMMPfam_Elongin_A"	-	no_errors
TCEB3B	51224	genome.wustl.edu	36	18	42814047	42814047	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	42814047	42814047	C	T	SNP	TCEB3B	NM_016427	human	genbank	54_36p	-1	reviewed	silent	c.1587	p.L529	0	NULL	"HMMSmart_TFS2N,HMMPfam_Elongin_A,HMMPfam_TFIIS"	-	no_errors
KATNAL2	83473	genome.wustl.edu	36	18	42843400	42843400	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	42843400	42843400	A	G	SNP	KATNAL2	NM_031303	human	genbank	54_36p	1	provisional	silent	c.393	p.E131	0.98	NULL	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA"	-	no_errors
KIAA0427	9811	genome.wustl.edu	36	18	44538502	44538502	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	44538502	44538502	G	A	SNP	KIAA0427	NM_014772	human	genbank	54_36p	1	validated	missense	c.799	p.A267T	0	NULL	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543"	-	no_errors
ACAA2	10449	genome.wustl.edu	36	18	45564297	45564297	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	45564297	45564297	C	G	SNP	ACAA2	NM_006111	human	genbank	54_36p	-1	reviewed	missense	c.1112	p.R371P	1	"HMMPfam_Thiolase_C,superfamily_Thiolase-like"	"superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3"	-	no_errors
CCDC11	220136	genome.wustl.edu	36	18	46042428	46042428	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	46042428	46042428	T	A	SNP	CCDC11	NM_145020	human	genbank	54_36p	-1	validated	missense	c.229	p.S77C	0.01	NULL	NULL	-	no_errors
MBD1	4152	genome.wustl.edu	36	18	46054167	46054167	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	46054167	46054167	C	T	SNP	MBD1	NM_015846	human	genbank	54_36p	-1	reviewed	missense	c.1211	p.R404H	0.03	NULL	"HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,HMMPfam_zf-CXXC"	-	no_errors
CXXC1	30827	genome.wustl.edu	36	18	46065702	46065702	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	46065702	46065702	G	C	SNP	CXXC1	NM_001101654	human	genbank	54_36p	-1	validated	missense	c.657	p.F219L	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_zf-CXXC"	-	no_errors
SKA1	220134	genome.wustl.edu	36	18	46171614	46171614	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	18	46171614	46171614	G	A	SNP	C18orf24	NM_001039535	human	genbank	54_36p	1	validated	missense	c.572	p.R191K	1	HMMPfam_DUF1395	HMMPfam_DUF1395	-	no_errors
MEX3C	51320	genome.wustl.edu	36	18	46957664	46957664	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	46957664	46957664	T	G	SNP	MEX3C	NM_016626	human	genbank	54_36p	-1	validated	missense	c.1035	p.K345N	1	"superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1"	"PatternScan_ZF_RING_1,HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
DCC	1630	genome.wustl.edu	36	18	48937840	48937840	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	48937840	48937840	C	G	SNP	DCC	NM_005215	human	genbank	54_36p	1	validated	missense	c.1378	p.Q460E	1	"HMMSmart_SM00409,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C"	-	no_errors
POLI	11201	genome.wustl.edu	36	18	50054322	50054322	+	Silent	SNP	C	A	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	A	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	18	50054322	50054322	C	A	SNP	POLI	NM_007195	human	genbank	54_36p	1	validated	silent	c.270	p.T90	1	"superfamily_DNA/RNA polymerases,HMMPfam_IMS"	"superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain"	-	no_errors
STARD6	147323	genome.wustl.edu	36	18	50105217	50105217	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	50105217	50105217	A	G	SNP	STARD6	NM_139171	human	genbank	54_36p	-1	provisional	missense	c.506	p.M169T	1	"superfamily_SSF55961,HMMPfam_START,HMMSmart_START"	"superfamily_SSF55961,HMMPfam_START,HMMSmart_START"	-	no_errors
C18orf54	162681	genome.wustl.edu	36	18	50143231	50143231	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	18	50143231	50143231	C	G	SNP	C18orf54	NM_173529	human	genbank	54_36p	1	validated	missense	c.682	p.P228A	1	NULL	NULL	-	no_errors
TCF4	6925	genome.wustl.edu	36	18	51046486	51046486	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	51046486	51046486	C	A	SNP	TCF4	NM_001083962	human	genbank	54_36p	-1	reviewed	nonsense	c.1984	p.G662*	1	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
EPB41L3	23136	genome.wustl.edu	36	18	5435240	5435240	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	5435240	5435240	G	A	SNP	EPB41L3	NM_012307	human	genbank	54_36p	-1	provisional	missense	c.385	p.R129C	1	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N"	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD"	-	no_errors
ALPK2	115701	genome.wustl.edu	36	18	54355093	54355093	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	54355093	54355093	C	T	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	silent	c.3306	p.Q1102	0	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase"	-	no_errors
ALPK2	115701	genome.wustl.edu	36	18	54356376	54356376	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	54356376	54356376	C	G	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	missense	c.2023	p.E675Q	0.05	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
LOC728115	728115	genome.wustl.edu	36	18	55834885	55834893	+	RNA	DEL	AAAAAAAAA	AAAAAAAAA	-	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	AAAAAAAAA	AAAAAAAAA	AAAAAAAAA	-	AAAAAAAAA	AAAAAAAAA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	55834885	55834893	AAAAAAAAA	-	DEL	LOC728115	XR_038858	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.023:0.025:0.028:0.029:0.031:0.032:0.033:0.033:0.033	-	-	"(deletion:rna[55832836,55835854])"	pseudogene
KIAA1468	57614	genome.wustl.edu	36	18	58045512	58045512	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	58045512	58045512	T	G	SNP	KIAA1468	NM_020854	human	genbank	54_36p	1	validated	nonsense	c.869	p.L290*	1	NULL	"HMMSmart_SM00667,superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
SERPINB11	89778	genome.wustl.edu	36	18	59541552	59541552	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	59541552	59541552	T	A	SNP	SERPINB11	ENST00000382749	human	ensembl	54_36p	1	known	missense	c.512	p.F171Y	1	"HMMSmart_SM00093,HMMPfam_Serpin,superfamily_Serpins,PatternScan_SERPIN"	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
CDH7	1005	genome.wustl.edu	36	18	61698977	61698977	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	61698977	61698977	C	T	SNP	CDH7	NM_004361	human	genbank	54_36p	1	reviewed	missense	c.2225	p.A742V	1	HMMPfam_Cadherin_C	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH19	28513	genome.wustl.edu	36	18	62329838	62329838	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	62329838	62329838	T	A	SNP	CDH19	NM_021153	human	genbank	54_36p	-1	reviewed	missense	c.1523	p.N508I	0.78	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
DSEL	92126	genome.wustl.edu	36	18	63331960	63331961	+	Frame_Shift_Del	DEL	TG	TG	-	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	TG	TG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	18	63331960	63331961	TG	-	DEL	DSEL	NM_032160	human	genbank	54_36p	-1	validated	frame_shift_del	c.896_895	p.Q299fs	1.000:1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	"(deletion:cds_exon[63329187,63332855])"	no_errors
TMX3	54495	genome.wustl.edu	36	18	64532110	64532110	+	Silent	SNP	T	A	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	18	64532110	64532110	T	A	SNP	TMX3	NM_019022	human	genbank	54_36p	-1	validated	silent	c.54	p.V18	0.14	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1"	-	no_errors
CCDC102B	79839	genome.wustl.edu	36	18	64829163	64829163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	64829163	64829163	C	T	SNP	CCDC102B	NM_001093729	human	genbank	54_36p	1	validated	missense	c.1276	p.L426F	0.62	NULL	NULL	-	no_errors
LAMA1	284217	genome.wustl.edu	36	18	6989910	6989910	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	18	6989910	6989910	C	T	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.4469	p.R1490K	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA1	284217	genome.wustl.edu	36	18	7005726	7005726	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	7005726	7005726	A	T	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.3121	p.C1041S	1	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
ZNF407	55628	genome.wustl.edu	36	18	70718207	70718207	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	18	70718207	70718207	A	T	SNP	ZNF407	NM_017757	human	genbank	54_36p	1	provisional	missense	c.4944	p.K1648N	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00451,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
YES1	7525	genome.wustl.edu	36	18	714573	714573	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	714573	714573	G	A	SNP	YES1	NM_005433	human	genbank	54_36p	-1	reviewed	nonsense	c.1483	p.Q495*	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
LRRC30	339291	genome.wustl.edu	36	18	7221563	7221563	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	7221563	7221563	G	T	SNP	LRRC30	NM_001105581	human	genbank	54_36p	1	provisional	nonsense	c.427	p.E143*	1	"superfamily_SSF52058,HMMPfam_LRR_1"	"superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
ZNF516	9658	genome.wustl.edu	36	18	72220900	72220900	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	72220900	72220900	C	G	SNP	ZNF516	ENST00000217537	human	ensembl	54_36p	-1	known	missense	c.2158	p.G720R	0	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF236	7776	genome.wustl.edu	36	18	72692796	72692796	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	72692796	72692796	G	A	SNP	ZNF236	NM_007345	human	genbank	54_36p	1	validated	silent	c.270	p.G90	0.99	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF236	7776	genome.wustl.edu	36	18	72800760	72800760	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	72800760	72800760	G	A	SNP	ZNF236	NM_007345	human	genbank	54_36p	1	validated	missense	c.5236	p.G1746R	1	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
SALL3	27164	genome.wustl.edu	36	18	74858167	74858167	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	74858167	74858167	G	T	SNP	SALL3	NM_171999	human	genbank	54_36p	1	validated	missense	c.3760	p.G1254C	0.86	NULL	"HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ATP9B	374868	genome.wustl.edu	36	18	75164596	75164596	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	75164596	75164596	C	A	SNP	ATP9B	NM_198531	human	genbank	54_36p	1	validated	silent	c.1416	p.T472	1	"superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2"	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
NFATC1	4772	genome.wustl.edu	36	18	75294569	75294569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	75294569	75294569	C	T	SNP	NFATC1	NM_172387	human	genbank	54_36p	1	reviewed	missense	c.1190	p.P397L	1	NULL	"superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
NFATC1	4772	genome.wustl.edu	36	18	75328608	75328608	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	75328608	75328608	G	A	SNP	NFATC1	NM_172390	human	genbank	54_36p	1	reviewed	silent	c.2130	p.E710	0	NULL	"HMMPfam_TIG,HMMSmart_SM00429,superfamily_p53-like transcription factors,HMMPfam_RHD,superfamily_E set domains"	-	no_errors
ADNP2	22850	genome.wustl.edu	36	18	75996890	75996890	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	75996890	75996890	G	T	SNP	ADNP2	NM_014913	human	genbank	54_36p	1	validated	missense	c.2603	p.G868V	0	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00389"	-	no_errors
ADNP2	22850	genome.wustl.edu	36	18	75997035	75997035	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	75997035	75997035	C	T	SNP	ADNP2	NM_014913	human	genbank	54_36p	1	validated	silent	c.2748	p.I916	1	NULL	"HMMSmart_SM00389,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
PTPRM	5797	genome.wustl.edu	36	18	7939198	7939198	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	7939198	7939198	C	T	SNP	PTPRM	NM_001105244	human	genbank	54_36p	1	reviewed	missense	c.683	p.A228V	1	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	###############################################################################################################################################################################################################################################################	-	no_errors
KIAA0802	23255	genome.wustl.edu	36	18	8774735	8774735	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	8774735	8774735	C	A	SNP	KIAA0802	NM_015210	human	genbank	54_36p	1	predicted	missense	c.1625	p.P542H	1	NULL	NULL	-	no_errors
KIAA0802	23255	genome.wustl.edu	36	18	8809131	8809131	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	8809131	8809131	G	A	SNP	KIAA0802	NM_015210	human	genbank	54_36p	1	predicted	silent	c.3030	p.K1010	1	NULL	NULL	-	no_errors
KIAA0802	23255	genome.wustl.edu	36	18	8816019	8816019	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	8816019	8816019	G	T	SNP	KIAA0802	NM_015210	human	genbank	54_36p	1	predicted	missense	c.4511	p.C1504F	0.11	NULL	NULL	-	no_errors
KIAA0802	23255	genome.wustl.edu	36	18	8816031	8816031	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	8816031	8816031	G	T	SNP	KIAA0802	NM_015210	human	genbank	54_36p	1	predicted	missense	c.4523	p.G1508V	0.34	NULL	NULL	-	no_errors
NDUFV2	4729	genome.wustl.edu	36	18	9112597	9112597	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	9112597	9112597	G	A	SNP	NDUFV2	NM_021074	human	genbank	54_36p	1	validated	silent	c.387	p.K129	1	"HMMPfam_Complex1_24kDa,superfamily_Thiordxn-like_fd"	"HMMPfam_Complex1_24kDa,superfamily_Thiordxn-like_fd,PatternScan_COMPLEX1_24K"	-	no_errors
ENSG00000215398	0	genome.wustl.edu	36	14	18188280	18188280	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	18188280	18188280	C	T	SNP	ENSG00000215398	ENST00000400208	human	ensembl	54_36p	1	known	missense	c.619	p.R207C	0.02	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE"	-	no_start_codon
LOC100132918	100132918	genome.wustl.edu	36	3	183661550	183661550	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	183661550	183661550	G	A	SNP	LOC100132918	XR_042313	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.08	-	-	-	pseudogene
LOC646057	646057	genome.wustl.edu	36	15	18452955	18452955	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	18452955	18452955	G	A	SNP	LOC646057	XM_001716562	human	genbank	54_36p	-1	model	silent	c.684	p.T228	0.98	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_errors
LOC100128765	100128765	genome.wustl.edu	36	13	18601176	18601176	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	18601176	18601176	G	T	SNP	LOC100128765	XM_001714904	human	genbank	54_36p	1	model	missense	c.279	p.W93C	0.67	HMMPfam_Mis6	HMMPfam_Mis6	-	no_errors
P2RY11	5032	genome.wustl.edu	36	19	10085364	10085364	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	10085364	10085364	G	C	SNP	P2RY11	NM_002566	human	genbank	54_36p	1	reviewed	silent	c.75	p.G25	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
KRI1	65095	genome.wustl.edu	36	19	10531330	10531330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	10531330	10531330	T	C	SNP	KRI1	NM_023008	human	genbank	54_36p	-1	validated	missense	c.1000	p.R334G	1	NULL	HMMPfam_Kri1	-	no_errors
AP1M2	10053	genome.wustl.edu	36	19	10550606	10550606	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	10550606	10550606	C	G	SNP	AP1M2	NM_005498	human	genbank	54_36p	-1	reviewed	missense	c.850	p.E284Q	1	"HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor"	"superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_2"	-	no_errors
AP1M2	10053	genome.wustl.edu	36	19	10551457	10551457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	10551457	10551457	G	A	SNP	AP1M2	NM_005498	human	genbank	54_36p	-1	reviewed	missense	c.751	p.R251C	1	"HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor"	"HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2"	-	no_errors
TMED1	11018	genome.wustl.edu	36	19	10806651	10806651	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	10806651	10806651	C	T	SNP	TMED1	NM_006858	human	genbank	54_36p	-1	reviewed	missense	c.424	p.E142K	1	HMMPfam_EMP24_GP25L	"HMMPfam_EMP24_GP25L,superfamily_SSF101576"	-	no_errors
TMED1	11018	genome.wustl.edu	36	19	10806964	10806964	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	10806964	10806964	G	T	SNP	TMED1	NM_006858	human	genbank	54_36p	-1	reviewed	silent	c.249	p.V83	1	"HMMPfam_EMP24_GP25L,superfamily_SSF101576"	"HMMPfam_EMP24_GP25L,superfamily_SSF101576"	-	no_errors
SMARCA4	6597	genome.wustl.edu	36	19	10990635	10990635	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	10990635	10990635	C	A	SNP	SMARCA4	NM_003072	human	genbank	54_36p	1	reviewed	missense	c.2441	p.T814K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N"	###############################################################################################################################################################################################################################################################	-	no_errors
LDLR	3949	genome.wustl.edu	36	19	11101342	11101342	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	11101342	11101342	C	T	SNP	LDLR	NM_000527	human	genbank	54_36p	1	reviewed	missense	c.2543	p.P848L	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DOCK6	57572	genome.wustl.edu	36	19	11172437	11172437	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	11172437	11172437	C	T	SNP	DOCK6	NM_020812	human	genbank	54_36p	-1	validated	missense	c.5894	p.R1965Q	1	HMMPfam_Ded_cyto	HMMPfam_Ded_cyto	-	no_errors
RGL3	57139	genome.wustl.edu	36	19	11387798	11387798	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	11387798	11387798	C	T	SNP	RGL3	NM_001035223	human	genbank	54_36p	-1	provisional	nonsense	c.452	p.W151*	1	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N"	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMSmart_SM00314,HMMPfam_RA"	-	no_errors
RGL3	57139	genome.wustl.edu	36	19	11388320	11388320	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	11388320	11388320	C	T	SNP	RGL3	NM_001035223	human	genbank	54_36p	-1	provisional	silent	c.393	p.A131	0	"HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF"	"HMMPfam_RA,HMMSmart_SM00314,HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_Ubiquitin-like"	-	no_errors
ECSIT	51295	genome.wustl.edu	36	19	11479353	11479353	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	11479353	11479353	A	G	SNP	ECSIT	NM_016581	human	genbank	54_36p	-1	validated	missense	c.970	p.W324R	1	NULL	HMMPfam_ECSIT	-	no_errors
ZNF833P	401898	genome.wustl.edu	36	19	11657542	11657542	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	11657542	11657542	T	A	SNP	ZNF833	NM_001013691	human	genbank	54_36p	1	validated	missense	c.501	p.S167R	0.01	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF491	126069	genome.wustl.edu	36	19	11778171	11778171	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	11778171	11778171	T	A	SNP	ZNF491	NM_152356	human	genbank	54_36p	1	validated	missense	c.403	p.F135I	0	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF799	90576	genome.wustl.edu	36	19	12362677	12362677	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12362677	12362677	G	T	SNP	ZNF799	NM_001080821	human	genbank	54_36p	-1	validated	missense	c.1535	p.A512D	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF799	90576	genome.wustl.edu	36	19	12363419	12363419	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12363419	12363419	A	G	SNP	ZNF799	NM_001080821	human	genbank	54_36p	-1	validated	missense	c.793	p.Y265H	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF791	163049	genome.wustl.edu	36	19	12600521	12600522	+	Frame_Shift_Del	DEL	TC	TC	-	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	TC	TC	TC	-	TC	TC	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12600521	12600522	TC	-	DEL	ZNF791	NM_153358	human	genbank	54_36p	1	validated	frame_shift_del	c.1178_1179	p.F393fs	0.988:0.982	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[12599535,12601074])"	no_errors
MAN2B1	4125	genome.wustl.edu	36	19	12636790	12636790	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12636790	12636790	T	A	SNP	MAN2B1	NM_000528	human	genbank	54_36p	-1	reviewed	missense	c.446	p.E149V	1	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
MAN2B1	4125	genome.wustl.edu	36	19	12637302	12637302	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12637302	12637302	G	C	SNP	MAN2B1	NM_000528	human	genbank	54_36p	-1	reviewed	missense	c.300	p.I100M	1	"HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl"	"HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688"	-	no_errors
TNPO2	30000	genome.wustl.edu	36	19	12675323	12675323	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12675323	12675323	G	C	SNP	TNPO2	NM_013433	human	genbank	54_36p	-1	validated	missense	c.2128	p.L710V	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_HEAT"	-	no_errors
ASNA1	439	genome.wustl.edu	36	19	12717529	12717529	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12717529	12717529	C	T	SNP	ASNA1	NM_004317	human	genbank	54_36p	1	validated	missense	c.565	p.R189W	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ArsA_ATPase"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ArsA_ATPase"	-	no_errors
HOOK2	29911	genome.wustl.edu	36	19	12742827	12742827	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12742827	12742827	G	A	SNP	HOOK2	NM_013312	human	genbank	54_36p	-1	validated	missense	c.821	p.A274V	0	HMMPfam_HOOK	HMMPfam_HOOK	-	no_errors
MAST1	22983	genome.wustl.edu	36	19	12830432	12830432	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12830432	12830432	G	C	SNP	MAST1	NM_014975	human	genbank	54_36p	1	provisional	missense	c.1245	p.Q415H	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
FARSA	2193	genome.wustl.edu	36	19	12902497	12902497	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12902497	12902497	G	A	SNP	FARSA	NM_004461	human	genbank	54_36p	-1	validated	missense	c.214	p.R72W	1	superfamily_Winged helix DNA-binding domain	"superfamily_Winged helix DNA-binding domain,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2d"	-	no_errors
DAND5	199699	genome.wustl.edu	36	19	12941509	12941509	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	12941509	12941509	T	G	SNP	DAND5	NM_152654	human	genbank	54_36p	1	reviewed	missense	c.35	p.L12R	0.11	NULL	HMMPfam_DAN	-	no_errors
CACNA1A	773	genome.wustl.edu	36	19	13186133	13186133	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	13186133	13186133	C	T	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	missense	c.5857	p.V1953M	1	HMMPfam_Ca_chan_IQ	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1A	773	genome.wustl.edu	36	19	13258396	13258396	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	13258396	13258396	C	G	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	missense	c.3477	p.K1159N	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1A	773	genome.wustl.edu	36	19	13280060	13280060	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	13280060	13280060	C	A	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	missense	c.1790	p.W597L	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
C19orf57	79173	genome.wustl.edu	36	19	13867340	13867340	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	13867340	13867340	T	G	SNP	C19orf57	NM_024323	human	genbank	54_36p	-1	predicted	silent	c.51	p.P17	0	NULL	NULL	-	no_errors
DCAF15	90379	genome.wustl.edu	36	19	13931608	13931608	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	13931608	13931608	A	G	SNP	LOC90379	NM_138353	human	genbank	54_36p	1	predicted	silent	c.1341	p.T447	0.71	NULL	NULL	-	no_errors
LPHN1	22859	genome.wustl.edu	36	19	14124354	14124354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14124354	14124354	G	C	SNP	LPHN1	NM_001008701	human	genbank	54_36p	-1	reviewed	missense	c.3510	p.I1170M	1	HMMPfam_Latrophilin	"HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin"	-	no_errors
DDX39	10212	genome.wustl.edu	36	19	14382893	14382893	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	14382893	14382893	C	T	SNP	DDX39	NM_005804	human	genbank	54_36p	-1	reviewed	missense	c.521	p.R174H	1	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
PKN1	5585	genome.wustl.edu	36	19	14441797	14441797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14441797	14441797	G	A	SNP	PKN1	NM_213560	human	genbank	54_36p	1	reviewed	missense	c.2308	p.E770K	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
EMR3	84658	genome.wustl.edu	36	19	14618991	14618991	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	14618991	14618991	A	C	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	splice_site	c.882+2	e8+2	0.86	-	-	-	no_errors
EMR3	84658	genome.wustl.edu	36	19	14619092	14619092	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14619092	14619092	A	G	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	silent	c.783	p.D261	0	NULL	"HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
EMR3	84658	genome.wustl.edu	36	19	14626803	14626803	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14626803	14626803	C	T	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	missense	c.568	p.D190N	0	NULL	"PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
EMR3	84658	genome.wustl.edu	36	19	14633798	14633798	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14633798	14633798	T	G	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	missense	c.332	p.N111T	0	"HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	"PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
EMR2	30817	genome.wustl.edu	36	19	14723306	14723306	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14723306	14723306	C	A	SNP	EMR2	NM_013447	human	genbank	54_36p	-1	reviewed	missense	c.1966	p.A656S	0.85	HMMPfam_7tm_2	"HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
OR7C1	26664	genome.wustl.edu	36	19	14771239	14771239	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14771239	14771239	G	A	SNP	OR7C1	NM_198944	human	genbank	54_36p	-1	validated	missense	c.710	p.A237V	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR7C2	26658	genome.wustl.edu	36	19	14913973	14913973	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14913973	14913973	G	A	SNP	OR7C2	NM_012377	human	genbank	54_36p	1	provisional	missense	c.673	p.V225I	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SLC1A6	6511	genome.wustl.edu	36	19	14928395	14928395	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14928395	14928395	G	A	SNP	SLC1A6	NM_005071	human	genbank	54_36p	-1	provisional	silent	c.1062	p.A354	0.01	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
CCDC105	126402	genome.wustl.edu	36	19	14994816	14994816	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	14994816	14994816	G	A	SNP	CCDC105	NM_173482	human	genbank	54_36p	1	provisional	missense	c.1385	p.R462H	1	NULL	NULL	-	no_errors
OR1I1	126370	genome.wustl.edu	36	19	15059451	15059451	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15059451	15059451	C	T	SNP	OR1I1	NM_001004713	human	genbank	54_36p	1	provisional	missense	c.575	p.T192M	0.95	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ILVBL	10994	genome.wustl.edu	36	19	15094783	15094783	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15094783	15094783	A	T	SNP	ILVBL	NM_006844	human	genbank	54_36p	-1	reviewed	missense	c.524	p.F175Y	0.99	"HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding)"	"HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding),superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_TPP_enzyme_M,HMMPfam_TPP_enzyme_C,PatternScan_TPP_ENZYMES"	-	no_errors
NOTCH3	4854	genome.wustl.edu	36	19	15137882	15137882	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15137882	15137882	G	T	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	missense	c.5383	p.L1795M	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH3	4854	genome.wustl.edu	36	19	15139142	15139142	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15139142	15139142	G	C	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	missense	c.5280	p.I1760M	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH3	4854	genome.wustl.edu	36	19	15142228	15142228	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15142228	15142228	G	A	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	silent	c.5028	p.F1676	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH3	4854	genome.wustl.edu	36	19	15142296	15142296	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15142296	15142296	G	A	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	silent	c.4960	p.L1654	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH3	4854	genome.wustl.edu	36	19	15159004	15159004	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15159004	15159004	G	A	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	silent	c.1752	p.D584	0.99	"HMMSmart_SM00179,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
BRD4	23476	genome.wustl.edu	36	19	15237429	15237429	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15237429	15237429	C	G	SNP	BRD4	NM_058243	human	genbank	54_36p	-1	reviewed	silent	c.585	p.T195	1	NULL	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
BRD4	23476	genome.wustl.edu	36	19	15240765	15240765	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15240765	15240765	C	T	SNP	BRD4	NM_058243	human	genbank	54_36p	-1	reviewed	missense	c.374	p.C125Y	1	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1"	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
AKAP8L	26993	genome.wustl.edu	36	19	15372127	15372127	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15372127	15372127	C	A	SNP	AKAP8L	NM_014371	human	genbank	54_36p	-1	validated	missense	c.1027	p.G343C	0.92	NULL	HMMPfam_AKAP95	-	no_errors
PGLYRP2	114770	genome.wustl.edu	36	19	15448150	15448150	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15448150	15448150	C	A	SNP	PGLYRP2	NM_052890	human	genbank	54_36p	-1	validated	missense	c.331	p.V111L	1	NULL	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	-	no_errors
CYP4F3	4051	genome.wustl.edu	36	19	15617570	15617570	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15617570	15617570	G	A	SNP	CYP4F3	NM_000896	human	genbank	54_36p	1	reviewed	silent	c.240	p.L80	0.99	"superfamily_Cytochrome_P450,HMMPfam_p450"	"superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4F3	4051	genome.wustl.edu	36	19	15621867	15621867	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15621867	15621867	C	T	SNP	CYP4F3	NM_000896	human	genbank	54_36p	1	reviewed	silent	c.792	p.H264	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4F12	66002	genome.wustl.edu	36	19	15654204	15654204	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15654204	15654204	G	T	SNP	CYP4F12	NM_023944	human	genbank	54_36p	1	reviewed	missense	c.531	p.K177N	1	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
OR10H5	284433	genome.wustl.edu	36	19	15765980	15765980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15765980	15765980	G	A	SNP	OR10H5	NM_001004466	human	genbank	54_36p	1	provisional	missense	c.122	p.G41D	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
CYP4F11	57834	genome.wustl.edu	36	19	15886127	15886127	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15886127	15886127	G	A	SNP	CYP4F11	NM_021187	human	genbank	54_36p	-1	reviewed	missense	c.1385	p.S462L	1	"superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	"superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
OR10H4	126541	genome.wustl.edu	36	19	15921303	15921303	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	15921303	15921303	G	A	SNP	OR10H4	NM_001004465	human	genbank	54_36p	1	validated	silent	c.486	p.T162	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
CIB3	117286	genome.wustl.edu	36	19	16136555	16136555	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16136555	16136555	C	T	SNP	CIB3	NM_054113	human	genbank	54_36p	-1	reviewed	missense	c.516	p.M172I	1	superfamily_EF-hand	"superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
AP1M1	8907	genome.wustl.edu	36	19	16175300	16175300	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16175300	16175300	G	A	SNP	AP1M1	NM_032493	human	genbank	54_36p	1	reviewed	missense	c.73	p.V25M	1	superfamily_SNARE-like	"superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_2"	-	no_errors
AP1M1	8907	genome.wustl.edu	36	19	16206060	16206060	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16206060	16206060	G	C	SNP	AP1M1	NM_032493	human	genbank	54_36p	1	reviewed	missense	c.1224	p.W408C	1	"HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor"	"HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2"	-	no_errors
EPS15L1	58513	genome.wustl.edu	36	19	16333718	16333718	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16333718	16333718	C	G	SNP	EPS15L1	NM_021235	human	genbank	54_36p	-1	provisional	missense	c.2458	p.D820H	1	NULL	"superfamily_SSF47473,HMMSmart_EH,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
EPS15L1	58513	genome.wustl.edu	36	19	16356995	16356995	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16356995	16356995	C	G	SNP	EPS15L1	NM_021235	human	genbank	54_36p	-1	provisional	missense	c.2192	p.G731A	1	NULL	"HMMSmart_EH,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473"	-	no_errors
CHERP	10523	genome.wustl.edu	36	19	16499986	16499986	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16499986	16499986	C	T	SNP	CHERP	NM_006387	human	genbank	54_36p	-1	validated	missense	c.1210	p.G404S	0.91	NULL	"superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,superfamily_ENTH/VHS domain,HMMPfam_DUF618,HMMSmart_SM00443,HMMPfam_G-patch"	-	no_errors
CHERP	10523	genome.wustl.edu	36	19	16502652	16502652	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16502652	16502652	C	A	SNP	CHERP	NM_006387	human	genbank	54_36p	-1	validated	missense	c.714	p.Q238H	1	"HMMPfam_DUF618,superfamily_ENTH/VHS domain"	"HMMPfam_Surp,HMMSmart_SM00648,HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_DUF618,superfamily_ENTH/VHS domain,superfamily_Surp module (SWAP domain Pfam 01805)"	-	no_errors
MED26	9441	genome.wustl.edu	36	19	16548873	16548873	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16548873	16548873	C	A	SNP	MED26	NM_004831	human	genbank	54_36p	-1	validated	silent	c.768	p.V256	0.02	NULL	"HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMSmart_SM00509"	-	no_errors
NWD1	284434	genome.wustl.edu	36	19	16721175	16721175	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	16721175	16721175	C	G	SNP	NWD1	NM_001007525	human	genbank	54_36p	1	validated	missense	c.317	p.T106S	0.02	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
MYO9B	4650	genome.wustl.edu	36	19	17144721	17144721	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17144721	17144721	G	C	SNP	MYO9B	NM_004145	human	genbank	54_36p	1	validated	missense	c.2089	p.V697L	1	"superfamily_SSF52540,HMMSmart_MYSc"	"HMMPfam_RA,HMMSmart_RA,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
USHBP1	83878	genome.wustl.edu	36	19	17228458	17228458	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17228458	17228458	C	T	SNP	USHBP1	NM_031941	human	genbank	54_36p	-1	validated	missense	c.1292	p.R431H	0.75	NULL	HMMPfam_MCC-bdg_PDZ	-	no_errors
C19orf62	29086	genome.wustl.edu	36	19	17243464	17243464	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17243464	17243464	G	T	SNP	C19orf62	NM_001033549	human	genbank	54_36p	1	validated	missense	c.344	p.G115V	1	NULL	NULL	-	no_errors
DDA1	79016	genome.wustl.edu	36	19	17286170	17286170	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17286170	17286170	G	T	SNP	DDA1	NM_024050	human	genbank	54_36p	1	validated	silent	c.108	p.L36	1	HMMPfam_DDA1	HMMPfam_DDA1	-	no_errors
ANO8	57719	genome.wustl.edu	36	19	17296902	17296902	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17296902	17296902	C	G	SNP	ANO8	NM_020959	human	genbank	54_36p	-1	provisional	missense	c.2955	p.Q985H	1	NULL	HMMPfam_DUF590	-	no_errors
ANO8	57719	genome.wustl.edu	36	19	17299567	17299567	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17299567	17299567	G	A	SNP	ANO8	NM_020959	human	genbank	54_36p	-1	provisional	silent	c.2349	p.D783	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
UNC13A	23025	genome.wustl.edu	36	19	17604933	17604933	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17604933	17604933	C	T	SNP	UNC13A	NM_001080421	human	genbank	54_36p	-1	provisional	missense	c.3549	p.M1183I	1	HMMPfam_DUF1041	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD"	-	no_errors
UNC13A	23025	genome.wustl.edu	36	19	17646509	17646509	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17646509	17646509	C	T	SNP	UNC13A	NM_001080421	human	genbank	54_36p	-1	provisional	missense	c.373	p.A125T	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_Cysteine-rich domain"	-	no_errors
JAK3	3718	genome.wustl.edu	36	19	17798626	17798626	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17798626	17798626	C	T	SNP	JAK3	NM_000215	human	genbank	54_36p	-1	reviewed	missense	c.3301	p.G1101R	0.02	superfamily_Protein kinase-like (PK-like)	"HMMSmart_SM00295,superfamily_SH2 domain,HMMSmart_SM00252,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_THIOL_PROTEASE_HIS,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
JAK3	3718	genome.wustl.edu	36	19	17807849	17807849	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17807849	17807849	G	A	SNP	JAK3	NM_000215	human	genbank	54_36p	-1	reviewed	nonsense	c.1798	p.Q600*	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMSmart_SM00295,superfamily_SH2 domain"	-	no_errors
KCNN1	3780	genome.wustl.edu	36	19	17961588	17961588	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	17961588	17961588	G	C	SNP	KCNN1	NM_002248	human	genbank	54_36p	1	reviewed	missense	c.1234	p.V412L	1	"superfamily_Small-conductance potassium channel,HMMPfam_CaMBD"	"HMMPfam_SK_channel,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_Small-conductance potassium channel,HMMPfam_CaMBD"	-	no_errors
MAST3	23031	genome.wustl.edu	36	19	18115610	18115610	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	18115610	18115610	T	A	SNP	MAST3	NM_015016	human	genbank	54_36p	1	validated	missense	c.2290	p.S764T	0.01	NULL	"PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
PDE4C	5143	genome.wustl.edu	36	19	18188666	18188666	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	18188666	18188666	A	G	SNP	PDE4C	NM_000923	human	genbank	54_36p	-1	validated	missense	c.1370	p.L457P	1	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I"	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
FKBP8	23770	genome.wustl.edu	36	19	18510133	18510133	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	18510133	18510133	G	C	SNP	FKBP8	NM_012181	human	genbank	54_36p	-1	reviewed	missense	c.665	p.A222G	1	"superfamily_SSF54534,superfamily_SSF48452"	"superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF48452,HMMPfam_TPR_1"	-	no_errors
TMEM59L	25789	genome.wustl.edu	36	19	18588888	18588888	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	18588888	18588888	C	A	SNP	TMEM59L	NM_012109	human	genbank	54_36p	1	reviewed	missense	c.640	p.P214T	0.53	NULL	NULL	-	no_errors
KLHL26	55295	genome.wustl.edu	36	19	18640040	18640040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	18640040	18640040	G	A	SNP	KLHL26	NM_018316	human	genbank	54_36p	1	provisional	missense	c.833	p.R278H	1	superfamily_Gal_oxid_central	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
COMP	1311	genome.wustl.edu	36	19	18762377	18762377	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	18762377	18762377	C	T	SNP	COMP	NM_000095	human	genbank	54_36p	-1	reviewed	missense	c.211	p.A71T	1	NULL	"PatternScan_EGF_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_SSF103647,HMMPfam_TSP_3,superfamily_ConA_like_lec_gl,HMMPfam_TSP_C"	-	no_errors
UPF1	5976	genome.wustl.edu	36	19	18824027	18824027	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	18824027	18824027	C	T	SNP	UPF1	NM_002911	human	genbank	54_36p	1	reviewed	silent	c.894	p.D298	1	NULL	"HMMPfam_UPF1_Zn_bind,superfamily_SSF52540,HMMPfam_ResIII"	-	no_errors
RFXANK	8625	genome.wustl.edu	36	19	19171021	19171021	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19171021	19171021	C	T	SNP	RFXANK	NM_003721	human	genbank	54_36p	1	reviewed	silent	c.690	p.A230	0.69	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
NCAN	1463	genome.wustl.edu	36	19	19196156	19196156	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19196156	19196156	G	A	SNP	NCAN	NM_004386	human	genbank	54_36p	1	validated	missense	c.692	p.R231H	1	"superfamily_C-type_lectin_fold,HMMSmart_LINK,HMMPfam_Xlink"	###############################################################################################################################################################################################################################################################	-	no_errors
NCAN	1463	genome.wustl.edu	36	19	19210115	19210115	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	19210115	19210115	T	A	SNP	NCAN	NM_004386	human	genbank	54_36p	1	validated	missense	c.3304	p.Y1102N	0.97	"HMMSmart_CLECT,superfamily_C-type_lectin_fold"	###############################################################################################################################################################################################################################################################	-	no_errors
BTBD2	55643	genome.wustl.edu	36	19	1948416	1948416	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	1948416	1948416	C	T	SNP	BTBD2	NM_017797	human	genbank	54_36p	-1	reviewed	missense	c.454	p.G152R	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,HMMPfam_PHR"	-	no_errors
PBX4	80714	genome.wustl.edu	36	19	19536835	19536835	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19536835	19536835	C	G	SNP	PBX4	NM_025245	human	genbank	54_36p	-1	reviewed	missense	c.832	p.E278Q	1	superfamily_Homeodomain-like	"HMMPfam_PBC,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
GMIP	51291	genome.wustl.edu	36	19	19606667	19606667	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19606667	19606667	C	T	SNP	GMIP	NM_016573	human	genbank	54_36p	-1	reviewed	silent	c.1821	p.A607	0.33	"superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	"HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
ATP13A1	57130	genome.wustl.edu	36	19	19617787	19617787	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19617787	19617787	G	A	SNP	ATP13A1	NM_020410	human	genbank	54_36p	-1	validated	nonsense	c.2902	p.Q968*	0.99	NULL	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660"	-	no_errors
ZNF101	94039	genome.wustl.edu	36	19	19651934	19651934	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19651934	19651934	G	T	SNP	ZNF101	NM_033204	human	genbank	54_36p	1	provisional	missense	c.1136	p.S379I	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF14	7561	genome.wustl.edu	36	19	19684201	19684201	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19684201	19684201	G	A	SNP	ZNF14	NM_021030	human	genbank	54_36p	-1	reviewed	missense	c.889	p.H297Y	0.55	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF682	91120	genome.wustl.edu	36	19	19978349	19978349	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	19978349	19978349	G	A	SNP	ZNF682	NM_033196	human	genbank	54_36p	-1	validated	missense	c.962	p.A321V	0.03	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF90	7643	genome.wustl.edu	36	19	20077091	20077091	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	20077091	20077091	T	A	SNP	ZNF90	ENST00000300996	human	ensembl	54_36p	1	known	silent	c.192	p.T64	0	HMMSmart_SM00349	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_stop_codon
LOC649299	649299	genome.wustl.edu	36	19	21208075	21208075	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	21208075	21208075	G	C	SNP	LOC649299	XM_001719759	human	genbank	54_36p	1	model	silent	c.99	p.L33	1	"superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44"	"superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44"	-	pseudogene
ZNF493	284443	genome.wustl.edu	36	19	21379800	21379800	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	21379800	21379800	A	G	SNP	ZNF493	NM_001076678	human	genbank	54_36p	1	validated	missense	c.60	p.I20M	0.99	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF493	284443	genome.wustl.edu	36	19	21399223	21399223	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	21399223	21399223	C	A	SNP	ZNF493	NM_001076678	human	genbank	54_36p	1	validated	missense	c.1922	p.S641Y	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF429	353088	genome.wustl.edu	36	19	21505300	21505300	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	21505300	21505300	G	C	SNP	ZNF429	NM_001001415	human	genbank	54_36p	1	provisional	missense	c.200	p.R67P	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF429	353088	genome.wustl.edu	36	19	21512311	21512311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	21512311	21512311	G	A	SNP	ZNF429	NM_001001415	human	genbank	54_36p	1	provisional	missense	c.1616	p.C539Y	0.03	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF208	7757	genome.wustl.edu	36	19	21946919	21946919	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	21946919	21946919	A	G	SNP	ZNF208	NM_007153	human	genbank	54_36p	-1	provisional	missense	c.2459	p.V820A	0.05	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF208	7757	genome.wustl.edu	36	19	21948914	21948914	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	21948914	21948914	C	A	SNP	ZNF208	NM_007153	human	genbank	54_36p	-1	provisional	missense	c.762	p.E254D	0	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF98	148198	genome.wustl.edu	36	19	22366456	22366456	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	22366456	22366456	G	A	SNP	ZNF98	NM_001098626	human	genbank	54_36p	-1	validated	missense	c.1421	p.S474F	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF492	57615	genome.wustl.edu	36	19	22609118	22609118	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	22609118	22609118	T	A	SNP	ZNF492	NM_020855	human	genbank	54_36p	1	validated	splice_site	c.1+2	e0+2	0	-	-	-	no_errors
LOC646864	646864	genome.wustl.edu	36	19	22832529	22832529	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	22832529	22832529	G	A	SNP	LOC646864	XM_001726885	human	genbank	54_36p	1	model	silent	c.1083	p.K361	0.33	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC646864	646864	genome.wustl.edu	36	19	22832856	22832856	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	22832856	22832856	T	G	SNP	LOC646864	XM_001726885	human	genbank	54_36p	1	model	silent	c.1410	p.T470	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF724P	440519	genome.wustl.edu	36	19	23197370	23197370	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	23197370	23197370	T	C	SNP	ZNF724P	ENST00000397097	human	ensembl	54_36p	-1	known	missense	c.1181	p.Y394C	0.11	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_start_codon:no_stop_codon
ZNF724P	440519	genome.wustl.edu	36	19	23197718	23197718	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	23197718	23197718	C	G	SNP	ZNF724P	ENST00000397097	human	ensembl	54_36p	-1	known	missense	c.833	p.G278A	1	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_start_codon:no_stop_codon
ZNF91	7644	genome.wustl.edu	36	19	23334796	23334796	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	23334796	23334796	T	G	SNP	ZNF91	NM_003430	human	genbank	54_36p	-1	validated	missense	c.2825	p.E942A	0.04	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	-	no_errors
ZNF91	7644	genome.wustl.edu	36	19	23337109	23337109	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	23337109	23337109	C	G	SNP	ZNF91	NM_003430	human	genbank	54_36p	-1	validated	missense	c.512	p.R171T	0.08	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF675	171392	genome.wustl.edu	36	19	23628887	23628887	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	19	23628887	23628887	A	G	SNP	ZNF675	NM_138330	human	genbank	54_36p	-1	validated	missense	c.688	p.C230R	0.11	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
THOP1	7064	genome.wustl.edu	36	19	2745857	2745857	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	2745857	2745857	G	A	SNP	THOP1	NM_003249	human	genbank	54_36p	1	provisional	missense	c.325	p.D109N	1	superfamily_SSF55486	"superfamily_SSF55486,HMMPfam_Peptidase_M3,PatternScan_ZINC_PROTEASE"	-	no_errors
THOP1	7064	genome.wustl.edu	36	19	2750744	2750744	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	2750744	2750744	C	A	SNP	THOP1	NM_003249	human	genbank	54_36p	1	provisional	missense	c.544	p.L182M	1	superfamily_SSF55486	"HMMPfam_Peptidase_M3,PatternScan_ZINC_PROTEASE,superfamily_SSF55486"	-	no_errors
TLE6	79816	genome.wustl.edu	36	19	2942957	2942957	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	2942957	2942957	C	A	SNP	TLE6	NM_024760	human	genbank	54_36p	1	validated	missense	c.992	p.P331H	0.19	superfamily_WD40_like	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40"	-	no_errors
CELF5	60680	genome.wustl.edu	36	19	3233187	3233187	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	3233187	3233187	T	C	SNP	BRUNOL5	NM_021938	human	genbank	54_36p	1	reviewed	missense	c.814	p.F272L	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
LOC727865	727865	genome.wustl.edu	36	19	35139406	35139406	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	35139406	35139406	A	T	SNP	LOC727865	XR_015160	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
C19orf2	8725	genome.wustl.edu	36	19	35193895	35193895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	35193895	35193895	G	A	SNP	C19orf2	NM_003796	human	genbank	54_36p	1	reviewed	missense	c.1090	p.E364K	1	NULL	"superfamily_Prefoldin,HMMPfam_Prefoldin"	-	no_errors
ZNF536	9745	genome.wustl.edu	36	19	35626475	35626475	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	35626475	35626475	C	G	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	missense	c.166	p.P56A	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF536	9745	genome.wustl.edu	36	19	35628128	35628128	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	35628128	35628128	T	A	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	missense	c.1819	p.F607I	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF536	9745	genome.wustl.edu	36	19	35730727	35730727	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	35730727	35730727	C	T	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	silent	c.2361	p.A787	0.97	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
TSHZ3	57616	genome.wustl.edu	36	19	36459884	36459884	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	36459884	36459884	C	T	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	silent	c.2655	p.S885	0.96	superfamily_Homeodomain_like	"PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
TSHZ3	57616	genome.wustl.edu	36	19	36461226	36461226	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	36461226	36461226	A	G	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	missense	c.1313	p.L438P	0.98	NULL	"HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1"	-	no_errors
TSHZ3	57616	genome.wustl.edu	36	19	36461918	36461918	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	36461918	36461918	G	A	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	silent	c.621	p.I207	1	NULL	"HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1"	-	no_errors
DPY19L3	147991	genome.wustl.edu	36	19	37664893	37664893	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	37664893	37664893	G	A	SNP	DPY19L3	NM_207325	human	genbank	54_36p	1	provisional	silent	c.2058	p.E686	1	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
ANKRD27	84079	genome.wustl.edu	36	19	37788636	37788636	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	37788636	37788636	G	A	SNP	ANKRD27	NM_032139	human	genbank	54_36p	-1	validated	missense	c.2438	p.P813L	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKRD27	84079	genome.wustl.edu	36	19	37814173	37814173	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	37814173	37814173	G	A	SNP	ANKRD27	NM_032139	human	genbank	54_36p	-1	validated	missense	c.1184	p.S395L	0.96	superfamily_ANK	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993"	-	no_errors
CCDC123	84902	genome.wustl.edu	36	19	38114236	38114236	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	38114236	38114236	T	A	SNP	CCDC123	NM_032816	human	genbank	54_36p	-1	validated	missense	c.968	p.H323L	1	NULL	NULL	-	no_errors
CCDC123	84902	genome.wustl.edu	36	19	38116210	38116210	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	38116210	38116210	C	T	SNP	CCDC123	NM_032816	human	genbank	54_36p	-1	validated	silent	c.873	p.A291	0	NULL	NULL	-	no_errors
UBA2	10054	genome.wustl.edu	36	19	39641513	39641513	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	39641513	39641513	G	T	SNP	UBA2	NM_005499	human	genbank	54_36p	1	validated	splice_site	c.1246-1	e13-1	1	-	-	-	no_errors
ZNF599	148103	genome.wustl.edu	36	19	39941846	39941846	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	39941846	39941846	T	C	SNP	ZNF599	NM_001007248	human	genbank	54_36p	-1	validated	missense	c.1700	p.E567G	0.24	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FAM187B	148109	genome.wustl.edu	36	19	40411150	40411150	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40411150	40411150	G	A	SNP	FAM187B	NM_152481	human	genbank	54_36p	-1	provisional	missense	c.274	p.L92F	0	NULL	NULL	-	no_errors
FAM187B	148109	genome.wustl.edu	36	19	40411274	40411274	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40411274	40411274	G	T	SNP	FAM187B	NM_152481	human	genbank	54_36p	-1	provisional	missense	c.150	p.H50Q	0	NULL	NULL	-	no_errors
FFAR3	2865	genome.wustl.edu	36	19	40541728	40541728	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	40541728	40541728	C	T	SNP	FFAR3	NM_005304	human	genbank	54_36p	1	validated	silent	c.96	p.N32	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
COX6B1	1340	genome.wustl.edu	36	19	40831626	40831626	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40831626	40831626	C	T	SNP	COX6B1	ENST00000392201	human	ensembl	54_36p	1	known	nonsense	c.16	p.Q6*	0	NULL	"superfamily_Cytochrome c oxidase subunit h,HMMPfam_COX6B"	-	no_errors
ZBTB32	27033	genome.wustl.edu	36	19	40899342	40899342	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40899342	40899342	C	A	SNP	ZBTB32	NM_014383	human	genbank	54_36p	1	provisional	missense	c.1312	p.P438T	1	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MLL4	9757	genome.wustl.edu	36	19	40915407	40915407	+	Nonstop_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40915407	40915407	G	T	SNP	MLL4	NM_014727	human	genbank	54_36p	1	reviewed	nonstop	c.6116	p.*2039L	1	NULL	"HMMPfam_AT_hook,HMMPfam_zf-CXXC"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PSENEN	55851	genome.wustl.edu	36	19	40929526	40929526	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40929526	40929526	C	T	SNP	PSENEN	NM_172341	human	genbank	54_36p	1	reviewed	missense	c.244	p.R82W	1	HMMPfam_PEN-2	HMMPfam_PEN-2	-	no_errors
ARHGAP33	115703	genome.wustl.edu	36	19	40969697	40969697	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40969697	40969697	G	A	SNP	SNX26	NM_052948	human	genbank	54_36p	1	reviewed	missense	c.2002	p.G668S	0.12	NULL	"superfamily_PX,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
PRODH2	58510	genome.wustl.edu	36	19	40982818	40982818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	40982818	40982818	G	A	SNP	PRODH2	NM_021232	human	genbank	54_36p	-1	reviewed	missense	c.1573	p.R525W	0	superfamily_SSF51730	"HMMPfam_Pro_dh,superfamily_SSF51730"	-	no_errors
NPHS1	4868	genome.wustl.edu	36	19	41025292	41025292	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	41025292	41025292	C	A	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	nonsense	c.2335	p.G779*	0.75	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
NPHS1	4868	genome.wustl.edu	36	19	41026974	41026974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	41026974	41026974	G	A	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	missense	c.2083	p.R695W	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
KIRREL2	84063	genome.wustl.edu	36	19	41043070	41043070	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	41043070	41043070	A	G	SNP	KIRREL2	NM_199180	human	genbank	54_36p	1	validated	silent	c.705	p.P235	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set"	-	no_errors
APLP1	333	genome.wustl.edu	36	19	41061889	41061889	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	41061889	41061889	T	A	SNP	APLP1	NM_001024807	human	genbank	54_36p	1	reviewed	missense	c.1787	p.L596H	0.95	HMMPfam_APP_amyloid	###############################################################################################################################################################################################################################################################	-	no_errors
CREB3L3	84699	genome.wustl.edu	36	19	4108240	4108240	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	4108240	4108240	A	G	SNP	CREB3L3	NM_032607	human	genbank	54_36p	1	provisional	silent	c.405	p.T135	0	NULL	"superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
CLIP3	25999	genome.wustl.edu	36	19	41200644	41200644	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	41200644	41200644	C	T	SNP	CLIP3	NM_015526	human	genbank	54_36p	-1	provisional	missense	c.1273	p.A425T	1	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
ZNF461	92283	genome.wustl.edu	36	19	41821987	41821987	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	41821987	41821987	C	A	SNP	ZNF461	NM_153257	human	genbank	54_36p	-1	validated	missense	c.1100	p.R367M	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF345	25850	genome.wustl.edu	36	19	42059828	42059828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	42059828	42059828	G	A	SNP	ZNF345	NM_003419	human	genbank	54_36p	1	provisional	missense	c.256	p.G86S	1	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF568	374900	genome.wustl.edu	36	19	42132392	42132392	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	42132392	42132392	C	A	SNP	ZNF568	NM_198539	human	genbank	54_36p	1	validated	nonsense	c.497	p.S166*	0	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF585A	199704	genome.wustl.edu	36	19	42335087	42335087	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	42335087	42335087	C	T	SNP	ZNF585A	NM_152655	human	genbank	54_36p	-1	validated	silent	c.1389	p.G463	0.96	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF527	84503	genome.wustl.edu	36	19	42571282	42571289	+	Frame_Shift_Del	DEL	AATTTAGT	AATTTAGT	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	AATTTAGT	AATTTAGT	AATTTAGT	-	AATTTAGT	AATTTAGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	42571282	42571289	AATTTAGT	-	DEL	ZNF527	NM_032453	human	genbank	54_36p	1	validated	frame_shift_del	c.491_498	p.S166fs	0.016:0.011:0.015:0.000:0.000:0.000:0.000:0.000	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[42571048,42572621])"	no_errors
SH3GL1	6455	genome.wustl.edu	36	19	4313368	4313368	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	A	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	19	4313368	4313368	G	A	SNP	SH3GL1	NM_003025	human	genbank	54_36p	-1	provisional	nonsense	c.868	p.R290*	1	NULL	"HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
SIPA1L3	23094	genome.wustl.edu	36	19	43302101	43302101	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	43302101	43302101	G	A	SNP	SIPA1L3	NM_015073	human	genbank	54_36p	1	validated	silent	c.2607	p.G869	0.99	NULL	"superfamily_SSF111347,HMMPfam_Rap_GAP,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43616323	43616323	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	43616323	43616323	A	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.14	p.E5V	1	NULL	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43690218	43690218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	43690218	43690218	C	G	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.8843	p.S2948W	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR1	6261	genome.wustl.edu	36	19	43767482	43767482	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	43767482	43767482	C	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	silent	c.14706	p.I4902	0.96	HMMPfam_Ion_trans	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
EIF3K	27335	genome.wustl.edu	36	19	43801800	43801800	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	43801800	43801800	A	G	SNP	EIF3K	NM_013234	human	genbank	54_36p	1	validated	missense	c.52	p.I18V	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_SAC3_GANP,superfamily_Winged helix DNA-binding domain"	-	no_errors
HNRNPL	3191	genome.wustl.edu	36	19	44029855	44029855	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	44029855	44029855	C	A	SNP	HNRNPL	NM_001533	human	genbank	54_36p	-1	reviewed	silent	c.327	p.L109	1	"superfamily_SSF54928,HMMSmart_RRM"	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
PAK4	10298	genome.wustl.edu	36	19	44360981	44360981	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	44360981	44360981	G	A	SNP	PAK4	NM_001014831	human	genbank	54_36p	1	reviewed	silent	c.1698	p.L566	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"HMMPfam_PBD,HMMSmart_SM00285,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
LRFN1	57622	genome.wustl.edu	36	19	44496453	44496453	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	44496453	44496453	T	C	SNP	LRFN1	NM_020862	human	genbank	54_36p	-1	validated	missense	c.1364	p.Q455R	1	"HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like"	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like"	-	no_errors
MED29	55588	genome.wustl.edu	36	19	44574065	44574065	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	44574065	44574065	G	C	SNP	MED29	NM_017592	human	genbank	54_36p	1	provisional	missense	c.226	p.D76H	1	NULL	NULL	-	no_errors
PLIN4	729359	genome.wustl.edu	36	19	4462818	4462818	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	4462818	4462818	A	G	SNP	KIAA1881	NM_001080400	human	genbank	54_36p	-1	provisional	silent	c.2112	p.S704	0	NULL	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors
SUPT5H	6829	genome.wustl.edu	36	19	44651282	44651282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	44651282	44651282	G	C	SNP	SUPT5H	NM_003169	human	genbank	54_36p	1	validated	missense	c.1084	p.E362Q	1	NULL	"HMMPfam_Supt5,HMMSmart_SM00738,HMMSmart_SM00739,superfamily_Translation proteins SH3-like domain,HMMPfam_KOW"	-	no_errors
SUPT5H	6829	genome.wustl.edu	36	19	44651750	44651750	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	44651750	44651750	C	T	SNP	SUPT5H	NM_003169	human	genbank	54_36p	1	validated	missense	c.1246	p.R416W	1	superfamily_Translation proteins SH3-like domain	"HMMPfam_Supt5,HMMPfam_KOW,HMMSmart_SM00739,HMMSmart_SM00738,superfamily_Translation proteins SH3-like domain"	-	no_errors
LRG1	116844	genome.wustl.edu	36	19	4489173	4489173	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	4489173	4489173	C	T	SNP	LRG1	NM_052972	human	genbank	54_36p	-1	validated	missense	c.823	p.V275M	0	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1"	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT"	-	no_errors
LGALS14	56891	genome.wustl.edu	36	19	44891741	44891741	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	44891741	44891741	T	C	SNP	LGALS14	NM_203471	human	genbank	54_36p	1	reviewed	missense	c.455	p.M152T	0	"superfamily_ConA_like_lec_gl,HMMPfam_Gal-bind_lectin,HMMSmart_GLECT"	"superfamily_ConA_like_lec_gl,HMMPfam_Gal-bind_lectin,HMMSmart_GLECT"	-	no_errors
DYRK1B	9149	genome.wustl.edu	36	19	45013171	45013171	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	45013171	45013171	G	A	SNP	DYRK1B	NM_004714	human	genbank	54_36p	-1	reviewed	silent	c.156	p.L52	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45046321	45046321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	45046321	45046321	C	T	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.15988	p.V5330M	0.01	"HMMSmart_VWD,HMMPfam_VWD"	"HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC"	-	no_errors
FCGBP	8857	genome.wustl.edu	36	19	45125384	45125384	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	45125384	45125384	A	G	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.725	p.L242P	1	NULL	"HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
SHKBP1	92799	genome.wustl.edu	36	19	45781214	45781214	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	45781214	45781214	G	C	SNP	SHKBP1	NM_138392	human	genbank	54_36p	1	validated	missense	c.1031	p.G344A	1	superfamily_WD40 repeat-like	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1"	-	no_errors
LTBP4	8425	genome.wustl.edu	36	19	45807382	45807382	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	45807382	45807382	C	G	SNP	LTBP4	ENST00000308370	human	ensembl	54_36p	1	known	silent	c.1734	p.L578	1	"HMMSmart_EGF,HMMPfam_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2"	"superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,superfamily_Fibril-assoc,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Grow_fac_recept"	-	no_errors
NUMBL	9253	genome.wustl.edu	36	19	45880683	45880683	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	45880683	45880683	G	A	SNP	NUMBL	NM_004756	human	genbank	54_36p	-1	validated	missense	c.280	p.R94W	1	"superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID"	"superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,HMMPfam_NumbF"	-	no_errors
SNRPA	6626	genome.wustl.edu	36	19	45957227	45957227	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	45957227	45957227	A	G	SNP	SNRPA	NM_004596	human	genbank	54_36p	1	provisional	missense	c.298	p.T100A	1	superfamily_SSF54928	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
CYP2A6	1548	genome.wustl.edu	36	19	46048154	46048154	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46048154	46048154	C	T	SNP	CYP2A6	NM_000762	human	genbank	54_36p	-1	reviewed	missense	c.18	p.M6I	0.06	NULL	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2B7P1	1556	genome.wustl.edu	36	19	46139063	46139063	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46139063	46139063	T	C	SNP	CYP2B7P1	ENST00000330446	human	ensembl	54_36p	1	known	missense	c.668	p.F223S	0.29	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450"	-	no_errors
CYP2B6	1555	genome.wustl.edu	36	19	46210210	46210210	+	Nonsense_Mutation	SNP	C	C	T	rs34097093	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	19	46210210	46210210	C	T	SNP	CYP2B6	NM_000767	human	genbank	54_36p	1	reviewed	nonsense	c.1132	p.R378*	0.81	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2F1	1572	genome.wustl.edu	36	19	46319722	46319722	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	46319722	46319722	C	T	SNP	CYP2F1	NM_000774	human	genbank	54_36p	1	reviewed	silent	c.666	p.S222	0	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
B9D2	80776	genome.wustl.edu	36	19	46555746	46555746	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46555746	46555746	G	T	SNP	B9D2	NM_030578	human	genbank	54_36p	-1	provisional	nonsense	c.110	p.S37*	0.98	HMMPfam_B9	HMMPfam_B9	-	no_errors
CEACAM21	90273	genome.wustl.edu	36	19	46777611	46777611	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46777611	46777611	C	A	SNP	CEACAM21	NM_001098506	human	genbank	54_36p	1	validated	missense	c.490	p.L164M	0.05	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
CEACAM7	1087	genome.wustl.edu	36	19	46882638	46882638	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46882638	46882638	T	C	SNP	CEACAM7	NM_006890	human	genbank	54_36p	-1	provisional	missense	c.419	p.Y140C	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
CEACAM6	4680	genome.wustl.edu	36	19	46957130	46957130	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46957130	46957130	G	A	SNP	CEACAM6	NM_002483	human	genbank	54_36p	1	validated	silent	c.558	p.P186	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
ARHGEF1	9138	genome.wustl.edu	36	19	47084732	47084732	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	47084732	47084732	G	A	SNP	ARHGEF1	NM_199002	human	genbank	54_36p	1	reviewed	missense	c.226	p.A76T	1	"HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam"	"HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
ARHGEF1	9138	genome.wustl.edu	36	19	47090170	47090170	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	47090170	47090170	G	A	SNP	ARHGEF1	NM_199002	human	genbank	54_36p	1	reviewed	missense	c.740	p.R247Q	0.99	"HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam"	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729"	-	no_errors
GRIK5	2901	genome.wustl.edu	36	19	47261337	47261337	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	47261337	47261337	C	T	SNP	GRIK5	NM_002088	human	genbank	54_36p	-1	reviewed	missense	c.122	p.R41H	1	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
CIC	23152	genome.wustl.edu	36	19	47486971	47486971	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	47486971	47486971	C	A	SNP	CIC	NM_015125	human	genbank	54_36p	1	validated	silent	c.2211	p.A737	1	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
CIC	23152	genome.wustl.edu	36	19	47488302	47488314	+	Frame_Shift_Del	DEL	GTGCAGTCAGCGG	GTGCAGTCAGCGG	-	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	GTGCAGTCAGCGG	GTGCAGTCAGCGG	GTGCAGTCAGCGG	-	GTGCAGTCAGCGG	GTGCAGTCAGCGG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	47488302	47488314	GTGCAGTCAGCGG	-	DEL	CIC	NM_015125	human	genbank	54_36p	1	validated	frame_shift_del	c.3019_3031	p.V1007fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.998:0.974:0.690:0.757	NULL	"HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box"	"(deletion:cds_exon[47488292,47488458])"	no_errors
PSG3	5671	genome.wustl.edu	36	19	47929004	47929004	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	47929004	47929004	C	T	SNP	PSG3	NM_021016	human	genbank	54_36p	-1	validated	missense	c.481	p.D161N	0	"superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2"	-	no_errors
PSG1	5669	genome.wustl.edu	36	19	48068034	48068034	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	48068034	48068034	T	C	SNP	PSG1	NM_006905	human	genbank	54_36p	-1	provisional	missense	c.434	p.E145G	0.02	"HMMSmart_SM00409,superfamily_Immunoglobulin"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
PSG6	5675	genome.wustl.edu	36	19	48103123	48103123	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	48103123	48103123	C	T	SNP	PSG6	NM_002782	human	genbank	54_36p	-1	provisional	missense	c.1031	p.R344H	0.01	"superfamily_SSF48726,HMMSmart_IGc2"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2"	-	no_errors
PSG7	5676	genome.wustl.edu	36	19	48121803	48121803	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	48121803	48121803	C	A	SNP	PSG7	NM_002783	human	genbank	54_36p	-1	reviewed	missense	c.1205	p.G402V	0.01	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	pseudogene
PSG11	5680	genome.wustl.edu	36	19	48211161	48211161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	48211161	48211161	C	T	SNP	PSG11	NM_002785	human	genbank	54_36p	-1	validated	missense	c.911	p.R304H	0.26	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
PHLDB3	653583	genome.wustl.edu	36	19	48682628	48682628	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	48682628	48682628	C	T	SNP	PHLDB3	NM_198850	human	genbank	54_36p	-1	validated	silent	c.1401	p.A467	0.48	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
XRCC1	7515	genome.wustl.edu	36	19	48748875	48748875	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	48748875	48748875	C	G	SNP	XRCC1	NM_006297	human	genbank	54_36p	-1	reviewed	missense	c.737	p.R246T	1	NULL	"HMMPfam_XRCC1_N,superfamily_Galactose-binding domain-like,superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292"	-	no_errors
IRGQ	126298	genome.wustl.edu	36	19	48791007	48791007	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	48791007	48791007	G	A	SNP	IRGQ	NM_001007561	human	genbank	54_36p	-1	validated	silent	c.324	p.T108	0.96	NULL	NULL	-	no_errors
IRGC	56269	genome.wustl.edu	36	19	48914940	48914940	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	48914940	48914940	C	A	SNP	IRGC	NM_019612	human	genbank	54_36p	1	validated	missense	c.390	p.D130E	0.01	"superfamily_SSF52540,HMMPfam_IIGP"	"superfamily_SSF52540,HMMPfam_IIGP"	-	no_errors
ZNF45	7596	genome.wustl.edu	36	19	49114870	49114870	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49114870	49114870	T	C	SNP	ZNF45	NM_003425	human	genbank	54_36p	-1	provisional	missense	c.227	p.N76S	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF222	7673	genome.wustl.edu	36	19	49227919	49227919	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49227919	49227919	A	C	SNP	ZNF222	NM_013360	human	genbank	54_36p	1	validated	missense	c.252	p.Q84H	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF224	7767	genome.wustl.edu	36	19	49303508	49303508	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49303508	49303508	G	T	SNP	ZNF224	NM_013398	human	genbank	54_36p	1	provisional	missense	c.1355	p.G452V	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF285	26974	genome.wustl.edu	36	19	49588406	49588406	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49588406	49588406	T	C	SNP	ZNF285A	NM_152354	human	genbank	54_36p	-1	validated	missense	c.80	p.K27R	0	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF229	7772	genome.wustl.edu	36	19	49626013	49626013	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49626013	49626013	T	C	SNP	ZNF229	NM_014518	human	genbank	54_36p	-1	validated	silent	c.783	p.G261	0	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF285B	147711	genome.wustl.edu	36	19	49668632	49668632	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49668632	49668632	A	C	SNP	ZNF285B	XR_016906	human	genbank	54_36p	1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
ZNF285B	147711	genome.wustl.edu	36	19	49669022	49669022	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49669022	49669022	A	G	SNP	ZNF285B	XR_016906	human	genbank	54_36p	1	model	rna	NULL	NULL	0.34	-	-	-	pseudogene
ZNF285B	147711	genome.wustl.edu	36	19	49669048	49669048	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49669048	49669048	T	C	SNP	ZNF285B	XR_016906	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
CEACAM16	388551	genome.wustl.edu	36	19	49894554	49894554	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49894554	49894554	G	C	SNP	CEACAM16	NM_001039213	human	genbank	54_36p	1	provisional	missense	c.165	p.L55F	1	NULL	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2"	-	no_errors
BCL3	602	genome.wustl.edu	36	19	49951375	49951375	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49951375	49951375	C	T	SNP	BCL3	NM_005178	human	genbank	54_36p	1	reviewed	missense	c.433	p.R145W	0.08	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
CBLC	23624	genome.wustl.edu	36	19	49988631	49988631	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	49988631	49988631	A	-	DEL	CBLC	NM_012116	human	genbank	54_36p	1	validated	frame_shift_del	c.1198	p.S400fs	0.98	superfamily_RING/U-box	"HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	"(deletion:cds_exon[49988571,49988717])"	no_errors
CLPTM1	1209	genome.wustl.edu	36	19	50169634	50169634	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	50169634	50169634	G	T	SNP	CLPTM1	NM_001294	human	genbank	54_36p	1	provisional	missense	c.408	p.W136C	1	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors
RELB	5971	genome.wustl.edu	36	19	50227756	50227756	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	50227756	50227756	C	G	SNP	RELB	NM_006509	human	genbank	54_36p	1	validated	silent	c.1116	p.V372	0	"superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD,PatternScan_REL_1,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	-	no_errors
RELB	5971	genome.wustl.edu	36	19	50229366	50229366	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	50229366	50229366	G	A	SNP	RELB	NM_006509	human	genbank	54_36p	1	validated	missense	c.1232	p.R411Q	1	superfamily_Ig_E-set	"PatternScan_REL_1,HMMPfam_TIG,HMMSmart_IPT,superfamily_P53_like_DNA_bnd,HMMPfam_RHD,superfamily_Ig_E-set"	-	no_errors
FOSB	2354	genome.wustl.edu	36	19	50665942	50665942	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	50665942	50665942	T	G	SNP	FOSB	NM_006732	human	genbank	54_36p	1	reviewed	missense	c.342	p.S114R	1	NULL	"PatternScan_SUBTILASE_SER,HMMSmart_SM00338,HMMPfam_bZIP_2,PatternScan_BZIP_BASIC"	-	no_errors
RTN2	6253	genome.wustl.edu	36	19	50684493	50684493	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	50684493	50684493	G	A	SNP	RTN2	NM_005619	human	genbank	54_36p	-1	reviewed	missense	c.1192	p.R398C	1	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
EML2	24139	genome.wustl.edu	36	19	50808770	50808770	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	50808770	50808770	C	T	SNP	EML2	NM_012155	human	genbank	54_36p	-1	provisional	splice_site	c.1694-1	e18-1	1	-	-	-	no_errors
SIX5	147912	genome.wustl.edu	36	19	50963225	50963225	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	50963225	50963225	G	A	SNP	SIX5	NM_175875	human	genbank	54_36p	-1	validated	silent	c.718	p.L240	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
RSPH6A	81492	genome.wustl.edu	36	19	50995594	50995594	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	50995594	50995594	G	C	SNP	RSHL1	NM_030785	human	genbank	54_36p	-1	reviewed	silent	c.1866	p.A622	0.14	HMMPfam_Radial_spoke	HMMPfam_Radial_spoke	-	no_errors
CCDC61	729440	genome.wustl.edu	36	19	51201717	51201717	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	51201717	51201717	C	A	SNP	CCDC61	NM_001080402	human	genbank	54_36p	1	provisional	missense	c.463	p.R155S	1	NULL	NULL	-	no_errors
CCDC8	83987	genome.wustl.edu	36	19	51607209	51607209	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	51607209	51607209	G	A	SNP	CCDC8	NM_032040	human	genbank	54_36p	-1	validated	silent	c.699	p.S233	0	NULL	NULL	-	no_errors
CCDC8	83987	genome.wustl.edu	36	19	51607719	51607719	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	51607719	51607719	G	A	SNP	CCDC8	NM_032040	human	genbank	54_36p	-1	validated	silent	c.189	p.T63	1	NULL	NULL	-	no_errors
GRLF1	2909	genome.wustl.edu	36	19	52116027	52116027	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52116027	52116027	G	T	SNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	missense	c.2255	p.S752I	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
SAE1	10055	genome.wustl.edu	36	19	52364991	52364991	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52364991	52364991	G	A	SNP	SAE1	NM_005500	human	genbank	54_36p	1	validated	missense	c.704	p.R235H	0.99	superfamily_Activating enzymes of the ubiquitin-like proteins	"superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF"	-	no_errors
C5AR1	728	genome.wustl.edu	36	19	52514960	52514960	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52514960	52514960	C	T	SNP	C5AR1	NM_001736	human	genbank	54_36p	1	validated	missense	c.86	p.T29I	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
C5AR1	728	genome.wustl.edu	36	19	52515843	52515843	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52515843	52515843	G	T	SNP	C5AR1	NM_001736	human	genbank	54_36p	1	validated	missense	c.969	p.L323F	0.02	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
GPR77	27202	genome.wustl.edu	36	19	52536795	52536795	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52536795	52536795	G	T	SNP	GPR77	NM_018485	human	genbank	54_36p	1	provisional	missense	c.899	p.R300L	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
DHX34	9704	genome.wustl.edu	36	19	52548654	52548654	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52548654	52548654	A	C	SNP	DHX34	NM_014681	human	genbank	54_36p	1	reviewed	missense	c.527	p.K176T	0	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605,PatternScan_RUBREDOXIN"	-	no_errors
DHX34	9704	genome.wustl.edu	36	19	52553216	52553216	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52553216	52553216	G	C	SNP	DHX34	NM_014681	human	genbank	54_36p	1	reviewed	splice_site	c.1272+1	e3+1	1	-	-	-	no_errors
EHD2	30846	genome.wustl.edu	36	19	52935970	52935970	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	52935970	52935970	C	G	SNP	EHD2	NM_014601	human	genbank	54_36p	1	reviewed	missense	c.1101	p.D367E	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1"	-	no_errors
SULT2A1	6822	genome.wustl.edu	36	19	53078738	53078738	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	53078738	53078738	T	C	SNP	SULT2A1	NM_003167	human	genbank	54_36p	-1	validated	missense	c.253	p.T85A	0	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
PLA2G4C	8605	genome.wustl.edu	36	19	53294818	53294818	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	53294818	53294818	G	T	SNP	PLA2G4C	NM_003706	human	genbank	54_36p	-1	provisional	silent	c.369	p.T123	0.25	"HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase"	"HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase,HMMPfam_PLA2_B"	-	no_errors
CCDC114	93233	genome.wustl.edu	36	19	53493149	53493149	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	53493149	53493149	G	A	SNP	CCDC114	NM_144577	human	genbank	54_36p	-1	validated	silent	c.690	p.A230	0	NULL	NULL	-	no_errors
GRIN2D	2906	genome.wustl.edu	36	19	53614428	53614428	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	53614428	53614428	C	T	SNP	GRIN2D	NM_000836	human	genbank	54_36p	1	reviewed	missense	c.1861	p.R621C	1	"superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan"	"superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
MAMSTR	284358	genome.wustl.edu	36	19	53908385	53908385	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	53908385	53908385	G	A	SNP	FLJ36070	NM_182574	human	genbank	54_36p	-1	validated	missense	c.890	p.S297F	0.97	NULL	"superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	-	no_errors
IZUMO1	284359	genome.wustl.edu	36	19	53936883	53936883	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	53936883	53936883	G	C	SNP	IZUMO1	NM_182575	human	genbank	54_36p	-1	validated	silent	c.729	p.A243	0.55	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
BCAT2	587	genome.wustl.edu	36	19	54001641	54001641	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	54001641	54001641	G	T	SNP	BCAT2	NM_001190	human	genbank	54_36p	-1	validated	missense	c.245	p.P82H	1	superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes	"superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes,HMMPfam_Aminotran_4,PatternScan_AA_TRANSFER_CLASS_4"	-	no_errors
CGB5	93659	genome.wustl.edu	36	19	54240166	54240166	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	54240166	54240166	T	C	SNP	CGB5	NM_033043	human	genbank	54_36p	1	reviewed	missense	c.301	p.S101P	1	"superfamily_Cystine-knot cytokines,HMMSmart_SM00068,HMMPfam_Cys_knot"	"superfamily_Cystine-knot cytokines,HMMSmart_SM00068,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2"	-	no_errors
TRPM4	54795	genome.wustl.edu	36	19	54384063	54384063	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	54384063	54384063	T	C	SNP	TRPM4	NM_017636	human	genbank	54_36p	1	provisional	missense	c.1922	p.L641P	0.45	NULL	HMMPfam_Ion_trans	-	no_errors
SLC6A16	28968	genome.wustl.edu	36	19	54504404	54504404	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	54504404	54504404	G	A	SNP	SLC6A16	NM_014037	human	genbank	54_36p	-1	validated	missense	c.953	p.A318V	0.01	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLC17A7	57030	genome.wustl.edu	36	19	54629855	54629855	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	54629855	54629855	G	A	SNP	SLC17A7	NM_020309	human	genbank	54_36p	-1	reviewed	silent	c.531	p.I177	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
RCN3	57333	genome.wustl.edu	36	19	54729337	54729337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	54729337	54729337	C	T	SNP	RCN3	NM_020650	human	genbank	54_36p	1	provisional	silent	c.318	p.I106	1	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET"	-	no_errors
MED25	81857	genome.wustl.edu	36	19	55024874	55024874	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	55024874	55024874	T	C	SNP	MED25	NM_030973	human	genbank	54_36p	1	validated	missense	c.545	p.I182T	1	NULL	NULL	-	no_errors
SIGLEC11	114132	genome.wustl.edu	36	19	55153785	55153785	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	55153785	55153785	G	A	SNP	SIGLEC11	NM_052884	human	genbank	54_36p	-1	validated	silent	c.1254	p.H418	0	"HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMPfam_I-set,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC"	-	no_errors
MYH14	79784	genome.wustl.edu	36	19	55496777	55496777	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	55496777	55496777	C	G	SNP	MYH14	NM_001077186	human	genbank	54_36p	1	reviewed	silent	c.5418	p.A1806	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin"	-	no_errors
MYH14	79784	genome.wustl.edu	36	19	55496813	55496813	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	55496813	55496813	G	T	SNP	MYH14	NM_001077186	human	genbank	54_36p	1	reviewed	missense	c.5454	p.Q1818H	1	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYBPC2	4606	genome.wustl.edu	36	19	55631732	55631732	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	55631732	55631732	G	A	SNP	MYBPC2	NM_004533	human	genbank	54_36p	1	validated	missense	c.392	p.R131H	0.85	"superfamily_SSF48726,HMMSmart_IG"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2"	-	no_errors
SYT3	84258	genome.wustl.edu	36	19	55827452	55827452	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	55827452	55827452	C	T	SNP	SYT3	NM_032298	human	genbank	54_36p	-1	provisional	missense	c.577	p.G193R	0	NULL	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SAFB	6294	genome.wustl.edu	36	19	5592841	5592841	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	5592841	5592841	G	A	SNP	SAFB	NM_002967	human	genbank	54_36p	1	reviewed	missense	c.430	p.V144I	0.72	NULL	"superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
C19orf48	84798	genome.wustl.edu	36	19	55993446	55993446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	55993446	55993446	C	T	SNP	C19orf48	NM_199249	human	genbank	54_36p	-1	validated	silent	c.72	p.G24	0.2	NULL	NULL	-	no_errors
KLK3	354	genome.wustl.edu	36	19	56053124	56053124	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56053124	56053124	C	A	SNP	KLK3	NM_001648	human	genbank	54_36p	1	reviewed	missense	c.234	p.H78Q	0.21	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
KLK12	43849	genome.wustl.edu	36	19	56225964	56225964	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56225964	56225964	G	A	SNP	KLK12	NM_145895	human	genbank	54_36p	-1	reviewed	missense	c.223	p.P75S	0.97	NULL	"HMMPfam_Trypsin,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS"	-	no_errors
SIGLEC8	27181	genome.wustl.edu	36	19	56647504	56647504	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56647504	56647504	C	A	SNP	SIGLEC8	NM_014442	human	genbank	54_36p	-1	validated	missense	c.1441	p.A481S	0	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
SIGLEC8	27181	genome.wustl.edu	36	19	56649775	56649775	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56649775	56649775	G	T	SNP	SIGLEC8	NM_014442	human	genbank	54_36p	-1	validated	missense	c.1123	p.L375M	0.11	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
SIGLEC12	89858	genome.wustl.edu	36	19	56693200	56693200	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56693200	56693200	A	G	SNP	SIGLEC12	NM_053003	human	genbank	54_36p	-1	reviewed	missense	c.1289	p.V430A	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_ig"	-	no_errors
SIGLEC12	89858	genome.wustl.edu	36	19	56696534	56696534	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56696534	56696534	G	A	SNP	SIGLEC12	NM_053003	human	genbank	54_36p	-1	reviewed	missense	c.266	p.T89I	0	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
SIGLEC6	946	genome.wustl.edu	36	19	56722855	56722855	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56722855	56722855	T	C	SNP	SIGLEC6	NM_001245	human	genbank	54_36p	-1	validated	silent	c.1113	p.Q371	0	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00408,PatternScan_IG_MHC"	-	no_errors
HAS1	3036	genome.wustl.edu	36	19	56911381	56911381	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56911381	56911381	C	T	SNP	HAS1	NM_001523	human	genbank	54_36p	-1	reviewed	missense	c.1001	p.C334Y	1	superfamily_SSF53448	"superfamily_SSF53448,HMMPfam_Glycos_transf_2"	-	no_errors
ZNF577	84765	genome.wustl.edu	36	19	57068423	57068423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57068423	57068423	T	C	SNP	ZNF577	NM_032679	human	genbank	54_36p	-1	validated	missense	c.611	p.E204G	1	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF649	65251	genome.wustl.edu	36	19	57092003	57092003	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57092003	57092003	C	T	SNP	ZNF649	NM_023074	human	genbank	54_36p	-1	provisional	nonsense	c.56	p.W19*	0.97	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF613	79898	genome.wustl.edu	36	19	57140701	57140701	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57140701	57140701	T	C	SNP	ZNF613	NM_001031721	human	genbank	54_36p	1	provisional	silent	c.1753	p.L585	0	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF615	284370	genome.wustl.edu	36	19	57189366	57189366	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57189366	57189366	G	A	SNP	ZNF615	NM_198480	human	genbank	54_36p	-1	provisional	missense	c.775	p.H259Y	0.95	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF614	80110	genome.wustl.edu	36	19	57212179	57212179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57212179	57212179	C	T	SNP	ZNF614	NM_025040	human	genbank	54_36p	-1	validated	missense	c.484	p.E162K	0.02	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF614	80110	genome.wustl.edu	36	19	57212247	57212247	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57212247	57212247	G	C	SNP	ZNF614	NM_025040	human	genbank	54_36p	-1	validated	nonsense	c.416	p.S139*	0.07	NULL	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
TMEM146	257062	genome.wustl.edu	36	19	5722046	5722046	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	5722046	5722046	G	A	SNP	TMEM146	NM_152784	human	genbank	54_36p	1	validated	missense	c.1726	p.V576I	0.39	NULL	NULL	-	no_errors
ZNF841	284371	genome.wustl.edu	36	19	57261726	57261726	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57261726	57261726	G	A	SNP	ZNF841	ENST00000389534	human	ensembl	54_36p	-1	known	silent	c.873	p.G291	0.99	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_IG_MHC"	-	no_errors
PPP2R1A	5518	genome.wustl.edu	36	19	57408139	57408139	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57408139	57408139	G	T	SNP	PPP2R1A	NM_014225	human	genbank	54_36p	1	reviewed	missense	c.771	p.W257C	1	"superfamily_ARM repeat,HMMPfam_HEAT"	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
ZNF610	162963	genome.wustl.edu	36	19	57548776	57548776	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57548776	57548776	C	T	SNP	ZNF610	NM_173530	human	genbank	54_36p	1	provisional	silent	c.93	p.I31	0.72	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF83	55769	genome.wustl.edu	36	19	57809701	57809701	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	57809701	57809701	A	C	SNP	ZNF83	NR_003936	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0	-	-	-	no_errors
ZNF320	162967	genome.wustl.edu	36	19	58078740	58078740	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	19	58078740	58078740	G	A	SNP	ZNF320	ENST00000391780	human	ensembl	54_36p	-1	known	missense	c.172	p.H58Y	0	"superfamily_Krueppel-associated_box,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	-	no_start_codon
ZNF677	342926	genome.wustl.edu	36	19	58432476	58432476	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58432476	58432476	G	T	SNP	ZNF677	NM_182609	human	genbank	54_36p	-1	provisional	missense	c.1316	p.A439D	0.02	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
VN1R4	317703	genome.wustl.edu	36	19	58462410	58462410	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58462410	58462410	G	T	SNP	VN1R4	NM_173857	human	genbank	54_36p	-1	validated	silent	c.321	p.I107	0.29	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_V1R"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_V1R"	-	no_errors
VN1R4	317703	genome.wustl.edu	36	19	58462662	58462662	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58462662	58462662	G	C	SNP	VN1R4	NM_173857	human	genbank	54_36p	-1	validated	missense	c.69	p.F23L	0	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
ZNF525	170958	genome.wustl.edu	36	19	58576422	58576422	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58576422	58576422	C	T	SNP	ZNF525	NR_003699	human	genbank	54_36p	1	validated	rna	NULL	NULL	0	-	-	-	pseudogene
ZNF813	126017	genome.wustl.edu	36	19	58686366	58686366	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58686366	58686366	G	A	SNP	ZNF813	NM_001004301	human	genbank	54_36p	1	validated	silent	c.1068	p.K356	0.06	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF813	126017	genome.wustl.edu	36	19	58686814	58686814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58686814	58686814	C	T	SNP	ZNF813	NM_001004301	human	genbank	54_36p	1	validated	missense	c.1516	p.R506W	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
NLRP12	91662	genome.wustl.edu	36	19	59005210	59005210	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59005210	59005210	G	A	SNP	NLRP12	NM_144687	human	genbank	54_36p	-1	reviewed	silent	c.1515	p.N505	0.18	NULL	"HMMPfam_PAAD_DAPIN,superfamily_DEATH domain,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP12	91662	genome.wustl.edu	36	19	59006346	59006346	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59006346	59006346	C	T	SNP	NLRP12	NM_144687	human	genbank	54_36p	-1	reviewed	missense	c.379	p.E127K	0.28	NULL	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like"	-	no_errors
PRPF31	26121	genome.wustl.edu	36	19	59319829	59319829	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59319829	59319829	C	T	SNP	PRPF31	NM_015629	human	genbank	54_36p	1	reviewed	silent	c.837	p.I279	0.75	"superfamily_Nop domain,HMMPfam_Nop"	"HMMPfam_NOSIC,superfamily_Nop domain,HMMPfam_Nop,HMMPfam_Prp31_C"	-	no_errors
LENG1	79165	genome.wustl.edu	36	19	59352576	59352576	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59352576	59352576	C	T	SNP	LENG1	NM_024316	human	genbank	54_36p	-1	provisional	splice_site	c.313-1	e3-1	1	-	-	-	no_errors
LAIR1	3903	genome.wustl.edu	36	19	59559781	59559786	+	In_Frame_Del	DEL	GCTGTG	GCTGTG	-	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	GCTGTG	GCTGTG	GCTGTG	-	GCTGTG	GCTGTG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59559781	59559786	GCTGTG	-	DEL	LAIR1	NM_002287	human	genbank	54_36p	-1	reviewed	in_frame_del	c.622_617	p.PQ206in_frame_del	0.897:0.870:0.822:0.576:0.003:0.000	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"(deletion:cds_exon[59559777,59559819])"	no_errors
LAIR1	3903	genome.wustl.edu	36	19	59559791	59559791	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59559791	59559791	C	G	SNP	LAIR1	NM_002287	human	genbank	54_36p	-1	reviewed	missense	c.612	p.Q204H	0	NULL	"HMMSmart_SM00409,superfamily_Immunoglobulin"	-	no_errors
LAIR1	3903	genome.wustl.edu	36	19	59563475	59563475	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59563475	59563475	C	T	SNP	LAIR1	NM_002287	human	genbank	54_36p	-1	reviewed	silent	c.381	p.P127	0	NULL	"HMMSmart_SM00409,superfamily_Immunoglobulin"	-	no_errors
KIR3DX1	90011	genome.wustl.edu	36	19	59736895	59736895	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59736895	59736895	G	T	SNP	KIR3DX1	ENST00000221567	human	ensembl	54_36p	1	known	missense	c.203	p.S68I	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	-	no_errors
LILRA2	11027	genome.wustl.edu	36	19	59778192	59778192	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59778192	59778192	A	G	SNP	LILRA2	NM_006866	human	genbank	54_36p	1	validated	missense	c.535	p.I179V	0	"superfamily_SSF48726,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
LILRB4	11006	genome.wustl.edu	36	19	59867610	59867610	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59867610	59867610	G	A	SNP	LILRB4	NM_006847	human	genbank	54_36p	1	reviewed	missense	c.517	p.A173T	0	"superfamily_Immunoglobulin,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMPfam_ig"	-	no_errors
LILRB4	11006	genome.wustl.edu	36	19	59871015	59871015	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59871015	59871015	A	T	SNP	LILRB4	NM_006847	human	genbank	54_36p	1	reviewed	nonsense	c.1159	p.K387*	0	NULL	"HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
LILRB4	11006	genome.wustl.edu	36	19	59871171	59871171	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59871171	59871171	C	T	SNP	LILRB4	NM_006847	human	genbank	54_36p	1	reviewed	silent	c.1236	p.Y412	0.95	NULL	"HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
KIR3DL3	115653	genome.wustl.edu	36	19	59931137	59931137	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59931137	59931137	T	A	SNP	KIR3DL3	NM_153443	human	genbank	54_36p	1	reviewed	missense	c.604	p.L202I	0	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
KIR2DL3	3804	genome.wustl.edu	36	19	59941855	59941855	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	59941855	59941855	T	A	SNP	KIR2DL3	NM_015868	human	genbank	54_36p	1	reviewed	silent	c.33	p.V11	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	-	no_errors
KIR2DL3	3804	genome.wustl.edu	36	19	59947246	59947246	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59947246	59947246	G	A	SNP	KIR2DL3	NM_015868	human	genbank	54_36p	1	reviewed	missense	c.562	p.G188S	0	"HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
KIR2DL3	3804	genome.wustl.edu	36	19	59955724	59955724	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59955724	59955724	C	T	SNP	KIR2DL3	NM_015868	human	genbank	54_36p	1	reviewed	missense	c.967	p.P323S	0.06	NULL	"HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
KIR2DL1	3802	genome.wustl.edu	36	19	59993361	59993361	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	59993361	59993361	C	G	SNP	KIR2DL1	ENST00000391730	human	ensembl	54_36p	1	known	missense	c.728	p.S243C	0.74	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG"	-	no_errors
BRSK1	84446	genome.wustl.edu	36	19	60497400	60497400	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	60497400	60497400	C	A	SNP	BRSK1	NM_032430	human	genbank	54_36p	1	validated	silent	c.582	p.P194	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
NAT14	57106	genome.wustl.edu	36	19	60689988	60689988	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	60689988	60689988	G	T	SNP	NAT14	NM_020378	human	genbank	54_36p	1	provisional	missense	c.474	p.M158I	0.02	superfamily_Acyl_CoA_acyltransferase	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1"	-	no_errors
NLRP9	338321	genome.wustl.edu	36	19	60933032	60933032	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	60933032	60933032	A	T	SNP	NLRP9	NM_176820	human	genbank	54_36p	-1	reviewed	silent	c.1971	p.P657	0	superfamily_RNI-like	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,PatternScan_RIBOSOMAL_S2_1"	-	no_errors
NLRP9	338321	genome.wustl.edu	36	19	60941532	60941532	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	60941532	60941532	C	T	SNP	NLRP9	NM_176820	human	genbank	54_36p	-1	reviewed	silent	c.21	p.S7	0.03	"HMMPfam_PAAD_DAPIN,superfamily_DEATH domain"	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,PatternScan_RIBOSOMAL_S2_1,superfamily_RNI-like"	-	no_errors
NLRP13	126204	genome.wustl.edu	36	19	61099174	61099174	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61099174	61099174	C	A	SNP	NLRP13	NM_176810	human	genbank	54_36p	-1	validated	missense	c.3081	p.M1027I	0.05	superfamily_SSF52047	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMPfam_LRR_1"	-	no_errors
NLRP13	126204	genome.wustl.edu	36	19	61114937	61114937	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61114937	61114937	C	T	SNP	NLRP13	NM_176810	human	genbank	54_36p	-1	validated	silent	c.2058	p.K686	0.04	superfamily_SSF52047	"HMMPfam_LRR_1,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047"	-	no_errors
NLRP13	126204	genome.wustl.edu	36	19	61115783	61115783	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61115783	61115783	T	A	SNP	NLRP13	NM_176810	human	genbank	54_36p	-1	validated	missense	c.1212	p.E404D	0	NULL	"HMMPfam_LRR_1,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047"	-	no_errors
NLRP8	126205	genome.wustl.edu	36	19	61157935	61157935	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61157935	61157935	C	T	SNP	NLRP8	NM_176811	human	genbank	54_36p	1	provisional	silent	c.699	p.Y233	0.01	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT"	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP8	126205	genome.wustl.edu	36	19	61169559	61169559	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61169559	61169559	G	T	SNP	NLRP8	NM_176811	human	genbank	54_36p	1	provisional	splice_site	c.2381+1	e5+1	0.02	-	-	-	no_errors
NLRP5	126206	genome.wustl.edu	36	19	61231095	61231095	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61231095	61231095	C	T	SNP	NLRP5	NM_153447	human	genbank	54_36p	1	reviewed	missense	c.1627	p.R543C	0.02	NULL	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
ZSCAN5B	342933	genome.wustl.edu	36	19	61395871	61395871	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61395871	61395871	A	G	SNP	ZSCAN5B	NM_001080456	human	genbank	54_36p	-1	validated	silent	c.219	p.N73	0	"HMMPfam_SCAN,HMMSmart_SM00431"	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF583	147949	genome.wustl.edu	36	19	61617528	61617528	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61617528	61617528	G	T	SNP	ZNF583	NM_152478	human	genbank	54_36p	1	provisional	missense	c.139	p.V47F	0	"superfamily_Krueppel-associated_box,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF470	388566	genome.wustl.edu	36	19	61780271	61780271	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61780271	61780271	A	G	SNP	ZNF470	NM_001001668	human	genbank	54_36p	1	validated	missense	c.662	p.D221G	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZIM2	23619	genome.wustl.edu	36	19	61977939	61977939	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	61977939	61977939	G	A	SNP	ZIM2	NM_015363	human	genbank	54_36p	-1	provisional	nonsense	c.1513	p.R505*	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PEG3	5178	genome.wustl.edu	36	19	62017192	62017192	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62017192	62017192	C	A	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.4430	p.G1477V	0.8	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PEG3	5178	genome.wustl.edu	36	19	62017244	62017244	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62017244	62017244	C	T	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.4378	p.D1460N	0.99	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
PEG3	5178	genome.wustl.edu	36	19	62020445	62020445	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62020445	62020445	G	A	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.1177	p.R393C	1	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF264	9422	genome.wustl.edu	36	19	62414536	62414536	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62414536	62414536	G	A	SNP	ZNF264	NM_003417	human	genbank	54_36p	1	validated	missense	c.259	p.D87N	0.66	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
AURKC	6795	genome.wustl.edu	36	19	62436712	62436712	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62436712	62436712	G	C	SNP	AURKC	NM_001015878	human	genbank	54_36p	1	reviewed	missense	c.508	p.E170Q	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
AURKC	6795	genome.wustl.edu	36	19	62438448	62438448	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62438448	62438448	T	G	SNP	AURKC	NM_001015878	human	genbank	54_36p	1	reviewed	missense	c.781	p.S261A	0	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
ZNF304	57343	genome.wustl.edu	36	19	62559698	62559698	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62559698	62559698	T	C	SNP	ZNF304	NM_020657	human	genbank	54_36p	1	validated	missense	c.649	p.Y217H	0	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,PatternScan_IG_MHC,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2"	-	no_errors
ZNF549	256051	genome.wustl.edu	36	19	62741182	62741182	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	62741182	62741182	T	A	SNP	ZNF549	NM_153263	human	genbank	54_36p	1	provisional	missense	c.959	p.V320E	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF606	80095	genome.wustl.edu	36	19	63181780	63181780	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	63181780	63181780	G	A	SNP	ZNF606	NM_025027	human	genbank	54_36p	-1	validated	missense	c.2080	p.H694Y	0.08	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CLPP	8192	genome.wustl.edu	36	19	6319570	6319570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	6319570	6319570	G	A	SNP	CLPP	NM_006012	human	genbank	54_36p	1	reviewed	missense	c.683	p.R228H	1	"superfamily_SSF52096,HMMPfam_CLP_protease"	"superfamily_SSF52096,HMMPfam_CLP_protease,PatternScan_CLP_PROTEASE_SER,PatternScan_CLP_PROTEASE_HIS"	-	no_errors
ZNF324B	388569	genome.wustl.edu	36	19	63659017	63659017	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	63659017	63659017	G	C	SNP	ZNF324B	NM_207395	human	genbank	54_36p	1	validated	silent	c.894	p.S298	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF446	55663	genome.wustl.edu	36	19	63680403	63680403	+	Silent	SNP	A	G	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	63680403	63680403	A	G	SNP	ZNF446	NM_017908	human	genbank	54_36p	1	provisional	silent	c.6	p.P2	1	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,HMMSmart_KRAB,HMMPfam_KRAB,superfamily_Krueppel-associated_box,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MZF1	7593	genome.wustl.edu	36	19	63774194	63774194	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	63774194	63774194	C	T	SNP	MZF1	NM_003422	human	genbank	54_36p	-1	validated	silent	c.375	p.E125	0.32	"HMMPfam_SCAN,HMMSmart_SM00431"	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
C3	718	genome.wustl.edu	36	19	6635793	6635793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	6635793	6635793	G	T	SNP	C3	NM_000064	human	genbank	54_36p	-1	reviewed	missense	c.4022	p.T1341N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EMR1	2015	genome.wustl.edu	36	19	6870735	6870735	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	6870735	6870735	A	G	SNP	EMR1	NM_001974	human	genbank	54_36p	1	reviewed	missense	c.1597	p.I533V	0	superfamily_Family A G protein-coupled receptor-like	###############################################################################################################################################################################################################################################################	-	no_errors
EMR1	2015	genome.wustl.edu	36	19	6877553	6877553	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	6877553	6877553	G	A	SNP	EMR1	NM_001974	human	genbank	54_36p	1	reviewed	silent	c.2163	p.P721	0.97	"HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like"	###############################################################################################################################################################################################################################################################	-	no_errors
EMR4P	326342	genome.wustl.edu	36	19	6932089	6932090	+	Splice_Site	INS	-	-	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	-	-	-	C	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	6932089	6932090	-	C	INS	EMR4P	ENST00000359590	human	ensembl	54_36p	-1	known	splice_site_ins	c.541+1_541+1	e6+1	0.776:0.771	-	-	-	no_errors
EMR4P	326342	genome.wustl.edu	36	19	6941796	6941796	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	6941796	6941796	A	G	SNP	EMR4P	ENST00000359590	human	ensembl	54_36p	-1	known	missense	c.14	p.F5S	0.01	NULL	"PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
ZNF557	79230	genome.wustl.edu	36	19	7034614	7034614	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	7034614	7034614	C	T	SNP	ZNF557	NM_001044387	human	genbank	54_36p	1	validated	silent	c.1152	p.S384	0.24	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
INSR	3643	genome.wustl.edu	36	19	7068339	7068339	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	7068339	7068339	C	A	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	missense	c.3877	p.D1293Y	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGEF18	23370	genome.wustl.edu	36	19	7429469	7429469	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	7429469	7429469	G	T	SNP	ARHGEF18	NM_015318	human	genbank	54_36p	1	reviewed	missense	c.1215	p.M405I	1	"HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH"	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
C19orf45	374877	genome.wustl.edu	36	19	7476999	7476999	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	7476999	7476999	G	A	SNP	C19orf45	NM_198534	human	genbank	54_36p	1	validated	silent	c.1113	p.Q371	0	NULL	NULL	-	no_errors
C19orf45	374877	genome.wustl.edu	36	19	7477020	7477020	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	7477020	7477020	G	A	SNP	C19orf45	NM_198534	human	genbank	54_36p	1	validated	silent	c.1134	p.L378	0	NULL	NULL	-	no_errors
PNPLA6	10908	genome.wustl.edu	36	19	7520842	7520842	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	7520842	7520842	G	A	SNP	PNPLA6	NM_006702	human	genbank	54_36p	1	validated	missense	c.1541	p.R514H	1	"superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding"	"superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,superfamily_Acyl_Trfase/lysoPlipase,HMMPfam_Patatin,PatternScan_UPF0028"	-	no_errors
PNPLA6	10908	genome.wustl.edu	36	19	7525516	7525516	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	7525516	7525516	C	T	SNP	PNPLA6	NM_006702	human	genbank	54_36p	1	validated	silent	c.2427	p.D809	0.91	NULL	"HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_UPF0028,HMMPfam_Patatin,superfamily_Acyl_Trfase/lysoPlipase,superfamily_cNMP_binding"	-	no_errors
PTBP1	5725	genome.wustl.edu	36	19	756531	756531	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	756531	756531	C	T	SNP	PTBP1	NM_002819	human	genbank	54_36p	1	reviewed	missense	c.932	p.A311V	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
STXBP2	6813	genome.wustl.edu	36	19	7611910	7611910	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	7611910	7611910	G	T	SNP	STXBP2	ENST00000320400	human	ensembl	54_36p	1	known	silent	c.1011	p.L337	0.07	NULL	"PatternScan_VWFC_1,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1"	-	no_start_codon
FBN3	84467	genome.wustl.edu	36	19	8061128	8061128	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8061128	8061128	C	G	SNP	FBN3	ENST00000341066	human	ensembl	54_36p	-1	known	missense	c.398	p.G133A	0.98	NULL	"PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_TB module/8-cys domain,HMMPfam_TB"	-	no_errors
FBN3	84467	genome.wustl.edu	36	19	8097368	8097368	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8097368	8097368	G	A	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	silent	c.2538	p.C846	1	"HMMPfam_TB,superfamily_TB module/8-cys domain"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
FBN3	84467	genome.wustl.edu	36	19	8107405	8107405	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8107405	8107405	G	A	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	silent	c.1212	p.T404	0.12	NULL	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
FBN3	84467	genome.wustl.edu	36	19	8112902	8112902	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8112902	8112902	G	A	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	missense	c.661	p.P221S	1	"HMMPfam_TB,superfamily_TB module/8-cys domain"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
LASS4	79603	genome.wustl.edu	36	19	8228867	8228867	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8228867	8228867	C	A	SNP	LASS4	NM_024552	human	genbank	54_36p	1	validated	silent	c.846	p.T282	0.78	"HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	"superfamily_Homeodomain-like,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
ANGPTL4	51129	genome.wustl.edu	36	19	8337185	8337185	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8337185	8337185	A	C	SNP	ANGPTL4	NM_139314	human	genbank	54_36p	1	reviewed	missense	c.529	p.N177H	0.04	superfamily_Fibrinogen_a/b/g_C	"superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
MARCH2	51257	genome.wustl.edu	36	19	8397561	8397561	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8397561	8397561	G	C	SNP	MARCH2	NM_001005415	human	genbank	54_36p	1	validated	missense	c.245	p.C82S	1	"superfamily_SSF57850,HMMSmart_RINGv,HMMPfam_zf-C3HC4"	"superfamily_SSF57850,HMMSmart_RINGv,HMMPfam_zf-C3HC4"	-	no_errors
MYO1F	4542	genome.wustl.edu	36	19	8493323	8493323	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	8493323	8493323	A	G	SNP	MYO1F	NM_012335	human	genbank	54_36p	-1	provisional	missense	c.3158	p.V1053A	0.12	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
MYO1F	4542	genome.wustl.edu	36	19	8526639	8526639	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8526639	8526639	C	G	SNP	MYO1F	NM_012335	human	genbank	54_36p	-1	provisional	missense	c.45	p.K15N	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_TH1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8837817	8837817	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8837817	8837817	G	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.42249	p.I14083	1	"superfamily_SEA domain,HMMPfam_SEA"	"PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8854365	8854371	+	Splice_Site	DEL	CCGCTCA	CCGCTCA	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	CCGCTCA	CCGCTCA	CCGCTCA	-	CCGCTCA	CCGCTCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8854365	8854371	CCGCTCA	-	DEL	MUC16	NM_024690	human	genbank	54_36p	-1	validated	splice_site_del	c.41716+2_41716+1	e66+2	0.000:0.001:0.004:0.244:0.794:0.911:0.982	-	-	"(deletion:intron[8854043,8854372])"	no_errors
MUC16	94025	genome.wustl.edu	36	19	8854503	8854503	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8854503	8854503	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	nonsense	c.41586	p.C13862*	0.37	"HMMPfam_SEA,superfamily_SEA domain"	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8859702	8859702	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8859702	8859702	G	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.40881	p.P13627	0	superfamily_SEA domain	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8929974	8929974	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8929974	8929974	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.18472	p.Q6158K	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8933137	8933137	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8933137	8933137	C	G	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.15309	p.K5103N	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8934638	8934638	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8934638	8934638	C	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.13808	p.R4603Q	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8936296	8936296	+	Missense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	19	8936296	8936296	T	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.12150	p.E4050D	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	genome.wustl.edu	36	19	8950509	8950509	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	8950509	8950509	A	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.2306	p.V769D	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
OR7G1	125962	genome.wustl.edu	36	19	9086597	9086597	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9086597	9086597	G	T	SNP	OR7G1	NM_001005192	human	genbank	54_36p	-1	provisional	silent	c.843	p.V281	0.47	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR7G3	390883	genome.wustl.edu	36	19	9098569	9098569	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9098569	9098569	C	A	SNP	OR7G3	NM_001001958	human	genbank	54_36p	-1	provisional	missense	c.58	p.D20Y	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR7D2	162998	genome.wustl.edu	36	19	9157785	9157785	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9157785	9157785	C	G	SNP	OR7D2	NM_175883	human	genbank	54_36p	1	provisional	missense	c.328	p.L110V	0	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZNF177	7730	genome.wustl.edu	36	19	9353249	9353249	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9353249	9353249	C	G	SNP	ZNF177	NM_003451	human	genbank	54_36p	1	provisional	missense	c.762	p.H254Q	0.07	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF426	79088	genome.wustl.edu	36	19	9502741	9502741	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9502741	9502741	A	G	SNP	ZNF426	NM_024106	human	genbank	54_36p	-1	provisional	missense	c.328	p.W110R	0.03	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00614"	-	no_errors
ZNF561	93134	genome.wustl.edu	36	19	9582465	9582465	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9582465	9582465	C	G	SNP	ZNF561	NM_152289	human	genbank	54_36p	-1	validated	missense	c.665	p.R222T	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF812	729648	genome.wustl.edu	36	19	9665486	9665486	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9665486	9665486	G	A	SNP	ZNF812	XM_001726949	human	genbank	54_36p	-1	model	missense	c.125	p.T42M	0.04	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
COL5A3	50509	genome.wustl.edu	36	19	9932135	9932135	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9932135	9932135	C	T	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	silent	c.5190	p.T1730	0.13	"HMMSmart_SM00038,HMMPfam_COLFI"	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9946074	9946074	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9946074	9946074	C	G	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.3353	p.G1118A	0.99	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
COL5A3	50509	genome.wustl.edu	36	19	9958016	9958016	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9958016	9958016	C	G	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.2327	p.G776A	0.96	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
RDH8	50700	genome.wustl.edu	36	19	9988889	9988889	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	9988889	9988889	T	A	SNP	RDH8	NM_015725	human	genbank	54_36p	1	validated	missense	c.260	p.L87Q	1	"superfamily_NAD(P)-bd,HMMPfam_adh_short"	"superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
ENSG00000161149	0	genome.wustl.edu	36	22	19693539	19693539	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	19693539	19693539	C	T	SNP	ENSG00000161149	ENST00000292748	human	ensembl	54_36p	-1	known	silent	c.321	p.T107	1	"superfamily_Tubulin_FtsZ,HMMPfam_Tubulin"	"superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN"	-	no_errors
LOC100133326	100133326	genome.wustl.edu	36	3	197149395	197149395	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197149395	197149395	C	T	SNP	LOC100133326	XR_037589	human	genbank	54_36p	1	model	rna	NULL	NULL	0.18	-	-	-	pseudogene
LOC100128975	100128975	genome.wustl.edu	36	19	19909009	19909009	+	Silent	SNP	G	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	19	19909009	19909009	G	A	SNP	LOC100128975	XM_001719745	human	genbank	54_36p	-1	model	silent	c.279	p.V93	0	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	-	no_errors
LOC642131	642131	genome.wustl.edu	36	15	19974526	19974526	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	19974526	19974526	G	T	SNP	LOC642131	XM_001716834	human	genbank	54_36p	-1	model	missense	c.130	p.L44M	0.6	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_errors
CHST10	9486	genome.wustl.edu	36	2	100380953	100380953	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	100380953	100380953	G	T	SNP	CHST10	NM_004854	human	genbank	54_36p	-1	validated	nonsense	c.276	p.C92*	1	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
NMS	129521	genome.wustl.edu	36	2	100463390	100463390	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	100463390	100463390	G	T	SNP	NMS	NM_001011717	human	genbank	54_36p	1	provisional	missense	c.337	p.G113C	0.03	NULL	PatternScan_NMU	-	no_errors
NPAS2	4862	genome.wustl.edu	36	2	100931172	100931172	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	100931172	100931172	A	G	SNP	NPAS2	NM_002518	human	genbank	54_36p	1	reviewed	missense	c.407	p.Q136R	1	"HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785"	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC"	-	no_errors
TBC1D8	11138	genome.wustl.edu	36	2	101021355	101021355	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	101021355	101021355	C	A	SNP	TBC1D8	NM_001102426	human	genbank	54_36p	-1	validated	missense	c.1230	p.M410I	0.98	NULL	"HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand"	-	no_errors
TBC1D8	11138	genome.wustl.edu	36	2	101023143	101023143	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	101023143	101023143	C	T	SNP	TBC1D8	NM_001102426	human	genbank	54_36p	-1	validated	missense	c.964	p.A322T	0.98	"HMMPfam_GRAM,HMMSmart_SM00568"	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_EF-hand"	-	no_errors
TBC1D8	11138	genome.wustl.edu	36	2	101073171	101073171	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	101073171	101073171	T	C	SNP	TBC1D8	NM_001102426	human	genbank	54_36p	-1	validated	missense	c.215	p.Q72R	1	NULL	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_EF-hand"	-	no_errors
RNF149	284996	genome.wustl.edu	36	2	101278050	101278050	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	101278050	101278050	C	T	SNP	RNF149	NM_173647	human	genbank	54_36p	-1	provisional	missense	c.486	p.M162I	1	"superfamily_SSF52025,HMMPfam_PA"	"PatternScan_ZF_RING_1,superfamily_SSF52025,HMMPfam_PA,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
IL18RAP	8807	genome.wustl.edu	36	2	102424267	102424267	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	102424267	102424267	T	A	SNP	IL18RAP	NM_003853	human	genbank	54_36p	1	reviewed	missense	c.794	p.L265H	1	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
MFSD9	84804	genome.wustl.edu	36	2	102701787	102701787	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	102701787	102701787	G	A	SNP	MFSD9	NM_032718	human	genbank	54_36p	-1	validated	missense	c.949	p.R317W	0.99	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
MFSD9	84804	genome.wustl.edu	36	2	102701900	102701900	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	102701900	102701900	T	A	SNP	MFSD9	NM_032718	human	genbank	54_36p	-1	validated	missense	c.836	p.N279I	0.03	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
ODC1	89874	genome.wustl.edu	36	2	10502581	10502581	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	10502581	10502581	T	C	SNP	ODC1	NM_002539	human	genbank	54_36p	-1	reviewed	missense	c.29	p.D10G	1	NULL	"HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1,PatternScan_ODR_DC_2_2,superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC"	-	no_errors
GPR45	11250	genome.wustl.edu	36	2	105225600	105225600	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	105225600	105225600	G	A	SNP	GPR45	NM_007227	human	genbank	54_36p	1	reviewed	missense	c.853	p.V285I	0.73	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
FHL2	2274	genome.wustl.edu	36	2	105356556	105356556	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	105356556	105356556	G	A	SNP	FHL2	NM_001039492	human	genbank	54_36p	-1	reviewed	silent	c.223	p.L75	0.94	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
RGPD3	653489	genome.wustl.edu	36	2	106419448	106419448	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	106419448	106419448	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	54_36p	-1	known	silent	c.1488	p.S496	1	NULL	"superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_Grip"	-	no_errors
ST6GAL2	84620	genome.wustl.edu	36	2	106815517	106815517	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	106815517	106815517	G	A	SNP	ST6GAL2	NM_032528	human	genbank	54_36p	-1	validated	missense	c.1079	p.S360L	1	"HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase"	"HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase"	-	no_errors
ST6GAL2	84620	genome.wustl.edu	36	2	106826674	106826674	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	106826674	106826674	G	A	SNP	ST6GAL2	NM_032528	human	genbank	54_36p	-1	validated	silent	c.192	p.A64	0.04	NULL	"HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase"	-	no_errors
SLC5A7	60482	genome.wustl.edu	36	2	107989086	107989086	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	107989086	107989086	A	C	SNP	SLC5A7	NM_021815	human	genbank	54_36p	1	provisional	silent	c.891	p.S297	1	HMMPfam_SSF	"PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF"	-	no_errors
SULT1C2	6819	genome.wustl.edu	36	2	108287559	108287559	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	108287559	108287559	A	G	SNP	SULT1C2	NM_176825	human	genbank	54_36p	1	reviewed	missense	c.506	p.E169G	0.98	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
CCDC138	165055	genome.wustl.edu	36	2	108798892	108798892	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	108798892	108798892	C	G	SNP	CCDC138	NM_144978	human	genbank	54_36p	1	provisional	missense	c.1105	p.H369D	1	NULL	NULL	-	no_errors
SH3RF3	344558	genome.wustl.edu	36	2	109330603	109330603	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	109330603	109330603	C	T	SNP	SH3RF3	NM_001099289	human	genbank	54_36p	1	provisional	silent	c.615	p.Y205	0.54	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_stop_codon
NPHP1	4867	genome.wustl.edu	36	2	110284692	110284692	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	110284692	110284692	C	G	SNP	NPHP1	NM_000272	human	genbank	54_36p	-1	reviewed	missense	c.502	p.V168L	0.73	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
LOC442041	442041	genome.wustl.edu	36	2	110554118	110554118	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	110554118	110554118	C	A	SNP	LOC442041	XR_016876	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ZC3H6	376940	genome.wustl.edu	36	2	112784057	112784057	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	112784057	112784057	A	G	SNP	ZC3H6	NM_198581	human	genbank	54_36p	1	validated	missense	c.461	p.D154G	1	NULL	"superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_Multiheme cytochromes"	-	no_errors
ZC3H6	376940	genome.wustl.edu	36	2	112790617	112790617	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	112790617	112790617	G	A	SNP	ZC3H6	NM_198581	human	genbank	54_36p	1	validated	missense	c.847	p.E283K	1	"HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger"	"HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_Multiheme cytochromes,superfamily_CCCH zinc finger"	-	no_errors
ZC3H6	376940	genome.wustl.edu	36	2	112805053	112805053	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	112805053	112805053	A	G	SNP	ZC3H6	NM_198581	human	genbank	54_36p	1	validated	missense	c.2087	p.D696G	1	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_Multiheme cytochromes,superfamily_CCCH zinc finger"	-	no_errors
SLC20A1	6574	genome.wustl.edu	36	2	113133017	113133017	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	113133017	113133017	T	A	SNP	SLC20A1	NM_005415	human	genbank	54_36p	1	provisional	missense	c.923	p.L308H	0.27	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors
IL1F7	27178	genome.wustl.edu	36	2	113391711	113391711	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	113391711	113391711	G	A	SNP	IL1F7	NM_014439	human	genbank	54_36p	1	reviewed	silent	c.294	p.L98	0	"HMMSmart_SM00125,superfamily_Cytokine"	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1"	-	no_errors
IL1F6	27179	genome.wustl.edu	36	2	113481917	113481917	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	113481917	113481917	C	T	SNP	IL1F6	NM_014440	human	genbank	54_36p	1	provisional	missense	c.302	p.P101L	0	"superfamily_Cytok_IL1_like,HMMSmart_IL1,HMMPfam_IL1"	"PatternScan_INTERLEUKIN_1,superfamily_Cytok_IL1_like,HMMSmart_IL1,HMMPfam_IL1"	-	no_errors
PSD4	23550	genome.wustl.edu	36	2	113660286	113660286	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	113660286	113660286	C	G	SNP	PSD4	NM_012455	human	genbank	54_36p	1	validated	missense	c.1611	p.H537Q	0	HMMPfam_Sec7	"HMMPfam_Sec7,superfamily_Sec7 domain,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
DPP10	57628	genome.wustl.edu	36	2	116163927	116163927	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	116163927	116163927	T	A	SNP	DPP10	NM_020868	human	genbank	54_36p	1	reviewed	missense	c.536	p.V179D	0.97	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N"	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9"	-	no_errors
DPP10	57628	genome.wustl.edu	36	2	116227344	116227344	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	116227344	116227344	G	A	SNP	DPP10	NM_020868	human	genbank	54_36p	1	reviewed	splice_site	c.1074+1	e11+1	1	-	-	-	no_errors
DPP10	57628	genome.wustl.edu	36	2	116236628	116236628	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	116236628	116236628	T	C	SNP	DPP10	NM_020868	human	genbank	54_36p	1	reviewed	missense	c.1085	p.M362T	1	"HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	"HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	-	no_errors
DPP10	57628	genome.wustl.edu	36	2	116251275	116251275	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	116251275	116251275	G	A	SNP	DPP10	NM_020868	human	genbank	54_36p	1	reviewed	missense	c.1243	p.V415M	0.98	"HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	"HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	-	no_errors
DDX18	8886	genome.wustl.edu	36	2	118303345	118303345	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	118303345	118303345	T	C	SNP	DDX18	NM_006773	human	genbank	54_36p	1	reviewed	missense	c.1703	p.L568S	1	superfamily_SSF52540	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
MARCO	8685	genome.wustl.edu	36	2	119445573	119445573	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	119445573	119445573	C	G	SNP	MARCO	NM_006770	human	genbank	54_36p	1	reviewed	silent	c.453	p.G151	0	NULL	"HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
PTPN4	5775	genome.wustl.edu	36	2	120284016	120284016	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	120284016	120284016	T	A	SNP	PTPN4	NM_002830	human	genbank	54_36p	1	reviewed	silent	c.117	p.T39	1	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	124716338	124716338	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	124716338	124716338	G	A	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	silent	c.279	p.T93	0.89	"HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	124948826	124948826	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	124948826	124948826	C	T	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	missense	c.959	p.T320I	1	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	125376997	125376997	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	125376997	125376997	G	A	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	missense	c.3502	p.V1168I	1	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	genome.wustl.edu	36	2	125388203	125388203	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	125388203	125388203	C	A	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	nonsense	c.3789	p.Y1263*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
BIN1	274	genome.wustl.edu	36	2	127544044	127544044	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	127544044	127544044	G	T	SNP	BIN1	NM_139343	human	genbank	54_36p	-1	reviewed	silent	c.408	p.I136	1	"HMMSmart_SM00721,HMMPfam_BAR"	"HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
MAP3K2	10746	genome.wustl.edu	36	2	127788865	127788865	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	127788865	127788865	G	C	SNP	MAP3K2	NM_006609	human	genbank	54_36p	-1	reviewed	missense	c.1391	p.T464S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"HMMPfam_PB1,HMMSmart_SM00666,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
UGGT1	56886	genome.wustl.edu	36	2	128603092	128603092	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	128603092	128603092	A	G	SNP	UGCGL1	NM_020120	human	genbank	54_36p	1	validated	missense	c.1246	p.N416D	1	NULL	"HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases"	-	no_errors
POTEF	728378	genome.wustl.edu	36	2	130549240	130549240	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	130549240	130549240	G	A	SNP	POTEF	NM_001099771	human	genbank	54_36p	-1	validated	nonsense	c.2275	p.Q759*	1	"superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN"	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
POTEF	728378	genome.wustl.edu	36	2	130549478	130549478	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	130549478	130549478	A	G	SNP	POTEF	NM_001099771	human	genbank	54_36p	-1	validated	silent	c.2037	p.D679	0	NULL	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_SSF53067"	-	no_errors
PTPN18	26469	genome.wustl.edu	36	2	130845308	130845308	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	130845308	130845308	C	T	SNP	PTPN18	NM_014369	human	genbank	54_36p	1	reviewed	missense	c.991	p.R331C	0	NULL	"HMMSmart_PTPc,superfamily_SSF52799,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
LOC653269	653269	genome.wustl.edu	36	2	130937528	130937528	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	130937528	130937528	C	T	SNP	LOC653269	XM_928585	human	genbank	54_36p	-1	model	missense	c.2559	p.M853I	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
PLEKHB2	55041	genome.wustl.edu	36	2	131620728	131620728	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	131620728	131620728	A	T	SNP	PLEKHB2	NM_001100623	human	genbank	54_36p	1	validated	missense	c.581	p.Y194F	0.97	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
POTEE	445582	genome.wustl.edu	36	2	131737909	131737909	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	131737909	131737909	T	C	SNP	POTEE	NM_001083538	human	genbank	54_36p	1	validated	missense	c.2411	p.L804P	1	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
LOC401002	401002	genome.wustl.edu	36	2	131826616	131826616	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	131826616	131826616	T	A	SNP	LOC401002	XR_039216	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
POTEKP	440915	genome.wustl.edu	36	2	132098014	132098014	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	132098014	132098014	A	G	SNP	ACTBL3	ENST00000397487	human	ensembl	54_36p	1	known	splice_site	c.1494-2	e11-2	0	-	-	-	no_stop_codon
LOC389049	389049	genome.wustl.edu	36	2	132197514	132197514	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	132197514	132197514	A	C	SNP	LOC389049	XR_017334	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.98	-	-	-	pseudogene
ZNF806	646915	genome.wustl.edu	36	2	132792670	132792670	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	132792670	132792670	T	C	SNP	ZNF806	XM_001724242	human	genbank	54_36p	1	model	missense	c.1661	p.L554P	0.02	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
NCKAP5	344148	genome.wustl.edu	36	2	133257909	133257909	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	133257909	133257909	A	T	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	missense	c.2945	p.I982N	0.02	NULL	NULL	-	no_errors
NCKAP5	344148	genome.wustl.edu	36	2	133258058	133258058	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	133258058	133258058	A	T	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	silent	c.2796	p.P932	1	NULL	NULL	-	no_errors
YSK4	80122	genome.wustl.edu	36	2	135465585	135465585	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	135465585	135465585	T	C	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	missense	c.610	p.S204G	0.96	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
YSK4	80122	genome.wustl.edu	36	2	135472902	135472902	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	135472902	135472902	C	G	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	missense	c.450	p.R150S	0.04	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
YSK4	80122	genome.wustl.edu	36	2	135495840	135495840	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	135495840	135495840	C	T	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	missense	c.53	p.C18Y	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
RAB3GAP1	22930	genome.wustl.edu	36	2	135642764	135642764	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	135642764	135642764	C	T	SNP	RAB3GAP1	NM_012233	human	genbank	54_36p	1	validated	silent	c.2889	p.L963	1	NULL	NULL	-	no_errors
LCT	3938	genome.wustl.edu	36	2	136283476	136283476	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	136283476	136283476	C	A	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	missense	c.2911	p.V971L	1	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat"	"superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_1,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
LCT	3938	genome.wustl.edu	36	2	136286558	136286558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	136286558	136286558	C	G	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	missense	c.2146	p.V716L	0.04	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat"	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2"	-	no_errors
LCT	3938	genome.wustl.edu	36	2	136311151	136311151	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	136311151	136311151	G	T	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	nonsense	c.59	p.S20*	0.01	superfamily_Glyco_hydro_cat	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2"	-	no_errors
DARS	1615	genome.wustl.edu	36	2	136457479	136457479	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	136457479	136457479	T	G	SNP	DARS	NM_001349	human	genbank	54_36p	-1	validated	silent	c.82	p.R28	1	superfamily_Nucleic acid-binding proteins	"superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
LOC648390	648390	genome.wustl.edu	36	2	136803840	136803840	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	136803840	136803840	C	T	SNP	LOC648390	XR_037845	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
THSD7B	80731	genome.wustl.edu	36	2	137706999	137706999	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	137706999	137706999	C	A	SNP	THSD7B	NM_001080427	human	genbank	54_36p	1	provisional	missense	c.1883	p.S628Y	1	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
NXPH2	11249	genome.wustl.edu	36	2	139145339	139145339	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	139145339	139145339	C	A	SNP	NXPH2	NM_007226	human	genbank	54_36p	-1	validated	nonsense	c.418	p.G140*	1	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
NXPH2	11249	genome.wustl.edu	36	2	139145435	139145435	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	139145435	139145435	A	T	SNP	NXPH2	NM_007226	human	genbank	54_36p	-1	validated	missense	c.322	p.F108I	1	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
NXPH2	11249	genome.wustl.edu	36	2	139145697	139145697	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	139145697	139145697	A	T	SNP	NXPH2	NM_007226	human	genbank	54_36p	-1	validated	nonsense	c.60	p.C20*	1	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	140797959	140797960	+	Missense_Mutation	DNP	TC	TC	CT	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	TC	TC	TC	CT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	140797959	140797960	TC	CT	DNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.12487_12486	p.I4163V	1.000:1.000	superfamily_SSF63825	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	140930574	140930574	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	140930574	140930574	T	A	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.9883	p.T3295S	0.03	"HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	140975767	140975767	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	140975767	140975767	C	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.8809	p.G2937R	1	"HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	141174615	141174615	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	141174615	141174615	C	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.6473	p.C2158Y	1	"HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	genome.wustl.edu	36	2	141175790	141175790	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	141175790	141175790	C	G	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.6397	p.V2133L	0.99	superfamily_SSF63825	###############################################################################################################################################################################################################################################################	-	no_errors
GTDC1	79712	genome.wustl.edu	36	2	144481356	144481356	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	144481356	144481356	C	G	SNP	GTDC1	NM_001006636	human	genbank	54_36p	-1	provisional	missense	c.738	p.L246F	0.03	NULL	"HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase"	-	no_errors
TPO	7173	genome.wustl.edu	36	2	1470757	1470757	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	1470757	1470757	C	A	SNP	TPO	NM_000547	human	genbank	54_36p	1	reviewed	missense	c.1755	p.D585E	1	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	###############################################################################################################################################################################################################################################################	-	no_errors
ORC4	5000	genome.wustl.edu	36	2	148446807	148446807	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	148446807	148446807	T	A	SNP	ORC4L	NM_002552	human	genbank	54_36p	-1	reviewed	missense	c.196	p.I66F	1	"superfamily_SSF52540,HMMSmart_AAA"	"superfamily_SSF52540,HMMSmart_AAA"	-	no_errors
TPO	7173	genome.wustl.edu	36	2	1486840	1486840	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	1486840	1486840	G	A	SNP	TPO	NM_000547	human	genbank	54_36p	1	reviewed	missense	c.2500	p.D834N	0.99	"HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
MBD5	55777	genome.wustl.edu	36	2	148964276	148964276	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	148964276	148964276	A	C	SNP	MBD5	NM_018328	human	genbank	54_36p	1	validated	silent	c.3906	p.G1302	1	NULL	"HMMSmart_SM00391,HMMPfam_MBD,superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP"	-	no_errors
EPC2	26122	genome.wustl.edu	36	2	149255757	149255757	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	149255757	149255757	G	T	SNP	EPC2	NM_015630	human	genbank	54_36p	1	validated	missense	c.1663	p.A555S	1	HMMPfam_E_Pc_C	"HMMPfam_EPL1,HMMPfam_E_Pc_C"	-	no_errors
RIF1	55183	genome.wustl.edu	36	2	152028237	152028237	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	152028237	152028237	A	C	SNP	RIF1	NM_018151	human	genbank	54_36p	1	validated	missense	c.3957	p.E1319D	0.48	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
RIF1	55183	genome.wustl.edu	36	2	152028439	152028439	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	152028439	152028439	A	G	SNP	RIF1	NM_018151	human	genbank	54_36p	1	validated	missense	c.4159	p.N1387D	1	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152055155	152055155	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	152055155	152055155	C	T	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.19706	p.G6569E	0.99	NULL	"HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152117480	152117480	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	152117480	152117480	A	G	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	silent	c.14685	p.D4895	0.99	"HMMPfam_Nebulin,HMMSmart_SM00227"	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152220659	152220659	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	152220659	152220659	T	G	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.6620	p.H2207P	1	HMMSmart_SM00227	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	-	no_errors
FMNL2	114793	genome.wustl.edu	36	2	153125679	153125679	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	153125679	153125679	C	T	SNP	FMNL2	NM_052905	human	genbank	54_36p	1	reviewed	silent	c.480	p.S160	0.47	HMMPfam_Drf_GBD	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
PRPF40A	55660	genome.wustl.edu	36	2	153280796	153280796	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	153280796	153280796	G	C	SNP	PRPF40A	NM_017892	human	genbank	54_36p	-1	validated	missense	c.175	p.P59A	1	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_FF domain,HMMSmart_SM00441,HMMPfam_FF"	-	no_errors
LOC642635	642635	genome.wustl.edu	36	2	153985282	153985282	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	153985282	153985282	G	C	SNP	LOC642635	XR_016188	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC642635	642635	genome.wustl.edu	36	2	153985286	153985286	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	153985286	153985286	G	A	SNP	LOC642635	XR_016188	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC642635	642635	genome.wustl.edu	36	2	153985776	153985776	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	153985776	153985776	G	A	SNP	LOC642635	XR_016188	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
NBAS	51594	genome.wustl.edu	36	2	15481953	15481953	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	15481953	15481953	C	G	SNP	NBAS	NM_015909	human	genbank	54_36p	-1	validated	silent	c.2514	p.T838	0.05	HMMPfam_Sec39	"superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14"	-	no_errors
NR4A2	4929	genome.wustl.edu	36	2	156891607	156891607	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	156891607	156891607	C	A	SNP	NR4A2	NM_006186	human	genbank	54_36p	-1	reviewed	silent	c.1230	p.L410	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
NR4A2	4929	genome.wustl.edu	36	2	156894112	156894112	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	156894112	156894112	C	T	SNP	NR4A2	NM_006186	human	genbank	54_36p	-1	reviewed	missense	c.833	p.R278H	1	"HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	"HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
NR4A2	4929	genome.wustl.edu	36	2	156894513	156894513	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	156894513	156894513	G	A	SNP	NR4A2	NM_006186	human	genbank	54_36p	-1	reviewed	silent	c.432	p.D144	1	NULL	"HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
GPD2	2820	genome.wustl.edu	36	2	157147615	157147615	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	157147615	157147615	C	T	SNP	GPD2	NM_000408	human	genbank	54_36p	1	validated	missense	c.2123	p.A708V	0.98	superfamily_FAD/NAD(P)-binding domain	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,PatternScan_FAD_G3PDH_1,superfamily_FAD-linked reductases C-terminal domain,PatternScan_FAD_G3PDH_2,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
ACVR1	90	genome.wustl.edu	36	2	158302334	158302334	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	158302334	158302334	C	G	SNP	ACVR1	NM_001105	human	genbank	54_36p	-1	reviewed	missense	c.1485	p.L495F	1	"superfamily_Kinase_like,HMMPfam_Pkinase"	"HMMPfam_Activin_recp,superfamily_SSF57302,HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CCDC148	130940	genome.wustl.edu	36	2	158743702	158743702	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	158743702	158743702	C	A	SNP	CCDC148	NM_138803	human	genbank	54_36p	-1	provisional	missense	c.1423	p.V475L	0.93	NULL	NULL	-	no_errors
CCDC148	130940	genome.wustl.edu	36	2	158878516	158878516	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	158878516	158878516	A	T	SNP	CCDC148	NM_138803	human	genbank	54_36p	-1	provisional	missense	c.901	p.L301M	1	NULL	NULL	-	no_errors
PKP4	8502	genome.wustl.edu	36	2	159186089	159186089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	159186089	159186089	G	C	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	missense	c.513	p.K171N	1	NULL	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
PKP4	8502	genome.wustl.edu	36	2	159190040	159190040	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	159190040	159190040	G	A	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	silent	c.1008	p.S336	0.98	NULL	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
PKP4	8502	genome.wustl.edu	36	2	159227670	159227670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	159227670	159227670	G	A	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	missense	c.2227	p.V743M	1	"HMMSmart_SM00185,superfamily_ARM repeat"	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
BAZ2B	29994	genome.wustl.edu	36	2	159948437	159948437	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	159948437	159948437	A	T	SNP	BAZ2B	NM_013450	human	genbank	54_36p	-1	validated	missense	c.3687	p.S1229R	1	NULL	"superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
MYCN	4613	genome.wustl.edu	36	2	16003348	16003348	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	16003348	16003348	C	T	SNP	MYCN	NM_005378	human	genbank	54_36p	1	reviewed	missense	c.1073	p.P358L	0.99	HMMPfam_Myc_N	"HMMPfam_Myc_N,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
LOC643194	643194	genome.wustl.edu	36	2	161846005	161846005	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	161846005	161846005	G	C	SNP	LOC643194	XM_931396	human	genbank	54_36p	-1	model	missense	c.200	p.S67C	0	NULL	NULL	-	no_errors
LOC643194	643194	genome.wustl.edu	36	2	161846027	161846027	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	161846027	161846027	C	A	SNP	LOC643194	XM_931396	human	genbank	54_36p	-1	model	missense	c.178	p.A60S	0	NULL	NULL	-	no_errors
LOC728220	728220	genome.wustl.edu	36	2	161846670	161846671	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	161846670	161846671	-	G	INS	LOC728220	XM_001126897	human	genbank	54_36p	1	model	frame_shift_ins	c.39_40	p.L13fs	0.974:0.963	NULL	NULL	-	no_errors
TBR1	10716	genome.wustl.edu	36	2	161981629	161981629	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	161981629	161981629	C	T	SNP	TBR1	NM_006593	human	genbank	54_36p	1	reviewed	silent	c.462	p.N154	1	NULL	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
FAP	2191	genome.wustl.edu	36	2	162767902	162767902	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	162767902	162767902	C	G	SNP	FAP	NM_004460	human	genbank	54_36p	-1	reviewed	splice_site	c.1048-1	e13-1	1	-	-	-	no_errors
FAP	2191	genome.wustl.edu	36	2	162782770	162782770	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	162782770	162782770	G	A	SNP	FAP	NM_004460	human	genbank	54_36p	-1	reviewed	missense	c.734	p.P245L	1	"superfamily_SSF82171,HMMPfam_DPPIV_N"	"superfamily_SSF82171,HMMPfam_DPPIV_N,superfamily_SSF53474,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER"	-	no_errors
GRB14	2888	genome.wustl.edu	36	2	165057926	165057926	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	165057926	165057926	C	A	SNP	GRB14	NM_004490	human	genbank	54_36p	-1	reviewed	missense	c.1489	p.G497C	1	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	"HMMPfam_RA,HMMSmart_RA,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_BPS,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	-	no_errors
GRB14	2888	genome.wustl.edu	36	2	165067068	165067068	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	165067068	165067068	A	T	SNP	GRB14	NM_004490	human	genbank	54_36p	-1	reviewed	missense	c.1047	p.N349K	1	NULL	"HMMPfam_RA,HMMSmart_RA,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_PH,HMMSmart_PH,HMMPfam_BPS,superfamily_SSF50729,superfamily_SSF55550"	-	no_errors
GRB14	2888	genome.wustl.edu	36	2	165112482	165112482	+	Silent	SNP	G	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	2	165112482	165112482	G	A	SNP	GRB14	NM_004490	human	genbank	54_36p	-1	reviewed	silent	c.415	p.L139	1	"HMMPfam_RA,HMMSmart_RA"	"HMMPfam_RA,HMMSmart_RA,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_PH,HMMSmart_PH,HMMPfam_BPS,superfamily_SSF50729,superfamily_SSF55550"	-	no_errors
COBLL1	22837	genome.wustl.edu	36	2	165267892	165267892	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	165267892	165267892	C	A	SNP	COBLL1	NM_014900	human	genbank	54_36p	-1	validated	missense	c.1310	p.G437V	0.98	NULL	HMMPfam_Cobl	-	no_errors
SLC38A11	151258	genome.wustl.edu	36	2	165504213	165504213	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	165504213	165504213	A	T	SNP	SLC38A11	NM_173512	human	genbank	54_36p	-1	provisional	missense	c.296	p.L99H	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SCN3A	6328	genome.wustl.edu	36	2	165702870	165702870	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	165702870	165702870	A	T	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	missense	c.2156	p.L719H	1	NULL	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
SCN2A	6326	genome.wustl.edu	36	2	165878420	165878420	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	165878420	165878420	C	T	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	missense	c.1079	p.P360L	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN2A	6326	genome.wustl.edu	36	2	165878837	165878837	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	165878837	165878837	G	A	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	silent	c.1356	p.Q452	1	NULL	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
TTC21B	79809	genome.wustl.edu	36	2	166478345	166478345	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166478345	166478345	G	T	SNP	TTC21B	NM_024753	human	genbank	54_36p	-1	validated	nonsense	c.2196	p.Y732*	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	-	no_errors
SCN1A	6323	genome.wustl.edu	36	2	166557083	166557083	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166557083	166557083	T	A	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	missense	c.4915	p.I1639F	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ,PatternScan_RIBONUCLEASE_P"	-	no_errors
SCN1A	6323	genome.wustl.edu	36	2	166560768	166560768	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166560768	166560768	C	T	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	splice_site	c.4548+1	e24+1	1	-	-	-	no_errors
SCN1A	6323	genome.wustl.edu	36	2	166560775	166560775	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166560775	166560775	T	A	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	silent	c.4542	p.R1514	1	superfamily_SSF81324	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324"	-	no_errors
SCN1A	6323	genome.wustl.edu	36	2	166608698	166608698	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166608698	166608698	G	A	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	silent	c.1770	p.F590	1	NULL	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324"	-	no_errors
SCN9A	6335	genome.wustl.edu	36	2	166816635	166816635	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166816635	166816635	T	A	SNP	SCN9A	NM_002977	human	genbank	54_36p	-1	validated	missense	c.3325	p.N1109Y	0.01	HMMPfam_Na_trans_assoc	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN9A	6335	genome.wustl.edu	36	2	166837176	166837176	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166837176	166837176	C	T	SNP	SCN9A	NM_002977	human	genbank	54_36p	-1	validated	silent	c.3297	p.S1099	0.98	HMMPfam_Na_trans_assoc	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN9A	6335	genome.wustl.edu	36	2	166851301	166851301	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	166851301	166851301	T	A	SNP	SCN9A	NM_002977	human	genbank	54_36p	-1	validated	missense	c.1393	p.T465S	0.92	NULL	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
XIRP2	129446	genome.wustl.edu	36	2	167808566	167808582	+	Frame_Shift_Del	DEL	TAAGGCAAAGTGGTTAT	TAAGGCAAAGTGGTTAT	-	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	TAAGGCAAAGTGGTTAT	TAAGGCAAAGTGGTTAT	TAAGGCAAAGTGGTTAT	-	TAAGGCAAAGTGGTTAT	TAAGGCAAAGTGGTTAT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	167808566	167808582	TAAGGCAAAGTGGTTAT	-	DEL	XIRP2	NM_152381	human	genbank	54_36p	1	validated	frame_shift_del	c.2418_2434	p.K807fs	0.352:0.340:0.265:0.279:0.696:0.902:0.929:0.997:0.996:0.996:1.000:1.000:1.000:1.000:1.000:0.987:1.000	HMMPfam_Xin	HMMPfam_Xin	"(deletion:cds_exon[167807325,167816703])"	no_errors
XIRP2	129446	genome.wustl.edu	36	2	167813024	167813024	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	167813024	167813024	A	G	SNP	XIRP2	NM_152381	human	genbank	54_36p	1	validated	silent	c.6876	p.P2292	1	NULL	HMMPfam_Xin	-	no_errors
XIRP2	129446	genome.wustl.edu	36	2	167815927	167815927	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	167815927	167815927	A	G	SNP	XIRP2	NM_152381	human	genbank	54_36p	1	validated	missense	c.9779	p.E3260G	1	NULL	HMMPfam_Xin	-	no_errors
B3GALT1	8708	genome.wustl.edu	36	2	168433921	168433921	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	168433921	168433921	A	G	SNP	B3GALT1	NM_020981	human	genbank	54_36p	1	reviewed	silent	c.126	p.T42	0.8	NULL	HMMPfam_Galactosyl_T	-	no_errors
ABCB11	8647	genome.wustl.edu	36	2	169500012	169500012	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	169500012	169500012	G	A	SNP	ABCB11	NM_003742	human	genbank	54_36p	-1	reviewed	missense	c.2984	p.A995V	1	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCB11	8647	genome.wustl.edu	36	2	169509662	169509662	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	2	169509662	169509662	A	G	SNP	ABCB11	NM_003742	human	genbank	54_36p	-1	reviewed	missense	c.2399	p.L800P	0.99	"HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169697435	169697435	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	169697435	169697435	C	G	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	silent	c.13623	p.V4541	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169730764	169730764	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	169730764	169730764	A	C	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.11682	p.N3894K	1	"HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169741183	169741183	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	169741183	169741183	A	C	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.10555	p.C3519G	1	"HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169742768	169742768	+	Missense_Mutation	SNP	T	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	C	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	2	169742768	169742768	T	C	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.10184	p.E3395G	1	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169752926	169752926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	169752926	169752926	C	T	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.9128	p.R3043H	0.61	"HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	genome.wustl.edu	36	2	169837754	169837754	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	169837754	169837754	T	A	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.2045	p.N682I	1	"HMMSmart_EGF,superfamily_Grow_fac_recept,superfamily_SSF57196"	###############################################################################################################################################################################################################################################################	-	no_errors
FASTKD1	79675	genome.wustl.edu	36	2	170102046	170102046	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	170102046	170102046	C	T	SNP	FASTKD1	NM_024622	human	genbank	54_36p	-1	validated	missense	c.2125	p.E709K	1	HMMPfam_FAST_2	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
PPIG	9360	genome.wustl.edu	36	2	170201593	170201593	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	170201593	170201593	A	G	SNP	PPIG	NM_004792	human	genbank	54_36p	1	validated	missense	c.1579	p.S527G	0.93	NULL	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
METTL8	79828	genome.wustl.edu	36	2	171904158	171904160	+	In_Frame_Del	DEL	ATG	ATG	-	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	ATG	ATG	ATG	-	ATG	ATG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	171904158	171904160	ATG	-	DEL	METTL8	NM_024770	human	genbank	54_36p	-1	validated	in_frame_del	c.238_236	p.S79in_frame_del	0.001:0.001:0.016	superfamily_SSF53335	"superfamily_SSF53335,HMMPfam_Methyltransf_12"	"(deletion:cds_exon[171903940,171904310])"	no_errors
DYNC1I2	1781	genome.wustl.edu	36	2	172277531	172277531	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	172277531	172277531	A	T	SNP	DYNC1I2	NM_001378	human	genbank	54_36p	1	provisional	missense	c.344	p.H115L	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
HAT1	8520	genome.wustl.edu	36	2	172552464	172552464	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	172552464	172552464	C	T	SNP	HAT1	NM_003642	human	genbank	54_36p	1	reviewed	missense	c.1034	p.A345V	1	NULL	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Hat1_N"	-	no_errors
ITGA6	3655	genome.wustl.edu	36	2	173052679	173052679	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	173052679	173052679	C	A	SNP	ITGA6	NM_001079818	human	genbank	54_36p	1	reviewed	missense	c.1453	p.Q485K	1	"HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA"	-	no_errors
CDCA7	83879	genome.wustl.edu	36	2	173938520	173938520	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	173938520	173938520	A	G	SNP	CDCA7	NM_031942	human	genbank	54_36p	1	reviewed	missense	c.989	p.E330G	0.99	NULL	HMMPfam_zf-4CXXC_R1	-	no_errors
LOC643997	643997	genome.wustl.edu	36	2	174058986	174058986	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	174058986	174058986	G	C	SNP	LOC643997	XM_292963	human	genbank	54_36p	-1	model	silent	c.351	p.A117	1	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase"	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase"	-	no_errors
LOC388925	388925	genome.wustl.edu	36	2	17430380	17430380	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	17430380	17430380	G	T	SNP	LOC388925	XR_016133	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CHRNA1	1134	genome.wustl.edu	36	2	175326448	175326448	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	175326448	175326448	G	T	SNP	CHRNA1	ENST00000409323	human	ensembl	54_36p	-1	known	nonsense	c.807	p.C269*	0	NULL	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
CHN1	1123	genome.wustl.edu	36	2	175488084	175488084	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	175488084	175488084	A	T	SNP	CHN1	NM_001025201	human	genbank	54_36p	-1	reviewed	missense	c.208	p.Y70N	1	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
EVX2	344191	genome.wustl.edu	36	2	176655383	176655383	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	176655383	176655383	C	A	SNP	EVX2	NM_001080458	human	genbank	54_36p	-1	provisional	silent	c.468	p.S156	0.05	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXD10	3236	genome.wustl.edu	36	2	176691930	176691930	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	176691930	176691930	G	A	SNP	HOXD10	NM_002148	human	genbank	54_36p	1	reviewed	missense	c.748	p.E250K	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HNRNPA3	220988	genome.wustl.edu	36	2	177790742	177790742	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	177790742	177790742	G	T	SNP	HNRNPA3	NM_194247	human	genbank	54_36p	1	validated	missense	c.884	p.G295V	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
PDE11A	50940	genome.wustl.edu	36	2	178202430	178202430	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	178202430	178202430	G	T	SNP	PDE11A	NM_016953	human	genbank	54_36p	-1	reviewed	missense	c.2753	p.A918D	0.21	NULL	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
LOC728664	728664	genome.wustl.edu	36	2	178570957	178570957	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	178570957	178570957	C	A	SNP	LOC728664	XR_015711	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PDE11A	50940	genome.wustl.edu	36	2	178587324	178587324	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	178587324	178587324	G	A	SNP	PDE11A	NM_016953	human	genbank	54_36p	-1	reviewed	missense	c.1022	p.A341V	1	"HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like"	"HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_SM00065,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like"	-	no_errors
MSGN1	343930	genome.wustl.edu	36	2	17861525	17861525	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	17861525	17861525	G	A	SNP	MSGN1	NM_001105569	human	genbank	54_36p	1	inferred	missense	c.259	p.A87T	0	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
PDE11A	50940	genome.wustl.edu	36	2	178644726	178644726	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	178644726	178644726	C	T	SNP	PDE11A	NM_016953	human	genbank	54_36p	-1	reviewed	missense	c.685	p.V229I	1	"HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like"	"HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_SM00065,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like"	-	no_errors
PLEKHA3	65977	genome.wustl.edu	36	2	179058628	179058628	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179058628	179058628	T	A	SNP	PLEKHA3	NM_019091	human	genbank	54_36p	1	validated	missense	c.55	p.W19R	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
CCDC141	285025	genome.wustl.edu	36	2	179426577	179426577	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179426577	179426577	T	A	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	missense	c.1355	p.D452V	1	NULL	HMMPfam_I-set	-	no_errors
CCDC141	285025	genome.wustl.edu	36	2	179428502	179428502	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179428502	179428502	C	T	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	silent	c.1152	p.R384	1	NULL	HMMPfam_I-set	-	no_errors
KCNS3	3790	genome.wustl.edu	36	2	17977146	17977146	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	17977146	17977146	G	A	SNP	KCNS3	NM_002252	human	genbank	54_36p	1	reviewed	missense	c.1390	p.D464N	0.32	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
UBE2E3	10477	genome.wustl.edu	36	2	181555080	181555080	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	181555080	181555080	G	T	SNP	UBE2E3	NM_006357	human	genbank	54_36p	1	reviewed	silent	c.66	p.A22	0.66	NULL	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1"	-	no_errors
ITGA4	3676	genome.wustl.edu	36	2	182068837	182068837	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	182068837	182068837	G	T	SNP	ITGA4	NM_000885	human	genbank	54_36p	1	reviewed	nonsense	c.1468	p.G490*	1	"HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
CERKL	375298	genome.wustl.edu	36	2	182229916	182229916	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	182229916	182229916	C	T	SNP	CERKL	NM_201548	human	genbank	54_36p	-1	validated	silent	c.63	p.A21	0.23	NULL	HMMPfam_DAGK_cat	-	no_errors
NEUROD1	4760	genome.wustl.edu	36	2	182251718	182251718	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	182251718	182251718	T	A	SNP	NEUROD1	NM_002500	human	genbank	54_36p	-1	reviewed	nonsense	c.115	p.K39*	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
FRZB	2487	genome.wustl.edu	36	2	183411403	183411403	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	183411403	183411403	T	C	SNP	FRZB	NM_001463	human	genbank	54_36p	-1	validated	missense	c.776	p.Y259C	1	"superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	-	no_errors
FRZB	2487	genome.wustl.edu	36	2	183439182	183439182	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	183439182	183439182	G	T	SNP	FRZB	NM_001463	human	genbank	54_36p	-1	validated	missense	c.344	p.A115D	1	"superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063"	"superfamily_Frizzled cysteine-rich domain,superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643,HMMPfam_Fz,HMMSmart_SM00063"	-	no_errors
DUSP19	142679	genome.wustl.edu	36	2	183656523	183656523	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	183656523	183656523	A	G	SNP	DUSP19	NM_080876	human	genbank	54_36p	1	validated	missense	c.269	p.N90S	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMPfam_DSPc"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMPfam_DSPc"	-	no_errors
DUSP19	142679	genome.wustl.edu	36	2	183668509	183668509	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	183668509	183668509	T	C	SNP	DUSP19	NM_080876	human	genbank	54_36p	1	validated	missense	c.532	p.S178P	1	"HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
ZNF804A	91752	genome.wustl.edu	36	2	185508899	185508899	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	185508899	185508899	T	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	silent	c.531	p.T177	0	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NT5C1B	93034	genome.wustl.edu	36	2	18631851	18631851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	18631851	18631851	G	A	SNP	NT5C1B	NM_001002006	human	genbank	54_36p	-1	validated	missense	c.190	p.R64C	1	NULL	HMMPfam_5-nucleotidase	-	no_errors
ST13P2	344328	genome.wustl.edu	36	2	188398902	188398902	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	188398902	188398902	C	G	SNP	LOC344328	XR_017370	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ST13P2	344328	genome.wustl.edu	36	2	188399039	188399039	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	188399039	188399039	A	G	SNP	LOC344328	XR_017370	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC729141	729141	genome.wustl.edu	36	2	188800989	188800989	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	188800989	188800989	C	A	SNP	LOC729141	XR_015463	human	genbank	54_36p	1	model	rna	NULL	NULL	0.98	-	-	-	pseudogene
LOC729141	729141	genome.wustl.edu	36	2	188801234	188801234	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	188801234	188801234	C	T	SNP	LOC729141	XR_015463	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
GULP1	51454	genome.wustl.edu	36	2	189157286	189157286	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	189157286	189157286	T	C	SNP	GULP1	NM_016315	human	genbank	54_36p	1	validated	missense	c.659	p.I220T	1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
COL3A1	1281	genome.wustl.edu	36	2	189564486	189564486	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	189564486	189564486	G	A	SNP	COL3A1	NM_000090	human	genbank	54_36p	1	reviewed	missense	c.881	p.G294E	1	HMMPfam_Collagen	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL3A1	1281	genome.wustl.edu	36	2	189581976	189581976	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	189581976	189581976	G	A	SNP	COL3A1	NM_000090	human	genbank	54_36p	1	reviewed	missense	c.3607	p.A1203T	0.29	NULL	"HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen"	-	no_errors
COL5A2	1290	genome.wustl.edu	36	2	189607183	189607183	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	189607183	189607183	C	T	SNP	COL5A2	NM_000393	human	genbank	54_36p	-1	reviewed	missense	c.4358	p.R1453Q	1	"HMMSmart_COLFI,HMMPfam_COLFI"	"HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI"	-	no_errors
KRT18P19	339781	genome.wustl.edu	36	2	189885098	189885098	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	189885098	189885098	A	T	SNP	KRT18P19	XR_016833	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.98	-	-	-	pseudogene
MYT1L	23040	genome.wustl.edu	36	2	1900017	1900017	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	1900017	1900017	C	G	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	missense	c.1579	p.G527R	1	"superfamily_SSF103637,HMMPfam_zf-C2HC"	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1"	-	no_errors
ASNSD1	54529	genome.wustl.edu	36	2	190239831	190239831	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	190239831	190239831	C	A	SNP	ASNSD1	NM_019048	human	genbank	54_36p	1	validated	missense	c.728	p.P243H	1	NULL	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_Asn_synthase"	-	no_errors
ASNSD1	54529	genome.wustl.edu	36	2	190240088	190240088	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	190240088	190240088	G	T	SNP	ASNSD1	NM_019048	human	genbank	54_36p	1	validated	missense	c.985	p.G329C	1	"HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like"	"HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)"	-	no_errors
ANKAR	150709	genome.wustl.edu	36	2	190310768	190310768	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	190310768	190310768	C	G	SNP	ANKAR	NM_144708	human	genbank	54_36p	1	provisional	missense	c.3325	p.L1109V	1	superfamily_ARM repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
MYT1L	23040	genome.wustl.edu	36	2	1905091	1905091	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	1905091	1905091	T	A	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	missense	c.1457	p.H486L	1	NULL	"HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1,superfamily_SSF103637"	-	no_errors
MYT1L	23040	genome.wustl.edu	36	2	1905837	1905837	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	1905837	1905837	A	C	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	missense	c.711	p.S237R	0.05	NULL	"HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1,superfamily_SSF103637"	-	no_errors
INPP1	3628	genome.wustl.edu	36	2	190942166	190942166	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	190942166	190942166	G	T	SNP	INPP1	NM_002194	human	genbank	54_36p	1	reviewed	missense	c.559	p.G187C	1	"superfamily_Carbohydrate phosphatase,HMMPfam_Inositol_P"	"superfamily_Carbohydrate phosphatase,HMMPfam_Inositol_P,PatternScan_IMP_1,PatternScan_IMP_2"	-	no_errors
GLS	2744	genome.wustl.edu	36	2	191527599	191527599	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	191527599	191527599	C	G	SNP	GLS	NM_014905	human	genbank	54_36p	1	validated	missense	c.1757	p.S586C	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
STAT1	6772	genome.wustl.edu	36	2	191547839	191547839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	191547839	191547839	C	G	SNP	STAT1	NM_007315	human	genbank	54_36p	-1	reviewed	missense	c.2200	p.V734L	1	NULL	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2"	-	no_errors
STAT4	6775	genome.wustl.edu	36	2	191630994	191630994	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	191630994	191630994	G	A	SNP	STAT4	NM_003151	human	genbank	54_36p	-1	reviewed	missense	c.1201	p.H401Y	1	"HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd"	"superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMPfam_SH2,HMMSmart_SH2"	-	no_errors
SDPR	8436	genome.wustl.edu	36	2	192419516	192419516	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	192419516	192419516	C	T	SNP	SDPR	NM_004657	human	genbank	54_36p	-1	reviewed	silent	c.381	p.A127	0.58	NULL	NULL	-	no_errors
DNAH7	56171	genome.wustl.edu	36	2	196457735	196457735	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	196457735	196457735	C	A	SNP	DNAH7	NM_018897	human	genbank	54_36p	-1	validated	missense	c.5582	p.C1861F	1	NULL	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT"	-	no_errors
HECW2	57520	genome.wustl.edu	36	2	196880187	196880187	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	196880187	196880187	G	A	SNP	HECW2	NM_020760	human	genbank	54_36p	-1	provisional	silent	c.2601	p.R867	1	NULL	"HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HECW2	57520	genome.wustl.edu	36	2	196892797	196892797	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	196892797	196892797	G	A	SNP	HECW2	NM_020760	human	genbank	54_36p	-1	provisional	silent	c.1062	p.D354	0.99	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
HECW2	57520	genome.wustl.edu	36	2	197006214	197006214	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	197006214	197006214	C	T	SNP	HECW2	NM_020760	human	genbank	54_36p	-1	provisional	missense	c.179	p.S60N	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
PGAP1	80055	genome.wustl.edu	36	2	197466198	197466198	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	197466198	197466198	T	C	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	missense	c.944	p.K315R	1	NULL	"HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases"	-	no_errors
PGAP1	80055	genome.wustl.edu	36	2	197489528	197489528	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	197489528	197489528	T	C	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	silent	c.336	p.A112	1	"HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases"	"HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases"	-	no_errors
ANKRD44	91526	genome.wustl.edu	36	2	197574733	197574733	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	197574733	197574733	C	T	SNP	ANKRD44	NM_153697	human	genbank	54_36p	-1	provisional	silent	c.2349	p.L783	1	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKRD44	91526	genome.wustl.edu	36	2	197578804	197578804	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	197578804	197578804	C	T	SNP	ANKRD44	NM_153697	human	genbank	54_36p	-1	provisional	missense	c.2131	p.G711R	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
ANKRD44	91526	genome.wustl.edu	36	2	197661757	197661757	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	197661757	197661757	G	A	SNP	ANKRD44	ENST00000282272	human	ensembl	54_36p	-1	known	silent	c.1149	p.H383	1	superfamily_Ankyrin repeat	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_stop_codon
BOLL	66037	genome.wustl.edu	36	2	198339554	198339554	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	198339554	198339554	A	C	SNP	BOLL	NM_197970	human	genbank	54_36p	-1	validated	missense	c.535	p.S179A	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
BOLL	66037	genome.wustl.edu	36	2	198354767	198354767	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	198354767	198354767	A	G	SNP	BOLL	NM_197970	human	genbank	54_36p	-1	validated	missense	c.89	p.L30S	1	superfamily_SSF54928	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
SATB2	23314	genome.wustl.edu	36	2	199845581	199845581	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	199845581	199845581	C	T	SNP	SATB2	NM_015265	human	genbank	54_36p	-1	validated	silent	c.1800	p.A600	0.75	NULL	"HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox"	-	no_errors
WDR35	57539	genome.wustl.edu	36	2	20017094	20017094	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	20017094	20017094	C	T	SNP	WDR35	NM_001006657	human	genbank	54_36p	-1	reviewed	missense	c.1415	p.R472Q	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
SPATS2L	26010	genome.wustl.edu	36	2	200992426	200992426	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	200992426	200992426	T	A	SNP	LOC26010	NM_001100422	human	genbank	54_36p	1	validated	missense	c.407	p.I136K	0	HMMPfam_DUF1387	HMMPfam_DUF1387	-	no_errors
AOX1	316	genome.wustl.edu	36	2	201182370	201182370	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	201182370	201182370	T	G	SNP	AOX1	NM_001159	human	genbank	54_36p	1	reviewed	missense	c.1141	p.L381V	0	"superfamily_FAD-binding domain,HMMPfam_FAD_binding_5"	###############################################################################################################################################################################################################################################################	-	no_errors
PPIL3	53938	genome.wustl.edu	36	2	201460795	201460795	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	201460795	201460795	C	T	SNP	PPIL3	NM_131916	human	genbank	54_36p	-1	reviewed	splice_site	c.1-1	e1-1	0	-	-	-	no_errors
FAM126B	285172	genome.wustl.edu	36	2	201554792	201554792	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	201554792	201554792	C	A	SNP	FAM126B	NM_173822	human	genbank	54_36p	-1	validated	missense	c.1039	p.A347S	1	NULL	HMMPfam_Hyccin	-	no_errors
CASP10	843	genome.wustl.edu	36	2	201778884	201778884	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	201778884	201778884	C	T	SNP	CASP10	NM_032977	human	genbank	54_36p	1	reviewed	silent	c.756	p.V252	0	NULL	"superfamily_DEATH_like,HMMSmart_DED,HMMPfam_DED,superfamily_SSF52129,HMMSmart_CASc,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
ALS2CR11	151254	genome.wustl.edu	36	2	202138809	202138809	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	202138809	202138809	G	T	SNP	ALS2CR11	NM_152525	human	genbank	54_36p	-1	validated	missense	c.865	p.P289T	1	NULL	NULL	-	no_errors
MPP4	58538	genome.wustl.edu	36	2	202258973	202258973	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	202258973	202258973	G	C	SNP	MPP4	NM_033066	human	genbank	54_36p	-1	reviewed	missense	c.406	p.P136A	1	"HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
CDK15	65061	genome.wustl.edu	36	2	202408661	202408661	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	202408661	202408661	G	A	SNP	PFTK2	NM_139158	human	genbank	54_36p	1	provisional	missense	c.628	p.V210M	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SDC1	6382	genome.wustl.edu	36	2	20267218	20267218	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	20267218	20267218	C	A	SNP	SDC1	NM_001006946	human	genbank	54_36p	-1	reviewed	missense	c.464	p.R155M	0.06	HMMPfam_Syndecan	"HMMPfam_Syndecan,HMMSmart_4.1m,PatternScan_SYNDECAN"	-	no_errors
SDC1	6382	genome.wustl.edu	36	2	20268626	20268626	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	20268626	20268626	C	G	SNP	SDC1	NM_001006946	human	genbank	54_36p	-1	reviewed	missense	c.107	p.G36A	0.74	HMMPfam_Syndecan	"HMMPfam_Syndecan,PatternScan_SYNDECAN,HMMSmart_4.1m"	-	no_errors
SDC1	6382	genome.wustl.edu	36	2	20268660	20268660	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	20268660	20268660	C	G	SNP	SDC1	NM_001006946	human	genbank	54_36p	-1	reviewed	missense	c.73	p.V25L	0.01	HMMPfam_Syndecan	"HMMPfam_Syndecan,PatternScan_SYNDECAN,HMMSmart_4.1m"	-	no_errors
LOC151457	151457	genome.wustl.edu	36	2	20303334	20303334	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	20303334	20303334	C	A	SNP	LOC151457	XR_016242	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
BMPR2	659	genome.wustl.edu	36	2	203092015	203092015	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	203092015	203092015	C	A	SNP	BMPR2	NM_001204	human	genbank	54_36p	1	reviewed	missense	c.847	p.P283T	1	"superfamily_Kinase_like,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ST,superfamily_SSF57302,HMMPfam_Activin_recp,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
BMPR2	659	genome.wustl.edu	36	2	203132718	203132718	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	203132718	203132718	G	C	SNP	BMPR2	NM_001204	human	genbank	54_36p	1	reviewed	missense	c.2921	p.R974P	1	NULL	"HMMPfam_Activin_recp,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF57302"	-	no_errors
FAM117B	150864	genome.wustl.edu	36	2	203338550	203338550	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	203338550	203338550	A	T	SNP	FAM117B	NM_173511	human	genbank	54_36p	1	validated	nonsense	c.856	p.K286*	1	NULL	NULL	-	no_errors
ALS2CR8	79800	genome.wustl.edu	36	2	203515797	203515797	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	203515797	203515797	T	C	SNP	ALS2CR8	NM_001104586	human	genbank	54_36p	1	validated	silent	c.168	p.N56	0.02	NULL	NULL	-	no_errors
PUM2	23369	genome.wustl.edu	36	2	20371776	20371776	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	20371776	20371776	A	G	SNP	PUM2	NM_015317	human	genbank	54_36p	-1	provisional	missense	c.569	p.L190S	1	NULL	"superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025"	-	no_errors
RAPH1	65059	genome.wustl.edu	36	2	204028509	204028509	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	204028509	204028509	C	T	SNP	RAPH1	NM_213589	human	genbank	54_36p	-1	validated	missense	c.1198	p.E400K	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"HMMSmart_SM00314,HMMPfam_RA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
RHOB	388	genome.wustl.edu	36	2	20511087	20511087	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	20511087	20511087	T	G	SNP	RHOB	NM_004040	human	genbank	54_36p	1	validated	missense	c.380	p.V127G	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174"	-	no_errors
NRP2	8828	genome.wustl.edu	36	2	206349354	206349354	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	206349354	206349354	C	T	SNP	NRP2	NM_018534	human	genbank	54_36p	1	reviewed	silent	c.2580	p.H860	1	NULL	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM"	-	no_errors
NDUFS1	4719	genome.wustl.edu	36	2	206711533	206711533	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	206711533	206711533	A	C	SNP	NDUFS1	NM_005006	human	genbank	54_36p	-1	reviewed	missense	c.1313	p.L438R	1	"superfamily_SSF53706,HMMPfam_Molybdopterin"	"PatternScan_2FE2S_FER_1,superfamily_Ferredoxin,HMMPfam_Fer2,PatternScan_COMPLEX1_75K_1,HMMPfam_NADH-G_4Fe-4S_3,PatternScan_COMPLEX1_75K_2,superfamily_SSF54862,PatternScan_COMPLEX1_75K_3,superfamily_SSF53706,HMMPfam_Molybdopterin,HMMPfam_DUF1982"	-	no_errors
ZDBF2	57683	genome.wustl.edu	36	2	206880159	206880159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	206880159	206880159	G	A	SNP	ZDBF2	NM_020923	human	genbank	54_36p	1	validated	missense	c.2662	p.E888K	0	NULL	HMMPfam_zf-DBF	-	no_errors
PIKFYVE	200576	genome.wustl.edu	36	2	208846602	208846602	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	208846602	208846602	G	C	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	missense	c.222	p.W74C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PIKFYVE	200576	genome.wustl.edu	36	2	208898536	208898536	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	208898536	208898536	C	A	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	missense	c.2756	p.P919H	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PIKFYVE	200576	genome.wustl.edu	36	2	208909874	208909874	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	208909874	208909874	C	G	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	missense	c.4588	p.L1530V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LOC402116	402116	genome.wustl.edu	36	2	209753098	209753098	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	209753098	209753098	G	T	SNP	LOC402116	XR_017081	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC402116	402116	genome.wustl.edu	36	2	209753507	209753507	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	209753507	209753507	G	C	SNP	LOC402116	XR_017081	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC402116	402116	genome.wustl.edu	36	2	209753827	209753827	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	209753827	209753827	A	G	SNP	LOC402116	XR_017081	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MAP2	4133	genome.wustl.edu	36	2	210226218	210226218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	210226218	210226218	C	G	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	missense	c.79	p.H27D	1	NULL	"HMMPfam_RII_binding_1,HMMPfam_MAP2_projctn,HMMPfam_Tubulin-binding,PatternScan_TAU_MAP"	-	no_errors
MAP2	4133	genome.wustl.edu	36	2	210267017	210267017	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	210267017	210267017	C	G	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	silent	c.1878	p.S626	0.85	HMMPfam_MAP2_projctn	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
APOB	338	genome.wustl.edu	36	2	21082364	21082364	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	21082364	21082364	C	G	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.10881	p.K3627N	1	NULL	"superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081"	-	no_errors
APOB	338	genome.wustl.edu	36	2	21086660	21086660	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	21086660	21086660	T	C	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.6585	p.K2195	0.01	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	genome.wustl.edu	36	2	21088665	21088665	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	21088665	21088665	A	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.4580	p.L1527H	0.04	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
CPS1	1373	genome.wustl.edu	36	2	211129805	211129805	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	211129805	211129805	G	A	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	missense	c.103	p.G35S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
APOB	338	genome.wustl.edu	36	2	21113540	21113540	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	21113540	21113540	C	G	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.630	p.G210	0.7	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions"	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	genome.wustl.edu	36	2	21114419	21114419	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	21114419	21114419	A	G	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.453	p.T151	0	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions"	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
CPS1	1373	genome.wustl.edu	36	2	211149360	211149360	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	211149360	211149360	C	G	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	silent	c.282	p.L94	0.99	"HMMPfam_CPSase_sm_chain,superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain"	###############################################################################################################################################################################################################################################################	-	no_errors
CPS1	1373	genome.wustl.edu	36	2	211168489	211168489	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	211168489	211168489	C	T	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	silent	c.1297	p.L433	1	"HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain"	###############################################################################################################################################################################################################################################################	-	no_errors
CPS1	1373	genome.wustl.edu	36	2	211185234	211185234	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	211185234	211185234	G	C	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	missense	c.2540	p.S847T	1	"HMMPfam_CPSase_L_D3,superfamily_Carbamoyl phosphate synthetase large subunit connection domain"	###############################################################################################################################################################################################################################################################	-	no_errors
SPAG16	79582	genome.wustl.edu	36	2	213937101	213937101	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	213937101	213937101	T	C	SNP	SPAG16	NM_024532	human	genbank	54_36p	1	validated	silent	c.819	p.G273	0.1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ABCA12	26154	genome.wustl.edu	36	2	215548940	215548940	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	215548940	215548940	A	G	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	missense	c.5195	p.I1732T	0.96	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA12	26154	genome.wustl.edu	36	2	215570674	215570674	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	215570674	215570674	C	G	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	missense	c.3284	p.R1095P	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ATIC	471	genome.wustl.edu	36	2	215911798	215911798	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	215911798	215911798	C	T	SNP	ATIC	NM_004044	human	genbank	54_36p	1	validated	missense	c.1150	p.L384F	1	"HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly"	"superfamily_SSF52335,HMMPfam_MGS,HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly"	-	no_errors
RPL37A	6168	genome.wustl.edu	36	2	217072952	217072952	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	217072952	217072952	C	T	SNP	RPL37A	NM_000998	human	genbank	54_36p	1	reviewed	silent	c.168	p.H56	1	"HMMPfam_Ribosomal_L37ae,superfamily_Zn-binding ribosomal proteins"	"HMMPfam_Ribosomal_L37ae,superfamily_Zn-binding ribosomal proteins"	-	no_errors
TNS1	7145	genome.wustl.edu	36	2	218458127	218458127	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	218458127	218458127	C	A	SNP	TNS1	NM_022648	human	genbank	54_36p	-1	reviewed	missense	c.747	p.K249N	1	"HMMPfam_PTEN_C2,superfamily_C2_CaLB"	"superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB"	-	no_errors
GPBAR1	151306	genome.wustl.edu	36	2	218836429	218836429	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	218836429	218836429	C	G	SNP	GPBAR1	NM_001077191	human	genbank	54_36p	1	reviewed	missense	c.737	p.S246C	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
AAMP	14	genome.wustl.edu	36	2	218839034	218839034	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	218839034	218839034	T	A	SNP	AAMP	NM_001087	human	genbank	54_36p	-1	reviewed	nonsense	c.760	p.K254*	0.99	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
SLC11A1	6556	genome.wustl.edu	36	2	218962860	218962860	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	218962860	218962860	C	T	SNP	SLC11A1	NM_000578	human	genbank	54_36p	1	reviewed	silent	c.819	p.R273	0.01	HMMPfam_Nramp	HMMPfam_Nramp	-	no_errors
SLC11A1	6556	genome.wustl.edu	36	2	218967704	218967704	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	218967704	218967704	C	A	SNP	SLC11A1	NM_000578	human	genbank	54_36p	1	reviewed	silent	c.1494	p.G498	0.05	NULL	HMMPfam_Nramp	-	no_errors
PLCD4	84812	genome.wustl.edu	36	2	219205133	219205133	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219205133	219205133	A	G	SNP	PLCD4	NM_032726	human	genbank	54_36p	1	provisional	missense	c.1303	p.K435E	1	"HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases"	###############################################################################################################################################################################################################################################################	-	no_errors
CDK5R2	8941	genome.wustl.edu	36	2	219533673	219533673	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219533673	219533673	G	T	SNP	CDK5R2	NM_003936	human	genbank	54_36p	1	reviewed	missense	c.887	p.R296L	1	"HMMPfam_CDK5_activator,superfamily_Cyclin_like"	"HMMPfam_CDK5_activator,superfamily_Cyclin_like"	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219600667	219600667	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219600667	219600667	A	C	SNP	CCDC108	NM_194302	human	genbank	54_36p	-1	provisional	silent	c.2160	p.P720	0	NULL	"PatternScan_MGMT,superfamily_PapD-like"	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219608429	219608429	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219608429	219608429	A	T	SNP	CCDC108	NM_152389	human	genbank	54_36p	-1	provisional	missense	c.364	p.S122T	0	NULL	NULL	-	no_errors
CCDC108	255101	genome.wustl.edu	36	2	219608465	219608465	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219608465	219608465	G	A	SNP	CCDC108	NM_194302	human	genbank	54_36p	-1	provisional	missense	c.523	p.L175F	0.53	NULL	"PatternScan_MGMT,superfamily_PapD-like"	-	no_errors
TUBA4A	7277	genome.wustl.edu	36	2	219824013	219824013	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219824013	219824013	C	G	SNP	TUBA4A	NM_006000	human	genbank	54_36p	-1	reviewed	missense	c.652	p.D218H	1	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin"	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
TUBA4A	7277	genome.wustl.edu	36	2	219824670	219824670	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219824670	219824670	C	T	SNP	TUBA4A	NM_006000	human	genbank	54_36p	-1	reviewed	missense	c.236	p.R79Q	1	"HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like"	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
TUBA4B	80086	genome.wustl.edu	36	2	219844504	219844504	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219844504	219844504	G	A	SNP	TUBA4B	ENST00000295766	human	ensembl	54_36p	1	known	missense	c.565	p.V189M	1	HMMPfam_Tubulin_C	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,HMMPfam_Tubulin_C"	-	no_errors
PTPRN	5798	genome.wustl.edu	36	2	219871007	219871007	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	219871007	219871007	C	G	SNP	PTPRN	NM_002846	human	genbank	54_36p	-1	reviewed	silent	c.1731	p.V577	1	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
SPEG	10290	genome.wustl.edu	36	2	220017706	220017706	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	220017706	220017706	C	T	SNP	SPEG	NM_005876	human	genbank	54_36p	1	validated	missense	c.476	p.T159M	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SPEG	10290	genome.wustl.edu	36	2	220024122	220024154	+	In_Frame_Del	DEL	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	-	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	-	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	220024122	220024154	GTGTCCGCTGGAGAAGAGCCCCTAGAGGCCCCT	-	DEL	SPEG	NM_005876	human	genbank	54_36p	1	validated	in_frame_del	c.2134_2166	p.SAGEEPLEAPV713in_frame_del	1.000:1.000:1.000:1.000:0.997:0.463:0.956:0.951:0.626:0.998:0.999:0.997:1.000:1.000:0.993:1.000:1.000:1.000:1.000:1.000:0.885:0.893:0.939:0.950:1.000:1.000:1.000:1.000:1.000:0.961:0.995:0.991:0.073	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[220024102,220024245])"	no_errors
ACCN4	55515	genome.wustl.edu	36	2	220108219	220108219	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	220108219	220108219	G	T	SNP	ACCN4	NM_018674	human	genbank	54_36p	1	reviewed	missense	c.1539	p.M513I	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
INHA	3623	genome.wustl.edu	36	2	220148263	220148263	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	220148263	220148263	G	C	SNP	INHA	NM_002191	human	genbank	54_36p	1	reviewed	missense	c.872	p.C291S	1	"superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1"	"superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1"	-	no_errors
STK11IP	114790	genome.wustl.edu	36	2	220175042	220175042	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	220175042	220175042	C	T	SNP	STK11IP	ENST00000295641	human	ensembl	54_36p	1	known	missense	c.431	p.A144V	1	NULL	"superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1"	-	no_errors
SH3YL1	26751	genome.wustl.edu	36	2	221084	221084	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	221084	221084	T	C	SNP	SH3YL1	NM_015677	human	genbank	54_36p	-1	provisional	missense	c.353	p.Y118C	1	HMMPfam_DUF500	"HMMPfam_DUF500,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
KCNE4	23704	genome.wustl.edu	36	2	223626183	223626183	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	223626183	223626183	T	G	SNP	KCNE4	NM_080671	human	genbank	54_36p	1	validated	missense	c.391	p.S131A	0.42	NULL	HMMPfam_ISK_Channel	-	no_errors
SERPINE2	5270	genome.wustl.edu	36	2	224571223	224571223	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	224571223	224571223	C	T	SNP	SERPINE2	NM_006216	human	genbank	54_36p	-1	validated	missense	c.340	p.V114M	0.87	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093"	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
DOCK10	55619	genome.wustl.edu	36	2	225378178	225378178	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	225378178	225378178	G	A	SNP	DOCK10	NM_014689	human	genbank	54_36p	-1	validated	missense	c.4040	p.T1347M	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto"	-	no_errors
KIAA1486	57624	genome.wustl.edu	36	2	225981934	225981934	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	225981934	225981934	G	A	SNP	KIAA1486	NM_020864	human	genbank	54_36p	1	validated	missense	c.94	p.D32N	1	NULL	NULL	-	no_errors
KIAA1486	57624	genome.wustl.edu	36	2	225981947	225981947	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	225981947	225981947	T	C	SNP	KIAA1486	NM_020864	human	genbank	54_36p	1	validated	missense	c.107	p.I36T	1	NULL	NULL	-	no_errors
RHBDD1	84236	genome.wustl.edu	36	2	227487240	227487240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	227487240	227487240	A	G	SNP	RHBDD1	NM_032276	human	genbank	54_36p	1	provisional	missense	c.785	p.D262G	0.65	NULL	HMMPfam_Rhomboid	-	no_errors
COL4A4	1286	genome.wustl.edu	36	2	227633177	227633177	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	227633177	227633177	C	A	SNP	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	missense	c.2083	p.G695C	0.38	HMMPfam_Collagen	"HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like"	-	no_errors
COL4A4	1286	genome.wustl.edu	36	2	227667198	227667206	+	In_Frame_Del	DEL	GGAAGCCCA	GGAAGCCCA	-	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	GGAAGCCCA	GGAAGCCCA	GGAAGCCCA	-	GGAAGCCCA	GGAAGCCCA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	227667198	227667206	GGAAGCCCA	-	DEL	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1256_1248	p.LPG418in_frame_del	0.899:0.912:0.886:0.793:0.455:0.432:0.576:0.581:0.508	HMMPfam_Collagen	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	"(deletion:cds_exon[227667085,227667249])"	no_errors
AGFG1	3267	genome.wustl.edu	36	2	228126694	228126694	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	228126694	228126694	A	G	SNP	AGFG1	NM_004504	human	genbank	54_36p	1	reviewed	missense	c.1568	p.K523R	1	NULL	"HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap"	-	no_errors
SPHKAP	80309	genome.wustl.edu	36	2	228592495	228592495	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	228592495	228592495	A	G	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	missense	c.1319	p.V440A	0	NULL	HMMPfam_AKAP_110	-	no_errors
TRIP12	9320	genome.wustl.edu	36	2	230358756	230358756	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	230358756	230358756	G	A	SNP	TRIP12	NM_004238	human	genbank	54_36p	-1	provisional	silent	c.4830	p.G1610	1	"superfamily_HECT,HMMSmart_HECTc"	"superfamily_ARM-type_fold,HMMPfam_WWE,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
SLC16A14	151473	genome.wustl.edu	36	2	230619465	230619465	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	230619465	230619465	C	A	SNP	SLC16A14	NM_152527	human	genbank	54_36p	-1	provisional	silent	c.621	p.A207	0.98	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SP110	3431	genome.wustl.edu	36	2	230745064	230745064	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	230745064	230745064	T	A	SNP	SP110	NM_080424	human	genbank	54_36p	-1	reviewed	nonsense	c.1777	p.K593*	0.01	superfamily_Bromodomain	"HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
SP110	3431	genome.wustl.edu	36	2	230785783	230785783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	230785783	230785783	G	C	SNP	SP110	NM_080424	human	genbank	54_36p	-1	reviewed	missense	c.520	p.P174A	0.01	NULL	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
SP100	6672	genome.wustl.edu	36	2	231019810	231019812	+	In_Frame_Del	DEL	GAA	GAA	-	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	GAA	GAA	GAA	-	GAA	GAA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	231019810	231019812	GAA	-	DEL	SP100	NM_001080391	human	genbank	54_36p	1	validated	in_frame_del	c.472_474	p.E161in_frame_del	0.001:0.000:0.000	NULL	"HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	"(deletion:cds_exon[231019778,231019861])"	no_errors
SP100	6672	genome.wustl.edu	36	2	231114890	231114890	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	231114890	231114890	T	C	SNP	SP100	NM_001080391	human	genbank	54_36p	1	validated	silent	c.2443	p.L815	0.96	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain"	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
GPR55	9290	genome.wustl.edu	36	2	231483234	231483234	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	231483234	231483234	C	G	SNP	GPR55	NM_005683	human	genbank	54_36p	-1	validated	missense	c.688	p.A230P	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PSMD1	5707	genome.wustl.edu	36	2	231734360	231734360	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	231734360	231734360	G	T	SNP	PSMD1	NM_002807	human	genbank	54_36p	1	reviewed	missense	c.2281	p.V761F	1	HMMPfam_PC_rep	"HMMPfam_PC_rep,superfamily_ARM repeat"	-	no_errors
NCL	4691	genome.wustl.edu	36	2	232028561	232028561	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	232028561	232028561	G	A	SNP	NCL	NM_005381	human	genbank	54_36p	-1	reviewed	silent	c.1851	p.F617	1	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	"HMMPfam_FYDLN_acid,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
COPS7B	64708	genome.wustl.edu	36	2	232369216	232369216	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	232369216	232369216	A	G	SNP	COPS7B	NM_022730	human	genbank	54_36p	1	provisional	missense	c.484	p.I162V	1	HMMSmart_SM00088	"HMMPfam_PCI,HMMSmart_SM00088"	-	no_errors
ALPP	250	genome.wustl.edu	36	2	232951766	232951766	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	232951766	232951766	C	T	SNP	ALPP	NM_001632	human	genbank	54_36p	1	reviewed	missense	c.10	p.P4S	0.02	NULL	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE"	-	no_errors
GIGYF2	26058	genome.wustl.edu	36	2	233369150	233369150	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	233369150	233369150	C	A	SNP	GIGYF2	NM_001103147	human	genbank	54_36p	1	validated	nonsense	c.1677	p.Y559*	1	"superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF"	"superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF"	-	no_errors
NGEF	25791	genome.wustl.edu	36	2	233465877	233465877	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	233465877	233465877	G	T	SNP	NGEF	NM_019850	human	genbank	54_36p	-1	validated	missense	c.1117	p.Q373K	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
NGEF	25791	genome.wustl.edu	36	2	233467843	233467843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	233467843	233467843	C	A	SNP	NGEF	NM_019850	human	genbank	54_36p	-1	validated	missense	c.856	p.A286S	1	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
USP40	55230	genome.wustl.edu	36	2	234096600	234096600	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	234096600	234096600	C	G	SNP	USP40	NM_018218	human	genbank	54_36p	-1	validated	missense	c.1948	p.E650Q	0.02	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
UGT1A8	54576	genome.wustl.edu	36	2	234191249	234191249	+	Missense_Mutation	SNP	C	C	T	rs45504099	byFrequency	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	2	234191249	234191249	C	T	SNP	UGT1A8	NM_019076	human	genbank	54_36p	1	reviewed	missense	c.157	p.H53Y	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A10	54575	genome.wustl.edu	36	2	234210018	234210018	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	234210018	234210018	C	G	SNP	UGT1A10	NM_019075	human	genbank	54_36p	1	reviewed	missense	c.111	p.H37Q	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A9	54600	genome.wustl.edu	36	2	234245851	234245851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	234245851	234245851	G	A	SNP	UGT1A9	NM_021027	human	genbank	54_36p	1	reviewed	missense	c.532	p.E178K	0.01	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A9	54600	genome.wustl.edu	36	2	234246084	234246084	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	234246084	234246084	G	A	SNP	UGT1A9	NM_021027	human	genbank	54_36p	1	reviewed	silent	c.765	p.T255	0.01	"HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase"	"HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase"	-	no_errors
TRPM8	79054	genome.wustl.edu	36	2	234527354	234527355	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	GC	GC	GC	AT	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	234527354	234527355	GC	AT	DNP	TRPM8	NM_024080	human	genbank	54_36p	1	validated	missense	c.1195_1196	p.A399I	1.000:1.000	NULL	HMMPfam_Ion_trans	-	no_errors
SH3BP4	23677	genome.wustl.edu	36	2	235615550	235615550	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	235615550	235615550	G	A	SNP	SH3BP4	NM_014521	human	genbank	54_36p	1	reviewed	silent	c.1398	p.V466	0.8	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
AGAP1	116987	genome.wustl.edu	36	2	236482206	236482206	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	236482206	236482206	C	T	SNP	AGAP1	NM_001037131	human	genbank	54_36p	1	validated	missense	c.1241	p.T414M	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	###############################################################################################################################################################################################################################################################	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237908009	237908009	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	237908009	237908009	T	G	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	silent	c.9228	p.T3076	1	superfamily_Fibronectin type III	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237939079	237939079	+	Splice_Site	SNP	C	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	237939079	237939079	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	splice_site	c.5838+1	e11+1	1	-	-	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237942408	237942408	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	237942408	237942408	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.4437	p.Q1479H	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237945697	237945697	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	237945697	237945697	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	silent	c.3702	p.V1234	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
COL6A3	1293	genome.wustl.edu	36	2	237950203	237950203	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	237950203	237950203	T	C	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	silent	c.3021	p.P1007	0.12	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
MLPH	79083	genome.wustl.edu	36	2	238113861	238113861	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	238113861	238113861	G	C	SNP	MLPH	NM_024101	human	genbank	54_36p	1	reviewed	missense	c.1236	p.K412N	0	NULL	"superfamily_FYVE/PHD zinc finger,HMMPfam_MOBP"	-	no_errors
ATAD2B	54454	genome.wustl.edu	36	2	23834265	23834265	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	23834265	23834265	G	C	SNP	ATAD2B	NM_017552	human	genbank	54_36p	-1	validated	missense	c.3605	p.S1202C	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
RBM44	375316	genome.wustl.edu	36	2	238390960	238390960	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	238390960	238390960	G	A	SNP	RBM44	NM_001080504	human	genbank	54_36p	1	validated	missense	c.659	p.G220E	0	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
SCLY	51540	genome.wustl.edu	36	2	238656632	238656632	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	238656632	238656632	A	T	SNP	SCLY	NM_016510	human	genbank	54_36p	1	validated	missense	c.782	p.Y261F	1	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5"	-	no_errors
ILKAP	80895	genome.wustl.edu	36	2	238755558	238755558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	238755558	238755558	C	G	SNP	ILKAP	NM_030768	human	genbank	54_36p	-1	reviewed	missense	c.723	p.L241F	1	"superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG"	"superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG,PatternScan_PP2C"	-	no_errors
ILKAP	80895	genome.wustl.edu	36	2	238757087	238757087	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	238757087	238757087	C	T	SNP	ILKAP	NM_030768	human	genbank	54_36p	-1	reviewed	silent	c.660	p.T220	0.97	"HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C"	"PatternScan_PP2C,HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C"	-	no_errors
ILKAP	80895	genome.wustl.edu	36	2	238767691	238767691	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	238767691	238767691	A	G	SNP	ILKAP	NM_030768	human	genbank	54_36p	-1	reviewed	missense	c.142	p.F48L	1	NULL	"PatternScan_PP2C,HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C"	-	no_errors
ATAD2B	54454	genome.wustl.edu	36	2	23946050	23946050	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	23946050	23946050	T	C	SNP	ATAD2B	NM_017552	human	genbank	54_36p	-1	validated	missense	c.1063	p.R355G	1	NULL	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,PatternScan_BROMODOMAIN_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PRR21	643905	genome.wustl.edu	36	2	240630920	240630920	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	240630920	240630920	A	G	SNP	LOC643905	NM_001080835	human	genbank	54_36p	-1	predicted	silent	c.153	p.H51	0	NULL	NULL	-	no_errors
MFSD2B	388931	genome.wustl.edu	36	2	24092584	24092584	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	24092584	24092584	G	T	SNP	LOC388931	NM_001080473	human	genbank	54_36p	1	predicted	missense	c.277	p.A93S	0.97	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
MFSD2B	388931	genome.wustl.edu	36	2	24098077	24098077	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	24098077	24098077	T	A	SNP	LOC388931	NM_001080473	human	genbank	54_36p	1	predicted	missense	c.737	p.I246N	0.04	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
CAPN10	11132	genome.wustl.edu	36	2	241182798	241182798	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	241182798	241182798	A	G	SNP	CAPN10	NM_023083	human	genbank	54_36p	1	reviewed	silent	c.996	p.T332	1	superfamily_Cysteine proteinases	"HMMSmart_SM00230,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,superfamily_Calpain large subunit middle domain (domain III),HMMPfam_Calpain_III,HMMSmart_SM00720"	-	no_errors
PASK	23178	genome.wustl.edu	36	2	241725336	241725336	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	241725336	241725336	C	T	SNP	PASK	NM_015148	human	genbank	54_36p	-1	validated	missense	c.893	p.R298K	1	superfamily_PYP-like sensor domain (PAS domain)	"HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
C2orf85	285093	genome.wustl.edu	36	2	242463887	242463887	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	242463887	242463887	G	A	SNP	C2orf85	NM_173821	human	genbank	54_36p	1	validated	missense	c.1507	p.G503S	0.01	NULL	NULL	-	no_errors
ITSN2	50618	genome.wustl.edu	36	2	24287180	24287180	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	24287180	24287180	C	T	SNP	ITSN2	NM_006277	human	genbank	54_36p	-1	reviewed	silent	c.4227	p.A1409	0.52	superfamily_DBL homology domain (DH-domain)	###############################################################################################################################################################################################################################################################	-	no_errors
ADCY3	109	genome.wustl.edu	36	2	24904517	24904517	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	24904517	24904517	G	T	SNP	ADCY3	NM_004036	human	genbank	54_36p	-1	reviewed	nonsense	c.2190	p.Y730*	1	NULL	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310663	25310663	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	25310663	25310663	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2728	p.A910T	1	NULL	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1"	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25316788	25316788	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	25316788	25316788	G	A	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2209	p.L737F	1	"HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT"	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25323031	25323031	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	25323031	25323031	A	G	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.1241	p.F414S	1	superfamily_Tudor/PWWP/MBT	"HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT"	-	no_errors
KIF3C	3797	genome.wustl.edu	36	2	26057663	26057663	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	26057663	26057663	T	G	SNP	KIF3C	NM_002254	human	genbank	54_36p	-1	validated	missense	c.628	p.N210H	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_RIBOSOMAL_L2,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
HADHB	3032	genome.wustl.edu	36	2	26350074	26350074	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	26350074	26350074	C	T	SNP	HADHB	NM_000183	human	genbank	54_36p	1	reviewed	silent	c.306	p.I102	1	"superfamily_Thiolase-like,HMMPfam_Thiolase_N"	"superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3"	-	no_errors
OTOF	9381	genome.wustl.edu	36	2	26543219	26543219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	26543219	26543219	G	A	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.4367	p.S1456F	1	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB"	-	no_errors
KCNK3	3777	genome.wustl.edu	36	2	26804447	26804447	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	26804447	26804447	G	T	SNP	KCNK3	NM_002246	human	genbank	54_36p	1	reviewed	missense	c.692	p.G231V	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	-	no_errors
MAPRE3	22924	genome.wustl.edu	36	2	27098614	27098614	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27098614	27098614	A	G	SNP	MAPRE3	NM_012326	human	genbank	54_36p	1	reviewed	silent	c.24	p.T8	0.97	superfamily_Calponin-homology domain CH-domain	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMPfam_EB1"	-	no_errors
CAD	790	genome.wustl.edu	36	2	27294367	27294367	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27294367	27294367	G	C	SNP	CAD	NM_004341	human	genbank	54_36p	1	reviewed	missense	c.201	p.M67I	0.7	"superfamily_CP_synthsmall,HMMPfam_CPSase_sm_chain"	###############################################################################################################################################################################################################################################################	-	no_errors
CAD	790	genome.wustl.edu	36	2	27308418	27308418	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27308418	27308418	G	C	SNP	CAD	NM_004341	human	genbank	54_36p	1	reviewed	missense	c.2467	p.V823L	0.89	"HMMPfam_CPSase_L_D3,superfamily_CarbamoylP_synth_lsu_oligo"	###############################################################################################################################################################################################################################################################	-	no_errors
CAD	790	genome.wustl.edu	36	2	27309790	27309790	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27309790	27309790	G	A	SNP	CAD	NM_004341	human	genbank	54_36p	1	reviewed	missense	c.3098	p.R1033Q	1	"HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SNX17	9784	genome.wustl.edu	36	2	27451898	27451898	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27451898	27451898	C	T	SNP	SNX17	NM_014748	human	genbank	54_36p	1	reviewed	silent	c.796	p.L266	0.9	HMMPfam_FERM_M	"HMMPfam_PX,HMMSmart_PX,superfamily_PX,HMMPfam_FERM_M"	-	no_errors
PPM1G	5496	genome.wustl.edu	36	2	27458948	27458948	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27458948	27458948	G	A	SNP	PPM1G	NM_002707	human	genbank	54_36p	-1	reviewed	silent	c.1230	p.N410	1	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C"	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C"	-	no_errors
FTH1P3	2498	genome.wustl.edu	36	2	27469649	27469649	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27469649	27469649	G	A	SNP	FTHL3P	NR_002201	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
IFT172	26160	genome.wustl.edu	36	2	27561810	27561810	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27561810	27561810	G	A	SNP	IFT172	NM_015662	human	genbank	54_36p	-1	validated	missense	c.104	p.T35I	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_TPR-like,superfamily_HCP-like"	-	no_errors
C2orf16	84226	genome.wustl.edu	36	2	27654707	27654707	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27654707	27654707	A	G	SNP	C2orf16	NM_032266	human	genbank	54_36p	1	validated	silent	c.1764	p.V588	1	NULL	NULL	-	no_errors
C2orf16	84226	genome.wustl.edu	36	2	27657848	27657848	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27657848	27657848	G	C	SNP	C2orf16	NM_032266	human	genbank	54_36p	1	validated	missense	c.4905	p.Q1635H	0.01	NULL	NULL	-	no_errors
ZNF512	84450	genome.wustl.edu	36	2	27674544	27674544	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	27674544	27674544	G	T	SNP	ZNF512	NM_032434	human	genbank	54_36p	1	validated	missense	c.196	p.D66Y	0.72	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FOSL2	2355	genome.wustl.edu	36	2	28485223	28485223	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	28485223	28485223	G	A	SNP	FOSL2	NM_005253	human	genbank	54_36p	1	reviewed	missense	c.448	p.E150K	1	"HMMSmart_SM00338,HMMPfam_bZIP_2"	"HMMSmart_SM00338,HMMPfam_bZIP_2,PatternScan_BZIP_BASIC"	-	no_errors
FOSL2	2355	genome.wustl.edu	36	2	28488703	28488703	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	28488703	28488703	G	C	SNP	FOSL2	NM_005253	human	genbank	54_36p	1	reviewed	missense	c.865	p.E289Q	1	NULL	"HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2"	-	no_errors
PLB1	151056	genome.wustl.edu	36	2	28697349	28697349	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	28697349	28697349	G	T	SNP	PLB1	NM_153021	human	genbank	54_36p	1	validated	missense	c.3527	p.R1176M	0.98	"superfamily_SGNH hydrolase,HMMPfam_Lipase_GDSL"	"superfamily_SGNH hydrolase,PatternScan_LIPASE_GDSL_SER,HMMPfam_Lipase_GDSL"	-	no_errors
WDR43	23160	genome.wustl.edu	36	2	29017837	29017837	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	29017837	29017837	G	C	SNP	WDR43	NM_015131	human	genbank	54_36p	1	validated	missense	c.1627	p.D543H	1	"superfamily_WD40_like,HMMPfam_NUC189"	"PatternScan_WD_REPEATS_1,HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,HMMPfam_NUC189"	-	no_errors
ALK	238	genome.wustl.edu	36	2	29794060	29794060	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	29794060	29794060	G	T	SNP	ALK	NM_004304	human	genbank	54_36p	-1	reviewed	missense	c.675	p.S225R	0.01	NULL	"superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_MAM,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
XDH	7498	genome.wustl.edu	36	2	31424687	31424687	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	31424687	31424687	G	C	SNP	XDH	NM_000379	human	genbank	54_36p	-1	reviewed	missense	c.3098	p.T1033S	1	"superfamily_Ald_xan_DH_mo_bd,HMMPfam_Ald_Xan_dh_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
NLRC4	58484	genome.wustl.edu	36	2	32328942	32328942	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	32328942	32328942	C	A	SNP	NLRC4	NM_021209	human	genbank	54_36p	-1	validated	missense	c.1495	p.V499L	0	NULL	"HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like"	-	no_errors
LTBP1	4052	genome.wustl.edu	36	2	33331329	33331329	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	33331329	33331329	C	T	SNP	LTBP1	NM_206943	human	genbank	54_36p	1	reviewed	missense	c.2081	p.S694F	1	"superfamily_TB module/8-cys domain,HMMPfam_TB"	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
LTBP1	4052	genome.wustl.edu	36	2	33393840	33393840	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	33393840	33393840	G	A	SNP	LTBP1	NM_206943	human	genbank	54_36p	1	reviewed	missense	c.3733	p.D1245N	1	"HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
FAM98A	25940	genome.wustl.edu	36	2	33670758	33670758	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	33670758	33670758	A	T	SNP	FAM98A	NM_015475	human	genbank	54_36p	-1	validated	missense	c.230	p.L77H	1	HMMPfam_DUF2465	HMMPfam_DUF2465	-	no_errors
MYADML	151325	genome.wustl.edu	36	2	33805641	33805641	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	33805641	33805641	A	T	SNP	MYADML	ENST00000322472	human	ensembl	54_36p	-1	known	missense	c.706	p.Y236N	1	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
TTC15	51112	genome.wustl.edu	36	2	3443064	3443064	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	3443064	3443064	C	T	SNP	TTC15	NM_016030	human	genbank	54_36p	1	validated	missense	c.1627	p.R543C	1	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
ADI1	55256	genome.wustl.edu	36	2	3481851	3481851	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	3481851	3481851	T	C	SNP	ADI1	NM_018269	human	genbank	54_36p	-1	reviewed	missense	c.430	p.K144E	1	"superfamily_RmlC-like cupins,HMMPfam_ARD"	"superfamily_RmlC-like cupins,HMMPfam_ARD"	-	no_errors
RNASEH1	246243	genome.wustl.edu	36	2	3575858	3575858	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	3575858	3575858	G	A	SNP	RNASEH1	NM_002936	human	genbank	54_36p	-1	validated	silent	c.489	p.Y163	1	"HMMPfam_RnaseH,superfamily_Ribonuclease H-like"	"superfamily_L9 N-domain-like,HMMPfam_RnaseH,superfamily_Ribonuclease H-like"	-	no_errors
CRIM1	51232	genome.wustl.edu	36	2	36598086	36598086	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	36598086	36598086	C	T	SNP	CRIM1	NM_016441	human	genbank	54_36p	1	provisional	silent	c.2103	p.C701	1	"HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1"	"HMMSmart_IB,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Antistasin,superfamily_Antihaemostatic"	-	no_errors
FEZ2	9637	genome.wustl.edu	36	2	36659442	36659442	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	36659442	36659442	G	T	SNP	FEZ2	NM_001042548	human	genbank	54_36p	-1	reviewed	nonsense	c.705	p.Y235*	0.93	HMMPfam_FEZ	HMMPfam_FEZ	-	no_errors
HEATR5B	54497	genome.wustl.edu	36	2	37069351	37069351	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	37069351	37069351	C	T	SNP	HEATR5B	NM_019024	human	genbank	54_36p	-1	validated	silent	c.5853	p.A1951	0.96	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
HEATR5B	54497	genome.wustl.edu	36	2	37069439	37069439	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	37069439	37069439	G	C	SNP	HEATR5B	NM_019024	human	genbank	54_36p	-1	validated	missense	c.5765	p.P1922R	1	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
ALLC	55821	genome.wustl.edu	36	2	3721230	3721231	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	3721230	3721231	GG	TT	DNP	ALLC	NM_018436	human	genbank	54_36p	1	validated	missense	c.560_561	p.W187F	1.000:0.995	NULL	"superfamily_Gal_bind_like,HMMPfam_Allantoicase"	-	no_errors
EIF2AK2	5610	genome.wustl.edu	36	2	37228449	37228449	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	37228449	37228449	G	C	SNP	EIF2AK2	NM_002759	human	genbank	54_36p	-1	validated	missense	c.5	p.A2G	0.87	NULL	"HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PRKD3	23683	genome.wustl.edu	36	2	37371626	37371626	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	37371626	37371626	A	C	SNP	PRKD3	NM_005813	human	genbank	54_36p	-1	reviewed	missense	c.448	p.F150V	1	superfamily_Cysteine-rich domain	###############################################################################################################################################################################################################################################################	-	no_errors
CYP1B1	1545	genome.wustl.edu	36	2	38151642	38151642	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	38151642	38151642	G	C	SNP	CYP1B1	NM_000104	human	genbank	54_36p	-1	reviewed	missense	c.1359	p.N453K	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
ATL2	64225	genome.wustl.edu	36	2	38423966	38423966	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	38423966	38423966	C	G	SNP	ATL2	NM_022374	human	genbank	54_36p	-1	validated	missense	c.311	p.R104P	1	"superfamily_SSF52540,HMMPfam_GBP"	"superfamily_SSF52540,HMMPfam_GBP,superfamily_GBP"	-	no_errors
DHX57	90957	genome.wustl.edu	36	2	38939472	38939472	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	38939472	38939472	T	A	SNP	DHX57	NM_198963	human	genbank	54_36p	-1	provisional	silent	c.1422	p.A474	0.11	NULL	"HMMPfam_UBA,HMMPfam_RWD,HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMSmart_SM00487,HMMPfam_DEAD,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
SOS1	6654	genome.wustl.edu	36	2	39066780	39066780	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	39066780	39066780	G	C	SNP	SOS1	NM_005633	human	genbank	54_36p	-1	reviewed	missense	c.3691	p.L1231V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SOS1	6654	genome.wustl.edu	36	2	39066920	39066920	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	39066920	39066920	G	T	SNP	SOS1	NM_005633	human	genbank	54_36p	-1	reviewed	missense	c.3551	p.P1184H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CDKL4	344387	genome.wustl.edu	36	2	39294099	39294099	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	39294099	39294099	G	C	SNP	CDKL4	NM_001009565	human	genbank	54_36p	-1	provisional	missense	c.309	p.I103M	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MAP4K3	8491	genome.wustl.edu	36	2	39339084	39339084	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	39339084	39339084	A	G	SNP	MAP4K3	NM_003618	human	genbank	54_36p	-1	reviewed	silent	c.2379	p.C793	1	"HMMSmart_SM00036,HMMPfam_CNH"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
MAP4K3	8491	genome.wustl.edu	36	2	39368821	39368821	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	39368821	39368821	T	G	SNP	MAP4K3	NM_003618	human	genbank	54_36p	-1	reviewed	missense	c.1419	p.Q473H	0.98	superfamily_Protein kinase-like (PK-like)	"HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
EML4	27436	genome.wustl.edu	36	2	42375786	42375786	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	42375786	42375786	T	A	SNP	EML4	NM_019063	human	genbank	54_36p	1	validated	silent	c.1236	p.V412	0.99	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"HMMPfam_HELP,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_EF_HAND_1,PatternScan_TRYPSIN_SER,PatternScan_WD_REPEATS_1,PatternScan_HIS_ACID_PHOSPHAT_2"	-	no_errors
EML4	27436	genome.wustl.edu	36	2	42409532	42409532	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	42409532	42409532	G	C	SNP	EML4	NM_019063	human	genbank	54_36p	1	validated	missense	c.2344	p.V782L	1	NULL	"PatternScan_HIS_ACID_PHOSPHAT_2,HMMSmart_SM00320,HMMPfam_HELP,superfamily_WD40 repeat-like,PatternScan_TRYPSIN_SER,PatternScan_EF_HAND_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
MTA3	57504	genome.wustl.edu	36	2	42789748	42789748	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	42789748	42789748	G	T	SNP	MTA3	NM_020744	human	genbank	54_36p	1	provisional	missense	c.1533	p.M511I	1	NULL	"HMMPfam_BAH,HMMSmart_BAH,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain_like,HMMSmart_ZnF_GATA,HMMPfam_GATA"	-	no_errors
HAAO	23498	genome.wustl.edu	36	2	42848133	42848133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	42848133	42848133	G	A	SNP	HAAO	NM_012205	human	genbank	54_36p	-1	reviewed	missense	c.809	p.S270F	0.26	superfamily_RmlC-like cupins	"HMMPfam_3-HAO,superfamily_RmlC-like cupins"	-	no_errors
THADA	63892	genome.wustl.edu	36	2	43373807	43373807	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	43373807	43373807	T	A	SNP	THADA	NM_001083953	human	genbank	54_36p	-1	validated	silent	c.4488	p.G1496	0.19	PatternScan_FORMATE_NITRITE_TP_1	"superfamily_ARM repeat,HMMPfam_DUF2428,PatternScan_FORMATE_NITRITE_TP_1"	-	no_errors
DYNC2LI1	51626	genome.wustl.edu	36	2	43864168	43864168	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	43864168	43864168	G	A	SNP	DYNC2LI1	NM_016008	human	genbank	54_36p	1	validated	silent	c.132	p.K44	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KRT18P26	729634	genome.wustl.edu	36	2	44366890	44366890	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	44366890	44366890	C	G	SNP	KRT18P26	XR_039730	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.02	-	-	-	pseudogene
PREPL	9581	genome.wustl.edu	36	2	44402469	44402469	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	44402469	44402469	C	A	SNP	PREPL	NM_006036	human	genbank	54_36p	-1	validated	splice_site	c.2094+1	e13+1	1	-	-	-	no_errors
PRKCE	5581	genome.wustl.edu	36	2	46059636	46059636	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	46059636	46059636	A	C	SNP	PRKCE	NM_005400	human	genbank	54_36p	1	reviewed	missense	c.590	p.Q197P	1	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	###############################################################################################################################################################################################################################################################	-	no_errors
SOCS5	9655	genome.wustl.edu	36	2	46840459	46840459	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	46840459	46840459	G	A	SNP	SOCS5	NM_014011	human	genbank	54_36p	1	reviewed	missense	c.1286	p.R429Q	1	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00253,HMMPfam_SOCS_box"	-	no_errors
MSH2	4436	genome.wustl.edu	36	2	47510535	47510535	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	47510535	47510535	G	A	SNP	MSH2	NM_000251	human	genbank	54_36p	1	reviewed	silent	c.1227	p.Q409	1	"HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd"	"HMMPfam_MutS_I,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2"	-	no_errors
MSH6	2956	genome.wustl.edu	36	2	47881758	47881758	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	47881758	47881758	C	G	SNP	MSH6	NM_000179	human	genbank	54_36p	1	reviewed	nonsense	c.3132	p.Y1044*	1	"superfamily_DNA repair protein MutS domain III,HMMSmart_SM00533"	###############################################################################################################################################################################################################################################################	-	no_errors
KLRAQ1	129285	genome.wustl.edu	36	2	48540782	48540782	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	48540782	48540782	T	G	SNP	KLRAQ1	NM_152994	human	genbank	54_36p	1	validated	silent	c.585	p.L195	0.99	NULL	"HMMPfam_KLRAQ,HMMPfam_TTKRSYEDQ"	-	no_errors
STON1-GTF2A1L	286749	genome.wustl.edu	36	2	48727208	48727208	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	48727208	48727208	A	G	SNP	STON1-GTF2A1L	NM_172311	human	genbank	54_36p	1	reviewed	silent	c.2613	p.V871	0.02	HMMPfam_TFIIA	"superfamily_AP50,HMMPfam_Adap_comp_sub,superfamily_TFIIA_helical,HMMPfam_TFIIA,superfamily_TFIIA_betabarrel"	-	no_errors
LHCGR	3973	genome.wustl.edu	36	2	48768857	48768857	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	2	48768857	48768857	A	G	SNP	LHCGR	NM_000233	human	genbank	54_36p	-1	reviewed	missense	c.1583	p.I528T	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LHCGR	3973	genome.wustl.edu	36	2	48769227	48769227	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	48769227	48769227	C	T	SNP	LHCGR	ENST00000403273	human	ensembl	54_36p	-1	known	splice_site	c.948-1	e11-1	1	-	-	-	no_errors
FSHR	2492	genome.wustl.edu	36	2	49043568	49043568	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	49043568	49043568	G	T	SNP	FSHR	NM_000145	human	genbank	54_36p	-1	reviewed	missense	c.1896	p.N632K	0.97	superfamily_Family A G protein-coupled receptor-like	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
NRXN1	9378	genome.wustl.edu	36	2	50002704	50002704	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	50002704	50002704	C	A	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	missense	c.4316	p.R1439L	1	HMMSmart_SM00294	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_SM00294"	-	no_errors
NRXN1	9378	genome.wustl.edu	36	2	50172113	50172113	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	50172113	50172113	C	T	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	silent	c.3570	p.K1190	0.99	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin"	-	no_errors
NRXN1	9378	genome.wustl.edu	36	2	50317435	50317435	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	50317435	50317435	T	A	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	missense	c.3542	p.H1181L	1	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin"	-	no_errors
NRXN1	9378	genome.wustl.edu	36	2	50578090	50578090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	50578090	50578090	G	T	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	missense	c.2764	p.Q922K	1	superfamily_Concanavalin A-like lectins/glucanases	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin"	-	no_errors
ERLEC1	27248	genome.wustl.edu	36	2	53882353	53882353	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	53882353	53882353	G	A	SNP	C2orf30	NM_015701	human	genbank	54_36p	1	validated	splice_site	c.750-1	e8-1	1	-	-	-	no_errors
GPR75	10936	genome.wustl.edu	36	2	53934071	53934071	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	53934071	53934071	C	A	SNP	GPR75	NM_006794	human	genbank	54_36p	-1	validated	missense	c.1327	p.D443Y	1	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
PSME4	23198	genome.wustl.edu	36	2	53975704	53975704	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	53975704	53975704	A	C	SNP	PSME4	NM_014614	human	genbank	54_36p	-1	validated	missense	c.3514	p.Y1172D	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
RPL23AP32	56969	genome.wustl.edu	36	2	54610021	54610021	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	54610021	54610021	C	T	SNP	RPL23AP32	NR_002229	human	genbank	54_36p	1	inferred	rna	NULL	NULL	1	-	-	-	pseudogene
SPTBN1	6711	genome.wustl.edu	36	2	54711572	54711572	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	54711572	54711572	C	T	SNP	SPTBN1	NM_003128	human	genbank	54_36p	1	reviewed	missense	c.2884	p.L962F	1	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
RTN4	57142	genome.wustl.edu	36	2	55068340	55068340	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	55068340	55068340	T	C	SNP	RTN4	NM_020532	human	genbank	54_36p	-1	reviewed	splice_site	c.3014-2	e4-2	1	-	-	-	no_errors
C2orf63	130162	genome.wustl.edu	36	2	55289342	55289342	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	55289342	55289342	C	G	SNP	C2orf63	NM_152385	human	genbank	54_36p	-1	validated	missense	c.823	p.G275R	0	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
CCDC88A	55704	genome.wustl.edu	36	2	55389610	55389610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	55389610	55389610	T	C	SNP	CCDC88A	NM_018084	human	genbank	54_36p	-1	validated	missense	c.4226	p.D1409G	1	NULL	superfamily_Prefoldin	-	no_errors
CCDC88A	55704	genome.wustl.edu	36	2	55443009	55443009	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	55443009	55443009	A	G	SNP	CCDC88A	NM_018084	human	genbank	54_36p	-1	validated	missense	c.566	p.L189P	1	NULL	superfamily_Prefoldin	-	no_errors
EFEMP1	2202	genome.wustl.edu	36	2	55998858	55998858	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	55998858	55998858	C	A	SNP	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	missense	c.130	p.D44Y	1	"superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179"	"superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
CCDC85A	114800	genome.wustl.edu	36	2	56273230	56273230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	56273230	56273230	C	T	SNP	CCDC85A	NM_001080433	human	genbank	54_36p	1	provisional	missense	c.391	p.R131C	1	HMMPfam_DUF2216	HMMPfam_DUF2216	-	no_errors
REL	5966	genome.wustl.edu	36	2	60972423	60972423	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	60972423	60972423	G	C	SNP	REL	NM_002908	human	genbank	54_36p	1	validated	missense	c.112	p.E38Q	1	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD"	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD,PatternScan_REL_1,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	-	no_errors
USP34	9736	genome.wustl.edu	36	2	61329262	61329262	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	61329262	61329262	A	G	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	silent	c.6282	p.N2094	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP34	9736	genome.wustl.edu	36	2	61375885	61375885	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	61375885	61375885	G	A	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	silent	c.4299	p.S1433	1	NULL	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
XPO1	7514	genome.wustl.edu	36	2	61577643	61577643	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	61577643	61577643	G	A	SNP	XPO1	NM_003400	human	genbank	54_36p	-1	reviewed	silent	c.763	p.L255	1	"superfamily_ARM-type_fold,HMMPfam_Xpo1"	"superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1,HMMPfam_CRM1_C"	-	no_errors
CCT4	10575	genome.wustl.edu	36	2	61953162	61953162	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	61953162	61953162	C	T	SNP	CCT4	NM_006430	human	genbank	54_36p	-1	validated	silent	c.1191	p.V397	1	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849"	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_SSF54849,superfamily_SSF52029"	-	no_errors
B3GNT2	10678	genome.wustl.edu	36	2	62303370	62303370	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	62303370	62303370	G	A	SNP	B3GNT2	NM_006577	human	genbank	54_36p	1	reviewed	missense	c.511	p.A171T	0	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
EHBP1	23301	genome.wustl.edu	36	2	62955168	62955168	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	62955168	62955168	T	C	SNP	EHBP1	NM_015252	human	genbank	54_36p	1	validated	silent	c.1287	p.P429	0.98	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
LOC730187	730187	genome.wustl.edu	36	2	64746638	64746638	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	64746638	64746638	G	A	SNP	LOC730187	XR_042354	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC730187	730187	genome.wustl.edu	36	2	64746640	64746640	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	64746640	64746640	C	T	SNP	LOC730187	XR_042354	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC729317	729317	genome.wustl.edu	36	2	65286552	65286552	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	65286552	65286552	T	A	SNP	LOC729317	XM_001133585	human	genbank	54_36p	1	model	missense	c.806	p.L269H	0.86	HMMPfam_Porin_3	"HMMPfam_Porin_3,PatternScan_EUKARYOTIC_PORIN"	-	no_errors
ETAA1	54465	genome.wustl.edu	36	2	67485182	67485182	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	67485182	67485182	C	G	SNP	ETAA1	NM_019002	human	genbank	54_36p	1	validated	missense	c.1864	p.Q622E	0.97	NULL	NULL	-	no_errors
ETAA1	54465	genome.wustl.edu	36	2	67490599	67490599	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	67490599	67490599	A	T	SNP	ETAA1	NM_019002	human	genbank	54_36p	1	validated	missense	c.2706	p.R902S	1	NULL	NULL	-	no_errors
PROKR1	10887	genome.wustl.edu	36	2	68736025	68736025	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	68736025	68736025	T	G	SNP	PROKR1	NM_138964	human	genbank	54_36p	1	validated	missense	c.995	p.M332R	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ARHGAP25	9938	genome.wustl.edu	36	2	68903017	68903017	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	68903017	68903017	G	T	SNP	ARHGAP25	NM_001007231	human	genbank	54_36p	1	validated	silent	c.1239	p.P413	0	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
BMP10	27302	genome.wustl.edu	36	2	68947020	68947020	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	68947020	68947020	T	A	SNP	BMP10	NM_014482	human	genbank	54_36p	-1	reviewed	missense	c.522	p.K174N	0	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
ANTXR1	84168	genome.wustl.edu	36	2	69158056	69158056	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	69158056	69158056	G	A	SNP	ANTXR1	NM_032208	human	genbank	54_36p	1	reviewed	missense	c.574	p.A192T	1	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Anth_Ig,HMMPfam_Ant_C"	-	no_errors
GMCL1	64395	genome.wustl.edu	36	2	69918248	69918248	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	69918248	69918248	A	G	SNP	GMCL1	NM_178439	human	genbank	54_36p	1	provisional	missense	c.326	p.D109G	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
ASPRV1	151516	genome.wustl.edu	36	2	70042190	70042190	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	70042190	70042190	T	-	DEL	ASPRV1	NM_152792	human	genbank	54_36p	-1	validated	frame_shift_del	c.135	p.V46fs	0	NULL	"superfamily_Pept_Aspartic,PatternScan_ASP_PROTEASE"	"(deletion:cds_exon[70041293,70042324])"	no_errors
RNF144A	9781	genome.wustl.edu	36	2	7054521	7054521	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	7054521	7054521	A	C	SNP	RNF144A	NM_014746	human	genbank	54_36p	1	reviewed	silent	c.13	p.R5	1	NULL	"HMMSmart_RING,HMMPfam_IBR,HMMSmart_IBR,superfamily_SSF57850,PatternScan_ZF_RING_1"	-	no_errors
CLEC4F	165530	genome.wustl.edu	36	2	70897329	70897329	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	70897329	70897329	G	C	SNP	CLEC4F	NM_173535	human	genbank	54_36p	-1	validated	missense	c.692	p.A231G	0.01	NULL	"PatternScan_C_TYPE_LECTIN_1,superfamily_C-type_lectin_fold"	-	no_errors
CLEC4F	165530	genome.wustl.edu	36	2	70897742	70897742	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	70897742	70897742	G	T	SNP	CLEC4F	NM_173535	human	genbank	54_36p	-1	validated	missense	c.279	p.H93Q	0	NULL	"superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
MCEE	84693	genome.wustl.edu	36	2	71204994	71204994	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	71204994	71204994	C	T	SNP	MCEE	NM_032601	human	genbank	54_36p	-1	reviewed	silent	c.228	p.A76	0.05	"superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase,HMMPfam_Glyoxalase"	"superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase,HMMPfam_Glyoxalase"	-	no_errors
MPHOSPH10	10199	genome.wustl.edu	36	2	71230613	71230613	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	71230613	71230613	A	G	SNP	MPHOSPH10	NM_005791	human	genbank	54_36p	1	reviewed	missense	c.2006	p.K669R	1	NULL	HMMPfam_Mpp10	-	no_errors
ZNF638	27332	genome.wustl.edu	36	2	71430641	71430641	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	71430641	71430641	G	A	SNP	ZNF638	NM_001014972	human	genbank	54_36p	1	reviewed	missense	c.1049	p.R350Q	0.69	NULL	"HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
DYSF	8291	genome.wustl.edu	36	2	71648647	71648647	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	71648647	71648647	G	T	SNP	DYSF	NM_003494	human	genbank	54_36p	1	reviewed	missense	c.2570	p.W857L	1	HMMPfam_FerB	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694"	-	no_errors
ALMS1	7840	genome.wustl.edu	36	2	73570466	73570466	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	73570466	73570466	C	A	SNP	ALMS1	NM_015120	human	genbank	54_36p	1	reviewed	silent	c.7869	p.A2623	0.09	NULL	NULL	-	no_errors
ALMS1P	200420	genome.wustl.edu	36	2	73754566	73754566	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	73754566	73754566	C	T	SNP	ALMS1P	ENST00000295136	human	ensembl	54_36p	1	known	missense	c.374	p.A125V	0.13	NULL	NULL	-	no_start_codon
TPRKB	51002	genome.wustl.edu	36	2	73815115	73815115	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	73815115	73815115	T	C	SNP	TPRKB	NM_016058	human	genbank	54_36p	-1	validated	silent	c.90	p.R30	0.99	NULL	HMMPfam_CGI-121	-	no_errors
C2orf78	388960	genome.wustl.edu	36	2	73896646	73896646	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	73896646	73896646	A	G	SNP	C2orf78	NM_001080474	human	genbank	54_36p	1	predicted	silent	c.1788	p.V596	0.13	NULL	NULL	-	no_errors
SLC4A5	57835	genome.wustl.edu	36	2	74344848	74344848	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	74344848	74344848	G	A	SNP	SLC4A5	NM_021196	human	genbank	54_36p	-1	reviewed	missense	c.649	p.R217C	1	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto"	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC4A5	57835	genome.wustl.edu	36	2	74385307	74385307	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	74385307	74385307	G	T	SNP	SLC4A5	NM_021196	human	genbank	54_36p	-1	reviewed	missense	c.88	p.P30T	0.19	NULL	"HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein"	-	no_errors
DCTN1	1639	genome.wustl.edu	36	2	74448668	74448668	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	74448668	74448668	G	C	SNP	DCTN1	NM_004082	human	genbank	54_36p	-1	reviewed	missense	c.1953	p.S651R	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Spectrin repeat"	-	no_errors
DQX1	165545	genome.wustl.edu	36	2	74600293	74600293	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	74600293	74600293	T	A	SNP	DQX1	NM_133637	human	genbank	54_36p	-1	validated	missense	c.1350	p.E450D	0.99	HMMPfam_DUF1605	"superfamily_SSF52540,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
DQX1	165545	genome.wustl.edu	36	2	74604673	74604673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	74604673	74604673	G	A	SNP	DQX1	NM_133637	human	genbank	54_36p	-1	validated	missense	c.347	p.P116L	0	NULL	"HMMPfam_HA2,HMMPfam_DUF1605,superfamily_SSF52540"	-	no_errors
HK2	3099	genome.wustl.edu	36	2	74935084	74935084	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	74935084	74935084	G	T	SNP	HK2	NM_000189	human	genbank	54_36p	1	reviewed	missense	c.220	p.G74W	1	"HMMPfam_Hexokinase_1,superfamily_SSF53067"	"HMMPfam_Hexokinase_1,superfamily_SSF53067,PatternScan_HEXOKINASES,HMMPfam_Hexokinase_2"	-	no_errors
C2orf3	6936	genome.wustl.edu	36	2	75781856	75781856	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	75781856	75781856	G	A	SNP	C2orf3	NM_003203	human	genbank	54_36p	-1	validated	nonsense	c.685	p.Q229*	1	NULL	HMMPfam_GCFC	-	no_errors
REG1P	5969	genome.wustl.edu	36	2	79216693	79216693	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	79216693	79216693	C	A	SNP	REG1P	NR_002714	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.01	-	-	-	pseudogene
LRRTM1	347730	genome.wustl.edu	36	2	80383130	80383130	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	80383130	80383130	C	A	SNP	LRRTM1	NM_178839	human	genbank	54_36p	-1	validated	silent	c.1326	p.V442	1	NULL	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
C2orf89	129293	genome.wustl.edu	36	2	84951253	84951253	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	84951253	84951253	G	T	SNP	LOC129293	NM_001080824	human	genbank	54_36p	-1	predicted	missense	c.276	p.D92E	1	NULL	NULL	-	no_errors
KCMF1	56888	genome.wustl.edu	36	2	85126817	85126817	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	85126817	85126817	C	T	SNP	KCMF1	NM_020122	human	genbank	54_36p	1	validated	missense	c.506	p.S169L	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	-	no_errors
GGCX	2677	genome.wustl.edu	36	2	85639141	85639154	+	Frame_Shift_Del	DEL	TCCATGATGTCTTG	TCCATGATGTCTTG	-	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	TCCATGATGTCTTG	TCCATGATGTCTTG	TCCATGATGTCTTG	-	TCCATGATGTCTTG	TCCATGATGTCTTG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	85639141	85639154	TCCATGATGTCTTG	-	DEL	GGCX	NM_000821	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.472_459	p.D153fs	1.000:1.000:1.000:1.000:0.987:0.998:0.984:0.965:1.000:1.000:1.000:1.000:1.000:1.000	"HMMSmart_HTTM,HMMPfam_VKG_Carbox"	"HMMSmart_HTTM,HMMPfam_VKG_Carbox,superfamily_RmlC_like_cupin"	"(deletion:cds_exon[85639074,85639239])"	no_errors
SFTPB	6439	genome.wustl.edu	36	2	85746307	85746307	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	85746307	85746307	A	C	SNP	SFTPB	NM_000542	human	genbank	54_36p	-1	validated	missense	c.515	p.L172R	0.18	NULL	"HMMPfam_SapA,HMMSmart_SAPA,superfamily_Saposin_like,HMMPfam_SapB_1,HMMSmart_SapB,HMMPfam_SapB_2"	-	no_errors
KDM3A	55818	genome.wustl.edu	36	2	86562679	86562679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	86562679	86562679	C	G	SNP	JMJD1A	NM_018433	human	genbank	54_36p	1	reviewed	silent	c.2628	p.P876	1	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
RMND5A	64795	genome.wustl.edu	36	2	86845685	86845685	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	86845685	86845685	G	C	SNP	RMND5A	NM_022780	human	genbank	54_36p	1	validated	missense	c.546	p.M182I	1	HMMSmart_SM00668	"HMMSmart_SM00667,HMMSmart_SM00668,HMMSmart_SM00757,superfamily_RING/U-box"	-	no_errors
KRCC1	51315	genome.wustl.edu	36	2	88108971	88108971	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	88108971	88108971	T	C	SNP	KRCC1	NM_016618	human	genbank	54_36p	-1	provisional	missense	c.227	p.N76S	0	NULL	NULL	-	no_errors
SMYD1	150572	genome.wustl.edu	36	2	88164998	88164998	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	88164998	88164998	C	G	SNP	SMYD1	NM_198274	human	genbank	54_36p	1	provisional	silent	c.186	p.L62	1	"superfamily_SSF82199,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1"	"superfamily_SSF82199,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_SET"	-	no_errors
SMYD1	150572	genome.wustl.edu	36	2	88168501	88168501	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	88168501	88168501	C	T	SNP	SMYD1	NM_198274	human	genbank	54_36p	1	provisional	missense	c.320	p.A107V	0.97	"HMMSmart_SET,superfamily_SSF82199"	"HMMPfam_SET,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_SSF82199"	-	no_errors
THNSL2	55258	genome.wustl.edu	36	2	88266539	88266539	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	88266539	88266539	C	A	SNP	THNSL2	ENST00000377254	human	ensembl	54_36p	1	known	missense	c.1085	p.P362Q	0.98	HMMPfam_PALP	"superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP"	-	no_errors
KIDINS220	57498	genome.wustl.edu	36	2	8843568	8843568	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	8843568	8843568	G	T	SNP	KIDINS220	NM_020738	human	genbank	54_36p	-1	validated	silent	c.1983	p.V661	1	HMMPfam_KAP_NTPase	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_KAP_NTPase,superfamily_SAM/Pointed domain"	-	no_errors
KIDINS220	57498	genome.wustl.edu	36	2	8843914	8843914	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	8843914	8843914	T	C	SNP	KIDINS220	NM_020738	human	genbank	54_36p	-1	validated	silent	c.1812	p.R604	0.98	HMMPfam_KAP_NTPase	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_KAP_NTPase"	-	no_errors
RPIA	22934	genome.wustl.edu	36	2	88809936	88809936	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	88809936	88809936	G	A	SNP	RPIA	NM_144563	human	genbank	54_36p	1	validated	missense	c.428	p.G143D	1	"superfamily_SSF100950,HMMPfam_Rib_5-P_isom_A"	"superfamily_SSF100950,HMMPfam_Rib_5-P_isom_A,superfamily_SSF75445"	-	no_errors
MRPS5	64969	genome.wustl.edu	36	2	95116901	95116901	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	95116901	95116901	G	A	SNP	MRPS5	NM_031902	human	genbank	54_36p	-1	reviewed	silent	c.1221	p.D407	1	NULL	"superfamily_dsRNA-binding domain-like,HMMPfam_Ribosomal_S5,PatternScan_RIBOSOMAL_S5,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_Ribosomal_S5_C"	-	no_errors
PROM2	150696	genome.wustl.edu	36	2	95304222	95304222	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	95304222	95304222	T	G	SNP	PROM2	NM_144707	human	genbank	54_36p	1	provisional	silent	c.162	p.V54	0	HMMPfam_Prominin	"HMMPfam_Prominin,PatternScan_PA2_HIS"	-	no_errors
TRIM43	129868	genome.wustl.edu	36	2	95623587	95623587	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	95623587	95623587	G	T	SNP	TRIM43	NM_138800	human	genbank	54_36p	1	provisional	missense	c.89	p.C30F	0.92	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY"	-	no_errors
TRIM43	129868	genome.wustl.edu	36	2	95625790	95625790	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	95625790	95625790	G	C	SNP	TRIM43	NM_138800	human	genbank	54_36p	1	provisional	missense	c.621	p.E207D	0	NULL	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
ADRA2B	151	genome.wustl.edu	36	2	96145015	96145015	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	96145015	96145015	G	A	SNP	ADRA2B	NM_000682	human	genbank	54_36p	-1	reviewed	missense	c.601	p.R201C	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ADRA2B	151	genome.wustl.edu	36	2	96145154	96145154	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	96145154	96145154	C	A	SNP	ADRA2B	NM_000682	human	genbank	54_36p	-1	reviewed	missense	c.462	p.Q154H	0.19	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
SNRNP200	23020	genome.wustl.edu	36	2	96316472	96316472	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	96316472	96316472	T	C	SNP	SNRNP200	NM_014014	human	genbank	54_36p	-1	validated	missense	c.3638	p.K1213R	1	"HMMSmart_SM00611,HMMPfam_Sec63,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMSmart_SM00611,HMMPfam_Sec63"	-	no_errors
SNRNP200	23020	genome.wustl.edu	36	2	96332777	96332777	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	96332777	96332777	C	G	SNP	SNRNP200	NM_014014	human	genbank	54_36p	-1	validated	missense	c.228	p.E76D	1	NULL	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_Sec63,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CNNM4	26504	genome.wustl.edu	36	2	96791179	96791179	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	96791179	96791179	G	T	SNP	CNNM4	NM_020184	human	genbank	54_36p	1	validated	missense	c.716	p.G239V	1	HMMPfam_DUF21	"HMMPfam_DUF21,HMMPfam_CBS,HMMSmart_cNMP"	-	no_errors
CNNM3	26505	genome.wustl.edu	36	2	96854663	96854663	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	96854663	96854663	A	G	SNP	CNNM3	NM_017623	human	genbank	54_36p	1	validated	missense	c.1367	p.Y456C	1	NULL	"HMMPfam_DUF21,HMMPfam_CBS"	-	no_errors
ENSG00000144188	0	genome.wustl.edu	36	2	97055666	97055666	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	2	97055666	97055666	A	T	SNP	ENSG00000144188	ENST00000272598	human	ensembl	54_36p	-1	known	missense	c.1111	p.F371I	0	HMMPfam_SPRY	"PatternScan_ZF_RING_1,superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY"	-	no_errors
TMEM131	23505	genome.wustl.edu	36	2	97758903	97758903	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	97758903	97758903	T	C	SNP	TMEM131	NM_015348	human	genbank	54_36p	-1	validated	silent	c.4155	p.K1385	0.96	NULL	NULL	-	no_errors
TMEM131	23505	genome.wustl.edu	36	2	97797035	97797035	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	97797035	97797035	A	G	SNP	TMEM131	NM_015348	human	genbank	54_36p	-1	validated	missense	c.1448	p.V483A	1	NULL	NULL	-	no_errors
VWA3B	200403	genome.wustl.edu	36	2	98170896	98170896	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	98170896	98170896	A	C	SNP	VWA3B	NM_144992	human	genbank	54_36p	1	provisional	silent	c.1338	p.A446	1	NULL	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA"	-	no_errors
VWA3B	200403	genome.wustl.edu	36	2	98233285	98233285	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	98233285	98233285	A	G	SNP	VWA3B	NM_144992	human	genbank	54_36p	1	provisional	missense	c.2746	p.N916D	0.95	NULL	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	-	no_errors
MRPL30	51263	genome.wustl.edu	36	2	99178516	99178516	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	99178516	99178516	G	T	SNP	MRPL30	NM_145212	human	genbank	54_36p	1	reviewed	missense	c.402	p.M134I	1	NULL	superfamily_Ribosomal protein L30p/L7e	-	no_errors
REV1	51455	genome.wustl.edu	36	2	99421715	99421715	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	99421715	99421715	C	T	SNP	REV1	NM_016316	human	genbank	54_36p	-1	reviewed	silent	c.993	p.T331	0.05	NULL	"HMMPfam_BRCT,superfamily_BRCT domain,HMMSmart_SM00292,superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain"	-	no_errors
AFF3	3899	genome.wustl.edu	36	2	99541778	99541778	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	99541778	99541778	G	A	SNP	AFF3	NM_001025108	human	genbank	54_36p	-1	reviewed	silent	c.3351	p.D1117	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AFF3	3899	genome.wustl.edu	36	2	99541780	99541780	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	99541780	99541780	C	G	SNP	AFF3	NM_001025108	human	genbank	54_36p	-1	reviewed	missense	c.3349	p.D1117H	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
TAF1B	9014	genome.wustl.edu	36	2	9991399	9991399	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	9991399	9991399	T	A	SNP	TAF1B	NM_005680	human	genbank	54_36p	1	reviewed	missense	c.1602	p.N534K	1	NULL	NULL	-	no_errors
C20orf46	55321	genome.wustl.edu	36	20	1110098	1110098	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	1110098	1110098	G	T	SNP	C20orf46	NM_018354	human	genbank	54_36p	-1	predicted	silent	c.165	p.T55	0.29	NULL	NULL	-	no_errors
BTBD3	22903	genome.wustl.edu	36	20	11851398	11851398	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	11851398	11851398	C	G	SNP	BTBD3	NM_014962	human	genbank	54_36p	1	validated	missense	c.653	p.T218S	1	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_PHR"	-	no_errors
BTBD3	22903	genome.wustl.edu	36	20	11852279	11852279	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	11852279	11852279	G	A	SNP	BTBD3	NM_014962	human	genbank	54_36p	1	validated	missense	c.1534	p.G512R	1	HMMPfam_PHR	"HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_PHR,HMMPfam_BTB"	-	no_errors
SDCBP2	27111	genome.wustl.edu	36	20	1249033	1249033	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	1249033	1249033	C	G	SNP	SDCBP2	NM_080489	human	genbank	54_36p	-1	validated	missense	c.28	p.D10H	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
ESF1	51575	genome.wustl.edu	36	20	13701204	13701204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	13701204	13701204	C	T	SNP	ESF1	NM_016649	human	genbank	54_36p	-1	provisional	missense	c.1207	p.V403I	0.62	NULL	NULL	-	no_errors
SIRPB1	10326	genome.wustl.edu	36	20	1499592	1499592	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	1499592	1499592	G	A	SNP	SIRPB1	NM_006065	human	genbank	54_36p	-1	reviewed	missense	c.943	p.L315F	0.44	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C1-set,HMMSmart_SM00407"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C1-set,HMMSmart_SM00407"	-	no_errors
MACROD2	140733	genome.wustl.edu	36	20	15791439	15791439	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	15791439	15791439	A	C	SNP	MACROD2	NM_080676	human	genbank	54_36p	1	validated	missense	c.695	p.Y232S	1	superfamily_SSF52949	"superfamily_SSF52949,HMMSmart_A1pp,HMMPfam_Macro"	-	no_errors
OTOR	56914	genome.wustl.edu	36	20	16677556	16677556	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	16677556	16677556	G	A	SNP	OTOR	NM_020157	human	genbank	54_36p	1	reviewed	missense	c.160	p.D54N	1	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2"	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2"	-	no_errors
RRBP1	6238	genome.wustl.edu	36	20	17550521	17550521	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	17550521	17550521	T	C	SNP	RRBP1	NM_001042576	human	genbank	54_36p	-1	reviewed	silent	c.1920	p.E640	0	NULL	HMMPfam_Rib_recp_KP_reg	-	no_errors
RRBP1	6238	genome.wustl.edu	36	20	17587676	17587676	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	17587676	17587676	C	T	SNP	RRBP1	ENST00000246043	human	ensembl	54_36p	-1	known	missense	c.1477	p.E493K	0	NULL	HMMPfam_Rib_recp_KP_reg	-	no_errors
CSRP2BP	57325	genome.wustl.edu	36	20	18090728	18090728	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	18090728	18090728	G	C	SNP	CSRP2BP	NM_020536	human	genbank	54_36p	1	reviewed	missense	c.947	p.S316T	1	NULL	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1"	-	no_errors
SEC23B	10483	genome.wustl.edu	36	20	18444360	18444360	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	18444360	18444360	A	C	SNP	SEC23B	NM_006363	human	genbank	54_36p	1	reviewed	missense	c.346	p.T116P	1	"superfamily_SSF81995,superfamily_Znf_Sec23_Sec24"	"superfamily_SSF81995,superfamily_Znf_Sec23_Sec24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_SSF53300,HMMPfam_Sec23_BS,superfamily_Sec23_helical,HMMPfam_Sec23_helical,superfamily_SSF82754,HMMPfam_Gelsolin"	-	no_errors
DTD1	92675	genome.wustl.edu	36	20	18672892	18672892	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	18672892	18672892	C	G	SNP	DTD1	NM_080820	human	genbank	54_36p	1	reviewed	missense	c.626	p.P209R	1	NULL	"superfamily_DTD-like (Pfam 02580),HMMPfam_Tyr_Deacylase"	-	no_errors
PDYN	5173	genome.wustl.edu	36	20	1909196	1909196	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	1909196	1909196	G	A	SNP	PDYN	NM_024411	human	genbank	54_36p	-1	reviewed	missense	c.538	p.R180C	1	NULL	"HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR"	-	no_errors
CRNKL1	51340	genome.wustl.edu	36	20	19970259	19970259	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	19970259	19970259	C	T	SNP	CRNKL1	NM_016652	human	genbank	54_36p	-1	reviewed	missense	c.1658	p.R553K	1	"superfamily_TPR-like,HMMPfam_HAT,HMMSmart_SM00386"	"HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like"	-	no_errors
C20orf26	26074	genome.wustl.edu	36	20	20217566	20217566	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	20	20217566	20217566	G	A	SNP	C20orf26	NM_015585	human	genbank	54_36p	1	predicted	missense	c.3110	p.G1037E	1	NULL	"superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain"	-	no_errors
RALGAPA2	57186	genome.wustl.edu	36	20	20533856	20533856	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	20533856	20533856	T	A	SNP	C20orf74	NM_020343	human	genbank	54_36p	-1	validated	missense	c.2001	p.K667N	1	NULL	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	-	no_errors
FOXA2	3170	genome.wustl.edu	36	20	22511343	22511343	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	22511343	22511343	C	A	SNP	FOXA2	NM_021784	human	genbank	54_36p	-1	reviewed	missense	c.519	p.Q173H	1	"HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head"	"HMMPfam_Fork_head_N,HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C"	-	no_errors
TGM3	7053	genome.wustl.edu	36	20	2260705	2260705	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2260705	2260705	C	G	SNP	TGM3	NM_003245	human	genbank	54_36p	1	reviewed	missense	c.1391	p.T464R	0	NULL	"HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C"	-	no_errors
TGM3	7053	genome.wustl.edu	36	20	2268522	2268522	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2268522	2268522	G	A	SNP	TGM3	NM_003245	human	genbank	54_36p	1	reviewed	missense	c.1823	p.R608Q	0	"HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains"	"HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases"	-	no_errors
NXT1	29107	genome.wustl.edu	36	20	23282730	23282730	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	20	23282730	23282730	G	A	SNP	NXT1	NM_013248	human	genbank	54_36p	1	reviewed	missense	c.52	p.E18K	1	"superfamily_SSF54427,HMMPfam_NTF2"	"superfamily_SSF54427,HMMPfam_NTF2"	-	no_errors
TGM6	343641	genome.wustl.edu	36	20	2328980	2328980	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2328980	2328980	G	T	SNP	TGM6	NM_198994	human	genbank	54_36p	1	validated	silent	c.879	p.R293	0	"superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core"	"HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C"	-	no_errors
NAPB	10801	genome.wustl.edu	36	20	23308089	23308089	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	20	23308089	23308089	G	T	SNP	NAPB	NM_022080	human	genbank	54_36p	-1	validated	missense	c.779	p.T260N	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_NSF"	-	no_errors
TGM6	343641	genome.wustl.edu	36	20	2332442	2332442	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	20	2332442	2332442	A	G	SNP	TGM6	NM_198994	human	genbank	54_36p	1	validated	missense	c.1309	p.I437V	1	superfamily_Cysteine proteinases	"HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases"	-	no_errors
TGM6	343641	genome.wustl.edu	36	20	2345927	2345927	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2345927	2345927	C	T	SNP	TGM6	NM_198994	human	genbank	54_36p	1	validated	silent	c.1386	p.F462	0.06	superfamily_Cysteine proteinases	"HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_SM00460,HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains,PatternScan_TRANSGLUTAMINASES,superfamily_E set domains,superfamily_Cysteine proteinases"	-	no_errors
DEFB125	245938	genome.wustl.edu	36	20	24997	24997	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	24997	24997	C	T	SNP	DEFB125	NM_153325	human	genbank	54_36p	1	reviewed	missense	c.410	p.S137F	0	NULL	NULL	-	no_errors
VSX1	30813	genome.wustl.edu	36	20	25010081	25010081	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	20	25010081	25010081	A	G	SNP	VSX1	ENST00000398332	human	ensembl	54_36p	-1	known	missense	c.428	p.M143T	0	NULL	NULL	-	no_errors
GINS1	9837	genome.wustl.edu	36	20	25353913	25353913	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	25353913	25353913	G	C	SNP	GINS1	NM_021067	human	genbank	54_36p	1	validated	missense	c.397	p.G133R	1	HMMPfam_Psf1	HMMPfam_Psf1	-	no_errors
TMC2	117532	genome.wustl.edu	36	20	2540923	2540923	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2540923	2540923	C	A	SNP	TMC2	NM_080751	human	genbank	54_36p	1	validated	silent	c.1680	p.P560	1	NULL	HMMPfam_TMC	-	no_errors
TMC2	117532	genome.wustl.edu	36	20	2541940	2541940	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2541940	2541940	G	A	SNP	TMC2	NM_080751	human	genbank	54_36p	1	validated	missense	c.1844	p.C615Y	1	HMMPfam_TMC	HMMPfam_TMC	-	no_errors
NINL	22981	genome.wustl.edu	36	20	25432690	25432690	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	25432690	25432690	C	A	SNP	NLP	NM_025176	human	genbank	54_36p	-1	validated	silent	c.759	p.V253	1	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
CPXM1	56265	genome.wustl.edu	36	20	2726850	2726850	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2726850	2726850	G	A	SNP	CPXM1	NM_019609	human	genbank	54_36p	-1	reviewed	missense	c.538	p.H180Y	0.01	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C"	###############################################################################################################################################################################################################################################################	-	no_errors
FAM113A	64773	genome.wustl.edu	36	20	2767116	2767116	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2767116	2767116	G	A	SNP	FAM113A	NM_022760	human	genbank	54_36p	-1	predicted	silent	c.603	p.P201	1	superfamily_SGNH hydrolase	superfamily_SGNH hydrolase	-	no_errors
VPS16	64601	genome.wustl.edu	36	20	2795206	2795206	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	2795206	2795206	G	A	SNP	VPS16	NM_022575	human	genbank	54_36p	1	reviewed	missense	c.2506	p.A836T	1	NULL	"HMMPfam_Vps16_N,HMMPfam_Vps16_C"	-	no_errors
DEFB115	245929	genome.wustl.edu	36	20	29309134	29309134	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	29309134	29309134	C	A	SNP	DEFB115	NM_001037730	human	genbank	54_36p	1	provisional	missense	c.7	p.P3T	0.01	NULL	NULL	-	no_errors
DEFB118	117285	genome.wustl.edu	36	20	29424371	29424371	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	29424371	29424371	C	T	SNP	DEFB118	NM_054112	human	genbank	54_36p	1	provisional	nonsense	c.109	p.Q37*	0.01	NULL	NULL	-	no_errors
DEFB118	117285	genome.wustl.edu	36	20	29424617	29424617	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	29424617	29424617	G	A	SNP	DEFB118	NM_054112	human	genbank	54_36p	1	provisional	missense	c.355	p.V119I	0	NULL	NULL	-	no_errors
TPX2	22974	genome.wustl.edu	36	20	29821902	29821902	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	29821902	29821902	T	C	SNP	TPX2	NM_012112	human	genbank	54_36p	1	validated	missense	c.452	p.I151T	0	NULL	"HMMPfam_Aurora-A_bind,HMMPfam_TPX2"	-	no_errors
FOXS1	2307	genome.wustl.edu	36	20	29896449	29896449	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	29896449	29896449	A	T	SNP	FOXS1	NM_004118	human	genbank	54_36p	-1	reviewed	silent	c.558	p.P186	0.98	NULL	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
XKR7	343702	genome.wustl.edu	36	20	30048672	30048672	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	30048672	30048672	C	T	SNP	XKR7	NM_001011718	human	genbank	54_36p	1	provisional	silent	c.1491	p.T497	0.63	NULL	"HMMPfam_XK-related,HMMSmart_IQ"	-	no_errors
C20orf160	140706	genome.wustl.edu	36	20	30074124	30074124	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	30074124	30074124	G	T	SNP	C20orf160	NM_080625	human	genbank	54_36p	1	validated	missense	c.934	p.D312Y	1	NULL	NULL	-	no_errors
HCK	3055	genome.wustl.edu	36	20	30145462	30145462	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	30145462	30145462	G	A	SNP	HCK	NM_002110	human	genbank	54_36p	1	reviewed	missense	c.1228	p.E410K	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
PLAGL2	5326	genome.wustl.edu	36	20	30253404	30253404	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	30253404	30253404	G	A	SNP	PLAGL2	NM_002657	human	genbank	54_36p	-1	reviewed	missense	c.239	p.A80V	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
KIF3B	9371	genome.wustl.edu	36	20	30368004	30368004	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	30368004	30368004	G	C	SNP	KIF3B	NM_004798	human	genbank	54_36p	1	reviewed	missense	c.1520	p.R507T	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
BPIL3	128859	genome.wustl.edu	36	20	31086228	31086228	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	20	31086228	31086228	A	G	SNP	BPIL3	NM_174897	human	genbank	54_36p	1	provisional	splice_site	c.303-2	e4-2	0.99	-	-	-	no_errors
C20orf185	359710	genome.wustl.edu	36	20	31110938	31110938	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	31110938	31110938	G	A	SNP	C20orf185	NM_182658	human	genbank	54_36p	1	provisional	missense	c.375	p.M125I	1	"superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP"	"PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C"	-	no_errors
C20orf185	359710	genome.wustl.edu	36	20	31120375	31120375	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	31120375	31120375	G	A	SNP	C20orf185	NM_182658	human	genbank	54_36p	1	provisional	missense	c.1084	p.A362T	0.44	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom"	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP"	-	no_errors
C20orf185	359710	genome.wustl.edu	36	20	31123572	31123572	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	31123572	31123572	G	A	SNP	C20orf185	NM_182658	human	genbank	54_36p	1	provisional	missense	c.1262	p.G421E	0.46	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom"	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP"	-	no_errors
C20orf70	140683	genome.wustl.edu	36	20	31224419	31224419	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	31224419	31224419	G	A	SNP	C20orf70	NM_080574	human	genbank	54_36p	1	validated	missense	c.178	p.V60I	0	"HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom"	"HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom"	-	no_errors
ZNF341	84905	genome.wustl.edu	36	20	31818499	31818499	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	20	31818499	31818499	G	C	SNP	ZNF341	NM_032819	human	genbank	54_36p	1	validated	missense	c.1383	p.K461N	1	superfamily_SSF57667	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CHMP4B	128866	genome.wustl.edu	36	20	31899954	31899954	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	31899954	31899954	C	A	SNP	CHMP4B	NM_176812	human	genbank	54_36p	1	validated	missense	c.211	p.R71S	1	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors
NCOA6	23054	genome.wustl.edu	36	20	32792313	32792313	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	32792313	32792313	G	T	SNP	NCOA6	NM_014071	human	genbank	54_36p	-1	reviewed	missense	c.5408	p.S1803Y	1	NULL	NULL	-	no_errors
NCOA6	23054	genome.wustl.edu	36	20	32793676	32793676	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	32793676	32793676	A	C	SNP	NCOA6	NM_014071	human	genbank	54_36p	-1	reviewed	missense	c.4045	p.S1349A	0.98	NULL	NULL	-	no_errors
NCOA6	23054	genome.wustl.edu	36	20	32793754	32793754	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	32793754	32793754	G	A	SNP	NCOA6	NM_014071	human	genbank	54_36p	-1	reviewed	missense	c.3967	p.R1323W	1	NULL	NULL	-	no_errors
GSS	2937	genome.wustl.edu	36	20	32997502	32997502	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	32997502	32997502	G	C	SNP	GSS	NM_000178	human	genbank	54_36p	-1	reviewed	missense	c.190	p.Q64E	1	"superfamily_SSF56059,HMMPfam_GSH_synth_ATP"	"superfamily_SSF56059,HMMPfam_GSH_synth_ATP,HMMPfam_GSH_synthase,superfamily_PreATP-grasp-like"	-	no_errors
FAM83C	128876	genome.wustl.edu	36	20	33337857	33337857	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	33337857	33337857	C	G	SNP	FAM83C	NM_178468	human	genbank	54_36p	-1	validated	silent	c.2139	p.L713	0.01	NULL	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
CEP250	11190	genome.wustl.edu	36	20	33555271	33555271	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	33555271	33555271	A	G	SNP	CEP250	NM_007186	human	genbank	54_36p	1	reviewed	missense	c.5660	p.E1887G	0.93	NULL	superfamily_Prefoldin	-	no_errors
CEP250	11190	genome.wustl.edu	36	20	33559424	33559424	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	33559424	33559424	C	G	SNP	CEP250	NM_007186	human	genbank	54_36p	1	reviewed	silent	c.6897	p.T2299	0.64	NULL	superfamily_Prefoldin	-	no_errors
RBM12	10137	genome.wustl.edu	36	20	33705476	33705476	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	33705476	33705476	T	C	SNP	RBM12	NM_006047	human	genbank	54_36p	-1	reviewed	missense	c.1183	p.M395V	0.94	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
NFS1	9054	genome.wustl.edu	36	20	33732160	33732160	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	20	33732160	33732160	G	A	SNP	NFS1	NM_021100	human	genbank	54_36p	-1	reviewed	nonsense	c.703	p.Q235*	1	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5,PatternScan_AA_TRANSFER_CLASS_5"	-	no_errors
C20orf152	140894	genome.wustl.edu	36	20	34031855	34031855	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	20	34031855	34031855	G	T	SNP	C20orf152	NM_080834	human	genbank	54_36p	1	predicted	missense	c.304	p.D102Y	0	superfamily_cNMP_binding	"superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1"	-	no_errors
EPB41L1	2036	genome.wustl.edu	36	20	34225224	34225224	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	34225224	34225224	C	T	SNP	EPB41L1	NM_012156	human	genbank	54_36p	1	reviewed	silent	c.111	p.H37	1	NULL	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD"	-	no_errors
DLGAP4	22839	genome.wustl.edu	36	20	34493861	34493861	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	34493861	34493861	G	C	SNP	DLGAP4	NM_014902	human	genbank	54_36p	1	reviewed	missense	c.327	p.E109D	1	NULL	HMMPfam_GKAP	-	no_errors
DLGAP4	22839	genome.wustl.edu	36	20	34494244	34494244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	20	34494244	34494244	G	T	SNP	DLGAP4	NM_014902	human	genbank	54_36p	1	reviewed	missense	c.710	p.S237I	0.98	NULL	HMMPfam_GKAP	-	no_errors
DLGAP4	22839	genome.wustl.edu	36	20	34561482	34561482	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	34561482	34561482	G	A	SNP	DLGAP4	NM_183006	human	genbank	54_36p	1	reviewed	silent	c.471	p.E157	1	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
DSN1	79980	genome.wustl.edu	36	20	34829827	34829827	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	34829827	34829827	C	A	SNP	DSN1	NM_024918	human	genbank	54_36p	-1	reviewed	nonsense	c.388	p.E130*	0.99	HMMPfam_Mis12_component	HMMPfam_Mis12_component	-	no_errors
RBL1	5933	genome.wustl.edu	36	20	35094482	35094482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	35094482	35094482	C	G	SNP	RBL1	NM_002895	human	genbank	54_36p	-1	reviewed	missense	c.2382	p.K794N	1	"HMMPfam_RB_B,superfamily_Cyclin-like"	"HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385"	-	no_errors
RPN2	6185	genome.wustl.edu	36	20	35295860	35295860	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	35295860	35295860	C	T	SNP	RPN2	NM_002951	human	genbank	54_36p	1	reviewed	silent	c.1701	p.V567	1	HMMPfam_Ribophorin_II	HMMPfam_Ribophorin_II	-	no_errors
RPN2	6185	genome.wustl.edu	36	20	35295886	35295886	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	35295886	35295886	C	T	SNP	RPN2	NM_002951	human	genbank	54_36p	1	reviewed	missense	c.1727	p.T576M	1	HMMPfam_Ribophorin_II	HMMPfam_Ribophorin_II	-	no_errors
CTNNBL1	56259	genome.wustl.edu	36	20	35904173	35904173	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	35904173	35904173	T	C	SNP	CTNNBL1	NM_030877	human	genbank	54_36p	1	reviewed	silent	c.1330	p.L444	0.97	superfamily_ARM repeat	"HMMPfam_DUF1716,superfamily_ARM repeat"	-	no_errors
TGM2	7052	genome.wustl.edu	36	20	36212776	36212776	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	36212776	36212776	G	A	SNP	TGM2	NM_004613	human	genbank	54_36p	-1	reviewed	silent	c.531	p.N177	0	superfamily_Cysteine proteinases	"superfamily_E set domains,HMMPfam_Transglut_N,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C"	-	no_errors
KIAA1755	85449	genome.wustl.edu	36	20	36274961	36274961	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	36274961	36274961	C	G	SNP	KIAA1755	NM_001029864	human	genbank	54_36p	-1	predicted	missense	c.3500	p.S1167T	0	NULL	superfamily_Spectrin repeat	-	no_errors
KIAA1755	85449	genome.wustl.edu	36	20	36288975	36288975	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	36288975	36288975	C	T	SNP	KIAA1755	NM_001029864	human	genbank	54_36p	-1	predicted	missense	c.2047	p.V683I	0.01	NULL	superfamily_Spectrin repeat	-	no_errors
KIAA1755	85449	genome.wustl.edu	36	20	36303062	36303062	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	36303062	36303062	G	A	SNP	KIAA1755	NM_001029864	human	genbank	54_36p	-1	predicted	silent	c.885	p.G295	0	NULL	superfamily_Spectrin repeat	-	no_errors
BPI	671	genome.wustl.edu	36	20	36366093	36366093	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	36366093	36366093	C	T	SNP	BPI	NM_001725	human	genbank	54_36p	1	reviewed	silent	c.66	p.V22	0.17	NULL	"superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2"	-	no_errors
BPI	671	genome.wustl.edu	36	20	36385777	36385777	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	36385777	36385777	T	C	SNP	BPI	NM_001725	human	genbank	54_36p	1	reviewed	missense	c.860	p.L287P	0.82	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom"	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP"	-	no_errors
FAM83D	81610	genome.wustl.edu	36	20	37013649	37013649	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	37013649	37013649	G	T	SNP	FAM83D	NM_030919	human	genbank	54_36p	1	validated	missense	c.920	p.G307V	1	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease,PatternScan_AA_TRNA_LIGASE_I"	-	no_errors
FAM83D	81610	genome.wustl.edu	36	20	37014247	37014247	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	37014247	37014247	G	T	SNP	FAM83D	NM_030919	human	genbank	54_36p	1	validated	missense	c.1518	p.K506N	0.59	NULL	"PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
CDC25B	994	genome.wustl.edu	36	20	3731558	3731558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	3731558	3731558	C	G	SNP	CDC25B	NM_021873	human	genbank	54_36p	1	reviewed	missense	c.1196	p.A399G	1	superfamily_Rhodanese/Cell cycle control phosphatase	"HMMPfam_M-inducer_phosp,superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese"	-	no_errors
TOP1	7150	genome.wustl.edu	36	20	39139642	39139642	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	39139642	39139642	G	T	SNP	TOP1	NM_003286	human	genbank	54_36p	1	reviewed	missense	c.286	p.A96S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LPIN3	64900	genome.wustl.edu	36	20	39412355	39412355	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	20	39412355	39412355	G	T	SNP	LPIN3	NM_022896	human	genbank	54_36p	1	validated	missense	c.1006	p.D336Y	0.02	NULL	"HMMPfam_Lipin_N,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
CHD6	84181	genome.wustl.edu	36	20	39507731	39507731	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	39507731	39507731	C	T	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	missense	c.3865	p.V1289M	1	NULL	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40147880	40147880	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	40147880	40147880	T	C	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.3931	p.T1311A	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40160598	40160598	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	40160598	40160598	C	T	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	silent	c.3780	p.K1260	1	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40204018	40204018	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	40204018	40204018	G	A	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	silent	c.2778	p.A926	1	"HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40739976	40739976	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	40739976	40739976	C	A	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.1097	p.G366V	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40853289	40853289	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	40853289	40853289	G	A	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.446	p.A149V	1	"HMMPfam_MAM,HMMSmart_SM00137"	###############################################################################################################################################################################################################################################################	-	no_errors
IFT52	51098	genome.wustl.edu	36	20	41698011	41698011	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	41698011	41698011	C	G	SNP	IFT52	NM_016004	human	genbank	54_36p	1	validated	missense	c.955	p.P319A	1	NULL	HMMPfam_ABC_transp_aux	-	no_errors
IFT52	51098	genome.wustl.edu	36	20	41704678	41704678	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	41704678	41704678	G	T	SNP	IFT52	NM_016004	human	genbank	54_36p	1	validated	missense	c.1266	p.Q422H	1	NULL	HMMPfam_ABC_transp_aux	-	no_errors
TOX2	84969	genome.wustl.edu	36	20	42126903	42126903	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	42126903	42126903	G	A	SNP	TOX2	NM_001098797	human	genbank	54_36p	1	validated	missense	c.952	p.V318I	1	superfamily_HMG-box	"superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
CSNK2A1	1457	genome.wustl.edu	36	20	426408	426408	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	426408	426408	A	G	SNP	CSNK2A1	NM_001895	human	genbank	54_36p	-1	reviewed	missense	c.383	p.L128S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
RIMS4	140730	genome.wustl.edu	36	20	42818332	42818332	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	42818332	42818332	G	A	SNP	RIMS4	NM_182970	human	genbank	54_36p	-1	validated	silent	c.667	p.L223	1	"superfamily_C2_CaLB,HMMSmart_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
RIMS4	140730	genome.wustl.edu	36	20	42818333	42818333	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	42818333	42818333	C	G	SNP	RIMS4	NM_182970	human	genbank	54_36p	-1	validated	missense	c.666	p.E222D	1	"HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
RIMS4	140730	genome.wustl.edu	36	20	42833460	42833460	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	42833460	42833460	G	A	SNP	RIMS4	NM_182970	human	genbank	54_36p	-1	validated	missense	c.106	p.R36W	1	NULL	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
WFDC10B	280664	genome.wustl.edu	36	20	43746983	43746983	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	43746983	43746983	A	G	SNP	WFDC10B	NM_172131	human	genbank	54_36p	-1	reviewed	missense	c.170	p.I57T	0	NULL	NULL	-	no_errors
ZSWIM3	140831	genome.wustl.edu	36	20	43938876	43938876	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	43938876	43938876	T	A	SNP	ZSWIM3	NM_080752	human	genbank	54_36p	1	validated	missense	c.272	p.L91Q	0.99	NULL	"HMMPfam_MULE,HMMPfam_SWIM,HMMSmart_ZnF_PMZ"	-	no_errors
CDH22	64405	genome.wustl.edu	36	20	44248970	44248970	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	44248970	44248970	C	T	SNP	CDH22	NM_021248	human	genbank	54_36p	-1	reviewed	missense	c.1447	p.A483T	0.24	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
SLC35C2	51006	genome.wustl.edu	36	20	44417897	44417897	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	44417897	44417897	G	A	SNP	SLC35C2	NM_015945	human	genbank	54_36p	-1	reviewed	missense	c.359	p.A120V	1	PatternScan_ADH_SHORT	"PatternScan_ADH_SHORT,HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE"	-	no_errors
SLC13A3	64849	genome.wustl.edu	36	20	44672535	44672535	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	44672535	44672535	C	A	SNP	SLC13A3	NM_022829	human	genbank	54_36p	-1	reviewed	missense	c.498	p.K166N	0.88	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp	-	no_errors
ZMYND8	23613	genome.wustl.edu	36	20	45324569	45324569	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	45324569	45324569	G	A	SNP	ZMYND8	NM_183047	human	genbank	54_36p	-1	reviewed	silent	c.1491	p.A497	0.99	NULL	"superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1"	-	no_errors
NCOA3	8202	genome.wustl.edu	36	20	45696310	45696310	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	45696310	45696310	A	T	SNP	NCOA3	NM_181659	human	genbank	54_36p	1	reviewed	missense	c.1076	p.D359V	1	superfamily_PYP-like sensor domain (PAS domain)	###############################################################################################################################################################################################################################################################	-	no_errors
NCOA3	8202	genome.wustl.edu	36	20	45711202	45711202	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	45711202	45711202	C	G	SNP	NCOA3	NM_181659	human	genbank	54_36p	1	reviewed	missense	c.3593	p.P1198R	0.49	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
RASSF2	9770	genome.wustl.edu	36	20	4714926	4714926	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	4714926	4714926	G	C	SNP	RASSF2	NM_014737	human	genbank	54_36p	-1	reviewed	missense	c.862	p.Q288E	1	NULL	"HMMSmart_RA,HMMPfam_RA"	-	no_errors
STAU1	6780	genome.wustl.edu	36	20	47173074	47173074	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	47173074	47173074	C	G	SNP	STAU1	NM_017453	human	genbank	54_36p	-1	reviewed	missense	c.928	p.E310Q	0.99	"superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358"	"superfamily_dsRNA-binding domain-like,HMMSmart_SM00358,HMMPfam_dsrm"	-	no_errors
RASSF2	9770	genome.wustl.edu	36	20	4718300	4718300	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	4718300	4718300	C	T	SNP	RASSF2	NM_014737	human	genbank	54_36p	-1	reviewed	missense	c.581	p.R194H	1	"HMMPfam_RA,HMMSmart_RA"	"HMMPfam_RA,HMMSmart_RA"	-	no_errors
STAU1	6780	genome.wustl.edu	36	20	47185799	47185799	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	47185799	47185799	C	T	SNP	STAU1	NM_017453	human	genbank	54_36p	-1	reviewed	missense	c.587	p.R196Q	1	"HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like"	"HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like"	-	no_errors
RASSF2	9770	genome.wustl.edu	36	20	4724554	4724554	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	4724554	4724554	G	T	SNP	RASSF2	NM_014737	human	genbank	54_36p	-1	reviewed	missense	c.194	p.P65H	1	NULL	"HMMPfam_RA,HMMSmart_RA"	-	no_errors
ZNFX1	57169	genome.wustl.edu	36	20	47299430	47299430	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	47299430	47299430	T	C	SNP	ZNFX1	NM_021035	human	genbank	54_36p	-1	validated	missense	c.3538	p.R1180G	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_zf-NF-X1,HMMSmart_SM00438"	-	no_errors
PTGIS	5740	genome.wustl.edu	36	20	47564276	47564276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	47564276	47564276	C	A	SNP	PTGIS	NM_000961	human	genbank	54_36p	-1	reviewed	missense	c.919	p.A307S	0.98	"superfamily_Cytochrome_P450,HMMPfam_p450"	"PatternScan_CYTOCHROME_P450,superfamily_Cytochrome_P450,HMMPfam_p450"	-	no_errors
RNF114	55905	genome.wustl.edu	36	20	47991590	47991590	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	47991590	47991590	C	T	SNP	RNF114	NM_018683	human	genbank	54_36p	1	validated	nonsense	c.226	p.R76*	0.99	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
SLC23A2	9962	genome.wustl.edu	36	20	4831179	4831179	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	4831179	4831179	C	G	SNP	SLC23A2	NM_005116	human	genbank	54_36p	-1	reviewed	missense	c.233	p.S78T	1	NULL	"HMMPfam_Xan_ur_permease,PatternScan_XANTH_URACIL_PERMASE"	-	no_errors
FAM65C	140876	genome.wustl.edu	36	20	48643093	48643093	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	48643093	48643093	G	A	SNP	FAM65C	NM_080829	human	genbank	54_36p	-1	predicted	missense	c.2248	p.P750S	0.05	NULL	NULL	-	no_errors
ADNP	23394	genome.wustl.edu	36	20	48942590	48942590	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	48942590	48942590	C	T	SNP	ADNP	NM_015339	human	genbank	54_36p	-1	reviewed	missense	c.2068	p.V690I	1	NULL	"PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
MOCS3	27304	genome.wustl.edu	36	20	49008919	49008919	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	49008919	49008919	C	A	SNP	MOCS3	NM_014484	human	genbank	54_36p	1	reviewed	missense	c.133	p.P45T	0	NULL	"superfamily_MoeB,HMMPfam_ThiF,HMMPfam_MoeZ_MoeB,superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD"	-	no_errors
NFATC2	4773	genome.wustl.edu	36	20	49573866	49573866	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	49573866	49573866	C	T	SNP	NFATC2	NM_173091	human	genbank	54_36p	-1	reviewed	silent	c.321	p.S107	1	NULL	"superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
ATP9A	10079	genome.wustl.edu	36	20	49726099	49726099	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	49726099	49726099	A	T	SNP	ATP9A	NM_006045	human	genbank	54_36p	-1	validated	missense	c.855	p.N285K	1	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ATP9A	10079	genome.wustl.edu	36	20	49744045	49744045	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	49744045	49744045	G	A	SNP	ATP9A	NM_006045	human	genbank	54_36p	-1	validated	missense	c.551	p.S184L	1	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A"	"HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
TSHZ2	128553	genome.wustl.edu	36	20	51305318	51305318	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	51305318	51305318	A	C	SNP	TSHZ2	NM_173485	human	genbank	54_36p	1	validated	missense	c.1914	p.E638D	0.28	NULL	"PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX,HMMPfam_Homeobox,HMMPfam_zf-C2H2"	-	no_errors
BCAS1	8537	genome.wustl.edu	36	20	52045883	52045883	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	52045883	52045883	A	G	SNP	BCAS1	NM_003657	human	genbank	54_36p	-1	reviewed	silent	c.837	p.A279	0	NULL	NULL	-	no_errors
PROKR2	128674	genome.wustl.edu	36	20	5230949	5230949	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	5230949	5230949	G	A	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	missense	c.892	p.R298C	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CBLN4	140689	genome.wustl.edu	36	20	54007121	54007121	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	54007121	54007121	G	T	SNP	CBLN4	NM_080617	human	genbank	54_36p	-1	reviewed	missense	c.505	p.L169I	1	"HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q"	"HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q"	-	no_errors
CBLN4	140689	genome.wustl.edu	36	20	54012421	54012421	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	54012421	54012421	C	T	SNP	CBLN4	NM_080617	human	genbank	54_36p	-1	reviewed	missense	c.214	p.A72T	1	"HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like"	"HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like"	-	no_errors
CBLN4	140689	genome.wustl.edu	36	20	54012484	54012484	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	54012484	54012484	C	A	SNP	CBLN4	NM_080617	human	genbank	54_36p	-1	reviewed	missense	c.151	p.D51Y	1	NULL	"HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like"	-	no_errors
AURKA	6790	genome.wustl.edu	36	20	54381930	54381930	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	54381930	54381930	T	C	SNP	AURKA	NM_003600	human	genbank	54_36p	-1	reviewed	silent	c.795	p.G265	0.87	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CASS4	57091	genome.wustl.edu	36	20	54460399	54460399	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	54460399	54460399	A	T	SNP	CASS4	NM_020356	human	genbank	54_36p	1	validated	missense	c.760	p.S254C	0	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_Serine_rich"	-	no_errors
ZBP1	81030	genome.wustl.edu	36	20	55624752	55624752	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	20	55624752	55624752	A	C	SNP	ZBP1	NM_030776	human	genbank	54_36p	-1	provisional	silent	c.213	p.T71	0	HMMSmart_SM00550	"HMMPfam_z-alpha,HMMSmart_SM00550,superfamily_Winged helix DNA-binding domain"	-	no_errors
APCDD1L	164284	genome.wustl.edu	36	20	56479111	56479111	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	56479111	56479111	T	C	SNP	APCDD1L	NM_153360	human	genbank	54_36p	-1	provisional	missense	c.148	p.I50V	0.03	NULL	NULL	-	no_errors
GNAS	2778	genome.wustl.edu	36	20	56913889	56913889	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	56913889	56913889	C	G	SNP	GNAS	NM_001077488	human	genbank	54_36p	1	reviewed	nonsense	c.492	p.Y164*	0.98	"HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert"	"HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert"	-	no_errors
PHACTR3	116154	genome.wustl.edu	36	20	57751719	57751719	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	57751719	57751719	G	A	SNP	PHACTR3	NM_080672	human	genbank	54_36p	1	reviewed	splice_site	c.280+1	e2+1	1	-	-	-	no_errors
SYCP2	10388	genome.wustl.edu	36	20	57874784	57874784	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	57874784	57874784	T	A	SNP	SYCP2	NM_014258	human	genbank	54_36p	-1	reviewed	nonsense	c.4279	p.K1427*	1	NULL	NULL	-	no_errors
SYCP2	10388	genome.wustl.edu	36	20	57888752	57888752	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	57888752	57888752	C	T	SNP	SYCP2	NM_014258	human	genbank	54_36p	-1	reviewed	splice_site	c.2941+1	e29+1	1	-	-	-	no_errors
C20orf177	63939	genome.wustl.edu	36	20	57953306	57953306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	57953306	57953306	C	T	SNP	C20orf177	NM_022106	human	genbank	54_36p	1	predicted	missense	c.913	p.R305C	0.28	NULL	NULL	-	no_errors
CDH26	60437	genome.wustl.edu	36	20	58000879	58000879	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	58000879	58000879	C	T	SNP	CDH26	NM_177980	human	genbank	54_36p	1	reviewed	silent	c.1335	p.S445	0.05	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
CDH26	60437	genome.wustl.edu	36	20	58002852	58002852	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	58002852	58002852	C	G	SNP	CDH26	NM_177980	human	genbank	54_36p	1	reviewed	missense	c.1579	p.L527V	0.6	"HMMPfam_Cadherin,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH26	60437	genome.wustl.edu	36	20	58004364	58004364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	58004364	58004364	G	A	SNP	CDH26	NM_177980	human	genbank	54_36p	1	reviewed	missense	c.1748	p.G583E	0.95	"HMMPfam_Cadherin,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CHGB	1114	genome.wustl.edu	36	20	5852197	5852197	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	5852197	5852197	A	T	SNP	CHGB	NM_001819	human	genbank	54_36p	1	reviewed	missense	c.1407	p.R469S	0.06	HMMPfam_Granin	"HMMPfam_Granin,PatternScan_GRANINS_2,PatternScan_GRANINS_1"	-	no_errors
FERMT1	55612	genome.wustl.edu	36	20	6005909	6005909	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	6005909	6005909	C	T	SNP	FERMT1	NM_017671	human	genbank	54_36p	-1	validated	missense	c.1945	p.G649S	1	NULL	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,PatternScan_FERM_2"	-	no_errors
SS18L1	26039	genome.wustl.edu	36	20	60173926	60173926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	60173926	60173926	C	T	SNP	SS18L1	NM_198935	human	genbank	54_36p	1	validated	missense	c.877	p.R293W	0.71	NULL	HMMPfam_SSXT	-	no_errors
SLCO4A1	28231	genome.wustl.edu	36	20	60762296	60762296	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	60762296	60762296	C	T	SNP	SLCO4A1	NM_016354	human	genbank	54_36p	1	validated	silent	c.975	p.A325	0.03	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	"HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
DIDO1	11083	genome.wustl.edu	36	20	60998403	60998403	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	60998403	60998403	C	T	SNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	missense	c.1979	p.S660N	0	superfamily_Elongation factor TFIIS domain 2	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC"	-	no_errors
DIDO1	11083	genome.wustl.edu	36	20	61009072	61009072	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	20	61009072	61009072	C	T	SNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	missense	c.1246	p.D416N	1	NULL	"HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
LOC643503	643503	genome.wustl.edu	36	20	6129907	6129907	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	6129907	6129907	G	C	SNP	LOC643503	XM_001725260	human	genbank	54_36p	-1	model	missense	c.569	p.A190G	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360"	-	pseudogene
YTHDF1	54915	genome.wustl.edu	36	20	61305139	61305139	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	61305139	61305139	C	T	SNP	YTHDF1	NM_017798	human	genbank	54_36p	-1	validated	missense	c.598	p.V200I	1	NULL	HMMPfam_YTH	-	no_errors
TPD52L2	7165	genome.wustl.edu	36	20	61977628	61977628	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	61977628	61977628	T	A	SNP	TPD52L2	NM_199360	human	genbank	54_36p	1	validated	silent	c.330	p.S110	1	HMMPfam_TPD52	HMMPfam_TPD52	-	no_errors
MYT1	4661	genome.wustl.edu	36	20	62313927	62313927	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	62313927	62313927	G	A	SNP	MYT1	NM_004535	human	genbank	54_36p	1	reviewed	silent	c.1509	p.T503	0.64	"HMMPfam_zf-C2HC,superfamily_SSF103637"	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1"	-	no_errors
MYT1	4661	genome.wustl.edu	36	20	62342189	62342189	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	62342189	62342189	G	C	SNP	MYT1	NM_004535	human	genbank	54_36p	1	reviewed	missense	c.3310	p.E1104Q	1	NULL	"HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_SSF103637"	-	no_errors
C20orf54	113278	genome.wustl.edu	36	20	693986	693986	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	693986	693986	C	G	SNP	C20orf54	NM_033409	human	genbank	54_36p	-1	validated	missense	c.433	p.E145Q	1	NULL	HMMPfam_DUF1011	-	no_errors
HAO1	54363	genome.wustl.edu	36	20	7869060	7869060	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	7869060	7869060	G	A	SNP	HAO1	NM_017545	human	genbank	54_36p	-1	reviewed	missense	c.10	p.R4W	0.05	superfamily_FMN-linked oxidoreductases	"superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh,PatternScan_FMN_HYDROXY_ACID_DH_1"	-	no_errors
ANGPT4	51378	genome.wustl.edu	36	20	806888	806888	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	806888	806888	C	T	SNP	ANGPT4	NM_015985	human	genbank	54_36p	-1	reviewed	missense	c.1136	p.R379H	0.97	"HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C"	"HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
PLCB4	5332	genome.wustl.edu	36	20	9236464	9236464	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	9236464	9236464	G	A	SNP	PLCB4	NM_000933	human	genbank	54_36p	1	reviewed	missense	c.3	p.M1I	1	NULL	"superfamily_SSF50729,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1154"	-	no_errors
PAK7	57144	genome.wustl.edu	36	20	9494755	9494755	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	9494755	9494755	G	C	SNP	PAK7	NM_020341	human	genbank	54_36p	-1	reviewed	missense	c.1267	p.Q423E	1	NULL	"PatternScan_PROTEIN_KINASE_ST,HMMPfam_PBD,HMMSmart_PBD,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
PAK7	57144	genome.wustl.edu	36	20	9509002	9509002	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	9509002	9509002	G	A	SNP	PAK7	NM_020341	human	genbank	54_36p	-1	reviewed	silent	c.780	p.S260	1	NULL	"HMMPfam_PBD,HMMSmart_PBD,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
KDM5B	10765	genome.wustl.edu	36	1	200978198	200978199	+	Frame_Shift_Ins	INS	-	C	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	-	-	C	C	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	1	200978198	200978199	-	C	INS	JARID1B	NM_006618	human	genbank	54_36p	-1	validated	frame_shift_ins	c.2533_2532	p.F844fs	1.000:0.984	HMMPfam_PLU-1	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1"	-	no_errors
LOC100132639	100132639	genome.wustl.edu	36	17	20358529	20358529	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	20358529	20358529	G	T	SNP	LOC100132639	XM_001716566	human	genbank	54_36p	1	model	silent	c.846	p.L282	1	NULL	NULL	-	no_errors
LOC100129743	100129743	genome.wustl.edu	36	2	203613403	203613403	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	203613403	203613403	C	T	SNP	LOC100129743	XM_001724736	human	genbank	54_36p	1	model	missense	c.328	p.L110F	0.92	"HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30"	"HMMPfam_Ribosomal_L30,superfamily_Ribosomal protein L30p/L7e,PatternScan_RIBOSOMAL_L30"	-	pseudogene
LOC100129842	100129842	genome.wustl.edu	36	19	20520119	20520119	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	20520119	20520119	G	T	SNP	LOC100129842	XR_042310	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.05	-	-	-	no_errors
LOC100131961	100131961	genome.wustl.edu	36	1	208507095	208507095	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	208507095	208507095	G	A	SNP	LOC100131961	XR_036984	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.96	-	-	-	pseudogene
IGLV10-54	28772	genome.wustl.edu	36	22	20899407	20899407	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	20899407	20899407	G	T	SNP	IGLV10-54	ENST00000390287	human	ensembl	54_36p	1	known	missense	c.99	p.L33F	0.01	"HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
POTED	317754	genome.wustl.edu	36	21	13904872	13904872	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	13904872	13904872	A	G	SNP	POTED	NM_174981	human	genbank	54_36p	1	validated	missense	c.452	p.K151R	0.01	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
POTED	317754	genome.wustl.edu	36	21	13914436	13914436	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	13914436	13914436	A	G	SNP	POTED	NM_174981	human	genbank	54_36p	1	validated	missense	c.1004	p.D335G	0.02	"HMMPfam_Ank,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
LOC653108	653108	genome.wustl.edu	36	21	13971336	13971336	+	RNA	SNP	C	T	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	13971336	13971336	C	T	SNP	LOC653108	XR_016129	human	genbank	54_36p	1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
LOC441957	441957	genome.wustl.edu	36	21	14058087	14058087	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	21	14058087	14058087	C	G	SNP	LOC441957	XR_016199	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000215561	0	genome.wustl.edu	36	21	14228174	14228174	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	21	14228174	14228174	C	A	SNP	ENSG00000215561	ENST00000400582	human	ensembl	54_36p	-1	known	missense	c.825	p.E275D	0.38	NULL	NULL	-	no_start_codon
LIPI	149998	genome.wustl.edu	36	21	14457677	14457677	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	14457677	14457677	T	A	SNP	LIPI	NM_198996	human	genbank	54_36p	-1	validated	missense	c.1003	p.R335W	0.01	"HMMPfam_Lipase,superfamily_SSF53474"	"HMMPfam_Lipase,superfamily_SSF53474"	-	no_errors
SAMSN1	64092	genome.wustl.edu	36	21	14792667	14792667	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	14792667	14792667	G	A	SNP	SAMSN1	NM_022136	human	genbank	54_36p	-1	validated	silent	c.886	p.L296	1	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
SAMSN1	64092	genome.wustl.edu	36	21	14794923	14794923	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	14794923	14794923	C	T	SNP	SAMSN1	NM_022136	human	genbank	54_36p	-1	validated	missense	c.566	p.G189E	1	"HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2"	"HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_SH3_2"	-	no_errors
USP25	29761	genome.wustl.edu	36	21	16164305	16164305	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	16164305	16164305	C	G	SNP	USP25	NM_013396	human	genbank	54_36p	1	validated	silent	c.2643	p.L881	1	NULL	"superfamily_UBA-like,HMMPfam_UIM,HMMSmart_SM00726,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP25	29761	genome.wustl.edu	36	21	16172022	16172022	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	16172022	16172022	G	C	SNP	USP25	NM_013396	human	genbank	54_36p	1	validated	missense	c.2836	p.G946R	1	NULL	"HMMPfam_UCH,HMMPfam_UIM,HMMSmart_SM00726,superfamily_UBA-like,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
CXADR	1525	genome.wustl.edu	36	21	17846071	17846071	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	17846071	17846071	T	A	SNP	CXADR	NM_001338	human	genbank	54_36p	1	reviewed	missense	c.344	p.I115N	1	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_I-set"	-	no_errors
NCAM2	4685	genome.wustl.edu	36	21	21574817	21574817	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	21574817	21574817	G	C	SNP	NCAM2	NM_004540	human	genbank	54_36p	1	reviewed	missense	c.104	p.G35A	1	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
NCAM2	4685	genome.wustl.edu	36	21	21632585	21632585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	21632585	21632585	C	T	SNP	NCAM2	NM_004540	human	genbank	54_36p	1	reviewed	missense	c.904	p.P302S	1	NULL	"HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
GABPA	2551	genome.wustl.edu	36	21	26043285	26043285	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	26043285	26043285	A	C	SNP	GABPA	NM_002040	human	genbank	54_36p	1	validated	missense	c.290	p.Q97P	1	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
APP	351	genome.wustl.edu	36	21	26406308	26406308	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	26406308	26406308	C	A	SNP	APP	NM_000484	human	genbank	54_36p	-1	reviewed	silent	c.84	p.L28	1	"HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain"	###############################################################################################################################################################################################################################################################	-	no_errors
LTN1	26046	genome.wustl.edu	36	21	29225362	29225362	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	29225362	29225362	G	T	SNP	RNF160	NM_015565	human	genbank	54_36p	-1	validated	missense	c.5224	p.H1742N	1	"superfamily_RING/U-box,HMMSmart_SM00744,HMMPfam_zf-C3HC4"	"superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00744,HMMPfam_zf-C3HC4"	-	no_errors
LTN1	26046	genome.wustl.edu	36	21	29280389	29280389	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	29280389	29280389	G	A	SNP	RNF160	NM_015565	human	genbank	54_36p	-1	validated	missense	c.287	p.T96I	1	superfamily_ARM repeat	"HMMSmart_SM00744,superfamily_ARM repeat,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
C21orf7	56911	genome.wustl.edu	36	21	29454222	29454222	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	29454222	29454222	G	C	SNP	C21orf7	NM_020152	human	genbank	54_36p	1	provisional	missense	c.522	p.K174N	1	NULL	NULL	-	no_errors
C21orf7	56911	genome.wustl.edu	36	21	29468986	29468986	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	29468986	29468986	A	-	DEL	C21orf7	NM_020152	human	genbank	54_36p	1	provisional	frame_shift_del	c.631	p.T211fs	0.9	NULL	NULL	"(deletion:cds_exon[29468904,29469084])"	no_errors
CLDN17	26285	genome.wustl.edu	36	21	30460663	30460663	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	30460663	30460663	T	A	SNP	CLDN17	NM_012131	human	genbank	54_36p	-1	provisional	missense	c.144	p.E48D	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
KRTAP13-3	337960	genome.wustl.edu	36	21	30719843	30719843	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	30719843	30719843	T	G	SNP	KRTAP13-3	NM_181622	human	genbank	54_36p	-1	provisional	missense	c.259	p.M87L	0	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
TIAM1	7074	genome.wustl.edu	36	21	31560651	31560651	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	31560651	31560651	G	A	SNP	TIAM1	NM_003253	human	genbank	54_36p	-1	validated	missense	c.509	p.S170F	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_RBD,HMMSmart_RBD,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1"	-	no_errors
C21orf63	59271	genome.wustl.edu	36	21	32809077	32809077	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	32809077	32809077	A	G	SNP	C21orf63	NM_058187	human	genbank	54_36p	1	validated	silent	c.1032	p.R344	0.13	NULL	HMMPfam_Gal_Lectin	-	no_errors
C21orf63	59271	genome.wustl.edu	36	21	32809250	32809250	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	32809250	32809250	G	T	SNP	C21orf63	NM_058187	human	genbank	54_36p	1	validated	missense	c.1205	p.S402I	0.04	NULL	HMMPfam_Gal_Lectin	-	no_errors
SYNJ1	8867	genome.wustl.edu	36	21	32933092	32933092	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	32933092	32933092	C	T	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	silent	c.3912	p.P1304	0.74	NULL	"HMMPfam_Syja_N,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD"	-	no_errors
SYNJ1	8867	genome.wustl.edu	36	21	32979982	32979982	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	32979982	32979982	G	C	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	silent	c.1065	p.V355	1	NULL	"HMMSmart_SM00128,HMMPfam_Syja_N,HMMPfam_Exo_endo_phos,superfamily_DNase I-like,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD"	-	no_errors
C21orf62	56245	genome.wustl.edu	36	21	33088423	33088423	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	33088423	33088423	C	A	SNP	C21orf62	NM_019596	human	genbank	54_36p	-1	validated	missense	c.180	p.M60I	1	NULL	NULL	-	no_errors
ATP5O	539	genome.wustl.edu	36	21	34206471	34206471	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	34206471	34206471	T	C	SNP	ATP5O	NM_001697	human	genbank	54_36p	-1	reviewed	missense	c.190	p.R64G	0.46	"superfamily_N-terminal domain of the delta subunit of the F1F0-ATP synthase,HMMPfam_OSCP"	"superfamily_N-terminal domain of the delta subunit of the F1F0-ATP synthase,HMMPfam_OSCP,PatternScan_ATPASE_DELTA"	-	no_errors
SLC5A3	6526	genome.wustl.edu	36	21	34389965	34389965	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	34389965	34389965	A	G	SNP	SLC5A3	NM_006933	human	genbank	54_36p	1	validated	missense	c.598	p.M200V	1	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
KCNE1	3753	genome.wustl.edu	36	21	34743419	34743419	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	34743419	34743419	G	T	SNP	KCNE1	NM_000219	human	genbank	54_36p	-1	reviewed	silent	c.384	p.S128	0	HMMPfam_ISK_Channel	HMMPfam_ISK_Channel	-	no_errors
KCNE1	3753	genome.wustl.edu	36	21	34743717	34743717	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	34743717	34743717	C	T	SNP	KCNE1	NM_000219	human	genbank	54_36p	-1	reviewed	missense	c.86	p.G29D	0.03	HMMPfam_ISK_Channel	HMMPfam_ISK_Channel	-	no_errors
CHAF1B	8208	genome.wustl.edu	36	21	36680416	36680416	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	36680416	36680416	G	T	SNP	CHAF1B	NM_005441	human	genbank	54_36p	1	reviewed	missense	c.112	p.D38Y	1	"HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40"	"HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
HLCS	3141	genome.wustl.edu	36	21	37231367	37231367	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	37231367	37231367	C	T	SNP	HLCS	NM_000411	human	genbank	54_36p	-1	validated	missense	c.248	p.S83N	0	NULL	"superfamily_SSF55681,HMMPfam_BPL_LipA_LipB,HMMPfam_BPL_C"	-	no_errors
TTC3	7267	genome.wustl.edu	36	21	37418871	37418871	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	37418871	37418871	A	G	SNP	TTC3	NM_001001894	human	genbank	54_36p	1	validated	missense	c.1192	p.I398V	0.02	"superfamily_SSF48452,superfamily_Spectrin"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,superfamily_Spectrin,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
TTC3	7267	genome.wustl.edu	36	21	37459747	37459747	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	37459747	37459747	C	G	SNP	TTC3	NM_001001894	human	genbank	54_36p	1	validated	missense	c.3361	p.H1121D	0.97	"superfamily_Spectrin,superfamily_SSF48452"	"HMMPfam_TPR_1,HMMSmart_RING,HMMPfam_zf-C3HC4,HMMSmart_TPR,superfamily_Spectrin,superfamily_SSF48452,superfamily_SSF57850"	-	no_errors
DSCR4	10281	genome.wustl.edu	36	21	38348854	38348854	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	38348854	38348854	T	C	SNP	DSCR4	NM_005867	human	genbank	54_36p	-1	reviewed	missense	c.322	p.R108G	0	NULL	NULL	-	no_errors
ERG	2078	genome.wustl.edu	36	21	38677670	38677670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	38677670	38677670	G	A	SNP	ERG	NM_182918	human	genbank	54_36p	-1	validated	missense	c.965	p.S322L	1	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS"	"superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
ETS2	2114	genome.wustl.edu	36	21	39113551	39113551	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	39113551	39113551	G	T	SNP	ETS2	NM_005239	human	genbank	54_36p	1	validated	missense	c.1066	p.G356C	1	superfamily_SSF46785	"superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
LOC391282	391282	genome.wustl.edu	36	21	39421767	39421767	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	39421767	39421767	G	A	SNP	LOC391282	XM_372878	human	genbank	54_36p	1	model	silent	c.432	p.K144	0.99	"superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L23"	"HMMPfam_Ribosomal_L23eN,superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L23"	-	pseudogene
BRWD1	54014	genome.wustl.edu	36	21	39568229	39568229	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	39568229	39568229	C	A	SNP	BRWD1	NM_018963	human	genbank	54_36p	-1	reviewed	missense	c.1185	p.W395C	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
DSCAM	1826	genome.wustl.edu	36	21	40345871	40345871	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	40345871	40345871	T	G	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	missense	c.5069	p.D1690A	1	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
DSCAM	1826	genome.wustl.edu	36	21	40427701	40427701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	40427701	40427701	G	A	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	missense	c.3512	p.A1171V	0.99	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
DSCAM	1826	genome.wustl.edu	36	21	40647355	40647355	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	40647355	40647355	C	T	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	missense	c.841	p.E281K	1	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
MX2	4600	genome.wustl.edu	36	21	41671777	41671777	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	41671777	41671777	C	T	SNP	MX2	NM_002463	human	genbank	54_36p	1	reviewed	silent	c.441	p.S147	0.99	"HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN"	"HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_GED"	-	no_errors
RIPK4	54101	genome.wustl.edu	36	21	42034499	42034499	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42034499	42034499	C	T	SNP	RIPK4	ENST00000330470	human	ensembl	54_36p	-1	known	missense	c.1132	p.A378T	1	NULL	"HMMPfam_Pkinase_Tyr,superfamily_Ankyrin repeat,PatternScan_ASP_PROTEASE,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
RIPK4	54101	genome.wustl.edu	36	21	42034550	42034550	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42034550	42034550	G	C	SNP	RIPK4	NM_020639	human	genbank	54_36p	-1	reviewed	missense	c.1872	p.I624M	0.9	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
C2CD2	25966	genome.wustl.edu	36	21	42200854	42200854	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42200854	42200854	C	G	SNP	C2CD2	NM_015500	human	genbank	54_36p	-1	validated	missense	c.1127	p.G376A	1	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
ZNF295	49854	genome.wustl.edu	36	21	42284519	42284519	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42284519	42284519	T	G	SNP	ZNF295	NM_001098402	human	genbank	54_36p	-1	validated	missense	c.2755	p.T919P	0.99	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
UMODL1	89766	genome.wustl.edu	36	21	42406940	42406940	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42406940	42406940	C	A	SNP	UMODL1	NM_173568	human	genbank	54_36p	1	validated	missense	c.2677	p.H893N	0.06	"superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060"	###############################################################################################################################################################################################################################################################	-	no_errors
ABCG1	9619	genome.wustl.edu	36	21	42583288	42583288	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42583288	42583288	G	A	SNP	ABCG1	NM_004915	human	genbank	54_36p	1	reviewed	silent	c.1320	p.L440	0.85	HMMPfam_ABC2_membrane	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane"	-	no_errors
TMPRSS3	64699	genome.wustl.edu	36	21	42669753	42669753	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42669753	42669753	G	T	SNP	TMPRSS3	NM_024022	human	genbank	54_36p	-1	reviewed	missense	c.1160	p.A387E	1	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	###############################################################################################################################################################################################################################################################	-	no_errors
UBASH3A	53347	genome.wustl.edu	36	21	42711737	42711737	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42711737	42711737	G	A	SNP	UBASH3A	NM_018961	human	genbank	54_36p	1	validated	silent	c.996	p.P332	0.75	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"superfamily_UBA-like,HMMPfam_UBA,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Phosphoglycerate mutase-like,HMMPfam_PGAM"	-	no_errors
UBASH3A	53347	genome.wustl.edu	36	21	42740301	42740301	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42740301	42740301	C	G	SNP	UBASH3A	NM_018961	human	genbank	54_36p	1	validated	missense	c.1914	p.N638K	0.11	superfamily_Phosphoglycerate mutase-like	"HMMPfam_UBA,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_UBA-like,HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like"	-	no_errors
TRAPPC10	7109	genome.wustl.edu	36	21	44276400	44276400	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	44276400	44276400	G	A	SNP	TRAPPC10	NM_003274	human	genbank	54_36p	1	reviewed	missense	c.68	p.C23Y	1	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
KRTAP10-9	386676	genome.wustl.edu	36	21	44871722	44871722	+	Nonsense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	44871722	44871722	C	G	SNP	KRTAP10-9	NM_198690	human	genbank	54_36p	1	validated	nonsense	c.206	p.S69*	0.11	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRTAP10-11	386678	genome.wustl.edu	36	21	44890836	44890836	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	21	44890836	44890836	C	T	SNP	KRTAP10-11	NM_198692	human	genbank	54_36p	1	validated	silent	c.33	p.S11	0.09	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRTAP10-11	386678	genome.wustl.edu	36	21	44891299	44891299	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	44891299	44891299	T	C	SNP	KRTAP10-11	NM_198692	human	genbank	54_36p	1	validated	missense	c.496	p.S166P	0	NULL	HMMPfam_Keratin_B2	-	no_errors
PTTG1IP	754	genome.wustl.edu	36	21	45100669	45100669	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	45100669	45100669	C	G	SNP	PTTG1IP	NM_004339	human	genbank	54_36p	-1	reviewed	missense	c.316	p.G106R	0.87	NULL	HMMSmart_SM00423	-	no_errors
ITGB2	3689	genome.wustl.edu	36	21	45151408	45151408	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	21	45151408	45151408	T	G	SNP	ITGB2	NM_000211	human	genbank	54_36p	-1	reviewed	missense	c.178	p.I60L	0	"HMMSmart_PSI,HMMPfam_Integrin_beta,HMMSmart_INB"	###############################################################################################################################################################################################################################################################	-	no_errors
COL6A1	1291	genome.wustl.edu	36	21	46246965	46246965	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	46246965	46246965	C	G	SNP	COL6A1	NM_001848	human	genbank	54_36p	1	reviewed	missense	c.2347	p.R783G	0.01	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen"	-	no_errors
C21orf57	54059	genome.wustl.edu	36	21	46535738	46535738	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	46535738	46535738	T	G	SNP	C21orf57	NM_058181	human	genbank	54_36p	1	validated	missense	c.273	p.I91M	0.99	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_UPF0054"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_UPF0054,PatternScan_UPF0054"	-	no_errors
C21orf57	54059	genome.wustl.edu	36	21	46535743	46535743	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	46535743	46535743	T	C	SNP	C21orf57	NM_058181	human	genbank	54_36p	1	validated	missense	c.278	p.L93P	1	"HMMPfam_UPF0054,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_UPF0054,PatternScan_UPF0054,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
PCNT	5116	genome.wustl.edu	36	21	46676267	46676267	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	46676267	46676267	C	T	SNP	PCNT	NM_006031	human	genbank	54_36p	1	reviewed	nonsense	c.8461	p.Q2821*	0	NULL	HMMPfam_PACT_coil_coil	-	no_errors
DIP2A	23181	genome.wustl.edu	36	21	46748734	46748734	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	46748734	46748734	G	A	SNP	DIP2A	NM_015151	human	genbank	54_36p	1	reviewed	missense	c.688	p.G230S	1	NULL	"HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	-	no_errors
TPTE	7179	genome.wustl.edu	36	21	9955923	9955923	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	9955923	9955923	C	T	SNP	TPTE	NM_199261	human	genbank	54_36p	-1	validated	missense	c.925	p.V309I	1	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
TPTE	7179	genome.wustl.edu	36	21	9963816	9963816	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	9963816	9963816	G	T	SNP	TPTE	NM_199261	human	genbank	54_36p	-1	validated	missense	c.758	p.S253Y	1	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_Voltage-gated potassium channels"	-	no_errors
uc001wbi.2	0	genome.wustl.edu	36	14	21160479	21160479	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	21160479	21160479	G	A	SNP	uc001wbi.2	ENST00000390422	human	ensembl	54_36p	1	known	missense	c.245	p.S82N	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
IGLV3-12	28802	genome.wustl.edu	36	22	21444931	21444931	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	21444931	21444931	G	A	SNP	IGLV3-12	ENST00000390313	human	ensembl	54_36p	1	known	missense	c.203	p.S68N	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000214873	0	genome.wustl.edu	36	16	21451902	21451902	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	21451902	21451902	T	G	SNP	ENSG00000214873	ENST00000399155	human	ensembl	54_36p	-1	known	silent	c.510	p.A170	0.83	"HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd"	"HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1"	-	no_start_codon:no_stop_codon
IGL@	3535	genome.wustl.edu	36	22	21465262	21465262	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	21465262	21465262	A	T	SNP	IGL@	ENST00000390314	human	ensembl	54_36p	1	known	missense	c.124	p.T42S	0.01	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_stop_codon
uc001wcu.2	0	genome.wustl.edu	36	14	21546075	21546075	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	21546075	21546075	C	T	SNP	uc001wcu.2	ENST00000390447	human	ensembl	54_36p	1	known	silent	c.165	p.F55	0.99	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
SNORA36B	677818	genome.wustl.edu	36	1	218440622	218440622	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	218440622	218440622	C	G	SNP	SNORA36B	NR_002994	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	no_errors
LOC729057	729057	genome.wustl.edu	36	22	14503690	14503690	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22	14503690	14503690	C	T	SNP	LOC729057	XR_042044	human	genbank	54_36p	1	model	rna	NULL	NULL	0.91	-	-	-	no_errors
POTEH	23784	genome.wustl.edu	36	22	14667661	14667661	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22	14667661	14667661	G	A	SNP	POTEH	ENST00000354997	human	ensembl	54_36p	-1	known	silent	c.225	p.S75	0	NULL	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	-	no_errors
CCT8L2	150160	genome.wustl.edu	36	22	15452821	15452821	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	15452821	15452821	G	A	SNP	CCT8L2	NM_014406	human	genbank	54_36p	-1	validated	missense	c.620	p.A207V	0	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like"	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like"	-	no_errors
XKR3	150165	genome.wustl.edu	36	22	15645233	15645233	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	15645233	15645233	A	G	SNP	XKR3	NM_175878	human	genbank	54_36p	-1	validated	missense	c.656	p.I219T	1	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors
CECR2	27443	genome.wustl.edu	36	22	16396909	16396909	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	16396909	16396909	A	G	SNP	CECR2	ENST00000400585	human	ensembl	54_36p	1	known	missense	c.1160	p.K387R	0.56	superfamily_Bromodomain	"superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
DGCR14	8220	genome.wustl.edu	36	22	17507498	17507498	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	17507498	17507498	C	A	SNP	DGCR14	NM_022719	human	genbank	54_36p	-1	reviewed	missense	c.440	p.S147I	1	HMMPfam_Es2	HMMPfam_Es2	-	no_errors
CLTCL1	8218	genome.wustl.edu	36	22	17555514	17555514	+	Nonstop_Mutation	SNP	C	A	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	17555514	17555514	C	A	SNP	CLTCL1	NM_007098	human	genbank	54_36p	-1	reviewed	nonstop	c.4412	p.*1471L	1	NULL	"superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin_propel,HMMPfam_Clathrin-link,superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CLTCL1	8218	genome.wustl.edu	36	22	17589499	17589499	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	17589499	17589499	C	A	SNP	CLTCL1	ENST00000263200	human	ensembl	54_36p	-1	known	missense	c.2536	p.V846L	1	"HMMPfam_Clathrin,HMMSmart_SM00299"	"HMMPfam_Clathrin,HMMSmart_SM00299,HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin-link,superfamily_ARM repeat"	-	no_errors
TBX1	6899	genome.wustl.edu	36	22	18131755	18131755	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	18131755	18131755	C	T	SNP	TBX1	NM_080647	human	genbank	54_36p	1	reviewed	missense	c.590	p.P197L	1	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_2"	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TXNRD2	10587	genome.wustl.edu	36	22	18282798	18282798	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	18282798	18282798	A	T	SNP	TXNRD2	ENST00000400516	human	ensembl	54_36p	-1	known	missense	c.530	p.I177N	0.74	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,PatternScan_PYRIDINE_REDOX_1,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,HMMPfam_Pyr_redox_dim"	-	no_errors
PI4KAP1	728233	genome.wustl.edu	36	22	18765740	18765743	+	RNA	DEL	TGTC	TGTC	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	TGTC	TGTC	TGTC	-	TGTC	TGTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	18765740	18765743	TGTC	-	DEL	PI4KAP1	NR_003563	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1.000:1.000:1.000:1.000	-	-	"(deletion:rna[18765726,18765815])"	pseudogene
AIFM3	150209	genome.wustl.edu	36	22	19658884	19658884	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	19658884	19658884	G	A	SNP	AIFM3	NM_144704	human	genbank	54_36p	1	provisional	missense	c.581	p.S194N	1	superfamily_FAD/NAD(P)-binding domain	"HMMPfam_Rieske,superfamily_ISP domain,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain"	-	no_errors
LZTR1	8216	genome.wustl.edu	36	22	19670180	19670180	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	19670180	19670180	G	T	SNP	LZTR1	NM_006767	human	genbank	54_36p	1	reviewed	missense	c.314	p.W105L	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612,HMMPfam_Kelch_2,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_BTB"	-	no_errors
PPM1F	9647	genome.wustl.edu	36	22	20617785	20617785	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	20617785	20617785	A	G	SNP	PPM1F	NM_014634	human	genbank	54_36p	-1	reviewed	missense	c.725	p.F242S	0.99	"superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG"	"superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG,PatternScan_PP2C"	-	no_errors
IGLV3-22	28795	genome.wustl.edu	36	22	21377142	21377142	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22	21377142	21377142	G	C	SNP	IGLV3-22	ENST00000390307	human	ensembl	54_36p	1	known	missense	c.180	p.Q60H	0.88	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_stop_codon
IGL@	3535	genome.wustl.edu	36	22	21385635	21385635	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	21385635	21385635	G	C	SNP	IGL@	ENST00000390308	human	ensembl	54_36p	1	known	missense	c.298	p.D100H	1	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
RTDR1	27156	genome.wustl.edu	36	22	21731715	21731715	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	21731715	21731715	G	A	SNP	RTDR1	NM_014433	human	genbank	54_36p	-1	reviewed	silent	c.972	p.Y324	0	NULL	"superfamily_ARM-type_fold,HMMPfam_Arm"	-	no_errors
LOC649264	649264	genome.wustl.edu	36	22	22042642	22042642	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22042642	22042642	G	A	SNP	LOC649264	XM_001131286	human	genbank	54_36p	-1	model	missense	c.335	p.S112F	1	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	-	no_errors
LOC645904	645904	genome.wustl.edu	36	22	22132596	22132596	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22132596	22132596	C	T	SNP	LOC645904	XM_928876	human	genbank	54_36p	1	model	silent	c.132	p.T44	0.22	HMMPfam_MAD	HMMPfam_MAD	-	no_errors
RGL4	266747	genome.wustl.edu	36	22	22368801	22368801	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22368801	22368801	G	T	SNP	RGL4	NM_153615	human	genbank	54_36p	1	provisional	missense	c.1087	p.A363S	0.59	"superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF"	"superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF"	-	no_errors
ZNF70	7621	genome.wustl.edu	36	22	22416469	22416469	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22416469	22416469	T	C	SNP	ZNF70	NM_021916	human	genbank	54_36p	-1	provisional	missense	c.859	p.K287E	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SMARCB1	6598	genome.wustl.edu	36	22	22489112	22489112	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22489112	22489112	G	A	SNP	SMARCB1	NM_003073	human	genbank	54_36p	1	reviewed	missense	c.784	p.V262I	1	HMMPfam_SNF5	HMMPfam_SNF5	-	no_errors
DERL3	91319	genome.wustl.edu	36	22	22509304	22509304	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22509304	22509304	G	A	SNP	DERL3	NM_001002862	human	genbank	54_36p	-1	reviewed	silent	c.561	p.D187	0.99	HMMPfam_DER1	HMMPfam_DER1	-	no_errors
CABIN1	23523	genome.wustl.edu	36	22	22821950	22821950	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22821950	22821950	G	A	SNP	CABIN1	NM_012295	human	genbank	54_36p	1	reviewed	silent	c.3843	p.G1281	0.98	NULL	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_MEF2_binding"	-	no_errors
CABIN1	23523	genome.wustl.edu	36	22	22860285	22860285	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22860285	22860285	G	A	SNP	CABIN1	NM_012295	human	genbank	54_36p	1	reviewed	missense	c.4649	p.R1550H	1	NULL	"HMMPfam_TPR_1,HMMPfam_MEF2_binding,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
GGT5	2687	genome.wustl.edu	36	22	22945945	22945945	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	22945945	22945945	C	A	SNP	GGT5	NM_001099781	human	genbank	54_36p	-1	reviewed	missense	c.1757	p.G586V	0.98	NULL	"HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE"	-	no_errors
UPB1	51733	genome.wustl.edu	36	22	23239450	23239450	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	23239450	23239450	C	T	SNP	UPB1	NM_016327	human	genbank	54_36p	1	reviewed	silent	c.618	p.N206	0.99	"superfamily_Carbon-nitrogen hydrolase,HMMPfam_CN_hydrolase"	"superfamily_Carbon-nitrogen hydrolase,HMMPfam_CN_hydrolase"	-	no_errors
UPB1	51733	genome.wustl.edu	36	22	23249597	23249597	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	23249597	23249597	C	G	SNP	UPB1	NM_016327	human	genbank	54_36p	1	reviewed	missense	c.927	p.D309E	1	superfamily_Carbon-nitrogen hydrolase	"HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase"	-	no_errors
SNRPD3	6634	genome.wustl.edu	36	22	23283654	23283654	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	23283654	23283654	T	C	SNP	SNRPD3	NM_004175	human	genbank	54_36p	1	reviewed	silent	c.12	p.G4	1	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
PIWIL3	440822	genome.wustl.edu	36	22	23488369	23488369	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	23488369	23488369	G	C	SNP	PIWIL3	NM_001008496	human	genbank	54_36p	-1	validated	missense	c.98	p.A33G	0	NULL	"superfamily_SSF101690,HMMPfam_PAZ,superfamily_RNaseH_fold,HMMPfam_Piwi"	-	no_errors
SGSM1	129049	genome.wustl.edu	36	22	23570895	23570895	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	23570895	23570895	G	A	SNP	SGSM1	NM_001039948	human	genbank	54_36p	1	validated	missense	c.95	p.R32H	0.97	NULL	"HMMPfam_RUN,HMMSmart_SM00593,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC"	-	no_errors
SGSM1	129049	genome.wustl.edu	36	22	23573735	23573735	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	23573735	23573735	C	T	SNP	SGSM1	NM_001039948	human	genbank	54_36p	1	validated	nonsense	c.274	p.Q92*	1	HMMPfam_RUN	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_RUN,HMMSmart_SM00593"	-	no_errors
MYO18B	84700	genome.wustl.edu	36	22	24718430	24718430	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	24718430	24718430	A	C	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	missense	c.6258	p.E2086D	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ"	-	no_errors
MYO18B	84700	genome.wustl.edu	36	22	24753142	24753142	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22	24753142	24753142	A	G	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	missense	c.7202	p.K2401R	0.04	NULL	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25018759	25018759	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	25018759	25018759	C	T	SNP	SEZ6L	NM_021115	human	genbank	54_36p	1	validated	missense	c.482	p.T161M	0.37	NULL	"superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB"	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25036763	25036763	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	25036763	25036763	C	A	SNP	SEZ6L	NM_021115	human	genbank	54_36p	1	validated	missense	c.1642	p.Q548K	0.88	"HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25066599	25066599	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	25066599	25066599	G	A	SNP	SEZ6L	NM_021115	human	genbank	54_36p	1	validated	splice_site	c.2212+1	e10+1	1	-	-	-	no_errors
SEZ6L	23544	genome.wustl.edu	36	22	25077080	25077080	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	25077080	25077080	C	T	SNP	SEZ6L	NM_021115	human	genbank	54_36p	1	validated	silent	c.2470	p.L824	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	-	no_errors
CHEK2	11200	genome.wustl.edu	36	22	27422947	27422947	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	27422947	27422947	C	T	SNP	CHEK2	NM_001005735	human	genbank	54_36p	-1	reviewed	missense	c.1166	p.R389H	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ZNRF3	84133	genome.wustl.edu	36	22	27775294	27775294	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	27775294	27775294	C	G	SNP	ZNRF3	NM_032173	human	genbank	54_36p	1	validated	silent	c.825	p.T275	0.99	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RFPL1S	10740	genome.wustl.edu	36	22	28163379	28163379	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	28163379	28163379	G	A	SNP	RFPL1S	NR_002727	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0	-	-	-	no_errors
UQCR10	29796	genome.wustl.edu	36	22	28493396	28493396	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	28493396	28493396	C	T	SNP	UCRC	NM_013387	human	genbank	54_36p	1	validated	silent	c.9	p.A3	0	NULL	"superfamily_Ubiquinol_cytC_Reductase_QCR9,HMMPfam_UCR_UQCRX_QCR9"	-	no_errors
SF3A1	10291	genome.wustl.edu	36	22	29065183	29065183	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	29065183	29065183	C	A	SNP	SF3A1	NM_005877	human	genbank	54_36p	-1	reviewed	missense	c.1433	p.G478V	1	NULL	"superfamily_SSF109905,HMMSmart_SWAP,HMMPfam_Surp,superfamily_SSF54236,HMMPfam_ubiquitin,HMMSmart_UBQ"	-	no_errors
SF3A1	10291	genome.wustl.edu	36	22	29072390	29072390	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	29072390	29072390	T	A	SNP	SF3A1	NM_005877	human	genbank	54_36p	-1	reviewed	nonsense	c.304	p.K102*	1	"HMMSmart_SWAP,superfamily_SSF109905"	"HMMPfam_Surp,HMMSmart_SWAP,HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF109905,superfamily_SSF54236"	-	no_errors
SEC14L3	266629	genome.wustl.edu	36	22	29187550	29187550	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	29187550	29187550	G	C	SNP	SEC14L3	NM_174975	human	genbank	54_36p	-1	reviewed	missense	c.903	p.C301W	1	superfamily_SSF101576	"superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576"	-	no_errors
SEC14L3	266629	genome.wustl.edu	36	22	29188108	29188108	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	29188108	29188108	T	C	SNP	SEC14L3	NM_174975	human	genbank	54_36p	-1	reviewed	missense	c.736	p.T246A	1	"HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C"	"HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N,superfamily_SSF101576"	-	no_errors
LOC730005	730005	genome.wustl.edu	36	22	29251840	29251840	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	29251840	29251840	G	A	SNP	LOC730005	XM_001132040	human	genbank	54_36p	-1	model	silent	c.744	p.P248	0.92	"superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO"	"superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576"	-	no_errors
PATZ1	23598	genome.wustl.edu	36	22	30061753	30061753	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	30061753	30061753	G	A	SNP	PATZ1	NM_014323	human	genbank	54_36p	-1	reviewed	missense	c.1432	p.R478W	1	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_HMGI_Y,HMMPfam_AT_hook,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
EIF4ENIF1	56478	genome.wustl.edu	36	22	30166737	30166737	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	-	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	30166737	30166737	C	-	DEL	EIF4ENIF1	NM_019843	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2669	p.G890fs	1	NULL	HMMPfam_EIF4E-T	"(deletion:cds_exon[30166690,30166854])"	no_errors
DEPDC5	9681	genome.wustl.edu	36	22	30532135	30532159	+	Frame_Shift_Del	DEL	TTGTAATAGTTTCACCCCACGAATA	TTGTAATAGTTTCACCCCACGAATA	-	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	TTGTAATAGTTTCACCCCACGAATA	TTGTAATAGTTTCACCCCACGAATA	TTGTAATAGTTTCACCCCACGAATA	-	TTGTAATAGTTTCACCCCACGAATA	TTGTAATAGTTTCACCCCACGAATA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	30532135	30532159	TTGTAATAGTTTCACCCCACGAATA	-	DEL	DEPDC5	NM_014662	human	genbank	54_36p	1	validated	frame_shift_del	c.1245_1269	p.F415fs	0.945:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.904:1.000:1.000:1.000:1.000:1.000:0.987:1.000:1.000:1.000	NULL	"superfamily_Winged helix DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	"(deletion:cds_exon[30532108,30532177])"	no_errors
DEPDC5	9681	genome.wustl.edu	36	22	30536507	30536507	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	30536507	30536507	C	T	SNP	DEPDC5	NM_014662	human	genbank	54_36p	1	validated	missense	c.1325	p.S442F	1	NULL	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_Winged helix DNA-binding domain"	-	no_errors
DEPDC5	9681	genome.wustl.edu	36	22	30583446	30583446	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	30583446	30583446	G	A	SNP	DEPDC5	NM_014662	human	genbank	54_36p	1	validated	silent	c.3144	p.Q1048	1	NULL	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_Winged helix DNA-binding domain"	-	no_errors
FBXO7	25793	genome.wustl.edu	36	22	31211059	31211059	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	31211059	31211059	C	T	SNP	FBXO7	NM_012179	human	genbank	54_36p	1	reviewed	missense	c.650	p.T217I	0.98	NULL	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX"	-	no_errors
LARGE	9215	genome.wustl.edu	36	22	32042112	32042112	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	32042112	32042112	G	C	SNP	LARGE	NM_004737	human	genbank	54_36p	-1	reviewed	missense	c.1410	p.D470E	1	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	-	no_errors
ISX	91464	genome.wustl.edu	36	22	33811509	33811509	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	33811509	33811509	G	A	SNP	ISX	NM_001008494	human	genbank	54_36p	1	validated	silent	c.561	p.S187	0	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HMOX1	3162	genome.wustl.edu	36	22	34112809	34112809	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	34112809	34112809	C	T	SNP	HMOX1	NM_002133	human	genbank	54_36p	1	reviewed	silent	c.276	p.D92	1	"superfamily_Heme oxygenase-like,HMMPfam_Heme_oxygenase"	"superfamily_Heme oxygenase-like,HMMPfam_Heme_oxygenase,PatternScan_HEME_OXYGENASE"	-	no_errors
MCM5	4174	genome.wustl.edu	36	22	34143848	34143848	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	34143848	34143848	G	T	SNP	MCM5	NM_006739	human	genbank	54_36p	1	reviewed	missense	c.1702	p.V568L	0.99	"HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"superfamily_Nucleic acid-binding proteins,HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_MCM_1"	-	no_errors
IL2RB	3560	genome.wustl.edu	36	22	35854460	35854460	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22	35854460	35854460	G	T	SNP	IL2RB	NM_000878	human	genbank	54_36p	-1	reviewed	missense	c.1278	p.D426E	0.5	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
CYTH4	27128	genome.wustl.edu	36	22	36025279	36025279	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	36025279	36025279	C	T	SNP	CYTH4	NM_013385	human	genbank	54_36p	1	reviewed	silent	c.420	p.L140	1	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7"	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
CARD10	29775	genome.wustl.edu	36	22	36223101	36223101	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	36223101	36223101	G	A	SNP	CARD10	NM_014550	human	genbank	54_36p	-1	reviewed	silent	c.1818	p.S606	0.74	NULL	"superfamily_DEATH_like,HMMPfam_CARD,superfamily_SSF52540"	-	no_errors
PDXP	57026	genome.wustl.edu	36	22	36391593	36391593	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	36391593	36391593	G	C	SNP	PDXP	NM_020315	human	genbank	54_36p	1	validated	missense	c.660	p.E220D	1	"superfamily_SSF56784,HMMPfam_Hydrolase"	"superfamily_SSF56784,HMMPfam_Hydrolase"	-	no_errors
PDXP	57026	genome.wustl.edu	36	22	36391596	36391596	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	36391596	36391596	C	T	SNP	PDXP	NM_020315	human	genbank	54_36p	1	validated	silent	c.663	p.C221	1	"HMMPfam_Hydrolase,superfamily_SSF56784"	"HMMPfam_Hydrolase,superfamily_SSF56784"	-	no_errors
TRIOBP	11078	genome.wustl.edu	36	22	36451629	36451629	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22	36451629	36451629	C	A	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.3120	p.F1040L	1	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
EIF3L	51386	genome.wustl.edu	36	22	36596199	36596199	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	36596199	36596199	C	G	SNP	EIF3L	NM_016091	human	genbank	54_36p	1	validated	missense	c.650	p.S217C	1	HMMPfam_Paf67	HMMPfam_Paf67	-	no_errors
PLA2G6	8398	genome.wustl.edu	36	22	36839528	36839528	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	36839528	36839528	C	T	SNP	PLA2G6	NM_003560	human	genbank	54_36p	-1	reviewed	missense	c.2114	p.C705Y	1	superfamily_FabD/lysophospholipase-like	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin"	-	no_errors
CSNK1E	1454	genome.wustl.edu	36	22	37026724	37026724	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37026724	37026724	G	T	SNP	CSNK1E	NM_001894	human	genbank	54_36p	-1	reviewed	missense	c.516	p.N172K	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ENSG00000100181	0	genome.wustl.edu	36	22	37087469	37087469	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37087469	37087469	G	A	SNP	ENSG00000100181	ENST00000381645	human	ensembl	54_36p	-1	known	silent	c.318	p.V106	0.68	NULL	NULL	-	no_stop_codon
KDELR3	11015	genome.wustl.edu	36	22	37207391	37207391	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37207391	37207391	T	G	SNP	KDELR3	NM_016657	human	genbank	54_36p	1	reviewed	missense	c.580	p.F194V	1	NULL	"HMMPfam_ER_lumen_recept,PatternScan_ER_LUMEN_RECEPTOR_1,PatternScan_ER_LUMEN_RECEPTOR_2"	-	no_errors
KDELR3	11015	genome.wustl.edu	36	22	37207392	37207392	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37207392	37207392	T	A	SNP	KDELR3	NM_016657	human	genbank	54_36p	1	reviewed	missense	c.581	p.F194Y	1	NULL	"HMMPfam_ER_lumen_recept,PatternScan_ER_LUMEN_RECEPTOR_1,PatternScan_ER_LUMEN_RECEPTOR_2"	-	no_errors
DMC1	11144	genome.wustl.edu	36	22	37294187	37294187	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37294187	37294187	C	T	SNP	DMC1	NM_007068	human	genbank	54_36p	-1	reviewed	silent	c.21	p.V7	0.53	NULL	"superfamily_Rad51_N,HMMPfam_HHH,HMMPfam_Rad51,superfamily_SSF52540,HMMSmart_AAA"	-	no_errors
CBY1	25776	genome.wustl.edu	36	22	37394077	37394077	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37394077	37394077	G	A	SNP	CBY1	NM_001002880	human	genbank	54_36p	1	reviewed	silent	c.72	p.L24	0.99	NULL	NULL	-	no_errors
APOBEC3B	9582	genome.wustl.edu	36	22	37717443	37717443	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37717443	37717443	C	T	SNP	APOBEC3B	NM_004900	human	genbank	54_36p	1	reviewed	missense	c.884	p.A295V	0.01	"HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like"	"HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like,PatternScan_CYT_DCMP_DEAMINASES,HMMPfam_APOBEC_C"	-	no_errors
APOBEC3D	140564	genome.wustl.edu	36	22	37757785	37757785	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	22	37757785	37757785	C	T	SNP	APOBEC3D	ENST00000216099	human	ensembl	54_36p	1	known	silent	c.903	p.A301	0.03	"HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like"	"HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine deaminase-like,HMMPfam_APOBEC_C"	-	no_errors
CBX7	23492	genome.wustl.edu	36	22	37859983	37859983	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	37859983	37859983	G	T	SNP	CBX7	NM_175709	human	genbank	54_36p	-1	validated	silent	c.615	p.A205	0.67	NULL	"superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1"	-	no_errors
ENTHD1	150350	genome.wustl.edu	36	22	38613618	38613618	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	38613618	38613618	G	A	SNP	ENTHD1	NM_152512	human	genbank	54_36p	-1	provisional	silent	c.81	p.N27	1	"superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273"	"superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273"	-	no_errors
SGSM3	27352	genome.wustl.edu	36	22	39132123	39132123	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	39132123	39132123	G	A	SNP	SGSM3	NM_015705	human	genbank	54_36p	1	validated	missense	c.910	p.E304K	1	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p"	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_RUN,HMMSmart_SM00593"	-	no_errors
SGSM3	27352	genome.wustl.edu	36	22	39135225	39135225	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	39135225	39135225	G	C	SNP	SGSM3	NM_015705	human	genbank	54_36p	1	validated	missense	c.2014	p.E672Q	1	"HMMPfam_RUN,HMMSmart_SM00593"	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_RUN,HMMSmart_SM00593"	-	no_errors
DNAJB7	150353	genome.wustl.edu	36	22	39587615	39587615	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	39587615	39587615	G	C	SNP	DNAJB7	NM_145174	human	genbank	54_36p	-1	provisional	missense	c.330	p.H110Q	1	superfamily_DnaJ_N	"superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1"	-	no_errors
L3MBTL2	83746	genome.wustl.edu	36	22	39935693	39935693	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	39935693	39935693	G	A	SNP	L3MBTL2	NM_031488	human	genbank	54_36p	1	validated	silent	c.72	p.L24	1	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT"	-	no_errors
L3MBTL2	83746	genome.wustl.edu	36	22	39935707	39935707	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	39935707	39935707	G	A	SNP	L3MBTL2	NM_031488	human	genbank	54_36p	1	validated	missense	c.86	p.G29D	1	NULL	"HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT"	-	no_errors
TEF	7008	genome.wustl.edu	36	22	40113439	40113444	+	In_Frame_Del	DEL	TGGACC	TGGACC	-	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	TGGACC	TGGACC	TGGACC	-	TGGACC	TGGACC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	40113439	40113444	TGGACC	-	DEL	TEF	NM_003216	human	genbank	54_36p	1	reviewed	in_frame_del	c.296_301	p.LD101in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	"HMMSmart_SM00338,HMMPfam_bZIP_2"	"(deletion:cds_exon[40113301,40113618])"	no_errors
TOB2	10766	genome.wustl.edu	36	22	40162846	40162846	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	40162846	40162846	C	G	SNP	TOB2	NM_016272	human	genbank	54_36p	-1	validated	silent	c.450	p.L150	1	NULL	"HMMSmart_btg1,HMMPfam_BTG,PatternScan_BTG_1,PatternScan_BTG_2,HMMPfam_PAM2"	-	no_errors
XRCC6	2547	genome.wustl.edu	36	22	40379603	40379603	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	40379603	40379603	A	C	SNP	XRCC6	NM_001469	human	genbank	54_36p	1	reviewed	missense	c.1254	p.E418D	1	"superfamily_SPOC-like,HMMPfam_Ku,HMMSmart_Ku78"	"superfamily_SSF53300,HMMPfam_Ku_N,superfamily_SPOC-like,HMMPfam_Ku,HMMSmart_Ku78,HMMPfam_Ku_C,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	-	no_errors
WBP2NL	164684	genome.wustl.edu	36	22	40745687	40745687	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	40745687	40745687	C	G	SNP	WBP2NL	NM_152613	human	genbank	54_36p	1	validated	missense	c.247	p.L83V	0.95	NULL	HMMPfam_WWbp	-	no_errors
TCF20	6942	genome.wustl.edu	36	22	40935764	40935764	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	40935764	40935764	G	C	SNP	TCF20	NM_005650	human	genbank	54_36p	-1	reviewed	missense	c.5492	p.T1831S	1	NULL	HMMSmart_SM00249	-	no_errors
TCF20	6942	genome.wustl.edu	36	22	40938076	40938076	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	40938076	40938076	G	C	SNP	TCF20	NM_005650	human	genbank	54_36p	-1	reviewed	silent	c.3180	p.A1060	1	NULL	HMMSmart_SM00249	-	no_errors
MCAT	27349	genome.wustl.edu	36	22	41863110	41863110	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	41863110	41863110	G	T	SNP	MCAT	NM_173467	human	genbank	54_36p	-1	reviewed	missense	c.650	p.S217Y	0.04	"superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase"	"superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,PatternScan_ABC_TRANSPORTER_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase"	-	no_errors
SCUBE1	80274	genome.wustl.edu	36	22	41944370	41944370	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	41944370	41944370	G	A	SNP	SCUBE1	NM_173050	human	genbank	54_36p	-1	validated	nonsense	c.1726	p.Q576*	1	NULL	"PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,HMMPfam_GCC2_GCC3,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB"	-	no_errors
EFCAB6	64800	genome.wustl.edu	36	22	42353774	42353774	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	42353774	42353774	C	T	SNP	EFCAB6	NM_022785	human	genbank	54_36p	-1	validated	missense	c.2351	p.R784H	0.73	superfamily_EF-hand	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_DUF1880"	-	no_errors
KIAA1644	85352	genome.wustl.edu	36	22	43024013	43024013	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	43024013	43024013	C	T	SNP	KIAA1644	NM_001099294	human	genbank	54_36p	-1	predicted	silent	c.153	p.S51	0.89	NULL	NULL	-	no_errors
PHF21B	112885	genome.wustl.edu	36	22	43670621	43670621	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	43670621	43670621	C	T	SNP	PHF21B	NM_138415	human	genbank	54_36p	-1	validated	missense	c.838	p.A280T	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD"	-	no_errors
PHF21B	112885	genome.wustl.edu	36	22	43691122	43691122	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	43691122	43691122	T	G	SNP	PHF21B	NM_138415	human	genbank	54_36p	-1	validated	missense	c.266	p.D89A	1	NULL	"HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD"	-	no_errors
SMC1B	27127	genome.wustl.edu	36	22	44168278	44168278	+	Missense_Mutation	SNP	C	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	A	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	22	44168278	44168278	C	A	SNP	SMC1B	NM_148674	human	genbank	54_36p	-1	validated	missense	c.1445	p.S482I	0.99	"superfamily_SSF52540,HMMPfam_SMC_N,superfamily_SMC_hinge"	"superfamily_SSF52540,HMMPfam_SMC_N,superfamily_SMC_hinge,HMMPfam_SMC_hinge"	-	no_errors
FBLN1	2192	genome.wustl.edu	36	22	44293295	44293295	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	44293295	44293295	G	A	SNP	FBLN1	NM_006486	human	genbank	54_36p	1	reviewed	missense	c.149	p.C50Y	1	"HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1"	"HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL"	-	no_errors
PPARA	5465	genome.wustl.edu	36	22	44973117	44973117	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	44973117	44973117	G	C	SNP	PPARA	NM_001001928	human	genbank	54_36p	1	reviewed	missense	c.173	p.G58A	0.17	NULL	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
PKDREJ	10343	genome.wustl.edu	36	22	45033730	45033730	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	45033730	45033730	T	C	SNP	PKDREJ	NM_006071	human	genbank	54_36p	-1	reviewed	missense	c.4154	p.N1385S	0	NULL	"HMMPfam_REJ,HMMSmart_SM00303,HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
TTC38	55020	genome.wustl.edu	36	22	45056177	45056177	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	45056177	45056177	G	T	SNP	TTC38	NM_017931	human	genbank	54_36p	1	validated	silent	c.633	p.P211	0.21	superfamily_SSF48452	superfamily_SSF48452	-	no_errors
TRMU	55687	genome.wustl.edu	36	22	45121059	45121059	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	45121059	45121059	T	G	SNP	TRMU	NM_018006	human	genbank	54_36p	1	reviewed	silent	c.432	p.V144	0	"superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_tRNA_Me_trans"	"superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_tRNA_Me_trans"	-	no_errors
GRAMD4	23151	genome.wustl.edu	36	22	45401479	45401479	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	45401479	45401479	T	A	SNP	GRAMD4	NM_015124	human	genbank	54_36p	1	validated	missense	c.119	p.V40E	0.26	NULL	"HMMPfam_GRAM,HMMSmart_SM00568"	-	no_errors
ZBED4	9889	genome.wustl.edu	36	22	48665385	48665385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	48665385	48665385	C	A	SNP	ZBED4	NM_014838	human	genbank	54_36p	1	validated	missense	c.2071	p.Q691K	1	NULL	"HMMSmart_SM00614,HMMPfam_zf-BED,HMMPfam_hATC"	-	no_errors
TTLL8	164714	genome.wustl.edu	36	22	48821802	48821802	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	48821802	48821802	T	C	SNP	TTLL8	NM_001080447	human	genbank	54_36p	-1	provisional	missense	c.862	p.I288V	0	HMMPfam_TTL	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
MOV10L1	54456	genome.wustl.edu	36	22	48906086	48906086	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	48906086	48906086	G	T	SNP	MOV10L1	NM_018995	human	genbank	54_36p	1	reviewed	missense	c.1708	p.V570F	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PLXNB2	23654	genome.wustl.edu	36	22	49063643	49063643	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	49063643	49063643	C	A	SNP	PLXNB2	NM_012401	human	genbank	54_36p	-1	validated	missense	c.2779	p.D927Y	0.72	"superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	-	no_errors
CPT1B	1375	genome.wustl.edu	36	22	49358237	49358237	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	49358237	49358237	C	T	SNP	CPT1B	NM_004377	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.D429N	0.81	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf"	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2"	-	no_errors
ENSG00000223116	0	genome.wustl.edu	36	13	22450013	22450013	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	22450013	22450013	C	T	SNP	ENSG00000223116	ENST00000411184	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0	-	-	-	no_errors
SNORD116-2	100033414	genome.wustl.edu	36	15	22850526	22850526	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	22850526	22850526	C	A	SNP	SNORD116-2	NR_003317	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.07	-	-	-	no_errors
SNORD116-20	100033431	genome.wustl.edu	36	15	22883990	22883990	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	22883990	22883990	G	T	SNP	SNORD116-20	NR_003334	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.36	-	-	-	no_errors
LOC100128853	100128853	genome.wustl.edu	36	19	23467522	23467522	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	23467522	23467522	C	A	SNP	LOC100128853	XM_001726893	human	genbank	54_36p	-1	model	missense	c.496	p.A166S	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	pseudogene
LOC100128853	100128853	genome.wustl.edu	36	19	23467859	23467859	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	23467859	23467859	T	A	SNP	LOC100128853	XM_001726893	human	genbank	54_36p	-1	model	missense	c.159	p.K53N	0.13	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	pseudogene
LOC100130746	100130746	genome.wustl.edu	36	5	24206973	24206973	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	24206973	24206973	T	A	SNP	LOC100130746	XR_038810	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100130746	100130746	genome.wustl.edu	36	5	24207131	24207131	+	RNA	SNP	T	T	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	24207131	24207131	T	G	SNP	LOC100130746	XR_038810	human	genbank	54_36p	1	model	rna	NULL	NULL	0.93	-	-	-	pseudogene
LOC100129306	100129306	genome.wustl.edu	36	13	26489838	26489838	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	26489838	26489838	A	G	SNP	LOC100129306	XM_001719801	human	genbank	54_36p	-1	model	silent	c.138	p.C46	1	"HMMPfam_Ribosomal_S10,superfamily_Ribosomal protein S10"	"HMMPfam_Ribosomal_S10,superfamily_Ribosomal protein S10"	-	pseudogene
ENSG00000215548	0	genome.wustl.edu	36	20	28226046	28226046	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	C	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	28226046	28226046	A	C	SNP	ENSG00000215548	ENST00000358464	human	ensembl	54_36p	1	known	missense	c.155	p.Q52P	0.09	NULL	NULL	-	no_stop_codon
LOC100131223	100131223	genome.wustl.edu	36	1	28320341	28320341	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	28320341	28320341	C	A	SNP	LOC100131223	XR_039190	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
OR2J1	442185	genome.wustl.edu	36	6	29177624	29177624	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29177624	29177624	A	T	SNP	OR2J1	ENST00000377171	human	ensembl	54_36p	1	known	missense	c.926	p.E309V	0.01	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PSIMCT-1	100101490	genome.wustl.edu	36	20	29599124	29599124	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	29599124	29599124	G	C	SNP	PSIMCT-1	NR_003677	human	genbank	54_36p	1	validated	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100133224	100133224	genome.wustl.edu	36	22	29882241	29882241	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	22	29882241	29882241	C	T	SNP	LOC100133224	XM_001716151	human	genbank	54_36p	-1	model	missense	c.826	p.V276I	0.99	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
DCBLD2	131566	genome.wustl.edu	36	3	100051033	100051033	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	100051033	100051033	C	A	SNP	DCBLD2	NM_080927	human	genbank	54_36p	-1	validated	missense	c.533	p.R178L	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1"	-	no_errors
FANCD2	2177	genome.wustl.edu	36	3	10081040	10081040	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	10081040	10081040	G	T	SNP	FANCD2	NM_033084	human	genbank	54_36p	1	reviewed	nonsense	c.1948	p.E650*	1	NULL	NULL	-	no_errors
GPR128	84873	genome.wustl.edu	36	3	101851320	101851320	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	101851320	101851320	T	A	SNP	GPR128	NM_032787	human	genbank	54_36p	1	provisional	missense	c.1358	p.V453D	0.3	HMMPfam_7tm_2	"PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2"	-	no_errors
GPR128	84873	genome.wustl.edu	36	3	101856536	101856536	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	101856536	101856536	C	A	SNP	GPR128	NM_032787	human	genbank	54_36p	1	provisional	missense	c.1547	p.T516K	0	HMMPfam_7tm_2	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR128	84873	genome.wustl.edu	36	3	101896480	101896480	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	101896480	101896480	C	T	SNP	GPR128	NM_032787	human	genbank	54_36p	1	provisional	missense	c.2339	p.P780L	0	NULL	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
ABI3BP	25890	genome.wustl.edu	36	3	102049161	102049161	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	102049161	102049161	G	T	SNP	ABI3BP	NM_015429	human	genbank	54_36p	-1	validated	missense	c.1497	p.S499R	0.1	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ABI3BP	25890	genome.wustl.edu	36	3	102087731	102087731	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	102087731	102087731	G	C	SNP	ABI3BP	NM_015429	human	genbank	54_36p	-1	validated	missense	c.609	p.D203E	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	-	no_errors
IRAK2	3656	genome.wustl.edu	36	3	10229964	10229964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3	10229964	10229964	C	T	SNP	IRAK2	NM_001570	human	genbank	54_36p	1	reviewed	missense	c.602	p.A201V	0	superfamily_Kinase_like	"PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_DEATH_like,HMMPfam_Death,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
SENP7	57337	genome.wustl.edu	36	3	102563275	102563275	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	102563275	102563275	T	A	SNP	SENP7	NM_020654	human	genbank	54_36p	-1	validated	nonsense	c.1597	p.K533*	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48"	-	no_errors
RG9MTD1	54931	genome.wustl.edu	36	3	102767100	102767100	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	102767100	102767100	A	G	SNP	RG9MTD1	NM_017819	human	genbank	54_36p	1	provisional	missense	c.785	p.Y262C	1	HMMPfam_tRNA_m1G_MT	HMMPfam_tRNA_m1G_MT	-	no_errors
LOC285359	285359	genome.wustl.edu	36	3	102914651	102914651	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	102914651	102914651	A	G	SNP	LOC285359	NR_002941	human	genbank	54_36p	1	validated	rna	NULL	NULL	1	-	-	-	pseudogene
CEP97	79598	genome.wustl.edu	36	3	102957073	102957073	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	102957073	102957073	C	G	SNP	CEP97	NM_024548	human	genbank	54_36p	1	provisional	missense	c.838	p.L280V	0.61	NULL	"superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMPfam_IQ"	-	no_errors
NFKBIZ	64332	genome.wustl.edu	36	3	103057266	103057266	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	103057266	103057266	G	T	SNP	NFKBIZ	NM_031419	human	genbank	54_36p	1	reviewed	splice_site	c.1655-1	e9-1	1	-	-	-	no_errors
ATP2B2	491	genome.wustl.edu	36	3	10345704	10345704	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3	10345704	10345704	C	A	SNP	ATP2B2	NM_001001331	human	genbank	54_36p	-1	reviewed	nonsense	c.3526	p.E1176*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ZPLD1	131368	genome.wustl.edu	36	3	103670511	103670511	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	103670511	103670511	C	A	SNP	ZPLD1	NM_175056	human	genbank	54_36p	1	provisional	missense	c.823	p.P275T	1	"HMMPfam_Zona_pellucida,HMMSmart_ZP"	"HMMPfam_Zona_pellucida,HMMSmart_ZP"	-	no_errors
ALCAM	214	genome.wustl.edu	36	3	106751664	106751664	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	106751664	106751664	G	C	SNP	ALCAM	NM_001627	human	genbank	54_36p	1	validated	missense	c.1378	p.E460Q	1	"superfamily_Immunoglobulin,HMMSmart_SM00408"	"HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
CBLB	868	genome.wustl.edu	36	3	106880050	106880050	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	106880050	106880050	T	G	SNP	CBLB	NM_170662	human	genbank	54_36p	-1	validated	silent	c.2484	p.A828	1	NULL	"HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_SM00165"	-	no_errors
CBLB	868	genome.wustl.edu	36	3	106921653	106921653	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	106921653	106921653	C	T	SNP	CBLB	NM_170662	human	genbank	54_36p	-1	validated	silent	c.1335	p.P445	0.75	NULL	"HMMPfam_UBA,HMMSmart_SM00184,HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,HMMSmart_SM00165,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_EF-hand,superfamily_SH2 domain,superfamily_RING/U-box"	-	no_errors
SLC6A11	6538	genome.wustl.edu	36	3	10891711	10891711	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	10891711	10891711	G	A	SNP	SLC6A11	NM_014229	human	genbank	54_36p	1	provisional	silent	c.822	p.T274	0.82	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
IFT57	55081	genome.wustl.edu	36	3	109415503	109415503	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	109415503	109415503	C	T	SNP	IFT57	NM_018010	human	genbank	54_36p	-1	validated	missense	c.550	p.E184K	1	HMMPfam_IFT57	HMMPfam_IFT57	-	no_errors
MYH15	22989	genome.wustl.edu	36	3	109612336	109612336	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	109612336	109612336	C	T	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	missense	c.4339	p.V1447I	0.88	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat"	-	no_errors
MYH15	22989	genome.wustl.edu	36	3	109678039	109678039	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	109678039	109678039	A	T	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	silent	c.1188	p.A396	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH15	22989	genome.wustl.edu	36	3	109688056	109688056	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	109688056	109688056	G	C	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	silent	c.939	p.L313	0.97	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MORC1	27136	genome.wustl.edu	36	3	110256413	110256413	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	110256413	110256413	G	A	SNP	MORC1	NM_014429	human	genbank	54_36p	-1	reviewed	silent	c.1182	p.G394	1	NULL	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMPfam_zf-CW"	-	no_errors
DPPA2	151871	genome.wustl.edu	36	3	110509627	110509627	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	110509627	110509627	C	T	SNP	DPPA2	NM_138815	human	genbank	54_36p	-1	provisional	silent	c.600	p.K200	0.01	NULL	HMMSmart_SAP	-	no_errors
PHLDB2	90102	genome.wustl.edu	36	3	113086793	113086793	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	113086793	113086793	A	T	SNP	PHLDB2	NM_145753	human	genbank	54_36p	1	validated	silent	c.1179	p.A393	0.3	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
PHLDB2	90102	genome.wustl.edu	36	3	113155498	113155498	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	113155498	113155498	G	A	SNP	PHLDB2	NM_145753	human	genbank	54_36p	1	validated	missense	c.2675	p.C892Y	1	NULL	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
SLC9A10	285335	genome.wustl.edu	36	3	113471528	113471528	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	113471528	113471528	T	A	SNP	SLC9A10	NM_183061	human	genbank	54_36p	-1	validated	missense	c.700	p.M234L	0.82	HMMPfam_Na_H_Exchanger	"HMMPfam_cNMP_binding,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,superfamily_cAMP-binding domain-like,PatternScan_WD_REPEATS_1,superfamily_Voltage-gated potassium channels"	-	no_errors
ATG3	64422	genome.wustl.edu	36	3	113735828	113735828	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	113735828	113735828	C	A	SNP	ATG3	NM_022488	human	genbank	54_36p	-1	provisional	missense	c.841	p.G281W	1	NULL	"HMMPfam_Autophagy_N,HMMPfam_Autophagy_act_C,HMMPfam_Autophagy_Cterm"	-	no_errors
CCDC80	151887	genome.wustl.edu	36	3	113831719	113831719	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	113831719	113831719	T	G	SNP	CCDC80	NM_199511	human	genbank	54_36p	-1	validated	missense	c.1966	p.K656Q	1	NULL	NULL	-	no_errors
CD200R1L	344807	genome.wustl.edu	36	3	114028930	114028930	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	114028930	114028930	T	C	SNP	CD200R1L	NM_001008784	human	genbank	54_36p	-1	validated	missense	c.404	p.H135R	0	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
SIDT1	54847	genome.wustl.edu	36	3	114769133	114769133	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	114769133	114769133	C	T	SNP	SIDT1	NM_017699	human	genbank	54_36p	1	validated	missense	c.401	p.A134V	0.99	NULL	NULL	-	no_errors
SIDT1	54847	genome.wustl.edu	36	3	114812567	114812567	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	114812567	114812567	C	T	SNP	SIDT1	NM_017699	human	genbank	54_36p	1	validated	silent	c.1743	p.I581	1	NULL	NULL	-	no_errors
ZDHHC23	254887	genome.wustl.edu	36	3	115157899	115157899	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	115157899	115157899	C	G	SNP	ZDHHC23	NM_173570	human	genbank	54_36p	1	validated	nonsense	c.896	p.S299*	1	HMMPfam_zf-DHHC	HMMPfam_zf-DHHC	-	no_errors
KIAA1407	57577	genome.wustl.edu	36	3	115220328	115220328	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	115220328	115220328	C	A	SNP	KIAA1407	NM_020817	human	genbank	54_36p	-1	predicted	silent	c.1050	p.L350	1	NULL	NULL	-	no_errors
KIAA1407	57577	genome.wustl.edu	36	3	115236543	115236543	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	115236543	115236543	T	A	SNP	KIAA1407	NM_020817	human	genbank	54_36p	-1	predicted	missense	c.737	p.E246V	1	NULL	NULL	-	no_errors
DRD3	1814	genome.wustl.edu	36	3	115373432	115373432	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	115373432	115373432	G	T	SNP	DRD3	NM_000796	human	genbank	54_36p	-1	reviewed	missense	c.98	p.A33D	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZBTB20	26137	genome.wustl.edu	36	3	115540682	115540682	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	115540682	115540682	G	T	SNP	ZBTB20	NM_015642	human	genbank	54_36p	-1	provisional	missense	c.1867	p.P623T	0.98	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZBTB20	26137	genome.wustl.edu	36	3	115552108	115552108	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	115552108	115552108	C	A	SNP	ZBTB20	NM_015642	human	genbank	54_36p	-1	provisional	missense	c.1288	p.A430S	1	NULL	"HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
GAP43	2596	genome.wustl.edu	36	3	116922346	116922346	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	116922346	116922346	C	T	SNP	GAP43	NM_002045	human	genbank	54_36p	1	reviewed	missense	c.644	p.T215I	1	HMMPfam_Neuromodulin	"PatternScan_NEUROMODULIN_1,HMMPfam_Neuromodulin_N,HMMSmart_SM00015,HMMPfam_IQ,PatternScan_NEUROMODULIN_2,HMMPfam_Neuromodulin"	-	no_errors
ARHGAP31	57514	genome.wustl.edu	36	3	120615793	120615793	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	120615793	120615793	A	C	SNP	CDGAP	NM_020754	human	genbank	54_36p	1	reviewed	missense	c.2327	p.N776T	0.02	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
TMEM39A	55254	genome.wustl.edu	36	3	120663521	120663521	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	120663521	120663521	T	A	SNP	TMEM39A	NM_018266	human	genbank	54_36p	-1	provisional	missense	c.91	p.N31Y	1	NULL	HMMPfam_Tmp39	-	no_errors
POGLUT1	56983	genome.wustl.edu	36	3	120688369	120688369	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	120688369	120688369	G	C	SNP	KTELC1	NM_152305	human	genbank	54_36p	1	validated	splice_site	c.639-1	e7-1	1	-	-	-	no_errors
C3orf1	51300	genome.wustl.edu	36	3	120702256	120702256	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	120702256	120702256	C	G	SNP	C3orf1	NM_016589	human	genbank	54_36p	1	validated	missense	c.219	p.D73E	0.57	NULL	NULL	-	no_errors
ADPRH	141	genome.wustl.edu	36	3	120788176	120788176	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	120788176	120788176	A	C	SNP	ADPRH	NM_001125	human	genbank	54_36p	1	reviewed	missense	c.653	p.Q218P	0.36	"superfamily_ADP-ribosylglycohydrolase,HMMPfam_ADP_ribosyl_GH"	"superfamily_ADP-ribosylglycohydrolase,HMMPfam_ADP_ribosyl_GH"	-	no_errors
PLA1A	51365	genome.wustl.edu	36	3	120826675	120826675	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	120826675	120826675	G	T	SNP	PLA1A	NM_015900	human	genbank	54_36p	1	validated	missense	c.1027	p.V343L	1	NULL	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,PatternScan_LIPASE_SER"	-	no_errors
SYN2	6854	genome.wustl.edu	36	3	12186352	12186352	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	12186352	12186352	G	T	SNP	SYN2	NM_133625	human	genbank	54_36p	1	reviewed	missense	c.1250	p.C417F	0.97	NULL	"HMMPfam_Synapsin_N,PatternScan_SYNAPSIN_1"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
STXBP5L	9515	genome.wustl.edu	36	3	122456552	122456552	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122456552	122456552	A	G	SNP	STXBP5L	NM_014980	human	genbank	54_36p	1	validated	missense	c.1562	p.Y521C	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMPfam_LLGL"	-	no_errors
STXBP5L	9515	genome.wustl.edu	36	3	122619938	122619938	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122619938	122619938	T	G	SNP	STXBP5L	NM_014980	human	genbank	54_36p	1	validated	missense	c.3363	p.S1121R	0.19	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
POLQ	10721	genome.wustl.edu	36	3	122669059	122669059	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122669059	122669059	G	C	SNP	POLQ	NM_199420	human	genbank	54_36p	-1	validated	missense	c.6964	p.P2322A	1	"superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482"	###############################################################################################################################################################################################################################################################	-	no_errors
POLQ	10721	genome.wustl.edu	36	3	122669852	122669852	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122669852	122669852	G	A	SNP	POLQ	NM_199420	human	genbank	54_36p	-1	validated	missense	c.6835	p.P2279S	0	"HMMPfam_DNA_pol_A,superfamily_DNA/RNA polymerases"	###############################################################################################################################################################################################################################################################	-	no_errors
POLQ	10721	genome.wustl.edu	36	3	122690091	122690091	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122690091	122690091	T	A	SNP	POLQ	NM_199420	human	genbank	54_36p	-1	validated	silent	c.4377	p.I1459	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
POLQ	10721	genome.wustl.edu	36	3	122711226	122711226	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122711226	122711226	G	C	SNP	POLQ	NM_199420	human	genbank	54_36p	-1	validated	missense	c.1831	p.P611A	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
GSTM5P1	2945	genome.wustl.edu	36	3	12274643	12274643	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	12274643	12274643	G	T	SNP	GSTM1L	NR_003112	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.99	-	-	-	pseudogene
FBXO40	51725	genome.wustl.edu	36	3	122824185	122824185	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122824185	122824185	G	T	SNP	FBXO40	NM_016298	human	genbank	54_36p	1	validated	nonsense	c.1219	p.E407*	1	NULL	"superfamily_TRAF domain-like,superfamily_F-box domain,HMMPfam_F-box"	-	no_errors
GOLGB1	2804	genome.wustl.edu	36	3	122892521	122892521	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122892521	122892521	C	T	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.8365	p.A2789T	0	NULL	"superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340"	-	no_errors
GOLGB1	2804	genome.wustl.edu	36	3	122898250	122898250	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	122898250	122898250	T	A	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.3795	p.E1265D	0	NULL	"HMMSmart_SM00340,superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
CASR	846	genome.wustl.edu	36	3	123458629	123458629	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123458629	123458629	G	A	SNP	CASR	NM_000388	human	genbank	54_36p	1	reviewed	missense	c.197	p.R66H	1	superfamily_Periplasmic binding protein-like I	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
CASR	846	genome.wustl.edu	36	3	123477396	123477396	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123477396	123477396	G	C	SNP	CASR	NM_000388	human	genbank	54_36p	1	reviewed	missense	c.1425	p.E475D	1	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I"	-	no_errors
FAM162A	26355	genome.wustl.edu	36	3	123605880	123605880	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123605880	123605880	T	C	SNP	FAM162A	NM_014367	human	genbank	54_36p	1	validated	silent	c.243	p.D81	0.93	HMMPfam_DUF1075	HMMPfam_DUF1075	-	no_errors
WDR5B	54554	genome.wustl.edu	36	3	123616204	123616204	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123616204	123616204	C	G	SNP	WDR5B	NM_019069	human	genbank	54_36p	-1	reviewed	missense	c.862	p.E288Q	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
WDR5B	54554	genome.wustl.edu	36	3	123616346	123616346	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123616346	123616346	G	T	SNP	WDR5B	NM_019069	human	genbank	54_36p	-1	reviewed	missense	c.720	p.S240R	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
WDR5B	54554	genome.wustl.edu	36	3	123616506	123616506	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123616506	123616506	T	C	SNP	WDR5B	NM_019069	human	genbank	54_36p	-1	reviewed	missense	c.560	p.Y187C	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
PARP9	83666	genome.wustl.edu	36	3	123759921	123759921	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123759921	123759921	G	T	SNP	PARP9	NM_031458	human	genbank	54_36p	-1	provisional	silent	c.99	p.I33	0.3	NULL	"superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
DTX3L	151636	genome.wustl.edu	36	3	123770675	123770675	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123770675	123770675	T	A	SNP	DTX3L	NM_138287	human	genbank	54_36p	1	validated	missense	c.1049	p.I350N	0.98	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
DTX3L	151636	genome.wustl.edu	36	3	123770782	123770782	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123770782	123770782	A	C	SNP	DTX3L	NM_138287	human	genbank	54_36p	1	validated	missense	c.1156	p.K386Q	0.3	NULL	"HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
PARP14	54625	genome.wustl.edu	36	3	123919723	123919723	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	123919723	123919723	G	T	SNP	PARP14	NM_017554	human	genbank	54_36p	1	validated	silent	c.4116	p.L1372	0.99	superfamily_Macro domain-like	"superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
SEMA5B	54437	genome.wustl.edu	36	3	124162677	124162677	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	124162677	124162677	C	A	SNP	SEMA5B	NM_001031702	human	genbank	54_36p	-1	validated	missense	c.124	p.G42C	0.1	NULL	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
PPARG	5468	genome.wustl.edu	36	3	12433478	12433478	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	12433478	12433478	T	C	SNP	PPARG	NM_015869	human	genbank	54_36p	1	reviewed	silent	c.1095	p.D365	0.98	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
PDIA5	10954	genome.wustl.edu	36	3	124362860	124362860	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	124362860	124362860	T	A	SNP	PDIA5	NM_006810	human	genbank	54_36p	1	provisional	silent	c.1347	p.I449	0.98	"superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin"	"superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1,PatternScan_ER_TARGET"	-	no_errors
ADCY5	111	genome.wustl.edu	36	3	124491420	124491420	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	124491420	124491420	G	A	SNP	ADCY5	NM_183357	human	genbank	54_36p	-1	validated	silent	c.3399	p.S1133	0.02	"HMMSmart_CYCc,HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase"	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
ADCY5	111	genome.wustl.edu	36	3	124492813	124492813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	124492813	124492813	C	T	SNP	ADCY5	NM_183357	human	genbank	54_36p	-1	validated	missense	c.3164	p.R1055H	1	HMMSmart_CYCc	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
MYLK	4638	genome.wustl.edu	36	3	124831014	124831014	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	124831014	124831014	A	G	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	missense	c.5111	p.M1704T	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
MYLK	4638	genome.wustl.edu	36	3	124909399	124909399	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	124909399	124909399	A	T	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	missense	c.2282	p.L761H	0.04	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
KALRN	8997	genome.wustl.edu	36	3	125470766	125470766	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	125470766	125470766	C	T	SNP	KALRN	NM_001024660	human	genbank	54_36p	1	reviewed	missense	c.937	p.R313W	1	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	-	no_errors
KALRN	8997	genome.wustl.edu	36	3	125895955	125895955	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	125895955	125895955	C	G	SNP	KALRN	NM_001024660	human	genbank	54_36p	1	reviewed	missense	c.7492	p.P2498A	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HEG1	57493	genome.wustl.edu	36	3	126215523	126215523	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	126215523	126215523	G	T	SNP	HEG1	NM_020733	human	genbank	54_36p	-1	validated	silent	c.1590	p.I530	0.12	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
SLC12A8	84561	genome.wustl.edu	36	3	126379494	126379494	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	126379494	126379494	G	T	SNP	SLC12A8	NM_024628	human	genbank	54_36p	-1	validated	silent	c.405	p.A135	1	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC12A8	84561	genome.wustl.edu	36	3	126392010	126392010	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	126392010	126392010	T	G	SNP	SLC12A8	NM_024628	human	genbank	54_36p	-1	validated	missense	c.97	p.M33L	1	NULL	HMMPfam_AA_permease	-	no_errors
SNX4	8723	genome.wustl.edu	36	3	126678292	126678292	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	126678292	126678292	T	A	SNP	SNX4	NM_003794	human	genbank	54_36p	-1	reviewed	splice_site	c.727-2	e8-2	1	-	-	-	no_errors
ZXDC	79364	genome.wustl.edu	36	3	127673755	127673755	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	127673755	127673755	A	G	SNP	ZXDC	NM_025112	human	genbank	54_36p	-1	validated	missense	c.991	p.S331P	1	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
UROC1	131669	genome.wustl.edu	36	3	127703408	127703408	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	127703408	127703408	A	G	SNP	UROC1	ENST00000383579	human	ensembl	54_36p	-1	known	missense	c.1009	p.S337P	0.01	HMMPfam_Urocanase	"superfamily_Urocanase,HMMPfam_Urocanase,PatternScan_UROCANASE"	-	no_start_codon
KRT18P17	344866	genome.wustl.edu	36	3	12804345	12804345	+	RNA	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	12804345	12804345	C	T	SNP	KRT18P17	XR_016516	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.48	-	-	-	pseudogene
RPL32	6161	genome.wustl.edu	36	3	12855849	12855849	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	12855849	12855849	T	A	SNP	RPL32	NM_000994	human	genbank	54_36p	-1	reviewed	nonsense	c.277	p.K93*	1	"superfamily_Ribosomal protein L32e,HMMPfam_Ribosomal_L32e"	"superfamily_Ribosomal protein L32e,HMMPfam_Ribosomal_L32e,PatternScan_RIBOSOMAL_L32E"	-	no_errors
KBTBD12	166348	genome.wustl.edu	36	3	129164900	129164900	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	129164900	129164900	C	T	SNP	KLHDC6	NM_207335	human	genbank	54_36p	1	validated	silent	c.1671	p.C557	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
RPN1	6184	genome.wustl.edu	36	3	129833537	129833538	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	-	-	-	T	-	-	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	129833537	129833538	-	T	INS	RPN1	NM_002950	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.787_786	p.R262fs	0.994:0.921	HMMPfam_Ribophorin_I	HMMPfam_Ribophorin_I	-	no_errors
ACAD9	28976	genome.wustl.edu	36	3	130107783	130107794	+	Splice_Site	DEL	GTGAGTGGCCCC	GTGAGTGGCCCC	-	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	GTGAGTGGCCCC	GTGAGTGGCCCC	GTGAGTGGCCCC	-	GTGAGTGGCCCC	GTGAGTGGCCCC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	130107783	130107794	GTGAGTGGCCCC	-	DEL	ACAD9	NM_014049	human	genbank	54_36p	1	validated	splice_site_del	c.1278+1_1278+1	e12+1	1.000:1.000:0.997:0.997:0.990:0.661:0.074:0.001:0.002:0.006:0.000:0.000	-	-	"(deletion:intron[130107783,130109717])"	no_errors
COPG	22820	genome.wustl.edu	36	3	130453815	130453815	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	130453815	130453815	C	T	SNP	COPG	NM_016128	human	genbank	54_36p	1	validated	missense	c.92	p.A31V	1	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Gamma-COP,superfamily_Subdomain of clathrin and coatomer appendage domain"	-	no_errors
C3orf25	90288	genome.wustl.edu	36	3	130623314	130623314	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	130623314	130623314	G	A	SNP	C3orf25	NM_207307	human	genbank	54_36p	-1	predicted	silent	c.72	p.P24	0	NULL	"PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
PIK3R4	30849	genome.wustl.edu	36	3	131887939	131887939	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	131887939	131887939	T	G	SNP	PIK3R4	NM_014602	human	genbank	54_36p	-1	validated	missense	c.3281	p.E1094A	1	superfamily_WD40_like	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM-type_fold,HMMPfam_HEAT,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ACPP	55	genome.wustl.edu	36	3	133558249	133558269	+	In_Frame_Del	DEL	ATGAGACGCAGCACGAGCCGT	ATGAGACGCAGCACGAGCCGT	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	ATGAGACGCAGCACGAGCCGT	ATGAGACGCAGCACGAGCCGT					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3	133558249	133558269	ATGAGACGCAGCACGAGCCGT	-	DEL	ACPP	NM_001099	human	genbank	54_36p	1	reviewed	in_frame_del	c.998_1018	p.ETQHEPY334in_frame_del	0.994:0.951:0.952:0.942:0.840:0.749:0.683:0.000:0.001:0.000:0.001:0.000:0.001:0.001:0.023:0.021:0.012:0.021:0.016:0.000:0.000	superfamily_Phosphoglycerate mutase-like	"superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,PatternScan_HIS_ACID_PHOSPHAT_2"	"(deletion:cds_exon[133558220,133558412])"	no_errors
ACPP	55	genome.wustl.edu	36	3	133558366	133558366	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	133558366	133558366	G	T	SNP	ACPP	NM_001099	human	genbank	54_36p	1	reviewed	missense	c.1115	p.C372F	0.98	superfamily_Phosphoglycerate mutase-like	"HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,PatternScan_HIS_ACID_PHOSPHAT_2,superfamily_Phosphoglycerate mutase-like"	-	no_errors
TMEM108	66000	genome.wustl.edu	36	3	134582107	134582107	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	134582107	134582107	G	A	SNP	TMEM108	NM_023943	human	genbank	54_36p	1	validated	missense	c.862	p.G288S	0.01	NULL	PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
TMEM108	66000	genome.wustl.edu	36	3	134582534	134582534	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	134582534	134582534	T	A	SNP	TMEM108	NM_023943	human	genbank	54_36p	1	validated	missense	c.1289	p.L430H	1	NULL	PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
TOPBP1	11073	genome.wustl.edu	36	3	134845592	134845592	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	134845592	134845592	C	T	SNP	TOPBP1	NM_007027	human	genbank	54_36p	-1	reviewed	missense	c.1549	p.E517K	1	"HMMPfam_BRCT,HMMSmart_BRCT"	"superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_Secretoglobin"	-	no_errors
C3orf36	80111	genome.wustl.edu	36	3	135130178	135130178	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	135130178	135130178	T	G	SNP	C3orf36	NM_025041	human	genbank	54_36p	-1	validated	silent	c.160	p.R54	0.01	NULL	NULL	-	no_errors
HDAC11	79885	genome.wustl.edu	36	3	13520660	13520660	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	13520660	13520660	A	T	SNP	HDAC11	ENST00000383796	human	ensembl	54_36p	1	known	nonsense	c.673	p.R225*	1	NULL	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	-	no_errors
RYK	6259	genome.wustl.edu	36	3	135390442	135390442	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	135390442	135390442	A	G	SNP	RYK	ENST00000296084	human	ensembl	54_36p	-1	known	missense	c.1034	p.I345T	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	"HMMSmart_SM00469,HMMPfam_WIF,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR"	-	no_start_codon
CEP63	80254	genome.wustl.edu	36	3	135738746	135738746	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	135738746	135738746	A	T	SNP	CEP63	NM_025180	human	genbank	54_36p	1	reviewed	silent	c.501	p.V167	1	NULL	NULL	-	no_errors
KY	339855	genome.wustl.edu	36	3	135805662	135805662	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	135805662	135805662	G	A	SNP	KY	NM_178554	human	genbank	54_36p	-1	validated	missense	c.1435	p.R479C	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_Transglut_core,HMMSmart_SM00460"	-	no_errors
FBLN2	2199	genome.wustl.edu	36	3	13654167	13654167	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	13654167	13654167	C	A	SNP	FBLN2	NM_001004019	human	genbank	54_36p	1	reviewed	nonsense	c.3444	p.C1148*	0.99	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
STAG1	10274	genome.wustl.edu	36	3	137550738	137550738	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	137550738	137550738	C	G	SNP	STAG1	NM_005862	human	genbank	54_36p	-1	reviewed	missense	c.3223	p.V1075L	1	NULL	"superfamily_ARM-type_fold,HMMPfam_STAG"	-	no_errors
CLDN18	51208	genome.wustl.edu	36	3	139225207	139225207	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	139225207	139225207	C	A	SNP	CLDN18	NM_001002026	human	genbank	54_36p	1	validated	silent	c.238	p.R80	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
DZIP1L	199221	genome.wustl.edu	36	3	139305138	139305138	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	139305138	139305138	C	G	SNP	DZIP1L	NM_173543	human	genbank	54_36p	-1	provisional	missense	c.366	p.Q122H	0.79	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MRAS	22808	genome.wustl.edu	36	3	139600060	139600060	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	139600060	139600060	T	G	SNP	MRAS	NM_001085049	human	genbank	54_36p	1	validated	missense	c.407	p.I136S	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
PIK3CB	5291	genome.wustl.edu	36	3	139906020	139906020	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	139906020	139906020	A	C	SNP	PIK3CB	NM_006219	human	genbank	54_36p	-1	provisional	missense	c.1536	p.I512M	1	superfamily_ARM-type_fold	###############################################################################################################################################################################################################################################################	-	no_errors
MRPS22	56945	genome.wustl.edu	36	3	140548472	140548472	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	140548472	140548472	C	G	SNP	MRPS22	NM_020191	human	genbank	54_36p	1	reviewed	missense	c.235	p.L79V	0.99	HMMPfam_MRP-S22	HMMPfam_MRP-S22	-	no_errors
COPB2	9276	genome.wustl.edu	36	3	140559794	140559794	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	140559794	140559794	C	T	SNP	COPB2	NM_004766	human	genbank	54_36p	-1	validated	missense	c.2563	p.G855R	0.9	NULL	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_Amine_DH_B_like,HMMPfam_Coatomer_WDAD"	-	no_errors
TMEM43	79188	genome.wustl.edu	36	3	14158264	14158264	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	14158264	14158264	C	T	SNP	TMEM43	NM_024334	human	genbank	54_36p	1	reviewed	missense	c.1171	p.R391W	0.75	NULL	HMMPfam_DUF1625	-	no_errors
XPC	7508	genome.wustl.edu	36	3	14186991	14186991	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	14186991	14186991	G	T	SNP	XPC	ENST00000285021	human	ensembl	54_36p	-1	known	missense	c.363	p.D121E	0.01	NULL	"HMMPfam_Rad4,HMMPfam_BHD_1,HMMPfam_BHD_2,HMMPfam_BHD_3"	-	no_errors
LSM3	27258	genome.wustl.edu	36	3	14214608	14214608	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	14214608	14214608	G	T	SNP	LSM3	NM_014463	human	genbank	54_36p	1	validated	silent	c.297	p.L99	0.87	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
ZBTB38	253461	genome.wustl.edu	36	3	142645875	142645875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	142645875	142645875	G	A	SNP	ZBTB38	NM_001080412	human	genbank	54_36p	1	validated	missense	c.1955	p.G652D	0	NULL	"HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZBTB38	253461	genome.wustl.edu	36	3	142647243	142647243	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	142647243	142647243	C	A	SNP	ZBTB38	NM_001080412	human	genbank	54_36p	1	validated	missense	c.3323	p.T1108N	1	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
RASA2	5922	genome.wustl.edu	36	3	142713785	142713785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	142713785	142713785	G	A	SNP	RASA2	NM_006506	human	genbank	54_36p	1	reviewed	missense	c.224	p.R75H	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK"	-	no_errors
RASA2	5922	genome.wustl.edu	36	3	142731291	142731291	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	142731291	142731291	C	G	SNP	RASA2	NM_006506	human	genbank	54_36p	1	reviewed	missense	c.407	p.T136S	1	"HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,HMMPfam_BTK,HMMSmart_BTK,HMMPfam_PH,HMMSmart_PH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_C2_CaLB,superfamily_SSF50729"	-	no_errors
ATR	545	genome.wustl.edu	36	3	143663531	143663531	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	143663531	143663531	T	A	SNP	ATR	NM_001184	human	genbank	54_36p	-1	reviewed	missense	c.7133	p.E2378V	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146"	"superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_UME,HMMSmart_SM00802,superfamily_TPR-like,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
ATR	545	genome.wustl.edu	36	3	143686726	143686726	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	143686726	143686726	T	A	SNP	ATR	NM_001184	human	genbank	54_36p	-1	reviewed	missense	c.6167	p.N2056I	1	"HMMPfam_FAT,superfamily_ARM repeat"	"HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_UME,HMMSmart_SM00802,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2,superfamily_TPR-like"	-	no_errors
TRPC1	7220	genome.wustl.edu	36	3	143994491	143994491	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	143994491	143994491	C	T	SNP	TRPC1	NM_003304	human	genbank	54_36p	1	validated	missense	c.1471	p.P491S	1	HMMPfam_Ion_trans	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_TRP_2,HMMPfam_Ion_trans"	-	no_errors
TRPC1	7220	genome.wustl.edu	36	3	144005548	144005548	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	144005548	144005548	C	A	SNP	TRPC1	NM_003304	human	genbank	54_36p	1	validated	missense	c.1695	p.F565L	1	HMMPfam_Ion_trans	"HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2"	-	no_errors
PCOLCE2	26577	genome.wustl.edu	36	3	144044538	144044538	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	144044538	144044538	G	T	SNP	PCOLCE2	NM_013363	human	genbank	54_36p	-1	provisional	missense	c.491	p.S164Y	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,PatternScan_ABC_TRANSPORTER_1,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	-	no_errors
SR140	23350	genome.wustl.edu	36	3	144239734	144239746	+	Splice_Site	DEL	GGGTGAGTAAAAG	GGGTGAGTAAAAG	-	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	GGGTGAGTAAAAG	GGGTGAGTAAAAG	GGGTGAGTAAAAG	-	GGGTGAGTAAAAG	GGGTGAGTAAAAG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	144239734	144239746	GGGTGAGTAAAAG	-	DEL	SR140	NM_001080415	human	genbank	54_36p	1	provisional	splice_site_del	c.2316_2317	p.Q772fs	1.000:1.000	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,superfamily_ENTH/VHS domain,HMMSmart_SM00582"	"(deletion:cds_exon[144239640,144239735], intron[144239736,144240425])"	no_errors
LOC645515	645515	genome.wustl.edu	36	3	144719058	144719058	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	144719058	144719058	C	T	SNP	LOC645515	XR_017588	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC645515	645515	genome.wustl.edu	36	3	144719428	144719428	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	144719428	144719428	C	A	SNP	LOC645515	XR_017588	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SLC6A6	6533	genome.wustl.edu	36	3	14498336	14498336	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	14498336	14498336	G	C	SNP	SLC6A6	NM_003043	human	genbank	54_36p	1	validated	missense	c.1705	p.E569Q	0.66	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLC9A9	285195	genome.wustl.edu	36	3	144998431	144998431	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	144998431	144998431	G	A	SNP	SLC9A9	NM_173653	human	genbank	54_36p	-1	validated	missense	c.383	p.T128I	1	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
C3orf58	205428	genome.wustl.edu	36	3	145187105	145187105	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	145187105	145187105	G	C	SNP	C3orf58	NM_173552	human	genbank	54_36p	1	validated	missense	c.688	p.A230P	1	NULL	NULL	-	no_errors
LOC389156	389156	genome.wustl.edu	36	3	147025134	147025134	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	147025134	147025134	G	A	SNP	LOC389156	XR_017589	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
FGD5	152273	genome.wustl.edu	36	3	14836828	14836828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	14836828	14836828	G	A	SNP	FGD5	NM_152536	human	genbank	54_36p	1	validated	missense	c.523	p.V175M	0	NULL	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
FGD5	152273	genome.wustl.edu	36	3	14935265	14935265	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	14935265	14935265	G	A	SNP	FGD5	NM_152536	human	genbank	54_36p	1	validated	missense	c.2767	p.V923I	1	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_FYVE,HMMSmart_FYVE,HMMPfam_PH,HMMSmart_PH,superfamily_FYVE_PHD_ZnF,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF50729"	-	no_errors
CPB1	1360	genome.wustl.edu	36	3	150041432	150041432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	150041432	150041432	C	T	SNP	CPB1	NM_001871	human	genbank	54_36p	1	reviewed	missense	c.454	p.R152C	0.96	"superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
GYG1	2992	genome.wustl.edu	36	3	150197238	150197238	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	150197238	150197238	A	T	SNP	GYG1	NM_004130	human	genbank	54_36p	1	provisional	missense	c.338	p.D113V	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	-	no_errors
HPS3	84343	genome.wustl.edu	36	3	150360541	150360541	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	150360541	150360541	G	T	SNP	HPS3	NM_032383	human	genbank	54_36p	1	reviewed	missense	c.1891	p.V631F	0.05	NULL	NULL	-	no_errors
HPS3	84343	genome.wustl.edu	36	3	150360617	150360617	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	150360617	150360617	C	T	SNP	HPS3	NM_032383	human	genbank	54_36p	1	reviewed	missense	c.1967	p.P656L	0.58	NULL	NULL	-	no_errors
HPS3	84343	genome.wustl.edu	36	3	150368384	150368384	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	150368384	150368384	A	C	SNP	HPS3	NM_032383	human	genbank	54_36p	1	reviewed	missense	c.2811	p.K937N	1	NULL	NULL	-	no_errors
CP	1356	genome.wustl.edu	36	3	150413013	150413013	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	150413013	150413013	A	G	SNP	CP	NM_000096	human	genbank	54_36p	-1	reviewed	silent	c.309	p.D103	0.04	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3"	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2"	-	no_errors
P2RY13	53829	genome.wustl.edu	36	3	152528599	152528599	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152528599	152528599	A	G	SNP	P2RY13	NM_176894	human	genbank	54_36p	-1	reviewed	missense	c.872	p.M291T	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
P2RY13	53829	genome.wustl.edu	36	3	152528881	152528881	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152528881	152528881	C	A	SNP	P2RY13	NM_176894	human	genbank	54_36p	-1	reviewed	missense	c.590	p.W197L	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
P2RY13	53829	genome.wustl.edu	36	3	152528886	152528886	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152528886	152528886	A	C	SNP	P2RY13	NM_176894	human	genbank	54_36p	-1	reviewed	missense	c.585	p.I195M	0.73	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MED12L	116931	genome.wustl.edu	36	3	152550663	152550663	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152550663	152550663	A	G	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	missense	c.2272	p.K758E	1	NULL	HMMPfam_Med12	-	no_errors
MED12L	116931	genome.wustl.edu	36	3	152560983	152560983	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152560983	152560983	C	T	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	missense	c.2752	p.P918S	1	NULL	HMMPfam_Med12	-	no_errors
MED12L	116931	genome.wustl.edu	36	3	152588413	152588413	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152588413	152588413	C	T	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	silent	c.5109	p.Y1703	0.97	NULL	HMMPfam_Med12	-	no_errors
MED12L	116931	genome.wustl.edu	36	3	152613672	152613672	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152613672	152613672	G	T	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	missense	c.6091	p.V2031L	0.87	NULL	HMMPfam_Med12	-	no_errors
IGSF10	285313	genome.wustl.edu	36	3	152647214	152647214	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	152647214	152647214	G	C	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	missense	c.3245	p.P1082R	0.02	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_I-set,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_ig"	-	no_errors
MBNL1	4154	genome.wustl.edu	36	3	153500755	153500755	+	Nonsense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	153500755	153500755	C	G	SNP	MBNL1	NM_207293	human	genbank	54_36p	1	validated	nonsense	c.83	p.S28*	1	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	"HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger"	-	no_errors
GPR149	344758	genome.wustl.edu	36	3	155538219	155538219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	155538219	155538219	G	A	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.2159	p.A720V	1	NULL	NULL	-	no_errors
GPR149	344758	genome.wustl.edu	36	3	155629157	155629157	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	155629157	155629157	G	T	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	silent	c.942	p.I314	1	NULL	NULL	-	no_errors
GPR149	344758	genome.wustl.edu	36	3	155629297	155629297	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	155629297	155629297	A	C	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.802	p.S268A	0.03	NULL	NULL	-	no_errors
GPR149	344758	genome.wustl.edu	36	3	155629513	155629513	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	155629513	155629513	T	C	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.586	p.I196V	0.01	NULL	NULL	-	no_errors
MME	4311	genome.wustl.edu	36	3	156317412	156317412	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	156317412	156317412	C	G	SNP	MME	NM_000902	human	genbank	54_36p	1	reviewed	silent	c.597	p.V199	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
SLC33A1	9197	genome.wustl.edu	36	3	157042984	157042984	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	157042984	157042984	G	A	SNP	SLC33A1	NM_004733	human	genbank	54_36p	-1	reviewed	silent	c.894	p.Y298	1	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
GMPS	8833	genome.wustl.edu	36	3	157136889	157136889	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	157136889	157136889	C	T	SNP	GMPS	NM_003875	human	genbank	54_36p	1	reviewed	nonsense	c.1876	p.Q626*	1	"HMMPfam_GMP_synt_C,superfamily_GMP synthetase C-terminal dimerisation domain"	"superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase,superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_ExsB,HMMPfam_GMP_synt_C,superfamily_GMP synthetase C-terminal dimerisation domain"	-	no_errors
LOC389168	389168	genome.wustl.edu	36	3	157187939	157187939	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	157187939	157187939	A	T	SNP	LOC389168	XR_017613	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC389168	389168	genome.wustl.edu	36	3	157188591	157188591	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	157188591	157188591	G	A	SNP	LOC389168	XR_017613	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KCNAB1	7881	genome.wustl.edu	36	3	157321283	157321283	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	157321283	157321283	G	T	SNP	KCNAB1	NM_172160	human	genbank	54_36p	1	reviewed	silent	c.189	p.L63	0.98	NULL	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	-	no_errors
KCNAB1	7881	genome.wustl.edu	36	3	157492603	157492603	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	157492603	157492603	G	A	SNP	KCNAB1	NM_172159	human	genbank	54_36p	1	reviewed	missense	c.213	p.M71I	1	superfamily_NAD(P)-linked oxidoreductase	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	-	no_errors
PA2G4P4	647033	genome.wustl.edu	36	3	158010580	158010580	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	158010580	158010580	G	A	SNP	PA2G4P4	NR_003284	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
VEPH1	79674	genome.wustl.edu	36	3	158614419	158614419	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	158614419	158614419	G	A	SNP	VEPH1	NM_024621	human	genbank	54_36p	-1	provisional	missense	c.851	p.P284L	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SHOX2	6474	genome.wustl.edu	36	3	159303336	159303336	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	159303336	159303336	G	A	SNP	SHOX2	NM_006884	human	genbank	54_36p	-1	validated	missense	c.380	p.A127V	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
GFM1	85476	genome.wustl.edu	36	3	159852601	159852601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	159852601	159852601	A	G	SNP	GFM1	NM_024996	human	genbank	54_36p	1	reviewed	missense	c.712	p.I238V	1	"superfamily_SSF52540,HMMPfam_GTP_EFTU"	"superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C"	-	no_errors
GFM1	85476	genome.wustl.edu	36	3	159853880	159853880	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	159853880	159853880	T	C	SNP	GFM1	NM_024996	human	genbank	54_36p	1	reviewed	silent	c.928	p.L310	0.01	"HMMPfam_GTP_EFTU,superfamily_Translat_factor,superfamily_SSF52540"	"HMMPfam_EFG_C,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D2,HMMPfam_EFG_IV,superfamily_Translat_factor,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF52540"	-	no_errors
GALNTL2	117248	genome.wustl.edu	36	3	16192065	16192066	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3	16192065	16192066	-	G	INS	GALNTL2	NM_054110	human	genbank	54_36p	1	validated	frame_shift_ins	c.403_404	p.A137fs	0.888:0.866	NULL	"superfamily_SSF53448,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,HMMPfam_Ricin_B_lectin,HMMSmart_RICIN"	-	no_errors
SI	6476	genome.wustl.edu	36	3	166220206	166220206	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	166220206	166220206	G	T	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.3301	p.Q1101K	1	NULL	"HMMSmart_SM00018,superfamily_Trefoil,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2"	-	no_errors
SI	6476	genome.wustl.edu	36	3	166259699	166259699	+	Missense_Mutation	SNP	T	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	T	T	C	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	3	166259699	166259699	T	C	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.1229	p.Q410R	0.09	"HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SLITRK3	22865	genome.wustl.edu	36	3	166388959	166388959	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	166388959	166388959	G	A	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	missense	c.2354	p.P785L	0.11	NULL	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMSmart_LRRNT,HMMPfam_LRR_1"	-	no_errors
SLITRK3	22865	genome.wustl.edu	36	3	166389085	166389085	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	166389085	166389085	A	T	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	missense	c.2228	p.I743N	1	NULL	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
SLITRK3	22865	genome.wustl.edu	36	3	166391031	166391031	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	166391031	166391031	G	T	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	silent	c.282	p.T94	1	superfamily_SSF52058	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
BCHE	590	genome.wustl.edu	36	3	167030102	167030102	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	167030102	167030102	A	G	SNP	BCHE	NM_000055	human	genbank	54_36p	-1	reviewed	missense	c.1414	p.F472L	1	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,HMMPfam_AChE_tetra"	-	no_errors
BCHE	590	genome.wustl.edu	36	3	167030121	167030121	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	167030121	167030121	C	A	SNP	BCHE	NM_000055	human	genbank	54_36p	-1	reviewed	missense	c.1395	p.M465I	1	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,HMMPfam_AChE_tetra,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_SSF53474"	-	no_errors
ZBBX	79740	genome.wustl.edu	36	3	168498896	168498896	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	168498896	168498896	T	C	SNP	ZBBX	NM_024687	human	genbank	54_36p	-1	validated	silent	c.1770	p.Q590	0.69	NULL	HMMPfam_zf-B_box	-	no_errors
ZBBX	79740	genome.wustl.edu	36	3	168498928	168498934	+	Frame_Shift_Del	DEL	TTTCTTG	TTTCTTG	-	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	TTTCTTG	TTTCTTG	TTTCTTG	-	TTTCTTG	TTTCTTG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	168498928	168498934	TTTCTTG	-	DEL	ZBBX	NM_024687	human	genbank	54_36p	-1	validated	frame_shift_del	c.1738_1732	p.Q578fs	0.998:0.998:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_zf-B_box	"(deletion:cds_exon[168498787,168498940])"	no_errors
SEC62	7095	genome.wustl.edu	36	3	171176123	171176123	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	171176123	171176123	G	C	SNP	SEC62	NM_003262	human	genbank	54_36p	1	reviewed	missense	c.70	p.V24L	1	NULL	HMMPfam_Sec62	-	no_errors
PHC3	80012	genome.wustl.edu	36	3	171329851	171329851	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	171329851	171329851	T	G	SNP	PHC3	NM_024947	human	genbank	54_36p	-1	validated	missense	c.1103	p.Q368P	0.96	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
SLC7A14	57709	genome.wustl.edu	36	3	171727348	171727348	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	171727348	171727348	G	T	SNP	SLC7A14	NM_020949	human	genbank	54_36p	-1	validated	silent	c.72	p.S24	1	NULL	HMMPfam_AA_permease	-	no_errors
SLC2A2	6514	genome.wustl.edu	36	3	172207654	172207654	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	172207654	172207654	C	T	SNP	SLC2A2	NM_000340	human	genbank	54_36p	-1	reviewed	missense	c.589	p.V197I	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
TNIK	23043	genome.wustl.edu	36	3	172302058	172302058	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	172302058	172302058	G	C	SNP	TNIK	NM_015028	human	genbank	54_36p	-1	provisional	missense	c.2465	p.P822R	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
TNIK	23043	genome.wustl.edu	36	3	172340001	172340001	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	172340001	172340001	C	A	SNP	TNIK	NM_015028	human	genbank	54_36p	-1	provisional	missense	c.1371	p.Q457H	1	NULL	"HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
TBC1D5	9779	genome.wustl.edu	36	3	17254817	17254817	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	17254817	17254817	C	G	SNP	TBC1D5	NM_014744	human	genbank	54_36p	-1	validated	missense	c.1430	p.S477T	0.15	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC"	-	no_errors
PLD1	5337	genome.wustl.edu	36	3	172820934	172820934	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	172820934	172820934	T	C	SNP	PLD1	NM_002662	human	genbank	54_36p	-1	validated	silent	c.2664	p.L888	0.86	superfamily_Phospholipase D/nuclease	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155"	-	no_errors
PLD1	5337	genome.wustl.edu	36	3	172887213	172887213	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	172887213	172887213	T	A	SNP	PLD1	NM_002662	human	genbank	54_36p	-1	validated	missense	c.1823	p.H608L	0.4	superfamily_Phospholipase D/nuclease	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PLDc,HMMSmart_SM00155,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_Phospholipase D/nuclease"	-	no_errors
KCNMB2	10242	genome.wustl.edu	36	3	180043309	180043309	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	180043309	180043309	C	G	SNP	KCNMB2	NM_005832	human	genbank	54_36p	1	reviewed	missense	c.598	p.L200V	0.98	HMMPfam_CaKB	"HMMPfam_KcnmB2_inactiv,HMMPfam_CaKB"	-	no_errors
PIK3CA	5290	genome.wustl.edu	36	3	180411038	180411038	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	180411038	180411038	C	T	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	silent	c.1530	p.H510	1	superfamily_ARM-type_fold	###############################################################################################################################################################################################################################################################	-	no_errors
PIK3CA	5290	genome.wustl.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	180418785	180418785	G	A	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	missense	c.1633	p.E545K	1	"HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold"	###############################################################################################################################################################################################################################################################	-	no_errors
PIK3CA	5290	genome.wustl.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	180434779	180434779	A	G	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	missense	c.3140	p.H1047R	1	"HMMSmart_PI3Kc,superfamily_Kinase_like"	###############################################################################################################################################################################################################################################################	-	no_errors
LOC131054	131054	genome.wustl.edu	36	3	181523902	181523902	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	181523902	181523902	G	T	SNP	LOC131054	XR_017452	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC131054	131054	genome.wustl.edu	36	3	181524401	181524401	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	181524401	181524401	G	A	SNP	LOC131054	XR_017452	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CCDC39	339829	genome.wustl.edu	36	3	181860218	181860218	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	181860218	181860218	C	A	SNP	CCDC39	NM_181426	human	genbank	54_36p	-1	validated	nonsense	c.550	p.E184*	1	NULL	superfamily_Prefoldin	-	no_errors
ATP11B	23200	genome.wustl.edu	36	3	184066902	184066902	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	184066902	184066902	G	T	SNP	ATP11B	NM_014616	human	genbank	54_36p	1	validated	missense	c.1596	p.K532N	1	"superfamily_SSF56784,HMMPfam_Hydrolase,superfamily_SSF81660"	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660"	-	no_errors
SATB1	6304	genome.wustl.edu	36	3	18411363	18411363	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	18411363	18411363	G	C	SNP	SATB1	NM_002971	human	genbank	54_36p	-1	validated	silent	c.801	p.V267	1	NULL	"HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox"	-	no_errors
LAMP3	27074	genome.wustl.edu	36	3	184352986	184352986	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	184352986	184352986	C	G	SNP	LAMP3	NM_014398	human	genbank	54_36p	-1	validated	splice_site	c.760-1	e3-1	0.55	-	-	-	no_errors
MCF2L2	23101	genome.wustl.edu	36	3	184416547	184416556	+	Frame_Shift_Del	DEL	TGCTGAATCT	TGCTGAATCT	-	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	TGCTGAATCT	TGCTGAATCT	TGCTGAATCT	-	TGCTGAATCT	TGCTGAATCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	184416547	184416556	TGCTGAATCT	-	DEL	MCF2L2	NM_015078	human	genbank	54_36p	-1	validated	frame_shift_del	c.2400_2391	p.K797fs	0.195:0.202:0.201:0.226:0.283:0.282:0.286:0.324:0.404:0.438	"superfamily_DBL homology domain (DH-domain),HMMSmart_SM00325"	"HMMSmart_SM00516,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"(deletion:cds_exon[184416451,184416576])"	no_errors
KLHL6	89857	genome.wustl.edu	36	3	184692984	184692984	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	184692984	184692984	T	C	SNP	KLHL6	NM_130446	human	genbank	54_36p	-1	validated	missense	c.1556	p.Y519C	1	"superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
KLHL24	54800	genome.wustl.edu	36	3	184851541	184851541	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	184851541	184851541	C	T	SNP	KLHL24	NM_017644	human	genbank	54_36p	1	validated	missense	c.703	p.R235C	1	HMMPfam_BACK	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
YEATS2	55689	genome.wustl.edu	36	3	184976435	184976435	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	184976435	184976435	G	A	SNP	YEATS2	NM_018023	human	genbank	54_36p	1	provisional	missense	c.2407	p.A803T	0	NULL	HMMPfam_YEATS	-	no_errors
ABCC5	10057	genome.wustl.edu	36	3	185121875	185121875	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185121875	185121875	C	T	SNP	ABCC5	NM_005688	human	genbank	54_36p	-1	reviewed	silent	c.4221	p.E1407	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
EIF2B5	8893	genome.wustl.edu	36	3	185340583	185340583	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185340583	185340583	A	G	SNP	EIF2B5	NM_003907	human	genbank	54_36p	1	validated	missense	c.787	p.N263D	1	superfamily_SSF53448	"superfamily_SSF53448,superfamily_Trimer_LpxA_like,HMMPfam_Hexapep,superfamily_ARM-type_fold,HMMSmart_eIF5C,HMMPfam_W2"	-	no_errors
EIF2B5	8893	genome.wustl.edu	36	3	185343261	185343261	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185343261	185343261	G	A	SNP	EIF2B5	NM_003907	human	genbank	54_36p	1	validated	missense	c.1547	p.G516E	1	NULL	"HMMPfam_Hexapep,HMMPfam_W2,HMMSmart_eIF5C,superfamily_Trimer_LpxA_like,superfamily_ARM-type_fold,superfamily_SSF53448"	-	no_errors
ABCF3	55324	genome.wustl.edu	36	3	185388622	185388622	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185388622	185388622	G	T	SNP	ABCF3	NM_018358	human	genbank	54_36p	1	validated	splice_site	c.570-1	e7-1	1	-	-	-	no_errors
ECE2	9718	genome.wustl.edu	36	3	185458193	185458193	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185458193	185458193	C	T	SNP	ECE2	NM_014693	human	genbank	54_36p	1	validated	silent	c.435	p.T145	0.27	NULL	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
ECE2	9718	genome.wustl.edu	36	3	185491067	185491067	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185491067	185491067	G	A	SNP	ECE2	NM_014693	human	genbank	54_36p	1	validated	missense	c.2038	p.A680T	1	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M13_N,HMMPfam_Methyltransf_11,HMMPfam_Peptidase_M13,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
EIF4G1	1981	genome.wustl.edu	36	3	185525419	185525419	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185525419	185525419	G	T	SNP	EIF4G1	NM_182917	human	genbank	54_36p	1	reviewed	silent	c.2679	p.R893	1	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543"	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,HMMSmart_SM00515,HMMPfam_W2"	-	no_errors
LOC131185	131185	genome.wustl.edu	36	3	18555915	18555915	+	RNA	SNP	G	T	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	18555915	18555915	G	T	SNP	LOC131185	XR_016694	human	genbank	54_36p	1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
THPO	7066	genome.wustl.edu	36	3	185573473	185573473	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	185573473	185573473	A	G	SNP	THPO	NM_000460	human	genbank	54_36p	-1	reviewed	missense	c.584	p.L195P	0.95	NULL	"HMMPfam_EPO_TPO,PatternScan_EPO_TPO,superfamily_4-helical cytokines"	-	no_errors
EHHADH	1962	genome.wustl.edu	36	3	186392720	186392720	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	186392720	186392720	G	C	SNP	EHHADH	NM_001966	human	genbank	54_36p	-1	validated	missense	c.2160	p.S720R	0.94	NULL	"superfamily_SSF52096,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE,superfamily_NAD(P)-bd,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6DGDH_C_like,HMMPfam_3HCDH"	-	no_errors
LOC647276	647276	genome.wustl.edu	36	3	186619286	186619286	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	186619286	186619286	C	T	SNP	LOC647276	XR_017675	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.28	-	-	-	pseudogene
MAP3K13	9175	genome.wustl.edu	36	3	186648368	186648368	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	186648368	186648368	G	T	SNP	MAP3K13	NM_004721	human	genbank	54_36p	1	reviewed	missense	c.949	p.V317F	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MAP3K13	9175	genome.wustl.edu	36	3	186667364	186667364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	186667364	186667364	G	A	SNP	MAP3K13	NM_004721	human	genbank	54_36p	1	reviewed	missense	c.1562	p.R521H	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	-	no_errors
TRA2B	6434	genome.wustl.edu	36	3	187126095	187126095	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	187126095	187126095	T	C	SNP	TRA2B	NM_004593	human	genbank	54_36p	-1	validated	missense	c.184	p.R62G	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ETV5	2119	genome.wustl.edu	36	3	187305791	187305791	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	187305791	187305791	T	G	SNP	ETV5	NM_004454	human	genbank	54_36p	-1	validated	missense	c.229	p.N77H	1	HMMPfam_ETS_PEA3_N	"HMMPfam_ETS_PEA3_N,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
ADIPOQ	9370	genome.wustl.edu	36	3	188054895	188054895	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	188054895	188054895	G	T	SNP	ADIPOQ	NM_004797	human	genbank	54_36p	1	reviewed	missense	c.443	p.G148V	1	"HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q"	"HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q"	-	no_errors
MASP1	5648	genome.wustl.edu	36	3	188436440	188436440	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	188436440	188436440	G	A	SNP	MASP1	NM_139125	human	genbank	54_36p	-1	reviewed	missense	c.1913	p.S638L	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	###############################################################################################################################################################################################################################################################	-	no_errors
MASP1	5648	genome.wustl.edu	36	3	188436814	188436814	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	188436814	188436814	C	T	SNP	MASP1	NM_139125	human	genbank	54_36p	-1	reviewed	silent	c.1539	p.K513	1	"HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys"	###############################################################################################################################################################################################################################################################	-	no_errors
KCNH8	131096	genome.wustl.edu	36	3	19297777	19297777	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	19297777	19297777	G	T	SNP	KCNH8	NM_144633	human	genbank	54_36p	1	reviewed	missense	c.394	p.D132Y	1	"superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC"	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding"	-	no_errors
CPN2	1370	genome.wustl.edu	36	3	195543725	195543725	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	195543725	195543725	A	T	SNP	CPN2	NM_001080513	human	genbank	54_36p	-1	validated	missense	c.1402	p.W468R	0.38	NULL	"HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52047,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT"	-	no_errors
CPN2	1370	genome.wustl.edu	36	3	195544164	195544164	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	195544164	195544164	T	C	SNP	CPN2	NM_001080513	human	genbank	54_36p	-1	validated	silent	c.963	p.S321	0.23	"HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047"	"HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047"	-	no_errors
LRRC15	131578	genome.wustl.edu	36	3	195562775	195562775	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	195562775	195562775	C	T	SNP	LRRC15	NM_130830	human	genbank	54_36p	-1	validated	missense	c.293	p.R98Q	0.91	superfamily_SSF52058	"superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT"	-	no_errors
ATP13A3	79572	genome.wustl.edu	36	3	195633836	195633836	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	195633836	195633836	C	A	SNP	ATP13A3	NM_024524	human	genbank	54_36p	-1	validated	missense	c.2320	p.A774S	1	"superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase"	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ACAP2	23527	genome.wustl.edu	36	3	196494311	196494311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	196494311	196494311	G	A	SNP	ACAP2	NM_012287	human	genbank	54_36p	-1	validated	missense	c.1925	p.A642V	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
LOC100131360	100131360	genome.wustl.edu	36	3	197209357	197209357	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197209357	197209357	T	A	SNP	LOC100131360	XR_037733	human	genbank	54_36p	1	model	rna	NULL	NULL	0.96	-	-	-	pseudogene
TFRC	7037	genome.wustl.edu	36	3	197283391	197283391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197283391	197283391	C	T	SNP	TFRC	NM_003234	human	genbank	54_36p	-1	validated	missense	c.464	p.R155H	1	superfamily_Zn-dependent exopeptidases	"superfamily_Zn-dependent exopeptidases,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer"	-	no_errors
ZDHHC19	131540	genome.wustl.edu	36	3	197422475	197422475	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197422475	197422475	G	A	SNP	ZDHHC19	NM_001039617	human	genbank	54_36p	-1	validated	silent	c.109	p.L37	0.17	NULL	HMMPfam_zf-DHHC	-	no_errors
ZDHHC19	131540	genome.wustl.edu	36	3	197422537	197422537	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197422537	197422537	G	A	SNP	ZDHHC19	NM_001039617	human	genbank	54_36p	-1	validated	missense	c.47	p.P16L	0	NULL	HMMPfam_zf-DHHC	-	no_errors
OSTalpha	200931	genome.wustl.edu	36	3	197443710	197443710	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197443710	197443710	A	C	SNP	OSTalpha	NM_152672	human	genbank	54_36p	1	validated	silent	c.804	p.L268	1	NULL	NULL	-	no_errors
TCTEX1D2	255758	genome.wustl.edu	36	3	197502604	197502604	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197502604	197502604	G	C	SNP	TCTEX1D2	NM_152773	human	genbank	54_36p	-1	provisional	missense	c.420	p.F140L	1	HMMPfam_Tctex-1	HMMPfam_Tctex-1	-	no_errors
UBXN7	26043	genome.wustl.edu	36	3	197579394	197579394	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197579394	197579394	C	A	SNP	UBXN7	NM_015562	human	genbank	54_36p	-1	validated	missense	c.736	p.D246Y	1	HMMSmart_SM00594	"superfamily_UBA-like,HMMSmart_SM00594,HMMSmart_SM00166,HMMPfam_UBX,superfamily_Ubiquitin-like"	-	no_errors
LOC642892	642892	genome.wustl.edu	36	3	197747883	197747883	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197747883	197747883	C	T	SNP	LOC642892	XM_001718231	human	genbank	54_36p	1	model	silent	c.84	p.H28	1	HMMPfam_Ribosomal_S14	HMMPfam_Ribosomal_S14	-	pseudogene
LRRC33	375387	genome.wustl.edu	36	3	197871893	197871893	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197871893	197871893	G	A	SNP	LRRC33	NM_198565	human	genbank	54_36p	1	provisional	missense	c.982	p.A328T	0.99	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
PAK2	5062	genome.wustl.edu	36	3	197993936	197993936	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	197993936	197993936	G	A	SNP	PAK2	NM_002577	human	genbank	54_36p	1	reviewed	missense	c.22	p.E8K	1	NULL	"HMMPfam_PBD,HMMSmart_PBD,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
LRCH3	84859	genome.wustl.edu	36	3	199043532	199043532	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	199043532	199043532	G	C	SNP	LRCH3	NM_032773	human	genbank	54_36p	1	provisional	missense	c.1049	p.R350T	1	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,superfamily_Calponin-homology"	-	no_errors
EFHB	151651	genome.wustl.edu	36	3	19950031	19950031	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	19950031	19950031	C	T	SNP	EFHB	NM_144715	human	genbank	54_36p	-1	validated	missense	c.484	p.A162T	0.02	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
RPL15	6138	genome.wustl.edu	36	3	23935904	23935904	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	23935904	23935904	G	T	SNP	RPL15	NM_002948	human	genbank	54_36p	1	reviewed	nonsense	c.523	p.G175*	1	"superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L15e"	"superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L15e,PatternScan_RIBOSOMAL_L15E"	-	no_errors
OXSM	54995	genome.wustl.edu	36	3	25808487	25808487	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	25808487	25808487	C	G	SNP	OXSM	NM_017897	human	genbank	54_36p	1	reviewed	silent	c.972	p.A324	0.76	"superfamily_Thiolase-like,HMMPfam_Ketoacyl-synt_C"	"superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C"	-	no_errors
NEK10	152110	genome.wustl.edu	36	3	27179022	27179022	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	27179022	27179022	C	G	SNP	NEK10	ENST00000396636	human	ensembl	54_36p	-1	known	missense	c.1135	p.E379Q	0.98	NULL	"HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
NEK10	152110	genome.wustl.edu	36	3	27191211	27191211	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	27191211	27191211	C	A	SNP	NEK10	ENST00000396636	human	ensembl	54_36p	-1	known	missense	c.814	p.D272Y	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	-	no_errors
NEK10	152110	genome.wustl.edu	36	3	27307153	27307153	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	27307153	27307153	C	T	SNP	NEK10	ENST00000341435	human	ensembl	54_36p	-1	known	missense	c.1702	p.V568I	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_ARM repeat,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
LOC643634	643634	genome.wustl.edu	36	3	27649864	27649864	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	27649864	27649864	G	A	SNP	LOC643634	XR_016808	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
EOMES	8320	genome.wustl.edu	36	3	27733789	27733789	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	27733789	27733789	C	A	SNP	EOMES	NM_005442	human	genbank	54_36p	-1	reviewed	nonsense	c.1837	p.E613*	1	NULL	"HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
EOMES	8320	genome.wustl.edu	36	3	27735905	27735905	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	27735905	27735905	C	T	SNP	EOMES	NM_005442	human	genbank	54_36p	-1	reviewed	missense	c.1108	p.G370R	1	"HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd"	"HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1"	-	no_errors
AZI2	64343	genome.wustl.edu	36	3	28355111	28355111	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	28355111	28355111	C	G	SNP	AZI2	NM_022461	human	genbank	54_36p	-1	validated	splice_site	c.217-1	e2-1	1	-	-	-	no_errors
CNTN4	152330	genome.wustl.edu	36	3	3005054	3005054	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	3005054	3005054	C	T	SNP	CNTN4	NM_175607	human	genbank	54_36p	1	reviewed	missense	c.1384	p.L462F	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
CNTN4	152330	genome.wustl.edu	36	3	3053974	3053974	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	3053974	3053974	C	A	SNP	CNTN4	NM_175607	human	genbank	54_36p	1	reviewed	missense	c.2054	p.P685H	1	"HMMPfam_fn3,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
TGFBR2	7048	genome.wustl.edu	36	3	30704885	30704885	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	30704885	30704885	A	C	SNP	TGFBR2	NM_001024847	human	genbank	54_36p	1	reviewed	missense	c.1477	p.K493Q	1	"HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	"HMMPfam_ecTbetaR2,superfamily_Snake toxin-like,HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CRBN	51185	genome.wustl.edu	36	3	3190765	3190765	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	3190765	3190765	T	C	SNP	CRBN	NM_016302	human	genbank	54_36p	-1	validated	missense	c.355	p.T119A	1	"HMMPfam_LON,HMMSmart_SM00464"	"HMMPfam_LON,HMMSmart_SM00464"	-	no_errors
ZNF860	344787	genome.wustl.edu	36	3	32005808	32005808	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	32005808	32005808	C	T	SNP	ZNF860	ENST00000360311	human	ensembl	54_36p	1	known	missense	c.185	p.A62V	0.02	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_stop_codon
CLASP2	23122	genome.wustl.edu	36	3	33518188	33518188	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	33518188	33518188	T	A	SNP	CLASP2	NM_015097	human	genbank	54_36p	-1	validated	missense	c.4394	p.D1465V	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
CLASP2	23122	genome.wustl.edu	36	3	33589669	33589669	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	33589669	33589669	C	A	SNP	CLASP2	NM_015097	human	genbank	54_36p	-1	validated	missense	c.2636	p.W879L	1	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
CLASP2	23122	genome.wustl.edu	36	3	33661311	33661311	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	33661311	33661311	G	A	SNP	CLASP2	NM_015097	human	genbank	54_36p	-1	validated	silent	c.804	p.S268	1	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
PDCD6IP	10015	genome.wustl.edu	36	3	33869100	33869100	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	33869100	33869100	A	T	SNP	PDCD6IP	NM_013374	human	genbank	54_36p	1	reviewed	silent	c.1758	p.T586	1	NULL	HMMPfam_BRO1	-	no_errors
ARPP21	10777	genome.wustl.edu	36	3	35745918	35745918	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	35745918	35745918	C	T	SNP	ARPP-21	NM_016300	human	genbank	54_36p	1	validated	missense	c.1345	p.P449S	0.83	NULL	"HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H"	-	no_errors
DCLK3	85443	genome.wustl.edu	36	3	36731996	36731996	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	36731996	36731996	G	A	SNP	DCLK3	NM_033403	human	genbank	54_36p	-1	validated	missense	c.1774	p.R592W	0.34	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TRANK1	9881	genome.wustl.edu	36	3	36872216	36872216	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	36872216	36872216	A	G	SNP	LBA1	NM_014831	human	genbank	54_36p	-1	validated	missense	c.2219	p.M740T	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MLH1	4292	genome.wustl.edu	36	3	37028328	37028328	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	37028328	37028328	A	T	SNP	MLH1	NM_000249	human	genbank	54_36p	1	reviewed	missense	c.559	p.N187Y	1	superfamily_ATP_bd_ATPase	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_mis_repair"	-	no_errors
LRRFIP2	9209	genome.wustl.edu	36	3	37100239	37100239	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	37100239	37100239	G	A	SNP	LRRFIP2	NM_006309	human	genbank	54_36p	-1	validated	silent	c.1170	p.D390	1	HMMPfam_DUF2051	HMMPfam_DUF2051	-	no_errors
GOLGA4	2803	genome.wustl.edu	36	3	37342022	37342022	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	37342022	37342022	C	G	SNP	GOLGA4	NM_002078	human	genbank	54_36p	1	reviewed	missense	c.3641	p.A1214G	0.09	NULL	"superfamily_Prefoldin,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_GRIP,HMMSmart_SM00755,superfamily_GRIP domain"	-	no_errors
ACAA1	30	genome.wustl.edu	36	3	38150461	38150461	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	38150461	38150461	G	A	SNP	ACAA1	NM_001607	human	genbank	54_36p	-1	reviewed	silent	c.309	p.I103	0.83	"HMMPfam_Thiolase_N,superfamily_Thiolase-like"	"HMMPfam_Thiolase_N,superfamily_Thiolase-like,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3"	-	no_errors
XYLB	9942	genome.wustl.edu	36	3	38382188	38382188	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	38382188	38382188	G	T	SNP	XYLB	NM_005108	human	genbank	54_36p	1	reviewed	missense	c.464	p.G155V	1	"superfamily_SSF53067,HMMPfam_FGGY_N"	"superfamily_SSF53067,HMMPfam_FGGY_N,HMMPfam_FGGY_C"	-	no_errors
SCN5A	6331	genome.wustl.edu	36	3	38602210	38602210	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	38602210	38602210	A	G	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	silent	c.2763	p.L921	0.99	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ"	-	no_errors
SCN10A	6336	genome.wustl.edu	36	3	38714850	38714850	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	38714850	38714850	G	A	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	missense	c.4865	p.S1622F	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc"	-	no_errors
SCN10A	6336	genome.wustl.edu	36	3	38730565	38730565	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	38730565	38730565	A	G	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	missense	c.3692	p.I1231T	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324"	-	no_errors
SCN10A	6336	genome.wustl.edu	36	3	38768977	38768977	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	38768977	38768977	G	A	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	missense	c.1492	p.R498W	0.88	NULL	"HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324"	-	no_errors
WDR48	57599	genome.wustl.edu	36	3	39068559	39068559	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	39068559	39068559	G	A	SNP	WDR48	NM_020839	human	genbank	54_36p	1	provisional	silent	c.39	p.R13	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
GORASP1	64689	genome.wustl.edu	36	3	39119205	39119205	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	39119205	39119205	G	A	SNP	GORASP1	NM_031899	human	genbank	54_36p	-1	reviewed	missense	c.316	p.R106C	0.96	"HMMPfam_GRASP55_65,superfamily_PDZ domain-like"	"superfamily_PDZ domain-like,HMMPfam_GRASP55_65"	-	no_errors
CSRNP1	64651	genome.wustl.edu	36	3	39160740	39160740	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	39160740	39160740	C	T	SNP	AXUD1	NM_033027	human	genbank	54_36p	-1	reviewed	silent	c.672	p.K224	1	NULL	NULL	-	no_errors
XIRP1	165904	genome.wustl.edu	36	3	39202075	39202075	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	39202075	39202075	T	A	SNP	XIRP1	NM_194293	human	genbank	54_36p	-1	provisional	missense	c.3866	p.D1289V	0.02	NULL	HMMPfam_Xin	-	no_errors
XIRP1	165904	genome.wustl.edu	36	3	39204307	39204307	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	39204307	39204307	C	G	SNP	XIRP1	NM_194293	human	genbank	54_36p	-1	provisional	missense	c.1634	p.G545A	0.98	HMMPfam_Xin	HMMPfam_Xin	-	no_errors
CCR8	1237	genome.wustl.edu	36	3	39349522	39349522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	39349522	39349522	C	G	SNP	CCR8	NM_005201	human	genbank	54_36p	1	reviewed	missense	c.696	p.N232K	0.96	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZNF619	285267	genome.wustl.edu	36	3	40503387	40503387	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	40503387	40503387	G	A	SNP	ZNF619	NM_173656	human	genbank	54_36p	1	validated	missense	c.334	p.G112R	0	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CTNNB1	1499	genome.wustl.edu	36	3	41241891	41241891	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	41241891	41241891	C	T	SNP	CTNNB1	NM_001098209	human	genbank	54_36p	1	validated	silent	c.558	p.H186	0.99	"superfamily_ARM repeat,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm"	-	no_errors
CHL1	10752	genome.wustl.edu	36	3	418318	418318	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	418318	418318	A	T	SNP	CHL1	NM_006614	human	genbank	54_36p	1	reviewed	missense	c.3395	p.K1132M	1	NULL	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
TRAK1	22906	genome.wustl.edu	36	3	42210387	42210387	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	42210387	42210387	C	G	SNP	TRAK1	NM_001042646	human	genbank	54_36p	1	validated	missense	c.968	p.T323R	1	HMMPfam_HAP1_N	"HMMPfam_HAP1_N,PatternScan_HEMOPEXIN"	-	no_errors
NKTR	4820	genome.wustl.edu	36	3	42653489	42653489	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	42653489	42653489	G	A	SNP	NKTR	NM_005385	human	genbank	54_36p	1	reviewed	missense	c.1289	p.R430H	1	NULL	"superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
HHATL	57467	genome.wustl.edu	36	3	42709260	42709260	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	42709260	42709260	T	C	SNP	HHATL	NM_020707	human	genbank	54_36p	-1	provisional	missense	c.1502	p.E501G	1	NULL	HMMPfam_MBOAT	-	no_errors
LOC285346	285346	genome.wustl.edu	36	3	44516194	44516194	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	44516194	44516194	C	T	SNP	LOC285346	XM_001717544	human	genbank	54_36p	-1	model	missense	c.1082	p.C361Y	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF167	55888	genome.wustl.edu	36	3	44586786	44586786	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	44586786	44586786	C	T	SNP	ZNF167	NM_018651	human	genbank	54_36p	1	validated	missense	c.1180	p.R394W	0.39	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF167	55888	genome.wustl.edu	36	3	44587521	44587521	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	44587521	44587521	G	T	SNP	ZNF167	NM_018651	human	genbank	54_36p	1	validated	nonsense	c.1915	p.E639*	0.77	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF197	10168	genome.wustl.edu	36	3	44645733	44645733	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	44645733	44645733	C	A	SNP	ZNF197	NM_006991	human	genbank	54_36p	1	reviewed	missense	c.83	p.T28N	0.04	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF197	10168	genome.wustl.edu	36	3	44659351	44659351	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	44659351	44659351	C	A	SNP	ZNF197	NM_006991	human	genbank	54_36p	1	reviewed	missense	c.1725	p.F575L	0.91	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF197	10168	genome.wustl.edu	36	3	44659624	44659624	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	44659624	44659624	T	G	SNP	ZNF197	NM_006991	human	genbank	54_36p	1	reviewed	missense	c.1998	p.I666M	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
KIF15	56992	genome.wustl.edu	36	3	44842876	44842876	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	44842876	44842876	G	C	SNP	KIF15	NM_020242	human	genbank	54_36p	1	validated	missense	c.2706	p.L902F	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	-	no_errors
CDCP1	64866	genome.wustl.edu	36	3	45102499	45102499	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	45102499	45102499	G	C	SNP	CDCP1	NM_022842	human	genbank	54_36p	-1	reviewed	missense	c.2146	p.P716A	0.98	NULL	superfamily_Spermadhesin CUB domain	-	no_errors
LARS2	23395	genome.wustl.edu	36	3	45493047	45493047	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	45493047	45493047	C	T	SNP	LARS2	NM_015340	human	genbank	54_36p	1	reviewed	silent	c.942	p.I314	1	"superfamily_SSF52374,superfamily_ValRS_IleRS_edit"	"superfamily_SSF52374,HMMPfam_tRNA-synt_1g,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS_IleRS_edit,HMMPfam_tRNA-synt_1,superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1"	-	no_errors
CCR9	10803	genome.wustl.edu	36	3	45918252	45918252	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	45918252	45918252	G	T	SNP	CCR9	NM_031200	human	genbank	54_36p	1	reviewed	missense	c.968	p.R323I	0.93	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
XCR1	2829	genome.wustl.edu	36	3	46037724	46037724	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	46037724	46037724	G	A	SNP	XCR1	NM_001024644	human	genbank	54_36p	-1	reviewed	silent	c.720	p.P240	0.86	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CCR3	1232	genome.wustl.edu	36	3	46282600	46282600	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	46282600	46282600	T	C	SNP	CCR3	NM_001837	human	genbank	54_36p	1	reviewed	missense	c.947	p.F316S	0.65	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RTP3	83597	genome.wustl.edu	36	3	46514655	46514655	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	46514655	46514655	T	A	SNP	RTP3	NM_031440	human	genbank	54_36p	1	provisional	silent	c.99	p.L33	0.01	NULL	NULL	-	no_errors
RTP3	83597	genome.wustl.edu	36	3	46517224	46517224	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	46517224	46517224	C	A	SNP	RTP3	NM_031440	human	genbank	54_36p	1	provisional	missense	c.530	p.P177Q	0.04	NULL	NULL	-	no_errors
LRRC2	79442	genome.wustl.edu	36	3	46538078	46538078	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	46538078	46538078	C	T	SNP	LRRC2	NM_024512	human	genbank	54_36p	-1	validated	missense	c.1004	p.R335Q	0.51	superfamily_SSF52058	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1"	-	no_errors
ITPR1	3708	genome.wustl.edu	36	3	4689842	4689842	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	4689842	4689842	A	C	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	silent	c.2227	p.R743	0.32	NULL	"HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans"	-	no_errors
NBEAL2	23218	genome.wustl.edu	36	3	47025493	47025493	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	47025493	47025493	G	A	SNP	NBEAL2	NM_015175	human	genbank	54_36p	1	validated	missense	c.8038	p.A2680T	0.01	superfamily_WD40 repeat-like	"superfamily_ARM repeat,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
SETD2	29072	genome.wustl.edu	36	3	47114495	47114495	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	47114495	47114495	G	A	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	missense	c.3587	p.A1196V	1	NULL	"superfamily_Ferritin/RR_like,superfamily_SSF82199,HMMSmart_AWS,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_SRI_2"	-	no_errors
SETD2	29072	genome.wustl.edu	36	3	47117991	47117991	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	47117991	47117991	C	A	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	missense	c.3467	p.G1156V	1	"HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199"	"HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,HMMSmart_AWS,superfamily_Ferritin/RR_like,HMMPfam_SRI_2,superfamily_SSF82199"	-	no_errors
SETD2	29072	genome.wustl.edu	36	3	47138183	47138183	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	47138183	47138183	C	A	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	nonsense	c.1438	p.E480*	0.09	NULL	"HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,HMMSmart_AWS,superfamily_Ferritin/RR_like,HMMPfam_SRI_2,superfamily_SSF82199"	-	no_errors
CSPG5	10675	genome.wustl.edu	36	3	47593978	47593978	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	47593978	47593978	C	T	SNP	CSPG5	NM_006574	human	genbank	54_36p	-1	validated	missense	c.542	p.G181D	1	HMMPfam_Chon_Sulph_att	"HMMPfam_Chon_Sulph_att,HMMSmart_EGF,HMMPfam_Neural_ProG_Cyt"	-	no_errors
ITPR1	3708	genome.wustl.edu	36	3	4783381	4783381	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	4783381	4783381	A	G	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	silent	c.5568	p.P1856	0	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
DHX30	22907	genome.wustl.edu	36	3	47863811	47863811	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	47863811	47863811	G	A	SNP	DHX30	NM_138615	human	genbank	54_36p	1	reviewed	silent	c.1974	p.L658	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_dsRNA-binding domain-like,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
ITPR1	3708	genome.wustl.edu	36	3	4791925	4791925	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	4791925	4791925	G	T	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	splice_site	c.5836-1	e42-1	1	-	-	-	no_errors
MAP4	4134	genome.wustl.edu	36	3	47994421	47994421	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	47994421	47994421	G	A	SNP	MAP4	NM_002375	human	genbank	54_36p	-1	reviewed	missense	c.230	p.P77L	1	NULL	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP"	-	no_errors
LOC729349	729349	genome.wustl.edu	36	3	48137215	48137215	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48137215	48137215	G	A	SNP	LOC729349	XR_015954	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PLXNB1	5364	genome.wustl.edu	36	3	48425879	48425879	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48425879	48425879	C	G	SNP	PLXNB1	NM_002673	human	genbank	54_36p	-1	validated	silent	c.5949	p.L1983	1	"HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	###############################################################################################################################################################################################################################################################	-	no_errors
PLXNB1	5364	genome.wustl.edu	36	3	48429549	48429549	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48429549	48429549	C	A	SNP	PLXNB1	NM_002673	human	genbank	54_36p	-1	validated	missense	c.4569	p.K1523N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ATRIP	84126	genome.wustl.edu	36	3	48477017	48477017	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48477017	48477017	A	G	SNP	ATRIP	NM_130384	human	genbank	54_36p	1	reviewed	silent	c.1560	p.G520	0	NULL	NULL	-	no_errors
COL7A1	1294	genome.wustl.edu	36	3	48598288	48598288	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48598288	48598288	C	A	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	missense	c.3765	p.Q1255H	1	NULL	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	-	no_errors
COL7A1	1294	genome.wustl.edu	36	3	48604189	48604189	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48604189	48604189	C	T	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	silent	c.1428	p.P476	0.95	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
CELSR3	1951	genome.wustl.edu	36	3	48664427	48664427	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48664427	48664427	C	G	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.5810	p.R1937P	0.09	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
CELSR3	1951	genome.wustl.edu	36	3	48672827	48672827	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48672827	48672827	C	T	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.2245	p.V749I	1	"HMMSmart_SM00112,PatternScan_CADHERIN_1"	###############################################################################################################################################################################################################################################################	-	no_errors
CELSR3	1951	genome.wustl.edu	36	3	48672956	48672956	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	48672956	48672956	C	T	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.2116	p.G706S	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
P4HTM	54681	genome.wustl.edu	36	3	49017495	49017495	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49017495	49017495	C	A	SNP	P4HTM	NM_177938	human	genbank	54_36p	1	reviewed	missense	c.1085	p.P362H	0	"HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy"	"superfamily_SSF47473,HMMSmart_P4Hc,PatternScan_EF_HAND_1,HMMPfam_2OG-FeII_Oxy"	-	no_errors
QRICH1	54870	genome.wustl.edu	36	3	49044664	49044664	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49044664	49044664	T	C	SNP	QRICH1	NM_017730	human	genbank	54_36p	-1	validated	silent	c.2094	p.P698	0.98	NULL	NULL	-	no_errors
USP19	10869	genome.wustl.edu	36	3	49123255	49123255	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49123255	49123255	C	A	SNP	USP19	NM_006677	human	genbank	54_36p	-1	provisional	silent	c.3282	p.L1094	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_HSP20-like chaperones,HMMPfam_CS,HMMPfam_DUF1872,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,PatternScan_UCH_2_2"	-	no_errors
USP19	10869	genome.wustl.edu	36	3	49123457	49123457	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49123457	49123457	C	T	SNP	USP19	NM_006677	human	genbank	54_36p	-1	provisional	missense	c.3166	p.G1056S	1	"HMMPfam_UCH,superfamily_Cysteine proteinases"	"HMMPfam_UCH,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_HSP20-like chaperones,HMMPfam_DUF1872,HMMPfam_CS,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
USP19	10869	genome.wustl.edu	36	3	49128266	49128266	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49128266	49128266	C	T	SNP	USP19	NM_006677	human	genbank	54_36p	-1	provisional	silent	c.1278	p.E426	1	HMMPfam_DUF1872	"HMMPfam_UCH,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_HSP20-like chaperones,HMMPfam_DUF1872,HMMPfam_CS,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
USP19	10869	genome.wustl.edu	36	3	49129040	49129040	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49129040	49129040	G	A	SNP	USP19	NM_006677	human	genbank	54_36p	-1	provisional	silent	c.828	p.P276	0.78	HMMPfam_DUF1872	"HMMPfam_UCH,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_HSP20-like chaperones,HMMPfam_DUF1872,HMMPfam_CS,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
LAMB2	3913	genome.wustl.edu	36	3	49134427	49134427	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49134427	49134427	C	G	SNP	LAMB2	NM_002292	human	genbank	54_36p	-1	reviewed	missense	c.4877	p.R1626P	0	NULL	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
LAMB2	3913	genome.wustl.edu	36	3	49141237	49141237	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49141237	49141237	C	T	SNP	LAMB2	NM_002292	human	genbank	54_36p	-1	reviewed	missense	c.1751	p.R584H	0.96	NULL	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196"	-	no_errors
CCDC71	64925	genome.wustl.edu	36	3	49175752	49175752	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49175752	49175752	C	T	SNP	CCDC71	NM_022903	human	genbank	54_36p	-1	validated	silent	c.894	p.K298	1	NULL	NULL	-	no_errors
CCDC36	339834	genome.wustl.edu	36	3	49269671	49269671	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49269671	49269671	T	C	SNP	CCDC36	NM_178173	human	genbank	54_36p	1	validated	silent	c.1707	p.N569	0.01	NULL	NULL	-	no_errors
USP4	7375	genome.wustl.edu	36	3	49337406	49337406	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49337406	49337406	T	G	SNP	USP4	NM_003363	human	genbank	54_36p	-1	validated	missense	c.558	p.K186N	1	HMMPfam_DUF1055	"HMMSmart_SM00695,HMMPfam_DUF1055,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
RHOA	387	genome.wustl.edu	36	3	49380916	49380916	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49380916	49380916	C	T	SNP	RHOA	NM_001664	human	genbank	54_36p	-1	validated	missense	c.226	p.D76N	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174"	-	no_errors
AMT	275	genome.wustl.edu	36	3	49431466	49431466	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49431466	49431466	A	G	SNP	AMT	NM_000481	human	genbank	54_36p	-1	validated	silent	c.819	p.Y273	1	"superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T"	"superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain"	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49664690	49664690	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49664690	49664690	C	A	SNP	BSN	NM_003458	human	genbank	54_36p	1	validated	missense	c.2697	p.H899Q	1	NULL	"HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF"	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49670021	49670021	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49670021	49670021	G	A	SNP	BSN	NM_003458	human	genbank	54_36p	1	validated	silent	c.8028	p.T2676	0.7	NULL	"HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF"	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49674953	49674953	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49674953	49674953	G	T	SNP	BSN	NM_003458	human	genbank	54_36p	1	validated	missense	c.10671	p.E3557D	1	NULL	"HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF"	-	no_errors
UBA7	7318	genome.wustl.edu	36	3	49822752	49822752	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49822752	49822752	G	T	SNP	UBA7	NM_003335	human	genbank	54_36p	-1	reviewed	missense	c.1581	p.N527K	0.95	"superfamily_MoeB,HMMPfam_ThiF"	"PatternScan_UBIQUITIN_ACTIVAT_1,superfamily_MoeB,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C"	-	no_errors
TRAIP	10293	genome.wustl.edu	36	3	49860597	49860597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49860597	49860597	G	C	SNP	TRAIP	NM_005879	human	genbank	54_36p	-1	reviewed	missense	c.139	p.P47A	1	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	"PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_Prefoldin"	-	no_errors
CAMKV	79012	genome.wustl.edu	36	3	49874255	49874255	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49874255	49874255	C	T	SNP	CAMKV	NM_024046	human	genbank	54_36p	-1	validated	missense	c.275	p.R92H	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	-	no_errors
RBM6	10180	genome.wustl.edu	36	3	49980091	49980091	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	49980091	49980091	G	T	SNP	RBM6	NM_005777	human	genbank	54_36p	1	provisional	missense	c.229	p.A77S	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMSmart_ZnF_C2H2,HMMSmart_G_patch,HMMPfam_G-patch"	-	no_errors
BHLHE40	8553	genome.wustl.edu	36	3	5000108	5000108	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	5000108	5000108	C	G	SNP	BHLHE40	NM_003670	human	genbank	54_36p	1	reviewed	missense	c.970	p.P324A	1	NULL	"HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353,HMMPfam_Hairy_orange,HMMSmart_SM00511"	-	no_errors
RBM6	10180	genome.wustl.edu	36	3	50078793	50078793	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	50078793	50078793	C	G	SNP	RBM6	NM_005777	human	genbank	54_36p	1	provisional	missense	c.2797	p.P933A	1	NULL	"HMMPfam_G-patch,HMMSmart_G_patch,HMMSmart_RRM,HMMSmart_ZnF_C2H2,superfamily_SSF54928"	-	no_errors
GNAI2	2771	genome.wustl.edu	36	3	50265496	50265496	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	50265496	50265496	G	A	SNP	GNAI2	NM_002070	human	genbank	54_36p	1	validated	missense	c.340	p.A114T	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	-	no_errors
RASSF1	11186	genome.wustl.edu	36	3	50343846	50343846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	50343846	50343846	G	A	SNP	RASSF1	NM_170714	human	genbank	54_36p	-1	reviewed	missense	c.811	p.R271W	0.18	"HMMSmart_SM00314,HMMPfam_RA"	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,HMMPfam_C1_1,HMMSmart_SM00314,HMMPfam_RA"	-	no_errors
DOCK3	1795	genome.wustl.edu	36	3	51249982	51249982	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	51249982	51249982	C	T	SNP	DOCK3	NM_004947	human	genbank	54_36p	1	validated	nonsense	c.2023	p.R675*	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_Ded_cyto"	-	no_errors
DOCK3	1795	genome.wustl.edu	36	3	51345667	51345667	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	51345667	51345667	C	A	SNP	DOCK3	NM_004947	human	genbank	54_36p	1	validated	missense	c.3554	p.T1185N	1	NULL	"superfamily_SH3-domain,HMMPfam_Ded_cyto,HMMPfam_SH3_2"	-	no_errors
DOCK3	1795	genome.wustl.edu	36	3	51393767	51393767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	51393767	51393767	G	A	SNP	DOCK3	NM_004947	human	genbank	54_36p	1	validated	missense	c.5830	p.V1944I	0.97	NULL	"superfamily_SH3-domain,HMMPfam_Ded_cyto,HMMPfam_SH3_2"	-	no_errors
RAD54L2	23132	genome.wustl.edu	36	3	51648655	51648655	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	51648655	51648655	A	C	SNP	RAD54L2	NM_015106	human	genbank	54_36p	1	validated	missense	c.1717	p.S573R	1	NULL	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
RAD54L2	23132	genome.wustl.edu	36	3	51671746	51671746	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	51671746	51671746	G	T	SNP	RAD54L2	NM_015106	human	genbank	54_36p	1	validated	missense	c.3350	p.R1117L	0.36	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GPR62	118442	genome.wustl.edu	36	3	51965651	51965651	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	51965651	51965651	G	A	SNP	GPR62	NM_080865	human	genbank	54_36p	1	validated	missense	c.943	p.A315T	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
ALAS1	211	genome.wustl.edu	36	3	52215027	52215027	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	52215027	52215027	G	C	SNP	ALAS1	NM_000688	human	genbank	54_36p	1	validated	silent	c.933	p.S311	0.73	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2"	-	no_errors
DNAH1	25981	genome.wustl.edu	36	3	52363991	52363991	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	52363991	52363991	C	T	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	silent	c.3573	p.D1191	0.8	HMMPfam_DHC_N2	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
NISCH	11188	genome.wustl.edu	36	3	52497361	52497361	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	52497361	52497361	G	A	SNP	NISCH	NM_007184	human	genbank	54_36p	1	validated	missense	c.2813	p.R938H	1	NULL	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1,PatternScan_CYTOCHROME_P450"	-	no_errors
ITIH1	3697	genome.wustl.edu	36	3	52797337	52797337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	52797337	52797337	C	T	SNP	ITIH1	NM_002215	human	genbank	54_36p	1	validated	silent	c.2055	p.T685	0.02	NULL	"HMMSmart_SM00609,HMMPfam_VIT,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
ITIH3	3699	genome.wustl.edu	36	3	52808870	52808870	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	52808870	52808870	T	C	SNP	ITIH3	NM_002217	human	genbank	54_36p	1	validated	missense	c.968	p.I323T	1	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA"	"HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
ITIH4	3700	genome.wustl.edu	36	3	52838274	52838274	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3	52838274	52838274	G	T	SNP	ITIH4	NM_002218	human	genbank	54_36p	-1	validated	missense	c.152	p.T51K	1	"HMMSmart_SM00609,HMMPfam_VIT"	"HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
CACNA1D	776	genome.wustl.edu	36	3	53506237	53506237	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	53506237	53506237	G	T	SNP	CACNA1D	NM_000720	human	genbank	54_36p	1	validated	missense	c.86	p.G29V	1	NULL	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1D	776	genome.wustl.edu	36	3	53733046	53733046	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	53733046	53733046	G	A	SNP	CACNA1D	NM_000720	human	genbank	54_36p	1	validated	missense	c.2140	p.A714T	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324"	-	no_errors
IL17RB	55540	genome.wustl.edu	36	3	53858764	53858764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	53858764	53858764	G	A	SNP	IL17RB	NM_018725	human	genbank	54_36p	1	reviewed	missense	c.128	p.G43E	1	NULL	HMMPfam_SEFIR	-	no_errors
CACNA2D3	55799	genome.wustl.edu	36	3	54996819	54996819	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	54996819	54996819	A	T	SNP	CACNA2D3	NM_018398	human	genbank	54_36p	1	reviewed	nonsense	c.2689	p.R897*	1	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1"	-	no_errors
ERC2	26059	genome.wustl.edu	36	3	56001130	56001130	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	56001130	56001130	C	G	SNP	ERC2	NM_015576	human	genbank	54_36p	-1	validated	silent	c.2250	p.L750	0.94	HMMPfam_Cast	"HMMPfam_Cast,superfamily_Prefoldin"	-	no_errors
ERC2	26059	genome.wustl.edu	36	3	56305322	56305322	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	56305322	56305322	A	T	SNP	ERC2	NM_015576	human	genbank	54_36p	-1	validated	nonsense	c.839	p.L280*	1	HMMPfam_Cast	"superfamily_Prefoldin,HMMPfam_Cast"	-	no_errors
C3orf63	23272	genome.wustl.edu	36	3	56650737	56650737	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	56650737	56650737	C	G	SNP	C3orf63	NM_015224	human	genbank	54_36p	-1	validated	missense	c.1111	p.D371H	1	NULL	NULL	-	no_errors
HESX1	8820	genome.wustl.edu	36	3	57207985	57207985	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	57207985	57207985	G	C	SNP	HESX1	NM_003865	human	genbank	54_36p	-1	reviewed	missense	c.193	p.P65A	0.01	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
FLNB	2317	genome.wustl.edu	36	3	58084165	58084165	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	58084165	58084165	G	A	SNP	FLNB	NM_001457	human	genbank	54_36p	1	validated	silent	c.3432	p.E1144	0.95	"HMMPfam_Filamin,superfamily_Ig_E-set,HMMSmart_IG_FLMN"	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN"	-	no_errors
FLNB	2317	genome.wustl.edu	36	3	58086364	58086364	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	58086364	58086364	G	C	SNP	FLNB	NM_001457	human	genbank	54_36p	1	validated	missense	c.3915	p.E1305D	1	"HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin"	"HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin"	-	no_errors
ABHD6	57406	genome.wustl.edu	36	3	58254519	58254519	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	58254519	58254519	A	G	SNP	ABHD6	NM_020676	human	genbank	54_36p	1	validated	missense	c.1001	p.K334R	1	NULL	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	-	no_errors
PXK	54899	genome.wustl.edu	36	3	58343280	58343280	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	58343280	58343280	G	T	SNP	PXK	NM_017771	human	genbank	54_36p	1	provisional	splice_site	c.202-1	e4-1	1	-	-	-	no_errors
PDHB	5162	genome.wustl.edu	36	3	58389325	58389325	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	58389325	58389325	G	A	SNP	PDHB	NM_000925	human	genbank	54_36p	-1	validated	silent	c.849	p.V283	1	"superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C"	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transket_pyr,superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C"	-	no_errors
PTPRG	5793	genome.wustl.edu	36	3	61709623	61709623	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	61709623	61709623	C	T	SNP	PTPRG	NM_002841	human	genbank	54_36p	1	reviewed	silent	c.117	p.H39	0.91	NULL	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRG	5793	genome.wustl.edu	36	3	62223519	62223519	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	62223519	62223519	C	A	SNP	PTPRG	NM_002841	human	genbank	54_36p	1	reviewed	missense	c.2566	p.Q856K	1	"HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
THOC7	80145	genome.wustl.edu	36	3	63795871	63795871	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	63795871	63795871	T	A	SNP	THOC7	NM_025075	human	genbank	54_36p	-1	validated	missense	c.546	p.E182D	1	NULL	HMMPfam_THOC7	-	no_errors
PRICKLE2	166336	genome.wustl.edu	36	3	64060432	64060432	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	64060432	64060432	G	T	SNP	PRICKLE2	NM_198859	human	genbank	54_36p	-1	validated	missense	c.1870	p.L624I	1	NULL	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
ADAMTS9	56999	genome.wustl.edu	36	3	64581896	64581896	+	Missense_Mutation	SNP	T	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	G	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	3	64581896	64581896	T	G	SNP	ADAMTS9	NM_182920	human	genbank	54_36p	-1	reviewed	missense	c.2747	p.Q916P	1	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
LRIG1	26018	genome.wustl.edu	36	3	66519144	66519144	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	66519144	66519144	G	A	SNP	LRIG1	NM_015541	human	genbank	54_36p	-1	validated	silent	c.1740	p.T580	1	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
KBTBD8	84541	genome.wustl.edu	36	3	67141284	67141284	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	67141284	67141284	C	G	SNP	KBTBD8	NM_032505	human	genbank	54_36p	1	provisional	missense	c.1513	p.Q505E	1	"superfamily_Galactose oxidase central domain,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
GRM7	2917	genome.wustl.edu	36	3	6878441	6878441	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	6878441	6878441	C	A	SNP	GRM7	NM_181874	human	genbank	54_36p	1	reviewed	missense	c.366	p.F122L	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
TMF1	7110	genome.wustl.edu	36	3	69165545	69165546	+	Missense_Mutation	DNP	TC	TC	GA	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	TC	TC	TC	GA	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	69165545	69165546	TC	GA	DNP	TMF1	NM_007114	human	genbank	54_36p	-1	validated	missense	c.2245_2246	p.Q749H	1.000:1.000	NULL	NULL	-	no_errors
FRMD4B	23150	genome.wustl.edu	36	3	69313206	69313206	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	69313206	69313206	C	T	SNP	FRMD4B	NM_015123	human	genbank	54_36p	-1	validated	silent	c.2385	p.K795	0.04	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C"	-	no_errors
PDZRN3	23024	genome.wustl.edu	36	3	73516571	73516571	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	73516571	73516571	G	A	SNP	PDZRN3	NM_015009	human	genbank	54_36p	-1	provisional	silent	c.1836	p.T612	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
GRM7	2917	genome.wustl.edu	36	3	7595692	7595692	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	7595692	7595692	C	T	SNP	GRM7	NM_181874	human	genbank	54_36p	1	reviewed	missense	c.2099	p.T700I	1	HMMPfam_7tm_3	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822"	-	no_errors
LOC401076	401076	genome.wustl.edu	36	3	76566806	76566806	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	76566806	76566806	T	C	SNP	LOC401076	XR_016406	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ROBO1	6091	genome.wustl.edu	36	3	78767801	78767801	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	78767801	78767801	C	T	SNP	ROBO1	NM_002941	human	genbank	54_36p	-1	reviewed	missense	c.3185	p.R1062H	1	NULL	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
GBE1	2632	genome.wustl.edu	36	3	81837424	81837424	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	81837424	81837424	G	A	SNP	GBE1	NM_000158	human	genbank	54_36p	-1	reviewed	silent	c.174	p.N58	0.76	NULL	"superfamily_E set domains,HMMPfam_CBM_48,superfamily_(Trans)glycosidases,HMMSmart_SM00642,HMMPfam_Alpha-amylase,superfamily_Glycosyl hydrolase domain,HMMPfam_Alpha-amylase_C"	-	no_errors
LMCD1	29995	genome.wustl.edu	36	3	8584162	8584162	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	8584162	8584162	C	G	SNP	LMCD1	NM_014583	human	genbank	54_36p	1	reviewed	missense	c.976	p.L326V	1	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
CADM2	253559	genome.wustl.edu	36	3	85858344	85858344	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	85858344	85858344	A	G	SNP	CADM2	NM_153184	human	genbank	54_36p	1	validated	missense	c.23	p.N8S	1	NULL	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_4.1m"	-	no_errors
HTR1F	3355	genome.wustl.edu	36	3	88122898	88122898	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	88122898	88122898	C	A	SNP	HTR1F	NM_000866	human	genbank	54_36p	1	validated	missense	c.309	p.D103E	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HTR1F	3355	genome.wustl.edu	36	3	88122930	88122930	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	88122930	88122930	T	C	SNP	HTR1F	NM_000866	human	genbank	54_36p	1	validated	missense	c.341	p.L114P	1	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
RAD18	56852	genome.wustl.edu	36	3	8898063	8898063	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	8898063	8898063	C	G	SNP	RAD18	NM_020165	human	genbank	54_36p	-1	reviewed	missense	c.1466	p.R489T	0.95	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00734,HMMPfam_SAP,HMMSmart_SM00513"	-	no_errors
EPHA3	2042	genome.wustl.edu	36	3	89342190	89342190	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	89342190	89342190	C	T	SNP	EPHA3	NM_005233	human	genbank	54_36p	1	reviewed	missense	c.644	p.T215M	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA3	2042	genome.wustl.edu	36	3	89582187	89582187	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	89582187	89582187	G	A	SNP	EPHA3	NM_005233	human	genbank	54_36p	1	reviewed	silent	c.2667	p.K889	1	superfamily_Protein kinase-like (PK-like)	###############################################################################################################################################################################################################################################################	-	no_errors
THUMPD3	25917	genome.wustl.edu	36	3	9387893	9387893	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	9387893	9387893	T	C	SNP	THUMPD3	NM_015453	human	genbank	54_36p	1	validated	silent	c.480	p.N160	0.07	NULL	"HMMPfam_THUMP,HMMPfam_UPF0020,superfamily_SSF53335,PatternScan_UPF0020"	-	no_errors
SETD5	55209	genome.wustl.edu	36	3	9450570	9450570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	9450570	9450570	G	A	SNP	SETD5	NM_001080517	human	genbank	54_36p	1	provisional	missense	c.113	p.S38N	1	NULL	"superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
SETD5	55209	genome.wustl.edu	36	3	9487592	9487592	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3	9487592	9487592	G	A	SNP	SETD5	NM_001080517	human	genbank	54_36p	1	provisional	silent	c.3174	p.Q1058	1	NULL	"HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	-	no_errors
CPNE9	151835	genome.wustl.edu	36	3	9743379	9743379	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	3	9743379	9743379	G	A	SNP	CPNE9	NM_153635	human	genbank	54_36p	1	validated	missense	c.1375	p.V459I	0.99	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	-	no_errors
BRPF1	7862	genome.wustl.edu	36	3	9758744	9758744	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	9758744	9758744	G	T	SNP	BRPF1	NM_001003694	human	genbank	54_36p	1	reviewed	silent	c.1890	p.L630	1	"superfamily_Bromodomain,HMMSmart_BROMO"	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP"	-	no_errors
EPHA6	285220	genome.wustl.edu	36	3	98188911	98188911	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	98188911	98188911	A	G	SNP	EPHA6	NM_001080448	human	genbank	54_36p	1	provisional	silent	c.498	p.T166	0.96	"superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615"	###############################################################################################################################################################################################################################################################	-	no_errors
MINA	84864	genome.wustl.edu	36	3	99151416	99151416	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	99151416	99151416	G	C	SNP	MINA	NM_001042533	human	genbank	54_36p	-1	validated	missense	c.1022	p.P341R	1	HMMPfam_Cupin_4	"superfamily_Clavaminate synthase-like,HMMPfam_Cupin_4"	-	no_errors
OR5H15	403274	genome.wustl.edu	36	3	99370996	99370996	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	99370996	99370996	C	A	SNP	OR5H15	NM_001005515	human	genbank	54_36p	1	provisional	missense	c.763	p.L255I	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5H6	79295	genome.wustl.edu	36	3	99466357	99466357	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	3	99466357	99466357	T	C	SNP	OR5H6	NM_001005479	human	genbank	54_36p	1	provisional	missense	c.539	p.F180S	0.02	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5H2	79310	genome.wustl.edu	36	3	99484630	99484630	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	99484630	99484630	G	T	SNP	OR5H2	NM_001005482	human	genbank	54_36p	1	provisional	missense	c.209	p.S70I	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CRELD1	78987	genome.wustl.edu	36	3	9960176	9960176	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	9960176	9960176	T	A	SNP	CRELD1	NM_001031717	human	genbank	54_36p	1	validated	missense	c.1025	p.I342N	1	"HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_EGF_2"	"superfamily_Grow_fac_recept,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMSmart_FU,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL"	-	no_errors
OR5K2	402135	genome.wustl.edu	36	3	99699652	99699652	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	99699652	99699652	A	T	SNP	OR5K2	NM_001004737	human	genbank	54_36p	1	provisional	silent	c.438	p.T146	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5K2	402135	genome.wustl.edu	36	3	99699836	99699836	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	99699836	99699836	G	A	SNP	OR5K2	NM_001004737	human	genbank	54_36p	1	provisional	missense	c.622	p.V208I	0	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
LOC339843	339843	genome.wustl.edu	36	3	99861734	99861734	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	99861734	99861734	C	T	SNP	LOC339843	XR_016598	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000215208	0	genome.wustl.edu	36	9	30790374	30790374	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	30790374	30790374	T	C	SNP	ENSG00000215208	ENST00000399791	human	ensembl	54_36p	-1	novel	splice_site	c.NULL	NULL	0.99	-	-	-	no_coding_region:pseudogene
ENSG00000210307	0	genome.wustl.edu	36	15	30974745	30974745	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	30974745	30974745	T	A	SNP	ENSG00000210307	ENST00000387572	human	ensembl	54_36p	1	novel	rna	NULL	NULL	0	-	-	-	pseudogene
ENSG00000217332	0	genome.wustl.edu	36	10	31018437	31018437	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	31018437	31018437	A	C	SNP	ENSG00000217332	ENST00000404846	human	ensembl	54_36p	1	known	splice_site	c.NULL	NULL	1	-	-	-	no_coding_region:pseudogene
FLJ43944	400593	genome.wustl.edu	36	17	31258402	31258402	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	31258402	31258402	G	C	SNP	FLJ43944	XR_042037	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.03	-	-	-	no_errors
LOC100133317	100133317	genome.wustl.edu	36	7	32844570	32844570	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	32844570	32844570	G	A	SNP	LOC100133317	XR_039293	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000214613	0	genome.wustl.edu	36	16	32928349	32928349	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	32928349	32928349	C	T	SNP	ENSG00000214613	ENST00000398668	human	ensembl	54_36p	1	known	nonsense	c.199	p.R67*	0.99	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_start_codon:no_stop_codon
ENSG00000205454	0	genome.wustl.edu	36	16	33554989	33554989	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	33554989	33554989	T	C	SNP	ENSG00000205454	ENST00000360102	human	ensembl	54_36p	-1	known	missense	c.112	p.R38G	0.25	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_start_codon:no_stop_codon
LOC100132086	100132086	genome.wustl.edu	36	12	34293670	34293670	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	34293670	34293670	C	G	SNP	LOC100132086	XR_037578	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC100132910	100132910	genome.wustl.edu	36	18	35168915	35168915	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	35168915	35168915	G	C	SNP	LOC100132910	XM_001720527	human	genbank	54_36p	1	model	missense	c.109	p.V37L	0.99	NULL	NULL	-	no_errors
uc010lvw.1	0	genome.wustl.edu	36	8	36780606	36780606	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	36780606	36780606	G	A	SNP	uc010lvw.1	ENST00000399881	human	ensembl	54_36p	1	known	silent	c.15	p.T5	0	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a"	-	no_start_codon:no_stop_codon
uc010djz.1	0	genome.wustl.edu	36	18	37469	37469	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	37469	37469	A	C	SNP	uc010djz.1	ENST00000308911	human	ensembl	54_36p	-1	known	missense	c.1256	p.V419G	1	superfamily_Tub_FtsZ_C	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	-	no_errors
LOC100128525	100128525	genome.wustl.edu	36	22	38601808	38601808	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	38601808	38601808	G	C	SNP	LOC100128525	XM_001716642	human	genbank	54_36p	1	model	missense	c.532	p.V178L	1	"superfamily_ISP domain,HMMPfam_Rieske"	"HMMPfam_Ubiq-Cytc-red_N,superfamily_Non-globular alpha beta subunits of globular proteins,HMMPfam_UCR_TM,superfamily_ISP transmembrane anchor,superfamily_ISP domain,HMMPfam_Rieske"	-	pseudogene
LOC400750	400750	genome.wustl.edu	36	1	38948805	38948805	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	38948805	38948805	G	T	SNP	LOC400750	XR_039444	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ADH6	130	genome.wustl.edu	36	4	100350650	100350653	+	Frame_Shift_Del	DEL	ACTG	-	ACTG	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	-	-	-	ACTG	ACTG	ACTG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	4	100350650	100350653	ACTG	-	DEL	ADH6	NM_001102470	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.295_292	p.Q98fs	1.000:0.999:1.000:0.989	"superfamily_GroES_like,HMMPfam_ADH_N"	"superfamily_GroES_like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N"	"(deletion:cds_exon[100350595,100350682])"	no_errors
ADH1A	124	genome.wustl.edu	36	4	100427037	100427037	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	100427037	100427037	G	A	SNP	ADH1A	NM_000667	human	genbank	54_36p	-1	reviewed	silent	c.252	p.V84	0.96	"superfamily_GroES-like,HMMPfam_ADH_N"	"superfamily_GroES-like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N"	-	no_errors
ADH1C	126	genome.wustl.edu	36	4	100476955	100476955	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	100476955	100476955	T	C	SNP	ADH1C	NM_000669	human	genbank	54_36p	-1	reviewed	missense	c.1105	p.I369V	0.95	superfamily_GroES-like	"superfamily_GroES-like,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N"	-	pseudogene
ADH1C	126	genome.wustl.edu	36	4	100488002	100488002	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4	100488002	100488002	G	A	SNP	ADH1C	NM_000669	human	genbank	54_36p	-1	reviewed	silent	c.43	p.L15	1	superfamily_GroES-like	"superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains"	-	pseudogene
ZNF518B	85460	genome.wustl.edu	36	4	10053863	10053881	+	Frame_Shift_Del	DEL	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	-	GTTGCTTCTATCAAATGCC	GTTGCTTCTATCAAATGCC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	10053863	10053881	GTTGCTTCTATCAAATGCC	-	DEL	ZNF518B	NM_053042	human	genbank	54_36p	-1	validated	frame_shift_del	c.3188_3170	p.R1057fs	0.992:0.992:0.828:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.797:0.862	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[10053826,10057050])"	no_errors
RG9MTD2	93587	genome.wustl.edu	36	4	100698372	100698372	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	100698372	100698372	G	A	SNP	RG9MTD2	NM_152292	human	genbank	54_36p	-1	validated	missense	c.205	p.R69C	1	NULL	HMMPfam_tRNA_m1G_MT	-	no_errors
MTTP	4547	genome.wustl.edu	36	4	100762958	100762958	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	100762958	100762958	A	T	SNP	MTTP	NM_000253	human	genbank	54_36p	1	reviewed	missense	c.2615	p.Q872L	1	NULL	"superfamily_Lipid_transp_b-sht_shell,HMMPfam_Vitellogenin_N,HMMSmart_LPD_N,superfamily_LV_superhelical"	-	no_errors
BANK1	55024	genome.wustl.edu	36	4	102970198	102970198	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	102970198	102970198	C	T	SNP	BANK1	NM_017935	human	genbank	54_36p	1	validated	missense	c.281	p.T94I	0.99	NULL	superfamily_Ankyrin repeat	-	no_errors
NFKB1	4790	genome.wustl.edu	36	4	103678093	103678093	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	103678093	103678093	A	G	SNP	NFKB1	NM_003998	human	genbank	54_36p	1	reviewed	silent	c.210	p.L70	0.99	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD,superfamily_ANK"	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD,PatternScan_REL_1,superfamily_ANK,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Ank,HMMSmart_ANK,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
NHEDC1	150159	genome.wustl.edu	36	4	104047236	104047236	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	104047236	104047236	C	G	SNP	NHEDC1	NM_139173	human	genbank	54_36p	-1	reviewed	missense	c.1101	p.K367N	0.38	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
CENPE	1062	genome.wustl.edu	36	4	104249486	104249486	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	104249486	104249486	A	G	SNP	CENPE	NM_001813	human	genbank	54_36p	-1	validated	missense	c.7934	p.F2645S	0.15	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I"	-	no_errors
CENPE	1062	genome.wustl.edu	36	4	104257209	104257209	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	104257209	104257209	C	T	SNP	CENPE	NM_001813	human	genbank	54_36p	-1	validated	missense	c.7416	p.M2472I	0.24	NULL	"PatternScan_AA_TRNA_LIGASE_I,HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CENPE	1062	genome.wustl.edu	36	4	104274451	104274451	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	104274451	104274451	G	A	SNP	CENPE	NM_001813	human	genbank	54_36p	-1	validated	silent	c.6570	p.S2190	0.93	NULL	"PatternScan_AA_TRNA_LIGASE_I,HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
EEF1A1P9	441032	genome.wustl.edu	36	4	106626006	106626006	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	106626006	106626006	C	G	SNP	EEF1AL7	NR_003586	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
CASP6	839	genome.wustl.edu	36	4	110838932	110838932	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	110838932	110838932	A	C	SNP	CASP6	NM_001226	human	genbank	54_36p	-1	reviewed	missense	c.56	p.M19R	0.74	NULL	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
RRH	10692	genome.wustl.edu	36	4	110984743	110984743	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	110984743	110984743	G	C	SNP	RRH	NM_006583	human	genbank	54_36p	1	reviewed	missense	c.955	p.V319L	0.66	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN"	-	no_errors
ALPK1	80216	genome.wustl.edu	36	4	113571611	113571611	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	113571611	113571611	G	A	SNP	ALPK1	NM_001102406	human	genbank	54_36p	1	validated	missense	c.1459	p.G487R	0.94	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase"	-	no_errors
ALPK1	80216	genome.wustl.edu	36	4	113572696	113572696	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	113572696	113572696	C	T	SNP	ALPK1	NM_001102406	human	genbank	54_36p	1	validated	silent	c.2544	p.A848	0.02	NULL	"HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)"	-	no_errors
LOC441034	441034	genome.wustl.edu	36	4	113928956	113928956	+	RNA	SNP	A	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	113928956	113928956	A	G	SNP	LOC441034	XR_016809	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ANK2	287	genome.wustl.edu	36	4	114434045	114434045	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	114434045	114434045	A	T	SNP	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	missense	c.2377	p.N793Y	1	"superfamily_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
CAMK2D	817	genome.wustl.edu	36	4	114600794	114600794	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	114600794	114600794	A	C	SNP	CAMK2D	NM_001221	human	genbank	54_36p	-1	reviewed	missense	c.1162	p.L388V	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_CaMKII_AD"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_CaMKII_AD"	-	no_errors
ARSJ	79642	genome.wustl.edu	36	4	115043527	115043527	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	115043527	115043527	G	A	SNP	ARSJ	NM_024590	human	genbank	54_36p	-1	validated	silent	c.1152	p.L384	1	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like"	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2"	-	no_errors
UGT8	7368	genome.wustl.edu	36	4	115763968	115763968	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	115763968	115763968	C	T	SNP	UGT8	NM_003360	human	genbank	54_36p	1	validated	silent	c.483	p.G161	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
CTBP1	1487	genome.wustl.edu	36	4	1197364	1197364	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	1197364	1197364	G	T	SNP	CTBP1	NM_001328	human	genbank	54_36p	-1	reviewed	missense	c.923	p.P308H	1	"HMMPfam_2-Hacid_dh,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_2-Hacid_dh_C"	"superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_2-Hacid_dh,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_1,PatternScan_D_2_HYDROXYACID_DH_3"	-	no_errors
SYNPO2	171024	genome.wustl.edu	36	4	120172443	120172443	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	120172443	120172443	C	T	SNP	SYNPO2	NM_133477	human	genbank	54_36p	1	validated	missense	c.3065	p.S1022L	0.04	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
USP53	54532	genome.wustl.edu	36	4	120408927	120408927	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4	120408927	120408927	G	C	SNP	USP53	NM_019050	human	genbank	54_36p	1	validated	missense	c.1192	p.D398H	0.77	NULL	"superfamily_SSF54001,HMMPfam_UCH"	-	no_errors
TRPC3	7222	genome.wustl.edu	36	4	123043572	123043572	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	123043572	123043572	A	G	SNP	TRPC3	NM_003305	human	genbank	54_36p	-1	validated	missense	c.2129	p.V710A	1	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans"	-	no_errors
TRPC3	7222	genome.wustl.edu	36	4	123065657	123065657	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	123065657	123065657	C	G	SNP	TRPC3	NM_003305	human	genbank	54_36p	-1	validated	missense	c.923	p.R308P	1	NULL	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans,HMMPfam_TRP_2"	-	no_errors
KIAA1109	84162	genome.wustl.edu	36	4	123380667	123380667	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	123380667	123380667	T	A	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	silent	c.4380	p.P1460	1	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_FSA_C"	-	no_errors
C4orf42	92070	genome.wustl.edu	36	4	1234461	1234461	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	1234461	1234461	A	T	SNP	C4orf42	NM_052861	human	genbank	54_36p	1	validated	missense	c.100	p.R34W	0.01	NULL	NULL	-	no_errors
KIAA1109	84162	genome.wustl.edu	36	4	123487309	123487309	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	123487309	123487309	A	G	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	missense	c.12815	p.Y4272C	1	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_FSA_C"	-	no_errors
BBS12	166379	genome.wustl.edu	36	4	123882867	123882867	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	123882867	123882867	A	T	SNP	BBS12	NM_152618	human	genbank	54_36p	1	validated	missense	c.370	p.S124C	1	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1"	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like"	-	no_errors
FGF2	2247	genome.wustl.edu	36	4	124032998	124032998	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	124032998	124032998	C	G	SNP	FGF2	NM_002006	human	genbank	54_36p	1	reviewed	missense	c.864	p.S288R	1	superfamily_Cytokine	"superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
SPRY1	10252	genome.wustl.edu	36	4	124542801	124542801	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	124542801	124542801	T	C	SNP	SPRY1	NM_005841	human	genbank	54_36p	1	validated	missense	c.605	p.L202S	0.96	HMMPfam_Sprouty	HMMPfam_Sprouty	-	no_errors
FAT4	79633	genome.wustl.edu	36	4	126549081	126549081	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	126549081	126549081	G	A	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	missense	c.5602	p.D1868N	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT4	79633	genome.wustl.edu	36	4	126628179	126628179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	126628179	126628179	C	T	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	missense	c.12875	p.P4292L	1	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPA4L	22824	genome.wustl.edu	36	4	128934695	128934695	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	128934695	128934695	T	C	SNP	HSPA4L	NM_014278	human	genbank	54_36p	1	provisional	silent	c.121	p.L41	1	"superfamily_SSF53067,HMMPfam_HSP70"	"superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934"	-	no_errors
BOD1L	259282	genome.wustl.edu	36	4	13221714	13221714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	13221714	13221714	G	A	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	missense	c.1433	p.S478L	1	superfamily_SSF81995	"superfamily_SSF81995,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
SETD7	80854	genome.wustl.edu	36	4	140652340	140652340	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	140652340	140652340	C	A	SNP	SETD7	NM_030648	human	genbank	54_36p	-1	validated	missense	c.1028	p.G343V	0.88	"superfamily_SET domain,HMMPfam_SET"	"superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMPfam_MORN,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
MGST2	4258	genome.wustl.edu	36	4	140844720	140844720	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	140844720	140844720	A	T	SNP	MGST2	NM_002413	human	genbank	54_36p	1	reviewed	missense	c.412	p.N138Y	0.01	NULL	"HMMPfam_MAPEG,PatternScan_FLAP_GST2_LTC4S"	-	no_errors
CLGN	1047	genome.wustl.edu	36	4	141531248	141531248	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	141531248	141531248	G	A	SNP	CLGN	NM_004362	human	genbank	54_36p	-1	reviewed	missense	c.1736	p.S579F	1	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Calreticulin,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,superfamily_P-domain of calnexin/calreticulin,PatternScan_CALRETICULIN_REPEAT"	-	no_errors
CLGN	1047	genome.wustl.edu	36	4	141541110	141541110	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	141541110	141541110	G	C	SNP	CLGN	NM_004362	human	genbank	54_36p	-1	reviewed	missense	c.545	p.P182R	1	"HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CALRETICULIN_2"	"HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_P-domain of calnexin/calreticulin,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,PatternScan_CALRETICULIN_REPEAT"	-	no_errors
UCP1	7350	genome.wustl.edu	36	4	141700559	141700559	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	141700559	141700559	A	G	SNP	UCP1	NM_021833	human	genbank	54_36p	-1	reviewed	missense	c.865	p.F289L	1	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	-	no_errors
INPP4B	8821	genome.wustl.edu	36	4	143262846	143262846	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	143262846	143262846	C	A	SNP	INPP4B	NM_001101669	human	genbank	54_36p	-1	reviewed	missense	c.2020	p.D674Y	1	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
USP38	84640	genome.wustl.edu	36	4	144355152	144355152	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	144355152	144355152	A	G	SNP	USP38	NM_032557	human	genbank	54_36p	1	validated	missense	c.2573	p.Y858C	1	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_2"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
ZNF718	255403	genome.wustl.edu	36	4	145370	145370	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	145370	145370	A	C	SNP	ZNF718	ENST00000400172	human	ensembl	54_36p	1	known	missense	c.234	p.L78F	0	NULL	NULL	-	no_errors
HHIP	64399	genome.wustl.edu	36	4	145848838	145848838	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	145848838	145848838	C	A	SNP	HHIP	NM_022475	human	genbank	54_36p	1	reviewed	missense	c.1226	p.P409Q	0.99	superfamily_Soluble quinoprotein glucose dehydrogenase	"HMMPfam_Folate_rec,superfamily_Soluble quinoprotein glucose dehydrogenase,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2"	-	no_errors
HHIP	64399	genome.wustl.edu	36	4	145852675	145852675	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	145852675	145852675	T	C	SNP	HHIP	NM_022475	human	genbank	54_36p	1	reviewed	splice_site	c.1423+2	e8+2	1	-	-	-	no_errors
OTUD4	54726	genome.wustl.edu	36	4	146278262	146278262	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	146278262	146278262	A	C	SNP	OTUD4	NM_001102653	human	genbank	54_36p	-1	reviewed	missense	c.2920	p.S974A	1	NULL	"superfamily_SSF54001,HMMPfam_OTU"	-	no_errors
LOC729497	729497	genome.wustl.edu	36	4	146765721	146765721	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	146765721	146765721	G	A	SNP	LOC729497	XR_015940	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.92	-	-	-	pseudogene
LOC90826	90826	genome.wustl.edu	36	4	148814343	148814343	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	148814343	148814343	A	T	SNP	LOC90826	NM_138364	human	genbank	54_36p	-1	predicted	silent	c.471	p.L157	0.99	"superfamily_TPR-like,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"superfamily_TPR-like,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
DCLK2	166614	genome.wustl.edu	36	4	151388206	151388206	+	Missense_Mutation	SNP	G	A	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	4	151388206	151388206	G	A	SNP	DCLK2	NM_001040260	human	genbank	54_36p	1	validated	missense	c.1780	p.E594K	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
LRBA	987	genome.wustl.edu	36	4	151490617	151490617	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	151490617	151490617	T	C	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.7372	p.I2458V	1	"superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like"	"superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
LRBA	987	genome.wustl.edu	36	4	151612283	151612283	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	151612283	151612283	A	T	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.6643	p.W2215R	1	"HMMPfam_Beach,superfamily_BEACH domain"	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
RPS3A	6189	genome.wustl.edu	36	4	152243643	152243643	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	152243643	152243643	G	A	SNP	RPS3A	NM_001006	human	genbank	54_36p	1	reviewed	silent	c.525	p.E175	1	HMMPfam_Ribosomal_S3Ae	"HMMPfam_Ribosomal_S3Ae,PatternScan_RIBOSOMAL_S3AE"	-	no_errors
FBXL5	26234	genome.wustl.edu	36	4	15237620	15237629	+	Frame_Shift_Del	DEL	AGTCTGGGTA	AGTCTGGGTA	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	AGTCTGGGTA	AGTCTGGGTA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4	15237620	15237629	AGTCTGGGTA	-	DEL	FBXL5	NM_012161	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1098_1089	p.Q365fs	0.998:1.000:1.000:0.998:1.000:1.000:0.998:1.000:1.000:0.991	"superfamily_RNI-like,HMMSmart_SM00367"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_RNI-like,HMMSmart_SM00367,HMMPfam_LRR_1"	"(deletion:cds_exon[15237594,15237676])"	no_errors
FBXW7	55294	genome.wustl.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	153466739	153466739	G	A	SNP	FBXW7	NM_033632	human	genbank	54_36p	-1	reviewed	missense	c.1513	p.R505C	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
TIGD4	201798	genome.wustl.edu	36	4	153911130	153911130	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	153911130	153911130	C	T	SNP	TIGD4	NM_145720	human	genbank	54_36p	-1	reviewed	silent	c.477	p.S159	0.12	NULL	"HMMPfam_CENP-B_N,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00674,HMMPfam_DDE"	-	no_errors
ARFIP1	27236	genome.wustl.edu	36	4	154028823	154028823	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	154028823	154028823	C	G	SNP	ARFIP1	NM_001025595	human	genbank	54_36p	1	validated	missense	c.880	p.Q294E	1	HMMPfam_Arfaptin	HMMPfam_Arfaptin	-	no_errors
KIAA0922	23240	genome.wustl.edu	36	4	154722035	154722035	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	154722035	154722035	T	G	SNP	KIAA0922	NM_015196	human	genbank	54_36p	1	validated	silent	c.321	p.V107	0.01	NULL	NULL	-	no_errors
DCHS2	54798	genome.wustl.edu	36	4	155461499	155461499	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4	155461499	155461499	T	A	SNP	DCHS2	NM_017639	human	genbank	54_36p	-1	validated	missense	c.3137	p.E1046V	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
FGB	2244	genome.wustl.edu	36	4	155711031	155711031	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	155711031	155711031	G	T	SNP	FGB	NM_005141	human	genbank	54_36p	1	reviewed	missense	c.1255	p.D419Y	1	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C"	"HMMPfam_Fib_beta,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
FGB	2244	genome.wustl.edu	36	4	155711191	155711191	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	155711191	155711191	G	A	SNP	FGB	NM_005141	human	genbank	54_36p	1	reviewed	missense	c.1415	p.G472E	1	"HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like"	"HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fib_beta"	-	no_errors
PROM1	8842	genome.wustl.edu	36	4	15600486	15600486	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	15600486	15600486	G	T	SNP	PROM1	NM_006017	human	genbank	54_36p	-1	reviewed	missense	c.2043	p.H681Q	0.17	HMMPfam_Prominin	HMMPfam_Prominin	-	no_errors
PROM1	8842	genome.wustl.edu	36	4	15629230	15629230	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	15629230	15629230	G	T	SNP	PROM1	NM_006017	human	genbank	54_36p	-1	reviewed	missense	c.816	p.N272K	0.92	HMMPfam_Prominin	HMMPfam_Prominin	-	no_errors
ACCN5	51802	genome.wustl.edu	36	4	156994844	156994844	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4	156994844	156994844	A	T	SNP	ACCN5	NM_017419	human	genbank	54_36p	-1	reviewed	missense	c.420	p.H140Q	0.18	HMMPfam_ASC	"PatternScan_ASC,HMMPfam_ASC"	-	no_errors
NAF1	92345	genome.wustl.edu	36	4	164269865	164269865	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	164269865	164269865	G	C	SNP	NAF1	NM_138386	human	genbank	54_36p	-1	validated	missense	c.1119	p.F373L	0.39	NULL	HMMPfam_NAF1	-	no_errors
ANP32C	23520	genome.wustl.edu	36	4	165338253	165338253	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4	165338253	165338253	C	T	SNP	ANP32C	NM_012403	human	genbank	54_36p	-1	reviewed	missense	c.61	p.E21K	1	superfamily_L domain-like	"superfamily_L domain-like,HMMPfam_LRR_1"	-	no_errors
TLL1	7092	genome.wustl.edu	36	4	167135691	167135691	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	167135691	167135691	C	T	SNP	TLL1	NM_012464	human	genbank	54_36p	1	reviewed	silent	c.543	p.A181	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin"	###############################################################################################################################################################################################################################################################	-	no_errors
DDX60L	91351	genome.wustl.edu	36	4	169552223	169552223	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	169552223	169552223	C	G	SNP	DDX60L	NM_001012967	human	genbank	54_36p	-1	validated	missense	c.3778	p.V1260L	0.36	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C"	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
PALLD	23022	genome.wustl.edu	36	4	170061530	170061530	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	170061530	170061530	C	T	SNP	PALLD	NM_016081	human	genbank	54_36p	1	validated	silent	c.2469	p.H823	1	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,PatternScan_DEHYDRATASE_SER_THR"	-	no_errors
NEK1	4750	genome.wustl.edu	36	4	170713557	170713557	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	170713557	170713557	C	T	SNP	NEK1	NM_012224	human	genbank	54_36p	-1	validated	missense	c.1451	p.R484H	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CLCN3	1182	genome.wustl.edu	36	4	170871004	170871004	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	170871004	170871004	C	G	SNP	CLCN3	NM_173872	human	genbank	54_36p	1	validated	missense	c.2349	p.C783W	1	"HMMPfam_CBS,superfamily_SSF54631,HMMSmart_CBS"	"superfamily_Cl-channel_core,HMMPfam_Voltage_CLC,HMMPfam_CBS,HMMSmart_CBS,superfamily_SSF54631"	-	no_errors
C4orf27	54969	genome.wustl.edu	36	4	170899710	170899710	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	170899710	170899710	G	A	SNP	C4orf27	NM_017867	human	genbank	54_36p	-1	validated	silent	c.621	p.T207	0.07	HMMPfam_DUF2228	HMMPfam_DUF2228	-	no_errors
QDPR	5860	genome.wustl.edu	36	4	17115158	17115158	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	17115158	17115158	C	A	SNP	QDPR	NM_000320	human	genbank	54_36p	-1	reviewed	missense	c.237	p.K79N	1	"HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains"	"HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_ADH_SHORT"	-	no_errors
DCAF16	54876	genome.wustl.edu	36	4	17414271	17414271	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	17414271	17414271	T	C	SNP	C4orf30	NM_017741	human	genbank	54_36p	-1	predicted	missense	c.592	p.T198A	1	NULL	NULL	-	no_errors
ADAM29	11086	genome.wustl.edu	36	4	176134255	176134255	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	176134255	176134255	G	T	SNP	ADAM29	NM_014269	human	genbank	54_36p	1	reviewed	missense	c.1004	p.G335V	0.56	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors
ADAM29	11086	genome.wustl.edu	36	4	176134344	176134344	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	176134344	176134344	A	G	SNP	ADAM29	NM_014269	human	genbank	54_36p	1	reviewed	missense	c.1093	p.K365E	0	"HMMPfam_Reprolysin,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
WWC2	80014	genome.wustl.edu	36	4	184403640	184403640	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	184403640	184403640	C	T	SNP	WWC2	NM_024949	human	genbank	54_36p	1	validated	missense	c.680	p.S227F	1	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
ING2	3622	genome.wustl.edu	36	4	184669015	184669015	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	184669015	184669015	G	T	SNP	ING2	NM_001564	human	genbank	54_36p	1	validated	missense	c.759	p.W253C	1	"superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1"	"superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
LOC391722	391722	genome.wustl.edu	36	4	185457678	185457678	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	185457678	185457678	G	C	SNP	LOC391722	XM_373042	human	genbank	54_36p	-1	model	missense	c.732	p.N244K	1	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
IRF2	3660	genome.wustl.edu	36	4	185577632	185577632	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	185577632	185577632	A	G	SNP	IRF2	NM_002199	human	genbank	54_36p	-1	reviewed	missense	c.172	p.W58R	1	"HMMSmart_SM00348,superfamily_Winged helix DNA-binding domain,HMMPfam_IRF,PatternScan_IRF"	"HMMSmart_SM00348,superfamily_Winged helix DNA-binding domain,HMMPfam_IRF,PatternScan_IRF"	-	no_errors
ACSL1	2180	genome.wustl.edu	36	4	185916019	185916019	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	185916019	185916019	C	T	SNP	ACSL1	NM_001995	human	genbank	54_36p	-1	reviewed	nonsense	c.1832	p.W611*	1	superfamily_Acetyl-CoA synthetase-like	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
SLC25A4	291	genome.wustl.edu	36	4	186303363	186303363	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	186303363	186303363	G	A	SNP	SLC25A4	NM_001151	human	genbank	54_36p	1	validated	missense	c.563	p.R188K	1	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	-	no_errors
SNX25	83891	genome.wustl.edu	36	4	186504684	186504684	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	186504684	186504684	G	A	SNP	SNX25	NM_031953	human	genbank	54_36p	1	validated	splice_site	c.1696-1	e12-1	1	-	-	-	no_errors
PDLIM3	27295	genome.wustl.edu	36	4	186664680	186664680	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	186664680	186664680	G	A	SNP	PDLIM3	NM_014476	human	genbank	54_36p	-1	reviewed	silent	c.783	p.D261	0.99	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00735,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
SORBS2	8470	genome.wustl.edu	36	4	186773046	186773046	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	186773046	186773046	T	C	SNP	SORBS2	NM_021069	human	genbank	54_36p	-1	reviewed	missense	c.2816	p.E939G	1	superfamily_SH3-domain	"HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
TLR3	7098	genome.wustl.edu	36	4	187240618	187240618	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187240618	187240618	A	G	SNP	TLR3	NM_003265	human	genbank	54_36p	1	reviewed	missense	c.784	p.T262A	0	superfamily_SSF52058	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
KLKB1	3818	genome.wustl.edu	36	4	187392185	187392185	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4	187392185	187392185	C	A	SNP	KLKB1	NM_000892	human	genbank	54_36p	1	reviewed	missense	c.307	p.Q103K	1	"HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1"	"HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
KLKB1	3818	genome.wustl.edu	36	4	187414210	187414210	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187414210	187414210	C	A	SNP	KLKB1	NM_000892	human	genbank	54_36p	1	reviewed	silent	c.1560	p.T520	1	"HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys"	"HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,HMMPfam_PAN_1,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
MTNR1A	4543	genome.wustl.edu	36	4	187692302	187692302	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187692302	187692302	G	T	SNP	MTNR1A	NM_005958	human	genbank	54_36p	-1	reviewed	missense	c.588	p.F196L	0.96	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187747329	187747329	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187747329	187747329	G	T	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.13178	p.P4393H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187777672	187777672	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187777672	187777672	C	T	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	silent	c.7062	p.R2354	0.94	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187777869	187777869	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187777869	187777869	C	T	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.6865	p.A2289T	0	"HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187794239	187794239	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187794239	187794239	C	T	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.4117	p.V1373I	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187865550	187865550	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187865550	187865550	T	C	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.2426	p.H809R	0.01	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187867227	187867227	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187867227	187867227	G	A	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.749	p.A250V	1	"HMMSmart_SM00112,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187867460	187867460	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187867460	187867460	G	A	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	silent	c.516	p.S172	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187867507	187867507	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	187867507	187867507	A	G	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.469	p.S157P	0.94	"HMMPfam_Cadherin,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIML1	339976	genome.wustl.edu	36	4	189305446	189305446	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	189305446	189305446	T	A	SNP	TRIML1	NM_178556	human	genbank	54_36p	1	provisional	missense	c.1333	p.F445I	0.99	"HMMPfam_SPRY,HMMSmart_SPRY"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
WHSC1	7468	genome.wustl.edu	36	4	1950336	1950336	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	1950336	1950336	A	C	SNP	WHSC1	NM_001042424	human	genbank	54_36p	1	reviewed	silent	c.4000	p.R1334	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT2	9353	genome.wustl.edu	36	4	20102532	20102532	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	20102532	20102532	G	A	SNP	SLIT2	NM_004787	human	genbank	54_36p	1	provisional	missense	c.826	p.A276T	0.92	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT2	9353	genome.wustl.edu	36	4	20228322	20228322	+	Silent	SNP	G	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	4	20228322	20228322	G	A	SNP	SLIT2	NM_004787	human	genbank	54_36p	1	provisional	silent	c.4299	p.Q1433	1	"HMMSmart_SM00274,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
KCNIP4	80333	genome.wustl.edu	36	4	20493348	20493348	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	20493348	20493348	C	T	SNP	KCNIP4	NM_025221	human	genbank	54_36p	-1	reviewed	silent	c.144	p.T48	0.88	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	overly_large_intron
PI4K2B	55300	genome.wustl.edu	36	4	24879227	24879227	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4	24879227	24879227	G	C	SNP	PI4K2B	NM_018323	human	genbank	54_36p	1	validated	missense	c.1143	p.L381F	1	HMMPfam_PI3_PI4_kinase	"PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_PI3_PI4_kinase"	-	no_errors
ANAPC4	29945	genome.wustl.edu	36	4	25026255	25026255	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	25026255	25026255	A	G	SNP	ANAPC4	NM_013367	human	genbank	54_36p	1	reviewed	silent	c.1896	p.R632	0.98	NULL	superfamily_WD40 repeat-like	-	no_errors
SLC34A2	10568	genome.wustl.edu	36	4	25280501	25280501	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	25280501	25280501	G	C	SNP	SLC34A2	NM_006424	human	genbank	54_36p	1	validated	missense	c.770	p.G257A	1	HMMPfam_Na_Pi_cotrans	HMMPfam_Na_Pi_cotrans	-	no_errors
FAM193A	8603	genome.wustl.edu	36	4	2631482	2631482	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	2631482	2631482	G	A	SNP	C4orf8	NM_003704	human	genbank	54_36p	1	validated	missense	c.775	p.V259M	1	NULL	NULL	-	no_errors
FAM193A	8603	genome.wustl.edu	36	4	2668058	2668058	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	2668058	2668058	C	T	SNP	C4orf8	NM_003704	human	genbank	54_36p	1	validated	silent	c.2574	p.S858	0.13	NULL	NULL	-	no_errors
ADD1	118	genome.wustl.edu	36	4	2886435	2886435	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	2886435	2886435	C	T	SNP	ADD1	NM_014189	human	genbank	54_36p	1	reviewed	silent	c.1725	p.A575	1	NULL	"superfamily_Aldolase_II_N,HMMPfam_Aldolase_II"	-	no_errors
PCDH7	5099	genome.wustl.edu	36	4	30335169	30335169	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	30335169	30335169	C	T	SNP	PCDH7	NM_032457	human	genbank	54_36p	1	reviewed	silent	c.2886	p.P962	0.99	HMMPfam_Protocadherin	"HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMPfam_Protocadherin"	-	no_errors
HTT	3064	genome.wustl.edu	36	4	3099054	3099054	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	3099054	3099054	G	A	SNP	HTT	NM_002111	human	genbank	54_36p	1	reviewed	silent	c.1668	p.S556	0.62	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
RGS12	6002	genome.wustl.edu	36	4	3289212	3289212	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4	3289212	3289212	C	G	SNP	RGS12	NM_198229	human	genbank	54_36p	1	reviewed	missense	c.1517	p.S506C	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LRPAP1	4043	genome.wustl.edu	36	4	3489580	3489580	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	3489580	3489580	G	T	SNP	LRPAP1	NM_002337	human	genbank	54_36p	-1	validated	missense	c.730	p.Q244K	1	HMMPfam_Alpha-2-MRAP_C	"HMMPfam_Alpha-2-MRAP_N,superfamily_MG_RAP_rcpt_1,HMMPfam_Alpha-2-MRAP_C,PatternScan_ER_TARGET"	-	no_errors
TBC1D1	23216	genome.wustl.edu	36	4	37580520	37580520	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	37580520	37580520	C	T	SNP	TBC1D1	NM_015173	human	genbank	54_36p	1	validated	nonsense	c.409	p.Q137*	1	"superfamily_PH domain-like,HMMSmart_SM00462"	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_LECTIN_LEGUME_BETA,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
TLR1	7096	genome.wustl.edu	36	4	38475422	38475422	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4	38475422	38475422	C	T	SNP	TLR1	NM_003263	human	genbank	54_36p	-1	reviewed	missense	c.1426	p.A476T	0.96	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Outer arm dynein light chain 1,HMMSmart_SM00364,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
TLR6	10333	genome.wustl.edu	36	4	38506378	38506378	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	38506378	38506378	T	C	SNP	TLR6	NM_006068	human	genbank	54_36p	-1	reviewed	missense	c.1112	p.E371G	0.92	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
UBE2K	3093	genome.wustl.edu	36	4	39423776	39423780	+	Frame_Shift_Del	DEL	ACCAA	ACCAA	-	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	ACCAA	ACCAA	ACCAA	-	ACCAA	ACCAA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	39423776	39423780	ACCAA	-	DEL	UBE2K	NM_005339	human	genbank	54_36p	1	reviewed	frame_shift_del	c.167_171	p.Y56fs	1.000:0.998:1.000:1.000:0.991	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con"	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165"	"(deletion:cds_exon[39423767,39423825])"	no_errors
N4BP2	55728	genome.wustl.edu	36	4	39801168	39801168	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	39801168	39801168	G	A	SNP	N4BP2	NM_018177	human	genbank	54_36p	1	reviewed	missense	c.4225	p.V1409I	1	NULL	"superfamily_UBA-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DUF1771,HMMSmart_SM00463,HMMPfam_Smr"	-	no_errors
ABCA11P	79963	genome.wustl.edu	36	4	409943	409943	+	RNA	SNP	T	T	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	409943	409943	T	G	SNP	ABCA11P	NR_002451	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1	-	-	-	pseudogene
PHOX2B	8929	genome.wustl.edu	36	4	41445365	41445365	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	41445365	41445365	G	T	SNP	PHOX2B	NM_003924	human	genbank	54_36p	-1	reviewed	missense	c.20	p.S7Y	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
SLC30A9	10463	genome.wustl.edu	36	4	41714898	41714898	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	41714898	41714898	C	T	SNP	SLC30A9	NM_006345	human	genbank	54_36p	1	validated	silent	c.288	p.G96	0.28	NULL	"superfamily_Putative DNA-binding domain,HMMPfam_Cation_efflux"	-	no_errors
OTOP1	133060	genome.wustl.edu	36	4	4250353	4250353	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	4250353	4250353	C	T	SNP	OTOP1	NM_177998	human	genbank	54_36p	-1	provisional	missense	c.1109	p.R370Q	0.95	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors
GRXCR1	389207	genome.wustl.edu	36	4	42590045	42590045	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	42590045	42590045	T	A	SNP	GRXCR1	NM_001080476	human	genbank	54_36p	1	inferred	missense	c.5	p.L2H	0.89	NULL	"PatternScan_GLUTAREDOXIN_1,superfamily_Thiordxn-like_fd,HMMPfam_Glutaredoxin,superfamily_HSP_DnaJ_cys-rich"	-	no_errors
LYAR	55646	genome.wustl.edu	36	4	4336351	4336351	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	4	4336351	4336351	T	C	SNP	LYAR	NM_017816	human	genbank	54_36p	-1	validated	missense	c.20	p.N7S	1	NULL	HMMPfam_zf-LYAR	-	no_errors
ZBTB49	166793	genome.wustl.edu	36	4	4355335	4355335	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	4355335	4355335	G	C	SNP	ZNF509	NM_145291	human	genbank	54_36p	1	validated	missense	c.871	p.D291H	0.16	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HMX1	3166	genome.wustl.edu	36	4	43601	43601	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	43601	43601	G	A	SNP	HMX1	NM_018942	human	genbank	54_36p	-1	validated	silent	c.372	p.C124	0	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
HMX1	3166	genome.wustl.edu	36	4	43721	43721	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	43721	43721	C	T	SNP	HMX1	NM_018942	human	genbank	54_36p	-1	validated	silent	c.252	p.P84	0	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
GNPDA2	132789	genome.wustl.edu	36	4	44413920	44413920	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	44413920	44413920	T	A	SNP	GNPDA2	NM_138335	human	genbank	54_36p	-1	provisional	nonsense	c.376	p.K126*	0.95	"superfamily_NagB/RpiA/CoA transferase-like,HMMPfam_Glucosamine_iso,PatternScan_GLC_GALNAC_ISOMERASE"	"superfamily_NagB/RpiA/CoA transferase-like,HMMPfam_Glucosamine_iso,PatternScan_GLC_GALNAC_ISOMERASE"	-	no_errors
GABRA2	2555	genome.wustl.edu	36	4	45947281	45947281	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	4	45947281	45947281	G	C	SNP	GABRA2	NM_000807	human	genbank	54_36p	-1	reviewed	missense	c.1157	p.T386S	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
GABRA2	2555	genome.wustl.edu	36	4	46000233	46000233	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	46000233	46000233	C	A	SNP	GABRA2	NM_000807	human	genbank	54_36p	-1	reviewed	splice_site	c.856+1	e7+1	1	-	-	-	no_errors
CORIN	10699	genome.wustl.edu	36	4	47361995	47361995	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	47361995	47361995	G	C	SNP	CORIN	NM_006587	human	genbank	54_36p	-1	reviewed	missense	c.1400	p.P467R	1	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063"	###############################################################################################################################################################################################################################################################	-	no_errors
CNGA1	1259	genome.wustl.edu	36	4	47634201	47634212	+	Frame_Shift_Del	DEL	GACCAGTAAAGG	GACCAGTAAAGG	TA	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GACCAGTAAAGG	GACCAGTAAAGG	GACCAGTAAAGG	TA	GACCAGTAAAGG	GACCAGTAAAGG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	47634201	47634212	GACCAGTAAAGG	TA	DEL	CNGA1	NM_000087	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1067_1056	p.L353fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.979:1.000:1.000:1.000	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	"(deletion:cds_exon[47633195,47634603])"	no_errors
ZNF595	152687	genome.wustl.edu	36	4	49360	49360	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	49360	49360	C	A	SNP	ZNF595	ENST00000339368	human	ensembl	54_36p	1	known	missense	c.41	p.S14Y	0.64	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SCFD2	152579	genome.wustl.edu	36	4	53926373	53926373	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	53926373	53926373	G	A	SNP	SCFD2	NM_152540	human	genbank	54_36p	-1	validated	missense	c.493	p.P165S	0.68	NULL	"superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1"	-	no_errors
SCFD2	152579	genome.wustl.edu	36	4	53926396	53926396	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	53926396	53926396	G	A	SNP	SCFD2	NM_152540	human	genbank	54_36p	-1	validated	missense	c.470	p.P157L	1	NULL	"HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins"	-	no_errors
FIP1L1	81608	genome.wustl.edu	36	4	53951540	53951540	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	53951540	53951540	T	A	SNP	FIP1L1	NM_030917	human	genbank	54_36p	1	reviewed	missense	c.493	p.W165R	1	HMMPfam_Fip1	HMMPfam_Fip1	-	no_errors
PDGFRA	5156	genome.wustl.edu	36	4	54822144	54822144	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	54822144	54822144	T	A	SNP	PDGFRA	NM_006206	human	genbank	54_36p	1	reviewed	missense	c.175	p.Y59N	1	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	###############################################################################################################################################################################################################################################################	-	no_errors
KIT	3815	genome.wustl.edu	36	4	55297711	55297711	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	55297711	55297711	G	A	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	silent	c.2664	p.R888	0.96	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55665901	55665901	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	55665901	55665901	A	T	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	silent	c.1653	p.P551	0.92	NULL	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55675918	55675918	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	55675918	55675918	C	T	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	missense	c.538	p.D180N	1	superfamily_SSF48726	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726"	-	no_errors
CLOCK	9575	genome.wustl.edu	36	4	56004807	56004807	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	56004807	56004807	T	A	SNP	CLOCK	NM_004898	human	genbank	54_36p	-1	reviewed	missense	c.1706	p.Q569L	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086"	-	no_errors
EXOC1	55763	genome.wustl.edu	36	4	56457812	56457812	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	56457812	56457812	T	G	SNP	EXOC1	NM_001024924	human	genbank	54_36p	1	reviewed	missense	c.2126	p.V709G	1	HMMPfam_Sec3	HMMPfam_Sec3	-	no_errors
CEP135	9662	genome.wustl.edu	36	4	56572877	56572877	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	56572877	56572877	G	T	SNP	CEP135	NM_025009	human	genbank	54_36p	1	validated	missense	c.2771	p.R924I	1	superfamily_Prefoldin	superfamily_Prefoldin	-	no_errors
EVC2	132884	genome.wustl.edu	36	4	5678506	5678517	+	In_Frame_Del	DEL	TTCCATTTGGTC	TTCCATTTGGTC	-	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	TTCCATTTGGTC	TTCCATTTGGTC	TTCCATTTGGTC	-	TTCCATTTGGTC	TTCCATTTGGTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	5678506	5678517	TTCCATTTGGTC	-	DEL	EVC2	NM_147127	human	genbank	54_36p	-1	validated	in_frame_del	c.1917_1906	p.DQME636in_frame_del	0.078:0.452:0.767:0.949:0.957:0.961:0.964:0.977:0.974:0.833:0.867:0.874	NULL	NULL	"(deletion:cds_exon[5678377,5678536])"	no_errors
AASDH	132949	genome.wustl.edu	36	4	56899386	56899386	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	56899386	56899386	A	G	SNP	AASDH	NM_181806	human	genbank	54_36p	-1	validated	missense	c.3236	p.I1079T	0.99	superfamily_Quinoprotein alcohol dehydrogenase-like	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_ACP-like,HMMPfam_PP-binding,superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ"	-	no_errors
AASDH	132949	genome.wustl.edu	36	4	56910752	56910752	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	56910752	56910752	C	A	SNP	AASDH	NM_181806	human	genbank	54_36p	-1	validated	missense	c.1922	p.S641I	0	NULL	"HMMPfam_AMP-binding,HMMPfam_PQQ,HMMPfam_PP-binding,superfamily_ACP-like,superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like"	-	no_errors
AASDH	132949	genome.wustl.edu	36	4	56912295	56912295	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	56912295	56912295	G	T	SNP	AASDH	NM_181806	human	genbank	54_36p	-1	validated	missense	c.1662	p.D554E	1	"superfamily_ACP-like,superfamily_Acetyl-CoA synthetase-like"	"HMMPfam_AMP-binding,HMMPfam_PQQ,HMMPfam_PP-binding,superfamily_ACP-like,superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like"	-	no_errors
AASDH	132949	genome.wustl.edu	36	4	56915021	56915021	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	56915021	56915021	G	A	SNP	AASDH	NM_181806	human	genbank	54_36p	-1	validated	nonsense	c.1324	p.R442*	0.97	"HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like"	"HMMPfam_AMP-binding,HMMPfam_PQQ,HMMPfam_PP-binding,superfamily_ACP-like,superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like"	-	no_errors
POLR2B	5431	genome.wustl.edu	36	4	57560554	57560554	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	57560554	57560554	T	A	SNP	POLR2B	NM_000938	human	genbank	54_36p	1	reviewed	missense	c.750	p.S250R	1	"superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2"	###############################################################################################################################################################################################################################################################	-	no_errors
POLR2B	5431	genome.wustl.edu	36	4	57578609	57578609	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	57578609	57578609	A	T	SNP	POLR2B	NM_000938	human	genbank	54_36p	1	reviewed	missense	c.2281	p.T761S	1	"HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase"	###############################################################################################################################################################################################################################################################	-	no_errors
EVC	2121	genome.wustl.edu	36	4	5784250	5784250	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	5784250	5784250	G	T	SNP	EVC	NM_153717	human	genbank	54_36p	1	reviewed	silent	c.582	p.R194	0.04	NULL	NULL	-	no_errors
CRMP1	1400	genome.wustl.edu	36	4	5893964	5893964	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	5893964	5893964	G	A	SNP	CRMP1	NM_001014809	human	genbank	54_36p	-1	reviewed	silent	c.1125	p.A375	0.25	"superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556"	"superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556"	-	no_errors
LPHN3	23284	genome.wustl.edu	36	4	62281453	62281453	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	62281453	62281453	T	A	SNP	LPHN3	NM_015236	human	genbank	54_36p	1	reviewed	missense	c.781	p.S261T	1	"HMMPfam_OLF,HMMSmart_OLF"	"HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_OLF,HMMSmart_HormR,HMMPfam_HRM,superfamily_SSF81321,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin"	-	no_errors
LPHN3	23284	genome.wustl.edu	36	4	62483220	62483220	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	62483220	62483220	C	G	SNP	LPHN3	NM_015236	human	genbank	54_36p	1	reviewed	missense	c.1976	p.T659R	0.53	superfamily_SSF81321	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_HormR,HMMPfam_OLF,HMMSmart_OLF,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF81321"	-	no_errors
LPHN3	23284	genome.wustl.edu	36	4	62495359	62495359	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	62495359	62495359	C	G	SNP	LPHN3	NM_015236	human	genbank	54_36p	1	reviewed	missense	c.2348	p.T783R	1	superfamily_SSF81321	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_HormR,HMMPfam_OLF,HMMSmart_OLF,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF81321"	-	no_errors
LPHN3	23284	genome.wustl.edu	36	4	62496566	62496566	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	62496566	62496566	C	G	SNP	LPHN3	NM_015236	human	genbank	54_36p	1	reviewed	missense	c.2578	p.L860V	0.99	"HMMPfam_GPS,HMMSmart_GPS,superfamily_SSF81321"	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_HormR,HMMPfam_OLF,HMMSmart_OLF,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF81321"	-	no_errors
LOC391656	391656	genome.wustl.edu	36	4	62654107	62654108	+	Nonsense_Mutation	DNP	CT	CT	AA	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	CT	CT	CT	AA	CT	CT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	62654107	62654108	CT	AA	DNP	LOC391656	XM_373027	human	genbank	54_36p	-1	model	nonsense	c.256_255	p.EK86*	1.000:1.000	"superfamily_Ribosomal protein S8,HMMPfam_Ribosomal_S8"	"superfamily_Ribosomal protein S8,HMMPfam_Ribosomal_S8"	-	pseudogene
LOC644556	644556	genome.wustl.edu	36	4	63366880	63366880	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	63366880	63366880	G	A	SNP	LOC644556	XM_001719457	human	genbank	54_36p	1	model	missense	c.814	p.D272N	1	HMMPfam_Sec10	HMMPfam_Sec10	-	no_errors
LOC644578	644578	genome.wustl.edu	36	4	63899106	63899106	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	63899106	63899106	G	A	SNP	LOC644578	XM_927694	human	genbank	54_36p	1	model	missense	c.844	p.E282K	0.98	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715"	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	-	no_errors
EPHA5	2044	genome.wustl.edu	36	4	65925337	65925337	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	65925337	65925337	G	A	SNP	EPHA5	NM_004439	human	genbank	54_36p	-1	reviewed	silent	c.1830	p.C610	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LOC339970	339970	genome.wustl.edu	36	4	68587375	68587375	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	68587375	68587375	G	A	SNP	LOC339970	XR_038239	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
UGT2B17	7367	genome.wustl.edu	36	4	69116210	69116210	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	69116210	69116210	A	G	SNP	UGT2B17	NM_001077	human	genbank	54_36p	-1	provisional	silent	c.588	p.P196	0.96	"superfamily_SSF53756,HMMPfam_UDPGT"	"superfamily_SSF53756,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
KIAA0232	9778	genome.wustl.edu	36	4	6913767	6913767	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	6913767	6913767	A	T	SNP	KIAA0232	NM_001100590	human	genbank	54_36p	1	validated	missense	c.757	p.N253Y	0	NULL	NULL	-	no_errors
UGT2B10	7365	genome.wustl.edu	36	4	69727856	69727856	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	69727856	69727856	G	C	SNP	UGT2B10	NM_001075	human	genbank	54_36p	1	validated	splice_site	c.1307+1	e5+1	1	-	-	-	no_errors
UGT2A3	79799	genome.wustl.edu	36	4	69851681	69851681	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	69851681	69851681	G	C	SNP	UGT2A3	NM_024743	human	genbank	54_36p	-1	validated	missense	c.387	p.I129M	0	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"PatternScan_HMA_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT2B11	10720	genome.wustl.edu	36	4	70114743	70114743	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	70114743	70114743	C	G	SNP	UGT2B11	NM_001073	human	genbank	54_36p	-1	provisional	missense	c.287	p.R96T	0.01	"superfamily_SSF53756,HMMPfam_UDPGT"	"superfamily_SSF53756,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
TBC1D14	57533	genome.wustl.edu	36	4	7046811	7046811	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	7046811	7046811	G	C	SNP	TBC1D14	NM_020773	human	genbank	54_36p	1	validated	splice_site	c.799-1	e3-1	1	-	-	-	no_errors
UGT2A1	10941	genome.wustl.edu	36	4	70499620	70499620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	70499620	70499620	C	T	SNP	UGT2A1	NM_006798	human	genbank	54_36p	-1	validated	missense	c.797	p.R266H	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
HTN3	3347	genome.wustl.edu	36	4	70931083	70931083	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	70931083	70931083	A	T	SNP	HTN3	NM_000200	human	genbank	54_36p	1	reviewed	missense	c.37	p.M13L	0.03	NULL	NULL	-	no_errors
ODAM	54959	genome.wustl.edu	36	4	71100839	71100839	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	71100839	71100839	T	G	SNP	ODAM	NM_017855	human	genbank	54_36p	1	validated	missense	c.460	p.W154G	0.99	NULL	NULL	-	no_errors
CSN3	1448	genome.wustl.edu	36	4	71149395	71149395	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	71149395	71149395	C	A	SNP	CSN3	NM_005212	human	genbank	54_36p	1	validated	missense	c.179	p.T60N	0	HMMPfam_Casein_kappa	HMMPfam_Casein_kappa	-	no_errors
C4orf35	85438	genome.wustl.edu	36	4	71235833	71235833	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	71235833	71235833	C	G	SNP	C4orf35	NM_033122	human	genbank	54_36p	1	validated	missense	c.488	p.S163C	0	NULL	NULL	-	no_errors
C4orf35	85438	genome.wustl.edu	36	4	71236407	71236407	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	71236407	71236407	G	C	SNP	C4orf35	NM_033122	human	genbank	54_36p	1	validated	missense	c.1062	p.K354N	0	NULL	NULL	-	no_errors
MUC7	4589	genome.wustl.edu	36	4	71381416	71381416	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	71381416	71381416	A	G	SNP	MUC7	NM_152291	human	genbank	54_36p	1	reviewed	silent	c.366	p.K122	0	NULL	NULL	-	no_errors
AMBN	258	genome.wustl.edu	36	4	71506708	71506708	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	71506708	71506708	C	A	SNP	AMBN	NM_016519	human	genbank	54_36p	1	reviewed	missense	c.1016	p.P339Q	0.04	"HMMPfam_Amelin,HMMSmart_SM00817"	"HMMPfam_Amelin,HMMSmart_SM00817"	-	no_errors
ENAM	10117	genome.wustl.edu	36	4	71728831	71728831	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	71728831	71728831	C	G	SNP	ENAM	NM_031889	human	genbank	54_36p	1	validated	missense	c.2824	p.Q942E	0.01	NULL	NULL	-	no_errors
DCK	1633	genome.wustl.edu	36	4	72106954	72106954	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	72106954	72106954	A	G	SNP	DCK	NM_000788	human	genbank	54_36p	1	reviewed	missense	c.214	p.T72A	1	superfamily_SSF52540	"superfamily_SSF52540,HMMPfam_dNK"	-	no_errors
SLC4A4	8671	genome.wustl.edu	36	4	72535849	72535849	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	72535849	72535849	A	T	SNP	SLC4A4	NM_001098484	human	genbank	54_36p	1	reviewed	missense	c.1289	p.H430L	1	NULL	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
GC	2638	genome.wustl.edu	36	4	72848437	72848437	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	72848437	72848437	A	G	SNP	GC	NM_000583	human	genbank	54_36p	-1	reviewed	missense	c.554	p.M185T	1	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like,PatternScan_ALBUMIN"	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like,PatternScan_ALBUMIN,HMMPfam_VitD-bind_III"	-	no_errors
NPFFR2	10886	genome.wustl.edu	36	4	73232187	73232187	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	73232187	73232187	T	C	SNP	NPFFR2	NM_004885	human	genbank	54_36p	1	reviewed	missense	c.1363	p.C455R	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ADAMTS3	9508	genome.wustl.edu	36	4	73390622	73390622	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	73390622	73390622	G	C	SNP	ADAMTS3	NM_014243	human	genbank	54_36p	-1	reviewed	missense	c.2206	p.P736A	1	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ANKRD17	26057	genome.wustl.edu	36	4	74169891	74169891	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	74169891	74169891	G	A	SNP	ANKRD17	NM_032217	human	genbank	54_36p	-1	reviewed	silent	c.7098	p.N2366	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_MutS_V,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	-	no_errors
ANKRD17	26057	genome.wustl.edu	36	4	74175270	74175270	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	74175270	74175270	C	G	SNP	ANKRD17	NM_032217	human	genbank	54_36p	-1	reviewed	missense	c.6939	p.Q2313H	1	NULL	"HMMPfam_MutS_V,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
ALB	213	genome.wustl.edu	36	4	74493974	74493974	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	74493974	74493974	A	T	SNP	ALB	NM_000477	human	genbank	54_36p	1	reviewed	missense	c.521	p.Y174F	1	"superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103"	"PatternScan_ALBUMIN,superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103"	-	no_errors
ALB	213	genome.wustl.edu	36	4	74494978	74494978	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	74494978	74494978	C	A	SNP	ALB	NM_000477	human	genbank	54_36p	1	reviewed	missense	c.701	p.A234D	1	"superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103"	"PatternScan_ALBUMIN,superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103"	-	no_errors
AFP	174	genome.wustl.edu	36	4	74529625	74529625	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	74529625	74529625	C	T	SNP	AFP	NM_001134	human	genbank	54_36p	1	reviewed	silent	c.765	p.I255	0.17	"HMMSmart_ALBUMIN,HMMPfam_Serum_albumin,superfamily_Serum_albumin"	"HMMSmart_ALBUMIN,HMMPfam_Serum_albumin,superfamily_Serum_albumin,PatternScan_ALBUMIN"	-	no_errors
IL8	3576	genome.wustl.edu	36	4	74826153	74826153	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	74826153	74826153	T	A	SNP	IL8	NM_000584	human	genbank	54_36p	1	reviewed	missense	c.95	p.L32H	0.99	"HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199"	"HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CXC"	-	no_errors
PPBP	5473	genome.wustl.edu	36	4	75072542	75072542	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	75072542	75072542	C	A	SNP	PPBP	NM_002704	human	genbank	54_36p	-1	reviewed	missense	c.143	p.G48V	0	NULL	"HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CXC"	-	no_errors
PPBP	5473	genome.wustl.edu	36	4	75072567	75072567	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	75072567	75072567	G	T	SNP	PPBP	NM_002704	human	genbank	54_36p	-1	reviewed	missense	c.118	p.Q40K	0.01	NULL	"HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC"	-	no_errors
MTHFD2L	441024	genome.wustl.edu	36	4	75259197	75259197	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	75259197	75259197	G	T	SNP	MTHFD2L	ENST00000325278	human	ensembl	54_36p	1	known	missense	c.80	p.S27I	1	"superfamily_Aminoacid dehydrogenase-like N-terminal domain,HMMPfam_THF_DHG_CYH"	"superfamily_Aminoacid dehydrogenase-like N-terminal domain,HMMPfam_THF_DHG_CYH,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C,PatternScan_THF_DHG_CYH_2"	-	no_errors
PARM1	25849	genome.wustl.edu	36	4	76156925	76156925	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	76156925	76156925	C	G	SNP	DKFZP564O0823	NM_015393	human	genbank	54_36p	1	validated	missense	c.310	p.P104A	0.01	NULL	NULL	-	no_errors
PPEF2	5470	genome.wustl.edu	36	4	77030294	77030294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	77030294	77030294	C	T	SNP	PPEF2	NM_006239	human	genbank	54_36p	-1	reviewed	missense	c.257	p.R86H	1	HMMPfam_PPP5	"HMMPfam_IQ,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE,HMMSmart_SM00054,superfamily_EF-hand,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
NUP54	53371	genome.wustl.edu	36	4	77270860	77270860	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	77270860	77270860	C	T	SNP	NUP54	NM_017426	human	genbank	54_36p	-1	reviewed	missense	c.1029	p.M343I	1	NULL	NULL	-	no_errors
STBD1	8987	genome.wustl.edu	36	4	77449958	77449958	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	77449958	77449958	C	A	SNP	STBD1	NM_003943	human	genbank	54_36p	1	validated	missense	c.858	p.D286E	1	"superfamily_Starch-binding domain-like,HMMPfam_CBM_20"	"superfamily_Starch-binding domain-like,HMMPfam_CBM_20"	-	no_errors
SORCS2	57537	genome.wustl.edu	36	4	7756820	7756820	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	7756820	7756820	G	A	SNP	SORCS2	NM_020777	human	genbank	54_36p	1	reviewed	missense	c.1327	p.G443S	1	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602"	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD"	-	no_errors
SHROOM3	57619	genome.wustl.edu	36	4	77880205	77880214	+	Frame_Shift_Del	DEL	TCTTCCAGGC	TCTTCCAGGC	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	TCTTCCAGGC	TCTTCCAGGC	TCTTCCAGGC	-	TCTTCCAGGC	TCTTCCAGGC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	77880205	77880214	TCTTCCAGGC	-	DEL	SHROOM3	NM_020859	human	genbank	54_36p	1	validated	frame_shift_del	c.1852_1861	p.S619fs	0.000:0.002:0.010:0.013:0.000:0.000:0.000:0.003:0.024:0.021	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2"	"(deletion:cds_exon[77878938,77882103])"	no_errors
CCNG2	901	genome.wustl.edu	36	4	78306068	78306068	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	78306068	78306068	C	T	SNP	CCNG2	NM_004354	human	genbank	54_36p	1	reviewed	silent	c.1002	p.F334	0.97	NULL	"superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_N"	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79377709	79377709	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	79377709	79377709	G	A	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	1	known	missense	c.130	p.D44N	1	"HMMSmart_SM00214,HMMSmart_SM00215"	"HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta"	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79514397	79514397	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	79514397	79514397	A	T	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	1	known	missense	c.3119	p.Y1040F	0.99	"HMMSmart_SM00261,superfamily_Growth factor receptor domain"	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00181,HMMSmart_SM00261,HMMSmart_SM00215,superfamily_Growth factor receptor domain"	-	no_errors
FRAS1	80144	genome.wustl.edu	36	4	79570543	79570543	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	79570543	79570543	G	A	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	1	known	silent	c.4917	p.Q1639	0.35	NULL	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMSmart_SM00181,HMMSmart_SM00261,HMMSmart_SM00215,superfamily_Growth factor receptor domain"	-	no_errors
BMP2K	55589	genome.wustl.edu	36	4	80005746	80005746	+	Missense_Mutation	SNP	C	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	4	80005746	80005746	C	G	SNP	BMP2K	NM_198892	human	genbank	54_36p	1	reviewed	missense	c.1079	p.T360S	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ANTXR2	118429	genome.wustl.edu	36	4	81171861	81171861	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	81171861	81171861	G	A	SNP	ANTXR2	NM_058172	human	genbank	54_36p	-1	reviewed	missense	c.806	p.P269L	0.9	HMMPfam_Anth_Ig	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Anth_Ig,HMMPfam_Ant_C"	-	no_errors
FGF5	2250	genome.wustl.edu	36	4	81407214	81407214	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	81407214	81407214	G	T	SNP	FGF5	NM_004464	human	genbank	54_36p	1	reviewed	missense	c.212	p.G71V	0.67	NULL	"superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
BMP3	651	genome.wustl.edu	36	4	82186049	82186049	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	82186049	82186049	A	G	SNP	BMP3	NM_001201	human	genbank	54_36p	1	reviewed	silent	c.450	p.G150	0.01	NULL	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
HTRA3	94031	genome.wustl.edu	36	4	8356898	8356898	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8356898	8356898	T	G	SNP	HTRA3	NM_053044	human	genbank	54_36p	1	provisional	silent	c.1188	p.P396	1	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	"HMMSmart_SM00121,HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	-	no_errors
LOC442113	442113	genome.wustl.edu	36	4	83721089	83721089	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	83721089	83721089	A	G	SNP	LOC442113	XR_016390	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SCD5	79966	genome.wustl.edu	36	4	83845532	83845532	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	83845532	83845532	C	T	SNP	SCD5	NM_001037582	human	genbank	54_36p	-1	validated	nonsense	c.291	p.W97*	1	HMMPfam_FA_desaturase	"HMMPfam_FA_desaturase,PatternScan_FATTY_ACID_DESATUR_1"	-	no_errors
HPSE	10855	genome.wustl.edu	36	4	84450939	84450939	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	84450939	84450939	C	T	SNP	HPSE	NM_001098540	human	genbank	54_36p	-1	validated	missense	c.802	p.V268I	0.51	"superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_79n"	"superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_79n"	-	no_errors
HELQ	113510	genome.wustl.edu	36	4	84556968	84556968	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	84556968	84556968	G	C	SNP	HELQ	NM_133636	human	genbank	54_36p	-1	validated	silent	c.3138	p.L1046	0.93	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
C4orf23	152992	genome.wustl.edu	36	4	8516628	8516628	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8516628	8516628	C	T	SNP	C4orf23	NM_152544	human	genbank	54_36p	1	predicted	missense	c.44	p.P15L	0.66	HMMPfam_AdoMet_MTase	HMMPfam_AdoMet_MTase	-	no_errors
C4orf23	152992	genome.wustl.edu	36	4	8516718	8516718	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8516718	8516718	G	T	SNP	C4orf23	NM_152544	human	genbank	54_36p	1	predicted	missense	c.134	p.R45M	1	HMMPfam_AdoMet_MTase	HMMPfam_AdoMet_MTase	-	no_errors
LOC152845	152845	genome.wustl.edu	36	4	85385689	85385689	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	85385689	85385689	T	C	SNP	LOC152845	XR_038721	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
GPR78	27201	genome.wustl.edu	36	4	8633792	8633792	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8633792	8633792	C	T	SNP	GPR78	NM_080819	human	genbank	54_36p	1	validated	silent	c.183	p.P61	0.99	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GPR78	27201	genome.wustl.edu	36	4	8635215	8635215	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8635215	8635215	G	T	SNP	GPR78	NM_080819	human	genbank	54_36p	1	validated	missense	c.726	p.K242N	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
CPZ	8532	genome.wustl.edu	36	4	8659894	8659894	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8659894	8659894	G	T	SNP	CPZ	NM_001014447	human	genbank	54_36p	1	reviewed	missense	c.1069	p.V357L	1	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631"	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain"	-	no_errors
CPZ	8532	genome.wustl.edu	36	4	8660021	8660023	+	In_Frame_Del	DEL	AGA	AGA	-	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8660021	8660023	AGA	-	DEL	CPZ	NM_001014447	human	genbank	54_36p	1	reviewed	in_frame_del	c.1196_1198	p.K400in_frame_del	0.997:0.977:0.997	"HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases"	"superfamily_Frizzled cysteine-rich domain,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain,HMMPfam_Fz,HMMSmart_SM00063,superfamily_Zn-dependent exopeptidases"	"(deletion:cds_exon[8659894,8660052])"	no_errors
PTPN13	5783	genome.wustl.edu	36	4	87874919	87874919	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	87874919	87874919	C	T	SNP	PTPN13	NM_080685	human	genbank	54_36p	1	reviewed	missense	c.2018	p.T673I	0.82	"HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPN13	5783	genome.wustl.edu	36	4	87899222	87899222	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	87899222	87899222	C	G	SNP	PTPN13	NM_080685	human	genbank	54_36p	1	reviewed	missense	c.3525	p.I1175M	1	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPN13	5783	genome.wustl.edu	36	4	87949965	87949965	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	87949965	87949965	T	C	SNP	PTPN13	NM_080685	human	genbank	54_36p	1	reviewed	missense	c.7118	p.I2373T	0.57	"HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799"	###############################################################################################################################################################################################################################################################	-	no_errors
SPP1	6696	genome.wustl.edu	36	4	89122812	89122812	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	89122812	89122812	C	A	SNP	SPP1	NM_001040058	human	genbank	54_36p	1	validated	missense	c.685	p.Q229K	0.37	"HMMPfam_Osteopontin,HMMSmart_SM00017"	"HMMPfam_Osteopontin,HMMSmart_SM00017,PatternScan_OSTEOPONTIN"	-	no_errors
HERC5	51191	genome.wustl.edu	36	4	89626399	89626399	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	89626399	89626399	T	C	SNP	HERC5	NM_016323	human	genbank	54_36p	1	reviewed	silent	c.1848	p.T616	0	NULL	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
GPRIN3	285513	genome.wustl.edu	36	4	90388767	90388767	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	90388767	90388767	G	T	SNP	GPRIN3	NM_198281	human	genbank	54_36p	-1	validated	missense	c.1518	p.D506E	0	NULL	NULL	-	no_errors
MMRN1	22915	genome.wustl.edu	36	4	91035171	91035171	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	91035171	91035171	T	C	SNP	MMRN1	NM_007351	human	genbank	54_36p	1	reviewed	missense	c.26	p.L9P	0.57	NULL	"HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q"	-	no_errors
MMRN1	22915	genome.wustl.edu	36	4	91076033	91076033	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	91076033	91076033	G	A	SNP	MMRN1	NM_007351	human	genbank	54_36p	1	reviewed	missense	c.2179	p.G727S	1	NULL	"PatternScan_ASX_HYDROXYL,HMMPfam_C1q,HMMSmart_SM00110,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_TNF-like,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin"	-	no_errors
GRID2	2895	genome.wustl.edu	36	4	94225441	94225441	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	94225441	94225441	G	T	SNP	GRID2	NM_001510	human	genbank	54_36p	1	validated	missense	c.517	p.D173Y	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
SLC2A9	56606	genome.wustl.edu	36	4	9518987	9518987	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	9518987	9518987	C	A	SNP	SLC2A9	NM_020041	human	genbank	54_36p	-1	reviewed	silent	c.1083	p.G361	0.12	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SMARCAD1	56916	genome.wustl.edu	36	4	95374277	95374277	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	95374277	95374277	G	A	SNP	SMARCAD1	NM_020159	human	genbank	54_36p	1	validated	missense	c.518	p.S173N	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
HPGDS	27306	genome.wustl.edu	36	4	95458112	95458112	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	95458112	95458112	A	-	DEL	PGDS	NM_014485	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.161	p.L54fs	1	"superfamily_Thioredoxin-like,HMMPfam_GST_N"	"superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C"	"(deletion:cds_exon[95458047,95458139])"	no_errors
SLC2A9	56606	genome.wustl.edu	36	4	9596452	9596452	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	9596452	9596452	C	T	SNP	SLC2A9	NM_020041	human	genbank	54_36p	-1	reviewed	silent	c.474	p.S158	0	"HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter"	"HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS general substrate transporter"	-	no_errors
WDR1	9948	genome.wustl.edu	36	4	9688109	9688109	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	9688109	9688109	T	C	SNP	WDR1	NM_017491	human	genbank	54_36p	-1	reviewed	missense	c.1631	p.N544S	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LOC642424	642424	genome.wustl.edu	36	10	42000954	42000954	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42000954	42000954	G	C	SNP	LOC642424	XM_001717196	human	genbank	54_36p	1	model	missense	c.413	p.R138T	0.84	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_errors
ENSG00000186223	0	genome.wustl.edu	36	11	4220394	4220394	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	4220394	4220394	C	A	SNP	ENSG00000186223	ENST00000334071	human	ensembl	54_36p	-1	known	missense	c.53	p.R18M	1	"superfamily_Tyr_Pase_low_mol_wt,HMMPfam_Ssu72"	"superfamily_Tyr_Pase_low_mol_wt,HMMPfam_Ssu72"	-	no_errors
LOC100129622	100129622	genome.wustl.edu	36	10	42552611	42552611	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	42552611	42552611	G	A	SNP	LOC100129622	XM_001724175	human	genbank	54_36p	1	model	splice_site	c.463+1	e4+1	1	-	-	-	pseudogene
FAM183A	440585	genome.wustl.edu	36	1	43391135	43391135	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	43391135	43391135	G	T	SNP	FAM183A	NM_001101376	human	genbank	54_36p	1	validated	missense	c.243	p.K81N	1	NULL	NULL	-	no_errors
CYP2A7P1	1550	genome.wustl.edu	36	19	46224893	46224893	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46224893	46224893	G	A	SNP	CYP2A7P1	ENST00000301171	human	ensembl	54_36p	-1	known	silent	c.297	p.S99	0.42	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450"	-	no_stop_codon
CYP2A7P1	1550	genome.wustl.edu	36	19	46224937	46224937	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46224937	46224937	C	T	SNP	CYP2A7P1	ENST00000301171	human	ensembl	54_36p	-1	known	missense	c.253	p.D85N	0.79	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450"	-	no_stop_codon
CYP2A7P1	1550	genome.wustl.edu	36	19	46225384	46225384	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	46225384	46225384	C	T	SNP	CYP2A7P1	ENST00000301171	human	ensembl	54_36p	-1	known	silent	c.84	p.K28	0.01	NULL	"HMMPfam_p450,superfamily_Cytochrome_P450"	-	no_stop_codon
FAM35B	414241	genome.wustl.edu	36	10	46347869	46347869	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	46347869	46347869	A	C	SNP	FAM35B	ENST00000301038	human	ensembl	54_36p	1	known	missense	c.382	p.S128R	0.67	NULL	NULL	-	no_errors
FAM35B2	439965	genome.wustl.edu	36	10	46836889	46836889	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	46836889	46836889	G	C	SNP	FAM35B2	ENST00000342900	human	ensembl	54_36p	1	known	missense	c.1381	p.D461H	0.4	NULL	NULL	-	no_start_codon
MIR7-3	407045	genome.wustl.edu	36	19	4721690	4721690	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	4721690	4721690	G	C	SNP	MIRN7-3	ENST00000384898	human	ensembl	54_36p	1	known	rna	NULL	NULL	0	-	-	-	no_errors
OR4C2P	119750	genome.wustl.edu	36	11	48398865	48398865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	48398865	48398865	C	T	SNP	OR4C2P	ENST00000330155	human	ensembl	54_36p	1	known	missense	c.494	p.P165L	0.68	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
ENSG00000202582	0	genome.wustl.edu	36	12	48558661	48558661	+	Missense_Mutation	SNP	T	C	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	C	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	12	48558661	48558661	T	C	SNP	ENSG00000202582	ENST00000380242	human	ensembl	54_36p	-1	known	missense	c.341	p.Y114C	0	NULL	NULL	-	no_errors
ENSG00000205035	0	genome.wustl.edu	36	11	49554657	49554657	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49554657	49554657	T	A	SNP	ENSG00000205035	ENST00000357667	human	ensembl	54_36p	1	novel	missense	c.284	p.I95K	1	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	-	no_start_codon:no_stop_codon
ENSG00000205035	0	genome.wustl.edu	36	11	49554660	49554660	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	49554660	49554660	G	A	SNP	ENSG00000205035	ENST00000357667	human	ensembl	54_36p	1	novel	missense	c.287	p.R96K	1	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	-	no_start_codon:no_stop_codon
CAMK4	814	genome.wustl.edu	36	5	110758356	110758356	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	110758356	110758356	A	G	SNP	CAMK4	NM_001744	human	genbank	54_36p	1	reviewed	missense	c.436	p.K146E	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SNORA13	654322	genome.wustl.edu	36	5	111525088	111525088	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	111525088	111525088	G	C	SNP	SNORA13	NR_002922	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	no_errors
APC	324	genome.wustl.edu	36	5	112202549	112202549	+	Missense_Mutation	SNP	G	G	A	rs28933379	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	112202549	112202549	G	A	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.3359	p.G1120E	1	NULL	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding"	-	no_errors
APC	324	genome.wustl.edu	36	5	112205204	112205204	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	112205204	112205204	C	G	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	nonsense	c.6014	p.S2005*	0.66	NULL	"HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat"	-	no_errors
TSSK1B	83942	genome.wustl.edu	36	5	112797869	112797869	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	112797869	112797869	G	A	SNP	TSSK1B	NM_032028	human	genbank	54_36p	-1	provisional	silent	c.567	p.G189	0.74	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CTNND2	1501	genome.wustl.edu	36	5	11450167	11450167	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	11450167	11450167	T	C	SNP	CTNND2	NM_001332	human	genbank	54_36p	-1	validated	silent	c.588	p.R196	1	NULL	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
FEM1C	56929	genome.wustl.edu	36	5	114906776	114906776	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	114906776	114906776	T	C	SNP	FEM1C	NM_020177	human	genbank	54_36p	-1	validated	missense	c.314	p.H105R	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
LVRN	206338	genome.wustl.edu	36	5	115326342	115326342	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	115326342	115326342	C	T	SNP	LVRN	NM_173800	human	genbank	54_36p	1	validated	silent	c.129	p.V43	0.03	NULL	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
LVRN	206338	genome.wustl.edu	36	5	115351451	115351451	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	115351451	115351451	G	T	SNP	LVRN	NM_173800	human	genbank	54_36p	1	validated	missense	c.1021	p.A341S	0.72	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (zincins) catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors
LVRN	206338	genome.wustl.edu	36	5	115364028	115364028	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	115364028	115364028	G	C	SNP	LVRN	NM_173800	human	genbank	54_36p	1	validated	splice_site	c.1516-1	e8-1	1	-	-	-	no_errors
COMMD10	51397	genome.wustl.edu	36	5	115456227	115456227	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	115456227	115456227	C	T	SNP	COMMD10	NM_016144	human	genbank	54_36p	1	provisional	silent	c.330	p.V110	0.5	HMMPfam_HCaRG	HMMPfam_HCaRG	-	no_errors
SEMA6A	57556	genome.wustl.edu	36	5	115855347	115855347	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	115855347	115855347	C	T	SNP	SEMA6A	NM_020796	human	genbank	54_36p	-1	validated	missense	c.523	p.A175T	1	"superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema"	"superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,HMMPfam_PSI,superfamily_Plexin repeat,HMMSmart_SM00423"	-	no_errors
SEMA6A	57556	genome.wustl.edu	36	5	115868492	115868492	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	115868492	115868492	A	C	SNP	SEMA6A	NM_020796	human	genbank	54_36p	-1	validated	silent	c.48	p.A16	1	NULL	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat"	-	no_errors
DMXL1	1657	genome.wustl.edu	36	5	118513074	118513074	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	118513074	118513074	C	G	SNP	DMXL1	NM_005509	human	genbank	54_36p	1	validated	missense	c.3653	p.S1218C	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_SUBTILASE_ASP,PatternScan_WD_REPEATS_1"	-	no_errors
ZNF608	57507	genome.wustl.edu	36	5	124011782	124011782	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	124011782	124011782	G	C	SNP	ZNF608	NM_020747	human	genbank	54_36p	-1	validated	missense	c.2194	p.L732V	0.99	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF608	57507	genome.wustl.edu	36	5	124012207	124012207	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	124012207	124012207	T	A	SNP	ZNF608	NM_020747	human	genbank	54_36p	-1	validated	missense	c.1769	p.D590V	1	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MEGF10	84466	genome.wustl.edu	36	5	126760282	126760282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	126760282	126760282	G	C	SNP	MEGF10	NM_032446	human	genbank	54_36p	1	validated	missense	c.572	p.C191S	1	"HMMSmart_SM00180,HMMPfam_Laminin_EGF,superfamily_EGF/Laminin,HMMSmart_SM00181"	"HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00180,HMMPfam_Laminin_EGF,HMMPfam_EGF_2,superfamily_Plant inhibitors of proteinases and amylases"	-	no_errors
MEGF10	84466	genome.wustl.edu	36	5	126786259	126786259	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	126786259	126786259	A	T	SNP	MEGF10	NM_032446	human	genbank	54_36p	1	validated	splice_site	c.1591-2	e12-2	1	-	-	-	no_errors
MEGF10	84466	genome.wustl.edu	36	5	126820869	126820869	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	126820869	126820869	G	C	SNP	MEGF10	NM_032446	human	genbank	54_36p	1	validated	missense	c.3383	p.S1128T	0.01	NULL	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,superfamily_Plant inhibitors of proteinases and amylases,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin"	-	no_errors
SLC12A2	6558	genome.wustl.edu	36	5	127512432	127512432	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	127512432	127512432	T	G	SNP	SLC12A2	NM_001046	human	genbank	54_36p	1	validated	missense	c.1969	p.L657V	1	HMMPfam_AA_permease	"HMMPfam_AA_permease_N,HMMPfam_AA_permease"	-	no_errors
SLC12A2	6558	genome.wustl.edu	36	5	127514866	127514866	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	127514866	127514866	G	T	SNP	SLC12A2	NM_001046	human	genbank	54_36p	1	validated	missense	c.2142	p.W714C	1	HMMPfam_AA_permease	"HMMPfam_AA_permease,HMMPfam_AA_permease_N"	-	no_errors
FBN2	2201	genome.wustl.edu	36	5	127698789	127698789	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	127698789	127698789	C	T	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	missense	c.3945	p.M1315I	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN2	2201	genome.wustl.edu	36	5	127709144	127709144	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	127709144	127709144	C	A	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	missense	c.3021	p.W1007C	1	"superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN2	2201	genome.wustl.edu	36	5	127882885	127882885	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	127882885	127882885	G	T	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	missense	c.608	p.T203N	1	"HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAMTS19	171019	genome.wustl.edu	36	5	129065169	129065169	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	129065169	129065169	G	A	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	1	reviewed	silent	c.3126	p.A1042	0.62	"superfamily_TSP-1 type 1 repeat,HMMPfam_TSP_1,HMMSmart_SM00209"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
FNIP1	96459	genome.wustl.edu	36	5	131042725	131042725	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	131042725	131042725	T	G	SNP	FNIP1	NM_133372	human	genbank	54_36p	-1	validated	missense	c.1245	p.E415D	1	NULL	NULL	-	no_errors
IL3	3562	genome.wustl.edu	36	5	131426144	131426144	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	131426144	131426144	C	A	SNP	IL3	NM_000588	human	genbank	54_36p	1	reviewed	silent	c.321	p.A107	0	"HMMPfam_IL3,superfamily_4_helix_cytokine"	"HMMPfam_IL3,superfamily_4_helix_cytokine"	-	no_errors
PDLIM4	8572	genome.wustl.edu	36	5	131635725	131635725	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	131635725	131635725	G	A	SNP	PDLIM4	NM_003687	human	genbank	54_36p	1	validated	silent	c.897	p.R299	0.99	"HMMSmart_SM00132,HMMPfam_LIM"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
IL13	3596	genome.wustl.edu	36	5	132021929	132021929	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	132021929	132021929	T	G	SNP	IL13	NM_002188	human	genbank	54_36p	1	reviewed	missense	c.152	p.V51G	0.03	"HMMPfam_IL13,HMMSmart_SM00190,superfamily_4-helical cytokines,PatternScan_INTERLEUKIN_4_13"	"HMMPfam_IL13,HMMSmart_SM00190,superfamily_4-helical cytokines,PatternScan_INTERLEUKIN_4_13"	-	no_errors
SEPT8	23176	genome.wustl.edu	36	5	132126087	132126087	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	132126087	132126087	G	A	SNP	SEPT8	NM_001098811	human	genbank	54_36p	-1	validated	silent	c.684	p.N228	0.98	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin"	-	no_errors
TERT	7015	genome.wustl.edu	36	5	1333401	1333401	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	1333401	1333401	G	T	SNP	TERT	NM_198253	human	genbank	54_36p	-1	reviewed	missense	c.1822	p.Q608K	0	superfamily_DNA/RNA polymerases	superfamily_DNA/RNA polymerases	-	no_errors
PPP2CA	5515	genome.wustl.edu	36	5	133565562	133565562	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	133565562	133565562	C	G	SNP	PPP2CA	NM_002715	human	genbank	54_36p	-1	reviewed	missense	c.362	p.R121T	1	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos"	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE"	-	no_errors
LECT2	3950	genome.wustl.edu	36	5	135314874	135314874	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	135314874	135314874	C	G	SNP	LECT2	NM_002302	human	genbank	54_36p	-1	reviewed	missense	c.226	p.G76R	0.22	HMMPfam_Peptidase_M23	HMMPfam_Peptidase_M23	-	no_errors
TRPC7	57113	genome.wustl.edu	36	5	135720346	135720346	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	135720346	135720346	T	A	SNP	TRPC7	ENST00000265193	human	ensembl	54_36p	-1	known	missense	c.626	p.D209V	1	HMMPfam_TRP_2	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans"	-	no_errors
SPOCK1	6695	genome.wustl.edu	36	5	136356177	136356177	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	136356177	136356177	T	G	SNP	SPOCK1	NM_004598	human	genbank	54_36p	-1	reviewed	missense	c.601	p.K201Q	1	"HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473"	"superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2,HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473,superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY"	-	no_errors
WNT8A	7478	genome.wustl.edu	36	5	137447842	137447842	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	137447842	137447842	G	C	SNP	WNT8A	NM_058244	human	genbank	54_36p	1	reviewed	missense	c.73	p.V25L	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
GFRA3	2676	genome.wustl.edu	36	5	137621427	137621427	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	137621427	137621427	G	C	SNP	GFRA3	NM_001496	human	genbank	54_36p	-1	reviewed	silent	c.585	p.V195	0	HMMPfam_GDNF	"superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF"	-	no_errors
FAM53C	51307	genome.wustl.edu	36	5	137710460	137710460	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	137710460	137710460	G	T	SNP	FAM53C	NM_016605	human	genbank	54_36p	1	validated	silent	c.1092	p.V364	0.99	NULL	NULL	-	no_errors
KDM3B	51780	genome.wustl.edu	36	5	137755843	137755843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	137755843	137755843	C	A	SNP	JMJD1B	NM_016604	human	genbank	54_36p	1	validated	missense	c.2623	p.L875M	0.99	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
EGR1	1958	genome.wustl.edu	36	5	137830996	137830996	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	137830996	137830996	G	A	SNP	EGR1	NM_001964	human	genbank	54_36p	1	reviewed	missense	c.959	p.R320H	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ETF1	2107	genome.wustl.edu	36	5	137881173	137881173	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	137881173	137881173	C	G	SNP	ETF1	NM_004730	human	genbank	54_36p	-1	validated	missense	c.378	p.L126F	1	"superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1,HMMPfam_eRF1_1"	"superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1,HMMPfam_eRF1_1,superfamily_Translational machinery components,HMMPfam_eRF1_2,superfamily_L30e-like,HMMPfam_eRF1_3"	-	no_errors
CTNNA1	1495	genome.wustl.edu	36	5	138146834	138146834	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	138146834	138146834	C	T	SNP	CTNNA1	NM_001903	human	genbank	54_36p	1	validated	missense	c.175	p.H59Y	1	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin"	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin,PatternScan_VINCULIN_1"	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13822720	13822720	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	13822720	13822720	T	G	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.9610	p.N3204H	1	superfamily_SSF52540	"HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13860741	13860741	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	13860741	13860741	T	C	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.7846	p.S2616G	1	"HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540"	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
MATR3	9782	genome.wustl.edu	36	5	138671722	138671722	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	138671722	138671722	C	G	SNP	MATR3	NM_018834	human	genbank	54_36p	1	reviewed	missense	c.719	p.S240W	1	NULL	"HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13903804	13903804	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	13903804	13903804	G	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.5071	p.H1691N	1	HMMPfam_DHC_N2	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13917743	13917743	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	13917743	13917743	A	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	nonsense	c.4359	p.C1453*	1	HMMPfam_DHC_N2	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
PSD2	84249	genome.wustl.edu	36	5	139196765	139196765	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	139196765	139196765	A	G	SNP	PSD2	NM_032289	human	genbank	54_36p	1	provisional	missense	c.1589	p.K530R	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
DNAH5	1767	genome.wustl.edu	36	5	13947789	13947789	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	13947789	13947789	C	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.2401	p.A801T	0	HMMPfam_DHC_N1	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	36	5	139795972	139795972	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	139795972	139795972	C	T	SNP	ANKHD1-EIF4EBP3	NM_020690	human	genbank	54_36p	1	reviewed	missense	c.406	p.R136C	1	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1"	-	no_errors
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	36	5	139883903	139883903	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	139883903	139883903	G	A	SNP	ANKHD1-EIF4EBP3	NM_020690	human	genbank	54_36p	1	reviewed	silent	c.4386	p.K1462	1	NULL	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791"	-	no_errors
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	36	5	139897277	139897277	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	139897277	139897277	G	A	SNP	ANKHD1-EIF4EBP3	NM_020690	human	genbank	54_36p	1	reviewed	missense	c.7147	p.A2383T	1	NULL	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791"	-	no_errors
EIF4EBP3	8637	genome.wustl.edu	36	5	139908732	139908732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	139908732	139908732	C	T	SNP	EIF4EBP3	NM_003732	human	genbank	54_36p	1	reviewed	missense	c.161	p.A54V	1	HMMPfam_eIF_4EBP	HMMPfam_eIF_4EBP	-	no_errors
PCDHA2	56146	genome.wustl.edu	36	5	140154755	140154755	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140154755	140154755	G	C	SNP	PCDHA2	NM_018905	human	genbank	54_36p	1	reviewed	missense	c.22	p.G8R	0.05	NULL	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA2	56146	genome.wustl.edu	36	5	140156603	140156603	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140156603	140156603	G	A	SNP	PCDHA2	NM_018905	human	genbank	54_36p	1	reviewed	missense	c.1870	p.V624M	0.91	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA3	56145	genome.wustl.edu	36	5	140161156	140161156	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140161156	140161156	T	C	SNP	PCDHA3	NM_018906	human	genbank	54_36p	1	reviewed	missense	c.190	p.F64L	0.95	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA3	56145	genome.wustl.edu	36	5	140161602	140161602	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140161602	140161602	A	G	SNP	PCDHA3	NM_018906	human	genbank	54_36p	1	reviewed	missense	c.636	p.I212M	0.62	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA3	56145	genome.wustl.edu	36	5	140162322	140162322	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140162322	140162322	G	A	SNP	PCDHA3	NM_018906	human	genbank	54_36p	1	reviewed	silent	c.1356	p.A452	0.85	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA3	56145	genome.wustl.edu	36	5	140162580	140162580	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140162580	140162580	C	T	SNP	PCDHA3	NM_018906	human	genbank	54_36p	1	reviewed	silent	c.1614	p.R538	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA4	56144	genome.wustl.edu	36	5	140169017	140169017	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140169017	140169017	G	C	SNP	PCDHA4	NM_018907	human	genbank	54_36p	1	reviewed	silent	c.2061	p.V687	0	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA5	56143	genome.wustl.edu	36	5	140182735	140182735	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140182735	140182735	G	A	SNP	PCDHA5	NM_018908	human	genbank	54_36p	1	reviewed	silent	c.1191	p.V397	0.88	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA7	56141	genome.wustl.edu	36	5	140195559	140195559	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140195559	140195559	G	A	SNP	PCDHA7	NM_018910	human	genbank	54_36p	1	reviewed	silent	c.1407	p.P469	0.58	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA9	9752	genome.wustl.edu	36	5	140208366	140208366	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140208366	140208366	C	T	SNP	PCDHA9	NM_031857	human	genbank	54_36p	1	reviewed	silent	c.102	p.S34	0.22	"superfamily_Cadherin-like,HMMPfam_Cadherin_2"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA10	56139	genome.wustl.edu	36	5	140217927	140217927	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140217927	140217927	G	A	SNP	PCDHA10	NM_018901	human	genbank	54_36p	1	reviewed	missense	c.2110	p.A704T	1	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA11	56138	genome.wustl.edu	36	5	140230045	140230045	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140230045	140230045	C	G	SNP	PCDHA11	NM_018902	human	genbank	54_36p	1	reviewed	missense	c.1173	p.H391Q	0	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB7	56129	genome.wustl.edu	36	5	140534337	140534337	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140534337	140534337	G	A	SNP	PCDHB7	NM_018940	human	genbank	54_36p	1	reviewed	silent	c.1737	p.A579	0.01	superfamily_Cadherin-like	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112"	-	no_errors
PCDHB16	57717	genome.wustl.edu	36	5	140542825	140542825	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140542825	140542825	C	T	SNP	PCDHB16	NM_020957	human	genbank	54_36p	1	reviewed	silent	c.507	p.N169	0.02	"superfamily_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMSmart_CA,HMMPfam_Cadherin"	-	no_errors
PCDHB9	56127	genome.wustl.edu	36	5	140547554	140547554	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140547554	140547554	C	A	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	missense	c.478	p.P160T	0.25	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PCDHB9	56127	genome.wustl.edu	36	5	140548416	140548416	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140548416	140548416	C	T	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	missense	c.1340	p.T447M	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PCDHB9	56127	genome.wustl.edu	36	5	140548599	140548599	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140548599	140548599	G	C	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	missense	c.1523	p.R508P	0	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PCDHB9	56127	genome.wustl.edu	36	5	140549022	140549022	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	140549022	140549022	G	A	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	missense	c.1946	p.S649N	0.48	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PCDHB10	56126	genome.wustl.edu	36	5	140554683	140554683	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140554683	140554683	C	T	SNP	PCDHB10	NM_018930	human	genbank	54_36p	1	reviewed	nonsense	c.2374	p.R792*	0	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDHB11	56125	genome.wustl.edu	36	5	140560621	140560621	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140560621	140560621	G	A	SNP	PCDHB11	NM_018931	human	genbank	54_36p	1	reviewed	missense	c.1090	p.V364M	0	"superfamily_Cadherin,HMMPfam_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB12	56124	genome.wustl.edu	36	5	140568714	140568714	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	140568714	140568714	C	G	SNP	PCDHB12	NM_018932	human	genbank	54_36p	1	reviewed	missense	c.51	p.F17L	0	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB12	56124	genome.wustl.edu	36	5	140570694	140570694	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	140570694	140570694	C	T	SNP	PCDHB12	NM_018932	human	genbank	54_36p	1	reviewed	silent	c.2031	p.A677	0	NULL	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB13	56123	genome.wustl.edu	36	5	140576064	140576064	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	140576064	140576064	G	A	SNP	PCDHB13	NM_018933	human	genbank	54_36p	1	reviewed	missense	c.2185	p.E729K	0	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB18	54660	genome.wustl.edu	36	5	140595205	140595205	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140595205	140595205	G	A	SNP	PCDHB18	ENST00000274705	human	ensembl	54_36p	1	known	missense	c.736	p.E246K	0.99	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDHB15	56121	genome.wustl.edu	36	5	140606896	140606896	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140606896	140606896	G	C	SNP	PCDHB15	NM_018935	human	genbank	54_36p	1	reviewed	missense	c.1566	p.E522D	0.26	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
SLC25A2	83884	genome.wustl.edu	36	5	140663501	140663501	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140663501	140663501	G	A	SNP	SLC25A2	NM_031947	human	genbank	54_36p	-1	reviewed	missense	c.116	p.T39M	1	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	-	no_errors
PCDHGA1	56114	genome.wustl.edu	36	5	140692346	140692346	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140692346	140692346	G	A	SNP	PCDHGA1	NM_018912	human	genbank	54_36p	1	reviewed	silent	c.1911	p.A637	0	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA5	56110	genome.wustl.edu	36	5	140725485	140725485	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140725485	140725485	T	G	SNP	PCDHGA5	NM_018918	human	genbank	54_36p	1	reviewed	silent	c.1404	p.G468	0.18	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA5	56110	genome.wustl.edu	36	5	140725975	140725975	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140725975	140725975	C	A	SNP	PCDHGA5	NM_018918	human	genbank	54_36p	1	reviewed	missense	c.1894	p.L632M	0.18	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGA5	56110	genome.wustl.edu	36	5	140726341	140726341	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140726341	140726341	T	G	SNP	PCDHGA5	NM_018918	human	genbank	54_36p	1	reviewed	missense	c.2260	p.S754A	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGA5	56110	genome.wustl.edu	36	5	140726494	140726494	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140726494	140726494	C	T	SNP	PCDHGA5	NM_018918	human	genbank	54_36p	1	reviewed	nonsense	c.2413	p.R805*	0	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGB4	8641	genome.wustl.edu	36	5	140749075	140749075	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140749075	140749075	G	T	SNP	PCDHGB4	NM_003736	human	genbank	54_36p	1	reviewed	silent	c.1440	p.G480	0	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGB6	56100	genome.wustl.edu	36	5	140769297	140769297	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140769297	140769297	C	T	SNP	PCDHGB6	NM_018926	human	genbank	54_36p	1	reviewed	silent	c.1344	p.N448	0.07	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA12	26025	genome.wustl.edu	36	5	140790893	140790893	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140790893	140790893	A	G	SNP	PCDHGA12	NM_003735	human	genbank	54_36p	1	reviewed	missense	c.383	p.D128G	1	"superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGC4	56098	genome.wustl.edu	36	5	140845157	140845157	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140845157	140845157	A	T	SNP	PCDHGC4	NM_018928	human	genbank	54_36p	1	reviewed	missense	c.233	p.D78V	1	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGC5	56097	genome.wustl.edu	36	5	140849910	140849910	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140849910	140849910	C	A	SNP	PCDHGC5	NM_018929	human	genbank	54_36p	1	reviewed	missense	c.919	p.P307T	0.54	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGC5	56097	genome.wustl.edu	36	5	140870809	140870809	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140870809	140870809	T	G	SNP	PCDHGC5	NM_018929	human	genbank	54_36p	1	reviewed	missense	c.2720	p.V907G	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
HDAC3	8841	genome.wustl.edu	36	5	140989008	140989008	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	140989008	140989008	C	G	SNP	HDAC3	NM_003883	human	genbank	54_36p	-1	reviewed	missense	c.526	p.G176R	1	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	-	no_errors
HDAC3	8841	genome.wustl.edu	36	5	140989610	140989610	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	140989610	140989610	C	A	SNP	HDAC3	NM_003883	human	genbank	54_36p	-1	reviewed	splice_site	c.420+1	e5+1	1	-	-	-	no_errors
PCDH1	5097	genome.wustl.edu	36	5	141223560	141223560	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	141223560	141223560	C	G	SNP	PCDH1	NM_032420	human	genbank	54_36p	-1	reviewed	silent	c.2520	p.G840	1	HMMPfam_Protocadherin	"superfamily_Cadherin,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_GREAB_2,HMMPfam_Protocadherin"	-	no_errors
PCDH1	5097	genome.wustl.edu	36	5	141223846	141223846	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	141223846	141223846	T	A	SNP	PCDH1	NM_032420	human	genbank	54_36p	-1	reviewed	missense	c.2234	p.D745V	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin,PatternScan_GREAB_2"	-	no_errors
PCDH1	5097	genome.wustl.edu	36	5	141224972	141224972	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	141224972	141224972	G	A	SNP	PCDH1	NM_032420	human	genbank	54_36p	-1	reviewed	missense	c.1108	p.R370C	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin,PatternScan_GREAB_2"	-	no_errors
PCDH12	51294	genome.wustl.edu	36	5	141311244	141311244	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	141311244	141311244	G	A	SNP	PCDH12	NM_016580	human	genbank	54_36p	-1	reviewed	silent	c.2976	p.S992	1	NULL	"superfamily_Cadherin,HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
SPRY4	81848	genome.wustl.edu	36	5	141674769	141674769	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	141674769	141674769	C	A	SNP	SPRY4	NM_030964	human	genbank	54_36p	-1	validated	missense	c.158	p.R53L	1	NULL	HMMPfam_Sprouty	-	no_errors
YIPF5	81555	genome.wustl.edu	36	5	143520217	143520225	+	In_Frame_Del	DEL	TTGCTGTCC	TTGCTGTCC	-	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	TTGCTGTCC	TTGCTGTCC	TTGCTGTCC	-	TTGCTGTCC	TTGCTGTCC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	143520217	143520225	TTGCTGTCC	-	DEL	YIPF5	NM_001024947	human	genbank	54_36p	-1	validated	in_frame_del	c.711_703	p.GQQ235in_frame_del	0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Yip1	HMMPfam_Yip1	"(deletion:cds_exon[143520154,143520316])"	no_errors
SH3RF2	153769	genome.wustl.edu	36	5	145422254	145422254	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	145422254	145422254	G	A	SNP	SH3RF2	NM_152550	human	genbank	54_36p	1	validated	missense	c.1987	p.G663R	0.64	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_SH3_1"	-	no_errors
PPP2R2B	5521	genome.wustl.edu	36	5	145949851	145949851	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	145949851	145949851	A	C	SNP	PPP2R2B	NM_181676	human	genbank	54_36p	-1	reviewed	missense	c.1193	p.V398G	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2,PatternScan_WD_REPEATS_1"	-	no_errors
SLC6A3	6531	genome.wustl.edu	36	5	1462901	1462901	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	1462901	1462901	G	C	SNP	SLC6A3	NM_001044	human	genbank	54_36p	-1	validated	missense	c.1333	p.R445G	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
FAM105A	54491	genome.wustl.edu	36	5	14662106	14662106	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	14662106	14662106	G	A	SNP	FAM105A	NM_019018	human	genbank	54_36p	1	validated	missense	c.877	p.D293N	0.92	NULL	NULL	-	no_errors
SPINK5	11005	genome.wustl.edu	36	5	147491087	147491087	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	147491087	147491087	G	C	SNP	SPINK5	NM_006846	human	genbank	54_36p	1	reviewed	missense	c.3037	p.V1013L	1	"superfamily_SSF100895,HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_KAZAL"	"superfamily_SSF100895,HMMPfam_Kazal_2,HMMSmart_KAZAL,PatternScan_KAZAL,HMMPfam_Kazal_1"	-	no_errors
SPINK6	404203	genome.wustl.edu	36	5	147573674	147573674	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	147573674	147573674	T	C	SNP	SPINK6	NM_205841	human	genbank	54_36p	1	validated	silent	c.90	p.C30	0.42	"superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1"	"superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1,PatternScan_KAZAL"	-	no_errors
FBXO38	81545	genome.wustl.edu	36	5	147800984	147800984	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	147800984	147800984	G	A	SNP	FBXO38	NM_205836	human	genbank	54_36p	1	validated	missense	c.3379	p.D1127N	1	NULL	"superfamily_F-box domain,HMMPfam_F-box,superfamily_RNI-like"	-	no_errors
ADRB2	154	genome.wustl.edu	36	5	148187638	148187638	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	148187638	148187638	G	-	DEL	ADRB2	NM_000024	human	genbank	54_36p	1	validated	frame_shift_del	c.1051	p.N352fs	0.17	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[148186588,148187829])"	no_errors
SH3TC2	79628	genome.wustl.edu	36	5	148372410	148372410	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	148372410	148372410	T	A	SNP	SH3TC2	NM_024577	human	genbank	54_36p	-1	reviewed	missense	c.3134	p.E1045V	1	"superfamily_TPR-like,HMMSmart_SM00028"	"superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_SH3_1,HMMSmart_SM00326,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
GRPEL2	134266	genome.wustl.edu	36	5	148708089	148708089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	148708089	148708089	G	C	SNP	GRPEL2	NM_152407	human	genbank	54_36p	1	validated	missense	c.139	p.E47Q	1	HMMPfam_GrpE	"HMMPfam_GrpE,superfamily_GrpE_head,PatternScan_GRPE"	-	no_errors
LOC644762	644762	genome.wustl.edu	36	5	149292102	149292102	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	149292102	149292102	T	C	SNP	LOC644762	XR_017570	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	no_errors
PDE6A	5145	genome.wustl.edu	36	5	149304423	149304423	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	149304423	149304423	C	A	SNP	PDE6A	NM_000440	human	genbank	54_36p	-1	reviewed	nonsense	c.7	p.E3*	1	NULL	"superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
TIGD6	81789	genome.wustl.edu	36	5	149354791	149354791	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	149354791	149354791	G	A	SNP	TIGD6	NM_030953	human	genbank	54_36p	-1	validated	silent	c.1314	p.D438	0.03	NULL	"HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE"	-	no_errors
SLC6A3	6531	genome.wustl.edu	36	5	1494479	1494479	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	1494479	1494479	A	C	SNP	SLC6A3	NM_001044	human	genbank	54_36p	-1	validated	missense	c.413	p.L138R	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
PDGFRB	5159	genome.wustl.edu	36	5	149480685	149480685	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	149480685	149480685	G	C	SNP	PDGFRB	NM_002609	human	genbank	54_36p	-1	reviewed	missense	c.2545	p.R849G	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
CDX1	1044	genome.wustl.edu	36	5	149542564	149542564	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	149542564	149542564	C	T	SNP	CDX1	NM_001804	human	genbank	54_36p	1	reviewed	silent	c.486	p.T162	0.18	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"HMMPfam_Caudal_act,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ARSI	340075	genome.wustl.edu	36	5	149657080	149657080	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	149657080	149657080	C	A	SNP	ARSI	NM_001012301	human	genbank	54_36p	-1	validated	missense	c.1600	p.G534W	0.04	NULL	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2"	-	no_errors
TCOF1	6949	genome.wustl.edu	36	5	149751776	149751776	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	149751776	149751776	G	A	SNP	TCOF1	NM_001008656	human	genbank	54_36p	1	reviewed	missense	c.3247	p.G1083R	0	NULL	"HMMSmart_SM00667,HMMPfam_Treacle"	-	no_errors
CCDC69	26112	genome.wustl.edu	36	5	150561404	150561404	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	150561404	150561404	G	C	SNP	CCDC69	NM_015621	human	genbank	54_36p	-1	validated	missense	c.163	p.R55G	0.73	NULL	NULL	-	no_errors
SLC36A2	153201	genome.wustl.edu	36	5	150685145	150685145	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	150685145	150685145	C	A	SNP	SLC36A2	NM_181776	human	genbank	54_36p	-1	validated	missense	c.905	p.G302V	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
LPCAT1	79888	genome.wustl.edu	36	5	1516851	1516851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	1516851	1516851	G	A	SNP	LPCAT1	NM_024830	human	genbank	54_36p	-1	validated	missense	c.1520	p.A507V	0	NULL	"PatternScan_EF_HAND_1,superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF47473,HMMSmart_EFh"	-	no_errors
LPCAT1	79888	genome.wustl.edu	36	5	1532751	1532751	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	1532751	1532751	G	A	SNP	LPCAT1	NM_024830	human	genbank	54_36p	-1	validated	silent	c.801	p.N267	0.7	superfamily_SSF69593	"HMMSmart_EFh,HMMPfam_Acyltransferase,HMMSmart_PlsC,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF69593"	-	no_errors
KIF4B	285643	genome.wustl.edu	36	5	154374310	154374310	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	154374310	154374310	G	A	SNP	KIF4B	NM_001099293	human	genbank	54_36p	1	provisional	missense	c.698	p.R233H	0.97	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin"	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
KIF4B	285643	genome.wustl.edu	36	5	154374459	154374459	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	154374459	154374459	G	T	SNP	KIF4B	NM_001099293	human	genbank	54_36p	1	provisional	missense	c.847	p.G283C	0.32	"HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540"	"HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540"	-	no_errors
KIF4B	285643	genome.wustl.edu	36	5	154375363	154375363	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	154375363	154375363	C	A	SNP	KIF4B	NM_001099293	human	genbank	54_36p	1	provisional	missense	c.1751	p.T584K	1	NULL	"HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540"	-	no_errors
KIF4B	285643	genome.wustl.edu	36	5	154375750	154375750	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	154375750	154375750	G	T	SNP	KIF4B	NM_001099293	human	genbank	54_36p	1	provisional	missense	c.2138	p.R713L	1	NULL	"HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540"	-	no_errors
ITK	3702	genome.wustl.edu	36	5	156568576	156568576	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	156568576	156568576	G	A	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	silent	c.237	p.P79	0.93	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	###############################################################################################################################################################################################################################################################	-	no_errors
ITK	3702	genome.wustl.edu	36	5	156570954	156570954	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	156570954	156570954	G	C	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	missense	c.322	p.E108Q	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ITK	3702	genome.wustl.edu	36	5	156582560	156582560	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	156582560	156582560	A	C	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	missense	c.605	p.D202A	1	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	###############################################################################################################################################################################################################################################################	-	no_errors
CYFIP2	26999	genome.wustl.edu	36	5	156700682	156700682	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	156700682	156700682	C	G	SNP	CYFIP2	ENST00000347377	human	ensembl	54_36p	1	known	missense	c.2612	p.T871S	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
ADAM19	8728	genome.wustl.edu	36	5	156851246	156851246	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	156851246	156851246	G	A	SNP	ADAM19	NM_033274	human	genbank	54_36p	-1	reviewed	missense	c.2050	p.P684S	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
RNF145	153830	genome.wustl.edu	36	5	158536337	158536337	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	158536337	158536337	T	C	SNP	RNF145	NM_144726	human	genbank	54_36p	-1	provisional	missense	c.586	p.I196V	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
FBXL7	23194	genome.wustl.edu	36	5	15981325	15981325	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	15981325	15981325	C	T	SNP	FBXL7	NM_012304	human	genbank	54_36p	1	reviewed	missense	c.454	p.R152W	1	"HMMPfam_F-box,HMMSmart_SM00256,superfamily_RNI-like"	"HMMPfam_F-box,HMMSmart_SM00256,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
FBXL7	23194	genome.wustl.edu	36	5	15981350	15981350	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	15981350	15981350	C	T	SNP	FBXL7	NM_012304	human	genbank	54_36p	1	reviewed	missense	c.479	p.T160M	1	superfamily_RNI-like	"HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00367,superfamily_RNI-like"	-	no_errors
ATP10B	23120	genome.wustl.edu	36	5	159980215	159980215	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	159980215	159980215	G	A	SNP	ATP10B	NM_025153	human	genbank	54_36p	-1	validated	silent	c.2133	p.A711	0	superfamily_HAD-like	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3"	-	no_errors
GABRA6	2559	genome.wustl.edu	36	5	161051638	161051638	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	161051638	161051638	G	A	SNP	GABRA6	NM_000811	human	genbank	54_36p	1	reviewed	missense	c.940	p.V314I	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
GABRA1	2554	genome.wustl.edu	36	5	161250636	161250636	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	161250636	161250636	T	A	SNP	GABRA1	NM_000806	human	genbank	54_36p	1	reviewed	splice_site	c.856+2	e7+2	1	-	-	-	no_errors
GABRG2	2566	genome.wustl.edu	36	5	161457389	161457389	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	161457389	161457389	C	A	SNP	GABRG2	NM_198904	human	genbank	54_36p	1	reviewed	silent	c.495	p.T165	0.96	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
GABRG2	2566	genome.wustl.edu	36	5	161463609	161463609	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	161463609	161463609	C	A	SNP	GABRG2	NM_198904	human	genbank	54_36p	1	reviewed	silent	c.768	p.S256	0.99	"HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GABRG2	2566	genome.wustl.edu	36	5	161512879	161512879	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	161512879	161512879	A	G	SNP	GABRG2	NM_198904	human	genbank	54_36p	1	reviewed	missense	c.1355	p.Y452C	1	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
FAM134B	54463	genome.wustl.edu	36	5	16531974	16531974	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	16531974	16531974	T	C	SNP	FAM134B	NM_001034850	human	genbank	54_36p	-1	validated	missense	c.793	p.K265E	1	NULL	NULL	-	no_errors
LOC728843	728843	genome.wustl.edu	36	5	165388554	165388554	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	165388554	165388554	C	T	SNP	LOC728843	XR_015391	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ODZ2	57451	genome.wustl.edu	36	5	167550038	167550038	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	167550038	167550038	G	T	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	missense	c.2688	p.W896C	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167574777	167574777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	167574777	167574777	G	C	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	missense	c.3997	p.E1333Q	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167604048	167604048	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	167604048	167604048	C	G	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	missense	c.5563	p.R1855G	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
WWC1	23286	genome.wustl.edu	36	5	167827458	167827458	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	167827458	167827458	G	A	SNP	WWC1	NM_015238	human	genbank	54_36p	1	provisional	silent	c.3186	p.Q1062	1	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
RARS	5917	genome.wustl.edu	36	5	167861653	167861653	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	167861653	167861653	G	C	SNP	RARS	NM_002887	human	genbank	54_36p	1	reviewed	missense	c.1022	p.R341T	1	"HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase"	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT3	6586	genome.wustl.edu	36	5	168145503	168145503	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	168145503	168145503	A	T	SNP	SLIT3	NM_003062	human	genbank	54_36p	-1	validated	missense	c.1138	p.S380T	1	"superfamily_RNI-like,HMMSmart_SM00369"	###############################################################################################################################################################################################################################################################	-	no_errors
DOCK2	1794	genome.wustl.edu	36	5	169162646	169162646	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	169162646	169162646	G	A	SNP	DOCK2	NM_004946	human	genbank	54_36p	1	validated	missense	c.2561	p.R854Q	1	NULL	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Cytochrome c"	-	no_errors
DOCK2	1794	genome.wustl.edu	36	5	169368078	169368078	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	169368078	169368078	G	T	SNP	DOCK2	NM_004946	human	genbank	54_36p	1	validated	splice_site	c.3073-1	e31-1	1	-	-	-	no_errors
LCP2	3937	genome.wustl.edu	36	5	169612768	169612768	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	169612768	169612768	G	T	SNP	LCP2	NM_005565	human	genbank	54_36p	-1	reviewed	missense	c.1178	p.A393D	0	superfamily_SH2 domain	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
RANBP17	64901	genome.wustl.edu	36	5	170273772	170273772	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	170273772	170273772	G	C	SNP	RANBP17	NM_022897	human	genbank	54_36p	1	provisional	missense	c.784	p.D262H	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N"	-	no_errors
RANBP17	64901	genome.wustl.edu	36	5	170284047	170284047	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	170284047	170284047	A	G	SNP	RANBP17	NM_022897	human	genbank	54_36p	1	provisional	silent	c.1356	p.E452	1	superfamily_ARM repeat	"HMMPfam_IBN_N,superfamily_ARM repeat"	-	no_errors
STK10	6793	genome.wustl.edu	36	5	171516300	171516300	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	171516300	171516300	A	G	SNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	missense	c.254	p.L85P	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SH3PXD2B	285590	genome.wustl.edu	36	5	171710170	171710170	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	171710170	171710170	C	A	SNP	SH3PXD2B	NM_001017995	human	genbank	54_36p	-1	validated	missense	c.814	p.A272S	1	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	"superfamily_PX,HMMPfam_PX,HMMSmart_PX,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
DUSP1	1843	genome.wustl.edu	36	5	172129301	172129301	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	172129301	172129301	C	T	SNP	DUSP1	NM_004417	human	genbank	54_36p	-1	reviewed	missense	c.616	p.V206I	1	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	"superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
ERGIC1	57222	genome.wustl.edu	36	5	172256654	172256654	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	172256654	172256654	G	A	SNP	ERGIC1	NM_001031711	human	genbank	54_36p	1	reviewed	silent	c.126	p.S42	1	NULL	HMMPfam_DUF1692	-	no_errors
BNIP1	100128619	genome.wustl.edu	36	5	172504181	172504181	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	172504181	172504181	C	T	SNP	LOC100128619	XM_001720411	human	genbank	54_36p	-1	model	missense	c.49	p.D17N	1	NULL	NULL	-	no_errors
BOD1	91272	genome.wustl.edu	36	5	172968958	172968958	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	172968958	172968958	C	T	SNP	BOD1	NM_138369	human	genbank	54_36p	-1	provisional	missense	c.448	p.E150K	1	NULL	NULL	-	no_errors
BOD1	91272	genome.wustl.edu	36	5	172972860	172972860	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	172972860	172972860	G	A	SNP	BOD1	NM_138369	human	genbank	54_36p	-1	provisional	missense	c.242	p.A81V	1	NULL	NULL	-	no_errors
HMP19	51617	genome.wustl.edu	36	5	173466990	173466990	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	173466990	173466990	G	A	SNP	HMP19	NM_015980	human	genbank	54_36p	1	provisional	missense	c.392	p.R131H	1	HMMPfam_Calcyon	HMMPfam_Calcyon	-	no_errors
DRD1	1812	genome.wustl.edu	36	5	174802483	174802483	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	174802483	174802483	G	T	SNP	DRD1	NM_000794	human	genbank	54_36p	-1	reviewed	missense	c.226	p.L76M	0.99	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SFXN1	94081	genome.wustl.edu	36	5	174873161	174873161	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	174873161	174873161	T	C	SNP	SFXN1	NM_022754	human	genbank	54_36p	1	validated	missense	c.686	p.V229A	1	HMMPfam_Mtc	HMMPfam_Mtc	-	no_errors
HRH2	3274	genome.wustl.edu	36	5	175043082	175043082	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	175043082	175043082	G	C	SNP	HRH2	NM_022304	human	genbank	54_36p	1	reviewed	silent	c.240	p.L80	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FAM153B	202134	genome.wustl.edu	36	5	175452856	175452856	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	175452856	175452856	A	T	SNP	FAM153B	NM_001079529	human	genbank	54_36p	1	validated	silent	c.312	p.T104	0	NULL	NULL	-	no_errors
ARL10	285598	genome.wustl.edu	36	5	175731417	175731417	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	175731417	175731417	G	C	SNP	ARL10	NM_173664	human	genbank	54_36p	1	validated	missense	c.648	p.L216F	1	"superfamily_SSF52540,HMMPfam_Arf"	"superfamily_SSF52540,HMMPfam_Arf"	-	no_errors
FAF2	23197	genome.wustl.edu	36	5	175853835	175853835	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	175853835	175853835	G	A	SNP	FAF2	NM_014613	human	genbank	54_36p	1	reviewed	missense	c.614	p.R205K	0.99	HMMSmart_UAS	"superfamily_UBA_like,HMMSmart_UAS,HMMPfam_UBX,superfamily_SSF54236"	-	no_errors
HK3	3101	genome.wustl.edu	36	5	176243669	176243669	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	176243669	176243669	G	A	SNP	HK3	NM_002115	human	genbank	54_36p	-1	reviewed	missense	c.1930	p.R644W	0.98	"HMMPfam_Hexokinase_1,superfamily_SSF53067"	"superfamily_SSF53067,HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES"	-	no_errors
HK3	3101	genome.wustl.edu	36	5	176255732	176255732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	176255732	176255732	C	T	SNP	HK3	NM_002115	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12E	0	NULL	"HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES,superfamily_SSF53067"	-	no_errors
UIMC1	51720	genome.wustl.edu	36	5	176270917	176270917	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	176270917	176270917	C	T	SNP	UIMC1	NM_016290	human	genbank	54_36p	-1	provisional	splice_site	c.1676+1	e10+1	1	-	-	-	no_errors
UIMC1	51720	genome.wustl.edu	36	5	176329306	176329306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	176329306	176329306	C	T	SNP	UIMC1	NM_016290	human	genbank	54_36p	-1	provisional	missense	c.365	p.R122Q	1	HMMSmart_SM00726	"HMMPfam_UIM,HMMSmart_SM00726"	-	no_errors
UIMC1	51720	genome.wustl.edu	36	5	176342143	176342143	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	176342143	176342143	G	T	SNP	UIMC1	NM_016290	human	genbank	54_36p	-1	provisional	missense	c.80	p.S27Y	0.01	NULL	"HMMPfam_UIM,HMMSmart_SM00726"	-	no_errors
NSD1	64324	genome.wustl.edu	36	5	176619656	176619656	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	176619656	176619656	C	A	SNP	NSD1	NM_022455	human	genbank	54_36p	1	reviewed	missense	c.5027	p.A1676D	1	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249"	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508"	-	no_errors
ZNF354A	6940	genome.wustl.edu	36	5	178072355	178072355	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178072355	178072355	G	T	SNP	ZNF354A	NM_005649	human	genbank	54_36p	-1	validated	missense	c.1130	p.T377N	1	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF354B	117608	genome.wustl.edu	36	5	178242706	178242706	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178242706	178242706	G	A	SNP	ZNF354B	NM_058230	human	genbank	54_36p	1	validated	missense	c.647	p.C216Y	0.76	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFP2	80108	genome.wustl.edu	36	5	178291490	178291490	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178291490	178291490	G	C	SNP	ZFP2	NM_030613	human	genbank	54_36p	1	provisional	missense	c.570	p.E190D	0.59	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF454	285676	genome.wustl.edu	36	5	178324574	178324574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178324574	178324574	C	G	SNP	ZNF454	NM_182594	human	genbank	54_36p	1	provisional	missense	c.563	p.S188C	0.01	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF354C	30832	genome.wustl.edu	36	5	178438430	178438430	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178438430	178438430	G	C	SNP	ZNF354C	NM_014594	human	genbank	54_36p	1	provisional	missense	c.391	p.E131Q	0.98	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RUFY1	80230	genome.wustl.edu	36	5	178949231	178949231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178949231	178949231	G	C	SNP	RUFY1	NM_025158	human	genbank	54_36p	1	validated	missense	c.1105	p.E369Q	0.99	NULL	"HMMPfam_RUN,HMMSmart_SM00593,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
RUFY1	80230	genome.wustl.edu	36	5	178953205	178953205	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178953205	178953205	C	G	SNP	RUFY1	NM_025158	human	genbank	54_36p	1	validated	missense	c.1366	p.L456V	1	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_RUN,HMMSmart_SM00593,superfamily_FYVE/PHD zinc finger"	-	no_errors
RUFY1	80230	genome.wustl.edu	36	5	178969029	178969029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	178969029	178969029	G	C	SNP	RUFY1	NM_025158	human	genbank	54_36p	1	validated	missense	c.2030	p.S677T	1	"HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger"	"HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_RUN,HMMSmart_SM00593,superfamily_FYVE/PHD zinc finger"	-	no_errors
MAML1	9794	genome.wustl.edu	36	5	179125186	179125186	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	179125186	179125186	G	A	SNP	MAML1	NM_014757	human	genbank	54_36p	1	reviewed	missense	c.569	p.R190H	1	NULL	HMMPfam_MamL-1	-	no_errors
RNF130	55819	genome.wustl.edu	36	5	179337838	179337838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	179337838	179337838	C	G	SNP	RNF130	NM_018434	human	genbank	54_36p	-1	reviewed	missense	c.819	p.Q273H	1	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	"PatternScan_ZF_RING_1,superfamily_SSF52025,HMMPfam_PA,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
RASGEF1C	255426	genome.wustl.edu	36	5	179478982	179478982	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	179478982	179478982	C	T	SNP	RASGEF1C	NM_175062	human	genbank	54_36p	-1	validated	missense	c.877	p.G293S	1	"superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF"	"superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
MGAT1	4245	genome.wustl.edu	36	5	180152019	180152019	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	180152019	180152019	G	A	SNP	MGAT1	NM_002406	human	genbank	54_36p	-1	reviewed	missense	c.559	p.R187C	0.59	"HMMPfam_GNT-I,superfamily_SSF53448"	"HMMPfam_GNT-I,superfamily_SSF53448"	-	no_errors
OR2V2	285659	genome.wustl.edu	36	5	180514948	180514948	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	180514948	180514948	C	A	SNP	OR2V2	NM_206880	human	genbank	54_36p	1	provisional	missense	c.400	p.P134T	0.97	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CDH18	1016	genome.wustl.edu	36	5	19607578	19607578	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	19607578	19607578	C	A	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	missense	c.1120	p.V374F	1	"superfamily_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH18	1016	genome.wustl.edu	36	5	19874754	19874754	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	19874754	19874754	C	T	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	silent	c.99	p.V33	1	NULL	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
PLEKHG4B	153478	genome.wustl.edu	36	5	209279	209279	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	209279	209279	G	T	SNP	PLEKHG4B	NM_052909	human	genbank	54_36p	1	validated	missense	c.1234	p.V412F	0.83	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
CDH12	1010	genome.wustl.edu	36	5	21788078	21788078	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	21788078	21788078	A	T	SNP	CDH12	NM_004061	human	genbank	54_36p	-1	reviewed	missense	c.1910	p.L637Q	1	NULL	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
LOC643300	643300	genome.wustl.edu	36	5	21918591	21918591	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	21918591	21918591	C	A	SNP	LOC643300	XR_016534	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CDH12	1010	genome.wustl.edu	36	5	22011192	22011192	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	22011192	22011192	G	A	SNP	CDH12	NM_004061	human	genbank	54_36p	-1	reviewed	silent	c.291	p.G97	0.99	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
PRDM9	56979	genome.wustl.edu	36	5	23545367	23545367	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	23545367	23545367	A	G	SNP	PRDM9	NM_020227	human	genbank	54_36p	1	provisional	missense	c.101	p.Y34C	0.87	"superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB"	"superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB,HMMPfam_SSXRD,superfamily_SSF82199,HMMSmart_SET,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2"	-	no_errors
PRDM9	56979	genome.wustl.edu	36	5	23562913	23562913	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	23562913	23562913	T	C	SNP	PRDM9	NM_020227	human	genbank	54_36p	1	provisional	silent	c.1959	p.T653	0.01	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMSmart_SET,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_SSXRD,superfamily_SSF57667,superfamily_SSF82199"	-	no_errors
CDH10	1008	genome.wustl.edu	36	5	24523814	24523814	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	24523814	24523814	C	T	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	silent	c.2082	p.T694	0.63	HMMPfam_Cadherin_C	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH10	1008	genome.wustl.edu	36	5	24547225	24547225	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	24547225	24547225	C	A	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	missense	c.970	p.D324Y	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH10	1008	genome.wustl.edu	36	5	24571018	24571018	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	24571018	24571018	C	T	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	silent	c.774	p.T258	0.98	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH10	1008	genome.wustl.edu	36	5	24573255	24573255	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	24573255	24573255	A	G	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	missense	c.517	p.S173P	1	"HMMPfam_Cadherin,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH10	1008	genome.wustl.edu	36	5	24629198	24629198	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	24629198	24629198	T	A	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	missense	c.159	p.K53N	1	superfamily_Cadherin	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH9	1007	genome.wustl.edu	36	5	26951726	26951726	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	26951726	26951726	C	A	SNP	CDH9	NM_016279	human	genbank	54_36p	-1	reviewed	missense	c.292	p.G98C	1	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin"	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH6	1004	genome.wustl.edu	36	5	31303462	31303462	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	31303462	31303462	G	C	SNP	CDH6	NM_004932	human	genbank	54_36p	1	reviewed	missense	c.125	p.G42A	1	NULL	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH6	1004	genome.wustl.edu	36	5	31359020	31359020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	31359020	31359020	G	A	SNP	CDH6	NM_004932	human	genbank	54_36p	1	reviewed	missense	c.2221	p.E741K	1	HMMPfam_Cadherin_C	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
RNASEN	29102	genome.wustl.edu	36	5	31485177	31485177	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	31485177	31485177	C	G	SNP	RNASEN	NM_013235	human	genbank	54_36p	-1	validated	missense	c.2789	p.R930T	1	superfamily_RNase III catalytic domain-like (Pfam 00636)	"superfamily_RNase III catalytic domain-like (Pfam 00636),HMMSmart_SM00535,PatternScan_RNASE_3_1,HMMPfam_Ribonuclease_3,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358"	-	no_errors
C5orf22	55322	genome.wustl.edu	36	5	31574387	31574387	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	31574387	31574387	C	G	SNP	C5orf22	NM_018356	human	genbank	54_36p	1	validated	missense	c.641	p.T214S	0.08	NULL	NULL	-	no_errors
PDZD2	23037	genome.wustl.edu	36	5	32084538	32084538	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	32084538	32084538	T	G	SNP	PDZD2	NM_178140	human	genbank	54_36p	1	reviewed	missense	c.1656	p.S552R	0	NULL	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
GOLPH3	64083	genome.wustl.edu	36	5	32162087	32162087	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	32162087	32162087	C	T	SNP	GOLPH3	NM_022130	human	genbank	54_36p	-1	reviewed	silent	c.885	p.A295	0.02	HMMPfam_GPP34	HMMPfam_GPP34	-	no_errors
MTMR12	54545	genome.wustl.edu	36	5	32277959	32277959	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	32277959	32277959	C	G	SNP	MTMR12	NM_001040446	human	genbank	54_36p	-1	reviewed	missense	c.1132	p.E378Q	0.9	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related"	-	no_errors
LOC728553	728553	genome.wustl.edu	36	5	33198391	33198391	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	33198391	33198391	C	A	SNP	LOC728553	XR_015414	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ADAMTS12	81792	genome.wustl.edu	36	5	33651729	33651729	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	33651729	33651729	C	G	SNP	ADAMTS12	NM_030955	human	genbank	54_36p	-1	reviewed	silent	c.2349	p.L783	1	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
AGXT2	64902	genome.wustl.edu	36	5	35039672	35039672	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	35039672	35039672	A	G	SNP	AGXT2	NM_031900	human	genbank	54_36p	-1	reviewed	missense	c.1390	p.C464R	1	superfamily_PyrdxlP-dep_Trfase_major	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3"	-	no_errors
AGXT2	64902	genome.wustl.edu	36	5	35071120	35071120	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	35071120	35071120	C	G	SNP	AGXT2	NM_031900	human	genbank	54_36p	-1	reviewed	missense	c.545	p.R182T	1	"HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major"	"HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major"	-	no_errors
AGXT2	64902	genome.wustl.edu	36	5	35083713	35083713	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	35083713	35083713	C	G	SNP	AGXT2	NM_031900	human	genbank	54_36p	-1	reviewed	silent	c.42	p.L14	0	NULL	"HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major"	-	no_errors
PRLR	5618	genome.wustl.edu	36	5	35120353	35120353	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	35120353	35120353	G	T	SNP	PRLR	NM_000949	human	genbank	54_36p	-1	validated	missense	c.349	p.L117I	0.02	superfamily_Fibronectin type III	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F1"	-	no_errors
SPEF2	79925	genome.wustl.edu	36	5	35809758	35809758	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	35809758	35809758	C	T	SNP	SPEF2	NM_024867	human	genbank	54_36p	1	validated	missense	c.3956	p.S1319L	0.02	NULL	"HMMPfam_DUF1042,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_hATC"	-	no_errors
IL7R	3575	genome.wustl.edu	36	5	35912193	35912193	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	35912193	35912193	A	G	SNP	IL7R	NM_002185	human	genbank	54_36p	1	reviewed	missense	c.1228	p.T410A	0	NULL	"superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
UGT3A1	133688	genome.wustl.edu	36	5	35990268	35990268	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	35990268	35990268	C	A	SNP	UGT3A1	NM_152404	human	genbank	54_36p	-1	provisional	silent	c.1365	p.L455	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT3A2	167127	genome.wustl.edu	36	5	36071727	36071727	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	36071727	36071727	C	T	SNP	UGT3A2	NM_174914	human	genbank	54_36p	-1	provisional	missense	c.1402	p.A468T	0.76	HMMPfam_UDPGT	"superfamily_SSF53756,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
SKP2	6502	genome.wustl.edu	36	5	36216135	36216135	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	36216135	36216135	G	A	SNP	SKP2	ENST00000308927	human	ensembl	54_36p	1	known	missense	c.1147	p.G383R	0.01	NULL	"HMMPfam_F-box,superfamily_F-box domain,HMMSmart_SM00256,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
C5orf33	133686	genome.wustl.edu	36	5	36253704	36253704	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	36253704	36253704	C	T	SNP	C5orf33	NM_001085411	human	genbank	54_36p	-1	validated	silent	c.684	p.G228	1	superfamily_NAD kinase (Pfam 01513)	"superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase"	-	no_errors
IRX1	79192	genome.wustl.edu	36	5	3652809	3652809	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	3652809	3652809	C	T	SNP	IRX1	NM_024337	human	genbank	54_36p	1	validated	silent	c.747	p.A249	0.69	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMSmart_IRO"	-	no_errors
NIPBL	25836	genome.wustl.edu	36	5	37056376	37056376	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	37056376	37056376	A	G	SNP	NIPBL	NM_133433	human	genbank	54_36p	1	reviewed	missense	c.5069	p.K1690R	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NIPBL	25836	genome.wustl.edu	36	5	37062130	37062130	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	37062130	37062130	A	G	SNP	NIPBL	NM_133433	human	genbank	54_36p	1	reviewed	missense	c.5752	p.T1918A	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
LOC391777	391777	genome.wustl.edu	36	5	37121120	37121120	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	37121120	37121120	T	C	SNP	LOC391777	XR_016978	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
C5orf42	65250	genome.wustl.edu	36	5	37205347	37205347	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	37205347	37205347	G	T	SNP	C5orf42	NM_023073	human	genbank	54_36p	-1	predicted	missense	c.3176	p.S1059Y	0.01	NULL	NULL	-	no_errors
LOC728707	728707	genome.wustl.edu	36	5	37542684	37542684	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	37542684	37542684	G	A	SNP	LOC728707	XR_015588	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
EGFLAM	133584	genome.wustl.edu	36	5	38474280	38474280	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	38474280	38474280	C	T	SNP	EGFLAM	NM_152403	human	genbank	54_36p	1	validated	silent	c.2430	p.C810	1	"HMMSmart_EGF,HMMPfam_EGF,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2"	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_EGF,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,HMMSmart_LamG,HMMPfam_Laminin_G_1,HMMPfam_EGF,PatternScan_EGF_2,HMMPfam_Laminin_G_2"	-	no_errors
FYB	2533	genome.wustl.edu	36	5	39170133	39170133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	39170133	39170133	G	A	SNP	FYB	NM_001465	human	genbank	54_36p	-1	validated	missense	c.1751	p.P584L	0	NULL	"PatternScan_XYLOSE_ISOMERASE_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
LOC285634	285634	genome.wustl.edu	36	5	39754878	39754878	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	39754878	39754878	G	A	SNP	LOC285634	XR_017261	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.83	-	-	-	pseudogene
LOC285634	285634	genome.wustl.edu	36	5	39754959	39754959	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	39754959	39754959	G	T	SNP	LOC285634	XR_017261	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
RPL37	6167	genome.wustl.edu	36	5	40871055	40871055	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	40871055	40871055	C	T	SNP	RPL37	ENST00000315577	human	ensembl	54_36p	-1	known	silent	c.15	p.P5	0.05	NULL	"superfamily_Ribosomal_zn-bd,HMMPfam_Ribosomal_L37e"	-	no_start_codon
C7	730	genome.wustl.edu	36	5	41012691	41012691	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	41012691	41012691	C	T	SNP	C7	NM_000587	human	genbank	54_36p	1	reviewed	silent	c.2157	p.Y719	0.99	"HMMSmart_FIMAC,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
HEATR7B2	133558	genome.wustl.edu	36	5	41068913	41068913	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	41068913	41068913	A	G	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	missense	c.2348	p.I783T	0.79	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
C6	729	genome.wustl.edu	36	5	41185273	41185273	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	41185273	41185273	T	C	SNP	C6	NM_000065	human	genbank	54_36p	-1	reviewed	missense	c.2450	p.K817R	1	"HMMSmart_FIMAC,HMMSmart_KAZAL,HMMPfam_Kazal_2"	###############################################################################################################################################################################################################################################################	-	no_errors
C6	729	genome.wustl.edu	36	5	41195071	41195071	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	41195071	41195071	T	G	SNP	C6	NM_000065	human	genbank	54_36p	-1	reviewed	missense	c.1726	p.T576P	0	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1"	###############################################################################################################################################################################################################################################################	-	no_errors
PLCXD3	345557	genome.wustl.edu	36	5	41349496	41349496	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	41349496	41349496	C	A	SNP	PLCXD3	NM_001005473	human	genbank	54_36p	-1	validated	nonsense	c.946	p.E316*	1	NULL	superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
MGC42105	167359	genome.wustl.edu	36	5	43281815	43281815	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	43281815	43281815	G	T	SNP	MGC42105	NM_153361	human	genbank	54_36p	1	provisional	missense	c.181	p.V61L	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MGC42105	167359	genome.wustl.edu	36	5	43316288	43316288	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	43316288	43316288	C	T	SNP	MGC42105	NM_153361	human	genbank	54_36p	1	provisional	silent	c.1011	p.F337	1	superfamily_Protein kinase-like (PK-like)	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
NNT	23530	genome.wustl.edu	36	5	43691842	43691842	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	43691842	43691842	G	A	SNP	NNT	NM_012343	human	genbank	54_36p	1	reviewed	missense	c.2203	p.A735T	1	HMMPfam_PNTB	"superfamily_SSF52283,PatternScan_ALADH_PNT_1,HMMPfam_AlaDh_PNT_N,superfamily_NAD(P)-bd,HMMPfam_AlaDh_PNT_C,PatternScan_ALADH_PNT_2,HMMPfam_PNTB,superfamily_SSF52467"	-	no_errors
ADAMTS16	170690	genome.wustl.edu	36	5	5239163	5239163	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	5239163	5239163	A	G	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	splice_site	c.764-2	e5-2	1	-	-	-	no_errors
ADAMTS16	170690	genome.wustl.edu	36	5	5239221	5239221	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	5239221	5239221	T	C	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	missense	c.820	p.C274R	0	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
ARL15	54622	genome.wustl.edu	36	5	53503386	53503386	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	53503386	53503386	C	A	SNP	ARL15	NM_019087	human	genbank	54_36p	-1	validated	missense	c.178	p.V60F	0.79	"HMMPfam_Arf,superfamily_SSF52540"	"HMMPfam_Arf,superfamily_SSF52540"	-	no_errors
GZMA	3001	genome.wustl.edu	36	5	54439842	54439842	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	54439842	54439842	G	A	SNP	GZMA	NM_006144	human	genbank	54_36p	1	reviewed	missense	c.490	p.D164N	0.02	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases"	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
DHX29	54505	genome.wustl.edu	36	5	54616938	54616938	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	54616938	54616938	A	G	SNP	DHX29	NM_019030	human	genbank	54_36p	-1	validated	silent	c.1296	p.D432	1	NULL	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
RNF138P1	379013	genome.wustl.edu	36	5	54862119	54862119	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	54862119	54862119	G	A	SNP	RNF138P1	NR_001575	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
IL6ST	3572	genome.wustl.edu	36	5	55294991	55294991	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	55294991	55294991	T	A	SNP	IL6ST	NM_002184	human	genbank	54_36p	-1	reviewed	silent	c.759	p.I253	0	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"HMMPfam_Lep_receptor_Ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
ACTBL2	345651	genome.wustl.edu	36	5	56813410	56813410	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	56813410	56813410	G	C	SNP	ACTBL2	NM_001017992	human	genbank	54_36p	-1	validated	silent	c.882	p.L294	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
RAB3C	115827	genome.wustl.edu	36	5	58057676	58057676	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	58057676	58057676	G	A	SNP	RAB3C	NM_138453	human	genbank	54_36p	1	provisional	missense	c.343	p.E115K	1	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	-	no_errors
HTR1A	3350	genome.wustl.edu	36	5	63292623	63292623	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	63292623	63292623	C	T	SNP	HTR1A	NM_000524	human	genbank	54_36p	-1	validated	missense	c.680	p.R227H	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SREK1IP1	285672	genome.wustl.edu	36	5	64072705	64072705	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	64072705	64072705	G	C	SNP	SFRS12IP1	NM_173829	human	genbank	54_36p	-1	validated	missense	c.140	p.T47R	1	NULL	HMMSmart_ZnF_C2HC	-	no_errors
ADAMTS6	11174	genome.wustl.edu	36	5	64546443	64546443	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	64546443	64546443	C	G	SNP	ADAMTS6	NM_197941	human	genbank	54_36p	-1	reviewed	missense	c.2509	p.D837H	1	superfamily_TSP-1 type 1 repeat	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
TRIM23	373	genome.wustl.edu	36	5	64928098	64928098	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	64928098	64928098	A	G	SNP	TRIM23	NM_001656	human	genbank	54_36p	-1	reviewed	silent	c.1326	p.T442	1	"HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM23	373	genome.wustl.edu	36	5	64945746	64945746	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	64945746	64945746	G	A	SNP	TRIM23	NM_001656	human	genbank	54_36p	-1	reviewed	nonsense	c.301	p.R101*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
C5orf44	80006	genome.wustl.edu	36	5	64993649	64993649	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	64993649	64993649	A	G	SNP	C5orf44	NM_001093755	human	genbank	54_36p	1	validated	missense	c.914	p.D305G	1	NULL	HMMPfam_DUF974	-	no_errors
ERBB2IP	55914	genome.wustl.edu	36	5	65385839	65385839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	65385839	65385839	C	G	SNP	ERBB2IP	NM_018695	human	genbank	54_36p	1	reviewed	missense	c.2937	p.I979M	0.98	NULL	"superfamily_SSF52058,HMMPfam_LRR_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
CD180	4064	genome.wustl.edu	36	5	66516124	66516124	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	66516124	66516124	A	G	SNP	CD180	NM_005582	human	genbank	54_36p	-1	validated	silent	c.303	p.H101	0	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT"	-	no_errors
NSUN2	54888	genome.wustl.edu	36	5	6653248	6653248	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	6653248	6653248	G	A	SNP	NSUN2	NM_017755	human	genbank	54_36p	-1	validated	missense	c.2095	p.L699F	1	NULL	"PatternScan_NOL1_NOP2_SUN,superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu"	-	no_errors
PMCHL2	5370	genome.wustl.edu	36	5	70707956	70707956	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	70707956	70707956	C	T	SNP	PMCHL2	NR_003922	human	genbank	54_36p	1	validated	rna	NULL	NULL	0.96	-	-	-	pseudogene
MAP1B	4131	genome.wustl.edu	36	5	71525796	71525796	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	71525796	71525796	C	T	SNP	MAP1B	NM_005909	human	genbank	54_36p	1	validated	silent	c.858	p.G286	0.97	NULL	"HMMPfam_MAP1B_neuraxin,PatternScan_MAP1B_NEURAXIN"	-	no_errors
TMEM174	134288	genome.wustl.edu	36	5	72504933	72504933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	72504933	72504933	C	A	SNP	TMEM174	NM_153217	human	genbank	54_36p	1	validated	missense	c.107	p.A36E	1	NULL	NULL	-	no_errors
RGNEF	64283	genome.wustl.edu	36	5	73105497	73105497	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	73105497	73105497	C	T	SNP	RGNEF	NM_001080479	human	genbank	54_36p	1	provisional	silent	c.537	p.S179	0.99	NULL	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
RGNEF	64283	genome.wustl.edu	36	5	73178047	73178047	+	Silent	SNP	A	G	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	73178047	73178047	A	G	SNP	RGNEF	NM_001080479	human	genbank	54_36p	1	provisional	silent	c.1626	p.L542	0.98	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_PH domain-like,superfamily_Cysteine-rich domain"	-	no_errors
ENC1	8507	genome.wustl.edu	36	5	73967028	73967028	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	73967028	73967028	C	G	SNP	ENC1	NM_003633	human	genbank	54_36p	-1	validated	missense	c.1039	p.G347R	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
HEXB	3074	genome.wustl.edu	36	5	74050387	74050387	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	74050387	74050387	G	C	SNP	HEXB	NM_000521	human	genbank	54_36p	1	reviewed	missense	c.1252	p.G418R	0.98	"HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	"superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	-	no_errors
GCNT4	51301	genome.wustl.edu	36	5	74360756	74360756	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	74360756	74360756	G	C	SNP	GCNT4	NM_016591	human	genbank	54_36p	-1	validated	missense	c.863	p.S288C	1	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
HMGCR	3156	genome.wustl.edu	36	5	74682418	74682418	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	74682418	74682418	C	G	SNP	HMGCR	NM_000859	human	genbank	54_36p	1	reviewed	missense	c.829	p.P277A	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
F2RL2	2151	genome.wustl.edu	36	5	75954796	75954796	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	75954796	75954796	A	C	SNP	F2RL2	NM_004101	human	genbank	54_36p	-1	reviewed	missense	c.16	p.F6V	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
IQGAP2	10788	genome.wustl.edu	36	5	75968737	75968737	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	75968737	75968737	C	A	SNP	IQGAP2	NM_006633	human	genbank	54_36p	1	validated	missense	c.1903	p.L635I	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ADCY2	108	genome.wustl.edu	36	5	7765987	7765987	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	7765987	7765987	C	G	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	missense	c.1597	p.H533D	1	HMMPfam_DUF1053	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
ZDHHC11B	653082	genome.wustl.edu	36	5	783566	783566	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	783566	783566	C	G	SNP	ZDHHC11B	XM_926053	human	genbank	54_36p	-1	model	silent	c.1041	p.P347	0	NULL	HMMPfam_zf-DHHC	-	no_errors
BHMT	635	genome.wustl.edu	36	5	78459541	78459541	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	78459541	78459541	C	G	SNP	BHMT	NM_001713	human	genbank	54_36p	1	reviewed	missense	c.1016	p.T339S	1	superfamily_S_methyl_trans	"superfamily_S_methyl_trans,HMMPfam_S-methyl_trans"	-	no_errors
ADCY2	108	genome.wustl.edu	36	5	7855364	7855364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	7855364	7855364	G	A	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	missense	c.2662	p.V888I	1	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase"	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
PAPD4	167153	genome.wustl.edu	36	5	79013584	79013584	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	79013584	79013584	G	T	SNP	PAPD4	NM_173797	human	genbank	54_36p	1	validated	missense	c.1324	p.A442S	1	superfamily_PAP/OAS1 substrate-binding domain	"superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc"	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79064909	79064909	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	79064909	79064909	T	G	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	missense	c.4565	p.V1522G	0	NULL	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY"	-	no_errors
CMYA5	202333	genome.wustl.edu	36	5	79068119	79068119	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	79068119	79068119	C	T	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	missense	c.7775	p.T2592I	0	NULL	"HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
FASTKD3	79072	genome.wustl.edu	36	5	7920093	7920093	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	7920093	7920093	A	G	SNP	FASTKD3	NM_024091	human	genbank	54_36p	-1	validated	silent	c.1104	p.P368	0.65	NULL	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
MTRR	4552	genome.wustl.edu	36	5	7938939	7938940	+	Nonsense_Mutation	DNP	GA	GA	AT	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	GA	GA	GA	AT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	7938939	7938940	GA	AT	DNP	MTRR	NM_024010	human	genbank	54_36p	1	reviewed	nonsense	c.1110_1111	p.KI371*	0.278:0.003	"superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1"	"superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1"	-	no_errors
VCAN	1462	genome.wustl.edu	36	5	82869973	82869973	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	82869973	82869973	T	A	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	missense	c.5395	p.L1799I	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VCAN	1462	genome.wustl.edu	36	5	82871305	82871305	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	82871305	82871305	A	G	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	missense	c.6727	p.T2243A	0.19	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VCAN	1462	genome.wustl.edu	36	5	82872381	82872381	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	82872381	82872381	A	C	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	silent	c.7803	p.V2601	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LOC645181	645181	genome.wustl.edu	36	5	84881560	84881560	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	84881560	84881560	C	T	SNP	LOC645181	XR_017382	human	genbank	54_36p	1	model	rna	NULL	NULL	0.98	-	-	-	pseudogene
CCNH	902	genome.wustl.edu	36	5	86726040	86726040	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	86726040	86726040	G	C	SNP	CCNH	NM_001239	human	genbank	54_36p	-1	reviewed	missense	c.951	p.D317E	0.99	NULL	"PatternScan_CYCLINS,superfamily_Cyclin_like,HMMSmart_CYCLIN,HMMPfam_Cyclin_N"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	89960995	89960995	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	89960995	89960995	C	G	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.1722	p.I574M	1	NULL	"HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	89961060	89961060	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	89961060	89961060	T	A	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	nonsense	c.1787	p.L596*	1	NULL	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	89974258	89974258	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	89974258	89974258	C	T	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	silent	c.2290	p.L764	0.95	HMMSmart_SM00237	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	90024328	90024328	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	90024328	90024328	A	G	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.7102	p.S2368G	1	NULL	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	90025600	90025600	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	90025600	90025600	G	A	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.7271	p.R2424K	0.81	NULL	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	90060294	90060294	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	90060294	90060294	G	C	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.10214	p.R3405P	0.15	HMMPfam_EPTP	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	90085245	90085245	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	90085245	90085245	C	A	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	silent	c.11220	p.T3740	0	NULL	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
GPR98	84059	genome.wustl.edu	36	5	90088717	90088717	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	90088717	90088717	G	C	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.11923	p.E3975Q	0.98	HMMSmart_SM00237	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
ENSG00000213731	0	genome.wustl.edu	36	5	90808219	90808220	+	Splice_Site	INS	-	-	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	5	90808219	90808220	-	G	INS	ENSG00000213731	ENST00000395972	human	ensembl	54_36p	1	novel	splice_site_ins	c.NULL	NULL	0.983:0.990	-	-	-	no_coding_region:pseudogene
NR2F1	7025	genome.wustl.edu	36	5	92955171	92955171	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	92955171	92955171	T	G	SNP	NR2F1	NM_005654	human	genbank	54_36p	1	provisional	missense	c.1139	p.V380G	1	"superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMPfam_zf-C4_C,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
TTC37	9652	genome.wustl.edu	36	5	94882234	94882234	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	94882234	94882234	C	G	SNP	TTC37	NM_014639	human	genbank	54_36p	-1	provisional	missense	c.2056	p.D686H	0.95	NULL	"HMMSmart_TPR,superfamily_SSF48452,HMMPfam_TPR_1,superfamily_Prenyl_trans,HMMPfam_Sel1,HMMSmart_SEL1"	-	no_errors
TTC37	9652	genome.wustl.edu	36	5	94882252	94882252	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	94882252	94882252	C	A	SNP	TTC37	NM_014639	human	genbank	54_36p	-1	provisional	missense	c.2038	p.A680S	1	NULL	"HMMPfam_TPR_1,HMMPfam_Sel1,HMMSmart_SEL1,HMMSmart_TPR,superfamily_Prenyl_trans,superfamily_SSF48452"	-	no_errors
TTC37	9652	genome.wustl.edu	36	5	94883637	94883637	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	94883637	94883637	C	A	SNP	TTC37	NM_014639	human	genbank	54_36p	-1	provisional	nonsense	c.1888	p.E630*	0.97	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_Prenyl_trans"	"HMMPfam_TPR_1,HMMPfam_Sel1,HMMSmart_SEL1,HMMSmart_TPR,superfamily_Prenyl_trans,superfamily_SSF48452"	-	no_errors
ERAP1	51752	genome.wustl.edu	36	5	96147252	96147252	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	96147252	96147252	C	T	SNP	ERAP1	NM_016442	human	genbank	54_36p	-1	validated	missense	c.1939	p.V647I	1	NULL	"superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE"	-	no_errors
LIX1	167410	genome.wustl.edu	36	5	96458274	96458274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	5	96458274	96458274	C	T	SNP	LIX1	NM_153234	human	genbank	54_36p	-1	validated	missense	c.557	p.R186Q	1	NULL	PatternScan_IF	-	no_errors
TAS2R1	50834	genome.wustl.edu	36	5	9682459	9682459	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	9682459	9682459	G	C	SNP	TAS2R1	NM_019599	human	genbank	54_36p	-1	reviewed	missense	c.686	p.S229C	0.01	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
TAS2R1	50834	genome.wustl.edu	36	5	9682483	9682483	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	9682483	9682483	C	A	SNP	TAS2R1	NM_019599	human	genbank	54_36p	-1	reviewed	missense	c.662	p.G221V	0	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
CHD1	1105	genome.wustl.edu	36	5	98264662	98264662	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	98264662	98264662	C	A	SNP	CHD1	NM_001270	human	genbank	54_36p	-1	reviewed	missense	c.612	p.K204N	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Homeodomain-like"	-	no_errors
LOC100128140	100128140	genome.wustl.edu	36	17	507347	507347	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	507347	507347	T	C	SNP	LOC100128140	XR_037026	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
SERPINE3	647174	genome.wustl.edu	36	13	50819248	50819248	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	50819248	50819248	T	A	SNP	SERPINE3	NM_001101320	human	genbank	54_36p	1	validated	missense	c.577	p.S193T	1	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
ENSG00000210272	0	genome.wustl.edu	36	16	51926021	51926021	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	51926021	51926021	A	G	SNP	ENSG00000210272	ENST00000387537	human	ensembl	54_36p	1	novel	rna	NULL	NULL	0	-	-	-	pseudogene
LOC100130990	100130990	genome.wustl.edu	36	5	54190146	54190146	+	RNA	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	5	54190146	54190146	T	G	SNP	LOC100130990	XR_042331	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
OR2AP1	121129	genome.wustl.edu	36	12	54255095	54255095	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	12	54255095	54255095	G	A	SNP	OR2AP1	ENST00000321688	human	ensembl	54_36p	1	known	silent	c.630	p.V210	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4A13P	81330	genome.wustl.edu	36	11	54991325	54991325	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	54991325	54991325	G	T	SNP	OR4A13P	ENST00000314689	human	ensembl	54_36p	1	known	missense	c.218	p.G73V	0.01	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ENSG00000181943	0	genome.wustl.edu	36	11	55015968	55015968	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	55015968	55015968	G	T	SNP	ENSG00000181943	ENST00000314657	human	ensembl	54_36p	1	known	missense	c.674	p.C225F	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
MT1IP	644314	genome.wustl.edu	36	16	55269031	55269031	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	55269031	55269031	T	C	SNP	MT1IP	NR_003669	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0	-	-	-	pseudogene
LOC100131971	100131971	genome.wustl.edu	36	18	55579947	55579947	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	18	55579947	55579947	G	A	SNP	LOC100131971	XM_001722472	human	genbank	54_36p	1	model	missense	c.178	p.D60N	1	HMMPfam_Ribosomal_S26e	HMMPfam_Ribosomal_S26e	-	pseudogene
ENSG00000169164	0	genome.wustl.edu	36	X	55697965	55697965	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	55697965	55697965	T	A	SNP	ENSG00000169164	ENST00000347911	human	ensembl	54_36p	-1	known	missense	c.122	p.E41V	0	HMMPfam_GAGE	HMMPfam_GAGE	-	no_start_codon:no_stop_codon
OR5AK3P	81228	genome.wustl.edu	36	11	56495401	56495401	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56495401	56495401	T	C	SNP	OR5AK3P	ENST00000326876	human	ensembl	54_36p	1	known	missense	c.301	p.F101L	0.09	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5AK3P	81228	genome.wustl.edu	36	11	56495547	56495547	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56495547	56495547	T	C	SNP	OR5AK3P	ENST00000326876	human	ensembl	54_36p	1	known	silent	c.447	p.Y149	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5AK3P	81228	genome.wustl.edu	36	11	56495874	56495874	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	56495874	56495874	G	A	SNP	OR5AK3P	ENST00000326876	human	ensembl	54_36p	1	known	missense	c.774	p.M258I	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LOC100133234	100133234	genome.wustl.edu	36	8	56525236	56525236	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	56525236	56525236	G	A	SNP	LOC100133234	XR_038021	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
MIR298	100126296	genome.wustl.edu	36	20	56826717	56826717	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	20	56826717	56826717	C	G	SNP	MIRN298	ENST00000401212	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0	-	-	-	no_errors
SIGLEC14	100049587	genome.wustl.edu	36	19	56841005	56841005	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	56841005	56841005	G	A	SNP	SIGLEC14	NM_001098612	human	genbank	54_36p	-1	validated	missense	c.542	p.T181M	0	"superfamily_SSF48726,HMMPfam_ig"	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,PatternScan_IG_MHC"	-	no_errors
LOC644456	644456	genome.wustl.edu	36	2	58542553	58542553	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	58542553	58542553	G	A	SNP	LOC644456	XR_039438	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.89	-	-	-	pseudogene
ENSG00000210211	0	genome.wustl.edu	36	9	5880215	5880215	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	5880215	5880215	C	G	SNP	ENSG00000210211	ENST00000387476	human	ensembl	54_36p	1	novel	rna	NULL	NULL	0	-	-	-	pseudogene
MIR520D	574482	genome.wustl.edu	36	19	58915240	58915240	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58915240	58915240	G	A	SNP	MIRN520D	ENST00000385002	human	ensembl	54_36p	1	known	rna	NULL	NULL	0	-	-	-	no_errors
MIR518A2	574491	genome.wustl.edu	36	19	58934421	58934421	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58934421	58934421	G	T	SNP	MIRN518A2	ENST00000384966	human	ensembl	54_36p	1	known	rna	NULL	NULL	0	-	-	-	no_errors
MIR517C	574492	genome.wustl.edu	36	19	58936414	58936414	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58936414	58936414	C	G	SNP	MIRN517C	ENST00000385103	human	ensembl	54_36p	1	known	rna	NULL	NULL	0	-	-	-	no_errors
MIR1283-2	100302205	genome.wustl.edu	36	19	58953336	58953336	+	RNA	SNP	G	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	58953336	58953336	G	T	SNP	MIRN1283-2	ENST00000408621	human	ensembl	54_36p	1	known	rna	NULL	NULL	0	-	-	-	no_errors
ENSG00000204989	0	genome.wustl.edu	36	11	59016003	59016003	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	59016003	59016003	G	A	SNP	ENSG00000204989	ENST00000378245	human	ensembl	54_36p	1	known	missense	c.198	p.M66I	0.6	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
SIM1	6492	genome.wustl.edu	36	6	100945522	100945522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	100945522	100945522	C	G	SNP	SIM1	NM_005068	human	genbank	54_36p	-1	reviewed	missense	c.1737	p.E579D	1	HMMPfam_SIM_C	"HMMPfam_HLH,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_SIM_C"	-	no_errors
SIM1	6492	genome.wustl.edu	36	6	101002802	101002802	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	101002802	101002802	G	T	SNP	SIM1	NM_005068	human	genbank	54_36p	-1	reviewed	missense	c.791	p.T264N	1	"HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785"	"HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,HMMPfam_SIM_C,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785"	-	no_errors
ASCC3	10973	genome.wustl.edu	36	6	101161625	101161625	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	101161625	101161625	T	C	SNP	ASCC3	NM_006828	human	genbank	54_36p	-1	validated	missense	c.4846	p.I1616V	1	"superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_AAA,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMSmart_SEC63,HMMPfam_Sec63"	-	no_errors
ASCC3	10973	genome.wustl.edu	36	6	101272671	101272671	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	101272671	101272671	C	G	SNP	ASCC3	NM_006828	human	genbank	54_36p	-1	validated	splice_site	c.2079+1	e11+1	1	-	-	-	no_errors
LOC728098	728098	genome.wustl.edu	36	6	101444328	101444328	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	101444328	101444328	G	A	SNP	LOC728098	XR_015201	human	genbank	54_36p	1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
LOC442160	442160	genome.wustl.edu	36	6	10322307	10322307	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	10322307	10322307	T	C	SNP	LOC442160	XR_042339	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
HACE1	57531	genome.wustl.edu	36	6	105305031	105305031	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	105305031	105305031	C	G	SNP	HACE1	NM_020771	human	genbank	54_36p	-1	validated	missense	c.2221	p.V741L	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
PREP	5550	genome.wustl.edu	36	6	105843334	105843334	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	105843334	105843334	G	A	SNP	PREP	NM_002726	human	genbank	54_36p	-1	reviewed	silent	c.1446	p.P482	1	"superfamily_SSF53474,HMMPfam_Peptidase_S9"	"superfamily_Peptidase_S9A_N,HMMPfam_Peptidase_S9_N,superfamily_SSF53474,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER"	-	no_errors
PREP	5550	genome.wustl.edu	36	6	105878338	105878338	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	105878338	105878338	T	G	SNP	PREP	NM_002726	human	genbank	54_36p	-1	reviewed	splice_site	c.1214-2	e10-2	1	-	-	-	no_errors
GCNT2	2651	genome.wustl.edu	36	6	10637524	10637532	+	In_Frame_Del	DEL	GCGACGGAT	GCGACGGAT	-	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	GCGACGGAT	GCGACGGAT	GCGACGGAT	-	GCGACGGAT	GCGACGGAT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	10637524	10637532	GCGACGGAT	-	DEL	GCNT2	NM_145649	human	genbank	54_36p	1	reviewed	in_frame_del	c.394_402	p.TDA133in_frame_del	0.997:0.983:0.000:0.000:0.001:0.000:0.000:0.000:0.000	HMMPfam_Branch	HMMPfam_Branch	"(deletion:cds_exon[10637131,10638055])"	no_errors
AIM1	202	genome.wustl.edu	36	6	107074837	107074837	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	107074837	107074837	C	T	SNP	AIM1	NM_001624	human	genbank	54_36p	1	validated	missense	c.1837	p.L613F	0.01	NULL	"superfamily_G_crystallin_SF,HMMSmart_XTALbg,HMMPfam_Crystall,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin"	-	no_errors
AIM1	202	genome.wustl.edu	36	6	107075882	107075907	+	Frame_Shift_Del	DEL	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	-	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	-	AGGCTAATCATATTGAAAGTGTTATT	AGGCTAATCATATTGAAAGTGTTATT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	107075882	107075907	AGGCTAATCATATTGAAAGTGTTATT	-	DEL	AIM1	NM_001624	human	genbank	54_36p	1	validated	frame_shift_del	c.2882_2907	p.A962fs	0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.060:0.061:0.033:0.006:0.004:0.001:0.001:0.001:0.000:0.000:0.004:0.002	NULL	"HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,superfamily_G_crystallin_SF"	"(deletion:cds_exon[107073699,107076021])"	no_errors
BEND3	57673	genome.wustl.edu	36	6	107498431	107498431	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	107498431	107498431	C	T	SNP	BEND3	NM_001080450	human	genbank	54_36p	-1	provisional	silent	c.657	p.L219	1	NULL	HMMPfam_BEN	-	no_errors
PDSS2	57107	genome.wustl.edu	36	6	107673480	107673480	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	107673480	107673480	C	G	SNP	PDSS2	NM_020381	human	genbank	54_36p	-1	validated	missense	c.667	p.V223L	1	superfamily_Terpenoid synthases	superfamily_Terpenoid synthases	-	no_errors
SOBP	55084	genome.wustl.edu	36	6	108061758	108061758	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	108061758	108061758	C	A	SNP	SOBP	NM_018013	human	genbank	54_36p	1	validated	missense	c.1017	p.N339K	1	NULL	NULL	-	no_errors
LOC442240	442240	genome.wustl.edu	36	6	109214492	109214492	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	109214492	109214492	G	A	SNP	LOC442240	XR_016496	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
ARMC2	84071	genome.wustl.edu	36	6	109304169	109304169	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	109304169	109304169	T	A	SNP	ARMC2	NM_032131	human	genbank	54_36p	1	validated	missense	c.594	p.D198E	0.05	NULL	superfamily_ARM-type_fold	-	no_errors
CEP57L1	285753	genome.wustl.edu	36	6	109587359	109587359	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	109587359	109587359	G	A	SNP	C6orf182	NM_001083535	human	genbank	54_36p	1	validated	splice_site	c.1016+1	e8+1	1	-	-	-	no_errors
AKD1	221264	genome.wustl.edu	36	6	109961219	109961219	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	109961219	109961219	T	C	SNP	AKD1	NM_001001706	human	genbank	54_36p	-1	provisional	silent	c.735	p.E245	0.29	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_YHS,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK"	-	no_errors
SYCP2L	221711	genome.wustl.edu	36	6	11006314	11006314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	11006314	11006314	G	C	SNP	SYCP2L	NM_001040274	human	genbank	54_36p	1	provisional	missense	c.421	p.D141H	0.97	NULL	NULL	-	no_errors
AKD1	221264	genome.wustl.edu	36	6	110102103	110102103	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	110102103	110102103	G	T	SNP	AKD2	NM_145025	human	genbank	54_36p	-1	validated	missense	c.172	p.R58S	0.99	"superfamily_SSF52540,HMMPfam_ADK"	"superfamily_SSF52540,HMMPfam_ADK"	-	no_errors
RPF2	84154	genome.wustl.edu	36	6	111436015	111436023	+	In_Frame_Del	DEL	CTAAAAAGT	CTAAAAAGT	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	CTAAAAAGT	CTAAAAAGT	CTAAAAAGT	-	CTAAAAAGT	CTAAAAAGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	111436015	111436023	CTAAAAAGT	-	DEL	BXDC1	NM_032194	human	genbank	54_36p	1	validated	in_frame_del	c.475_483	p.KSL160in_frame_del	0.968:0.981:0.966:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Brix	HMMPfam_Brix	"(deletion:cds_exon[111435934,111436033])"	no_errors
KIAA1919	91749	genome.wustl.edu	36	6	111694142	111694142	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	111694142	111694142	C	T	SNP	KIAA1919	NM_153369	human	genbank	54_36p	1	validated	silent	c.684	p.N228	0	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
KIAA1919	91749	genome.wustl.edu	36	6	111694599	111694599	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	111694599	111694599	C	A	SNP	KIAA1919	NM_153369	human	genbank	54_36p	1	validated	missense	c.1141	p.P381T	0.66	superfamily_MFS general substrate transporter	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
HERV-FRD	405754	genome.wustl.edu	36	6	11212762	11212762	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	11212762	11212762	G	C	SNP	HERV-FRD	NM_207582	human	genbank	54_36p	-1	provisional	silent	c.768	p.V256	0	NULL	HMMPfam_TLV_coat	-	no_errors
HERV-FRD	405754	genome.wustl.edu	36	6	11213309	11213309	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	11213309	11213309	A	C	SNP	HERV-FRD	NM_207582	human	genbank	54_36p	-1	provisional	missense	c.221	p.I74S	0	NULL	HMMPfam_TLV_coat	-	no_errors
LAMA4	3910	genome.wustl.edu	36	6	112550011	112550011	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	112550011	112550011	G	A	SNP	LAMA4	NM_001105206	human	genbank	54_36p	-1	reviewed	silent	c.4374	p.H1458	1	superfamily_Concanavalin A-like lectins/glucanases	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_LAM_1,PatternScan_EGF_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	-	no_errors
LAMA4	3910	genome.wustl.edu	36	6	112682024	112682040	+	Frame_Shift_Del	DEL	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	-	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	-	GCCAGGCTGAGCTCAAA	GCCAGGCTGAGCTCAAA	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	112682024	112682040	GCCAGGCTGAGCTCAAA	-	DEL	LAMA4	NM_001105206	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.22_6	p.S4fs	0.491:0.957:0.996:1.000:1.000:1.000:0.999:0.998:1.000:1.000:1.000:0.999:0.999:1.000:0.999:1.000:1.000	NULL	"HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin"	"(deletion:cds_exon[112681851,112682045])"	no_errors
HS3ST5	222537	genome.wustl.edu	36	6	114486016	114486016	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	114486016	114486016	G	T	SNP	HS3ST5	NM_153612	human	genbank	54_36p	-1	validated	missense	c.139	p.L47M	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
FRK	2444	genome.wustl.edu	36	6	116370338	116370338	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	116370338	116370338	G	A	SNP	FRK	NM_002031	human	genbank	54_36p	-1	reviewed	missense	c.1450	p.R484C	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
FRK	2444	genome.wustl.edu	36	6	116431838	116431838	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	116431838	116431838	T	C	SNP	FRK	NM_002031	human	genbank	54_36p	-1	reviewed	missense	c.361	p.I121V	1	"HMMPfam_SH2,HMMSmart_SH2,superfamily_SH3,superfamily_SSF55550"	"HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF55550"	-	no_errors
RWDD1	51389	genome.wustl.edu	36	6	117020913	117020913	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117020913	117020913	C	A	SNP	RWDD1	NM_015952	human	genbank	54_36p	1	validated	missense	c.688	p.P230T	1	NULL	"superfamily_UBC-like,HMMPfam_RWD,HMMSmart_SM00591"	-	no_errors
RWDD1	51389	genome.wustl.edu	36	6	117020914	117020914	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117020914	117020914	C	A	SNP	RWDD1	NM_015952	human	genbank	54_36p	1	validated	missense	c.689	p.P230Q	1	NULL	"HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like"	-	no_errors
GPRC6A	222545	genome.wustl.edu	36	6	117220057	117220057	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117220057	117220057	T	G	SNP	GPRC6A	NM_148963	human	genbank	54_36p	-1	validated	silent	c.2722	p.R908	0	NULL	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3"	-	no_errors
GPRC6A	222545	genome.wustl.edu	36	6	117228521	117228521	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117228521	117228521	A	T	SNP	GPRC6A	NM_148963	human	genbank	54_36p	-1	validated	silent	c.1467	p.T489	0.6	superfamily_Periplasmic binding protein-like I	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_Periplasmic binding protein-like I"	-	no_errors
ROS1	6098	genome.wustl.edu	36	6	117738055	117738055	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117738055	117738055	C	T	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	missense	c.6316	p.A2106T	0.96	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF63825,HMMSmart_LY,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
ROS1	6098	genome.wustl.edu	36	6	117817288	117817288	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117817288	117817288	G	T	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	silent	c.1677	p.G559	0	"HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	"HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825"	-	no_errors
ROS1	6098	genome.wustl.edu	36	6	117822073	117822073	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117822073	117822073	G	T	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	missense	c.1109	p.S370Y	1	"HMMSmart_LY,superfamily_SSF63825"	"HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825"	-	no_errors
DCBLD1	285761	genome.wustl.edu	36	6	117960220	117960220	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	117960220	117960220	G	T	SNP	DCBLD1	NM_173674	human	genbank	54_36p	1	provisional	silent	c.690	p.G230	0.87	"superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1"	-	no_errors
C6orf105	84830	genome.wustl.edu	36	6	11831642	11831643	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	GC	GC	GC	AT	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	11831642	11831643	GC	AT	DNP	C6orf105	NM_032744	human	genbank	54_36p	-1	validated	missense	c.584_583	p.A195I	0.018:0.002	HMMPfam_Far-17a_AIG1	HMMPfam_Far-17a_AIG1	-	no_errors
MCM9	254394	genome.wustl.edu	36	6	119280502	119280502	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	119280502	119280502	G	A	SNP	MCM9	NM_153255	human	genbank	54_36p	-1	reviewed	missense	c.827	p.S276L	0.05	HMMSmart_MCM	"superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540"	-	no_errors
FAM184A	79632	genome.wustl.edu	36	6	119366432	119366432	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	119366432	119366432	C	G	SNP	FAM184A	NM_024581	human	genbank	54_36p	-1	validated	missense	c.1870	p.E624Q	1	NULL	NULL	-	no_errors
C6orf170	221322	genome.wustl.edu	36	6	121443618	121443618	+	Nonstop_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	121443618	121443618	A	T	SNP	C6orf170	NM_152730	human	genbank	54_36p	-1	validated	nonstop	c.3772	p.*1258K	0.94	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
GJA1	2697	genome.wustl.edu	36	6	121810557	121810557	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	121810557	121810557	G	C	SNP	GJA1	NM_000165	human	genbank	54_36p	1	reviewed	missense	c.865	p.V289L	0.98	NULL	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin43"	-	no_errors
HIVEP1	3096	genome.wustl.edu	36	6	12230760	12230760	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	12230760	12230760	G	A	SNP	HIVEP1	NM_002114	human	genbank	54_36p	1	validated	missense	c.2746	p.G916R	0.07	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HIVEP1	3096	genome.wustl.edu	36	6	12271558	12271558	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	12271558	12271558	A	C	SNP	HIVEP1	NM_002114	human	genbank	54_36p	1	validated	silent	c.7035	p.A2345	0	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
TRDN	10345	genome.wustl.edu	36	6	123911363	123911363	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	123911363	123911363	A	T	SNP	TRDN	NM_006073	human	genbank	54_36p	-1	validated	nonsense	c.326	p.L109*	1	HMMPfam_Triadin	HMMPfam_Triadin	-	no_errors
TRMT11	60487	genome.wustl.edu	36	6	126358864	126358864	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	126358864	126358864	G	T	SNP	TRMT11	NM_001031712	human	genbank	54_36p	1	validated	missense	c.197	p.R66L	1	NULL	"HMMPfam_UPF0020,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_N6_MTASE"	-	no_errors
THEMIS	387357	genome.wustl.edu	36	6	128263714	128263714	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	128263714	128263714	C	A	SNP	C6orf190	NM_001010923	human	genbank	54_36p	-1	validated	missense	c.57	p.R19S	0.94	NULL	NULL	-	no_errors
PTPRK	5796	genome.wustl.edu	36	6	128339552	128339552	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	128339552	128339552	A	T	SNP	PTPRK	NM_002844	human	genbank	54_36p	-1	validated	silent	c.3912	p.S1304	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRK	5796	genome.wustl.edu	36	6	128547279	128547279	+	Nonsense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	6	128547279	128547279	T	A	SNP	PTPRK	NM_002844	human	genbank	54_36p	-1	validated	nonsense	c.1153	p.K385*	1	superfamily_Fibronectin type III	###############################################################################################################################################################################################################################################################	-	no_errors
LOC643778	643778	genome.wustl.edu	36	6	129521075	129521075	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	129521075	129521075	A	G	SNP	LOC643778	XR_017181	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LAMA2	3908	genome.wustl.edu	36	6	129754469	129754469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	129754469	129754469	G	A	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.5212	p.E1738K	1	"superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA2	3908	genome.wustl.edu	36	6	129844113	129844113	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	129844113	129844113	G	A	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.7585	p.V2529I	1	superfamily_ConA_like_lec_gl	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA2	3908	genome.wustl.edu	36	6	129868037	129868037	+	Splice_Site	SNP	G	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	129868037	129868037	G	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	splice_site	c.8548-1	e61-1	1	-	-	-	no_errors
L3MBTL3	84456	genome.wustl.edu	36	6	130418077	130418077	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	130418077	130418077	G	A	SNP	L3MBTL3	NM_032438	human	genbank	54_36p	1	validated	silent	c.651	p.S217	0	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
L3MBTL3	84456	genome.wustl.edu	36	6	130429263	130429263	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	130429263	130429263	G	A	SNP	L3MBTL3	NM_032438	human	genbank	54_36p	1	validated	missense	c.937	p.A313T	1	"HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT"	"HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,superfamily_CCHHC domain,superfamily_Tudor/PWWP/MBT"	-	no_errors
L3MBTL3	84456	genome.wustl.edu	36	6	130455630	130455630	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	130455630	130455630	A	G	SNP	L3MBTL3	NM_032438	human	genbank	54_36p	1	validated	silent	c.1566	p.A522	1	"HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT"	"HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,superfamily_CCHHC domain,superfamily_Tudor/PWWP/MBT"	-	no_errors
AKAP7	9465	genome.wustl.edu	36	6	131644385	131644385	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	131644385	131644385	C	G	SNP	AKAP7	NM_016377	human	genbank	54_36p	1	reviewed	silent	c.807	p.P269	0.88	HMMPfam_AKAP7_RIRII_bdg	"HMMPfam_AKAP7_NLS,superfamily_LigT-like,HMMPfam_AKAP7_RIRII_bdg"	-	no_errors
ENPP3	5169	genome.wustl.edu	36	6	132037101	132037101	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132037101	132037101	G	A	SNP	ENPP3	NM_005021	human	genbank	54_36p	1	reviewed	nonsense	c.749	p.W250*	1	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	"HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest,superfamily_SSF54060,HMMSmart_NUC"	-	no_errors
ENPP1	5167	genome.wustl.edu	36	6	132212840	132212840	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132212840	132212840	C	T	SNP	ENPP1	NM_006208	human	genbank	54_36p	1	reviewed	missense	c.175	p.R59C	1	"HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain"	"HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477"	-	no_errors
ENPP1	5167	genome.wustl.edu	36	6	132253282	132253282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132253282	132253282	G	C	SNP	ENPP1	NM_006208	human	genbank	54_36p	1	reviewed	missense	c.2560	p.E854Q	1	"HMMSmart_SM00477,superfamily_His-Me finger endonucleases"	"HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,HMMSmart_SM00477,HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like,superfamily_His-Me finger endonucleases,superfamily_Somatomedin B domain"	-	no_errors
TAAR6	319100	genome.wustl.edu	36	6	132933914	132933914	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	132933914	132933914	G	T	SNP	TAAR6	NM_175067	human	genbank	54_36p	1	provisional	missense	c.761	p.R254I	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
VNN1	8876	genome.wustl.edu	36	6	133046057	133046057	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	133046057	133046057	G	C	SNP	VNN1	NM_004666	human	genbank	54_36p	-1	reviewed	nonsense	c.1457	p.S486*	0	NULL	"superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase"	-	no_errors
C6orf192	116843	genome.wustl.edu	36	6	133142141	133142141	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	133142141	133142141	C	G	SNP	C6orf192	NM_052831	human	genbank	54_36p	-1	validated	missense	c.754	p.G252R	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
MYB	4602	genome.wustl.edu	36	6	135563199	135563199	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	135563199	135563199	G	C	SNP	MYB	NM_005375	human	genbank	54_36p	1	validated	missense	c.1540	p.E514Q	0.96	HMMPfam_Cmyb_C	"HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Cmyb_C"	-	no_errors
BCLAF1	9774	genome.wustl.edu	36	6	136639003	136639003	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	136639003	136639003	A	T	SNP	BCLAF1	NM_014739	human	genbank	54_36p	-1	reviewed	missense	c.1353	p.D451E	1	NULL	NULL	-	no_errors
MAP3K5	4217	genome.wustl.edu	36	6	137061319	137061319	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	137061319	137061319	C	G	SNP	MAP3K5	NM_005923	human	genbank	54_36p	-1	reviewed	splice_site	c.806+1	e4+1	1	-	-	-	no_errors
SLC35D3	340146	genome.wustl.edu	36	6	137287256	137287256	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	137287256	137287256	G	C	SNP	SLC35D3	NM_001008783	human	genbank	54_36p	1	provisional	missense	c.980	p.G327A	1	NULL	HMMPfam_UAA	-	no_errors
RNF182	221687	genome.wustl.edu	36	6	14086034	14086034	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	14086034	14086034	T	C	SNP	RNF182	NM_152737	human	genbank	54_36p	1	provisional	silent	c.705	p.V235	0.9	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
GPR126	57211	genome.wustl.edu	36	6	142730653	142730653	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	142730653	142730653	T	G	SNP	GPR126	NM_198569	human	genbank	54_36p	1	validated	missense	c.358	p.F120V	1	"superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB"	"superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_SSF81321,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
HIVEP2	3097	genome.wustl.edu	36	6	143132492	143132492	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	143132492	143132492	G	C	SNP	HIVEP2	NM_006734	human	genbank	54_36p	-1	provisional	missense	c.5077	p.L1693V	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
HIVEP2	3097	genome.wustl.edu	36	6	143137099	143137099	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	143137099	143137099	C	T	SNP	HIVEP2	NM_006734	human	genbank	54_36p	-1	provisional	missense	c.470	p.S157N	0.98	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
PEX3	8504	genome.wustl.edu	36	6	143834278	143834278	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	143834278	143834278	T	A	SNP	PEX3	NM_003630	human	genbank	54_36p	1	reviewed	missense	c.522	p.D174E	1	HMMPfam_Peroxin-3	HMMPfam_Peroxin-3	-	no_errors
PEX3	8504	genome.wustl.edu	36	6	143834393	143834393	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	143834393	143834393	C	G	SNP	PEX3	NM_003630	human	genbank	54_36p	1	reviewed	missense	c.530	p.T177R	1	HMMPfam_Peroxin-3	HMMPfam_Peroxin-3	-	no_errors
UTRN	7402	genome.wustl.edu	36	6	144848293	144848293	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	144848293	144848293	T	G	SNP	UTRN	NM_007124	human	genbank	54_36p	1	reviewed	missense	c.3767	p.M1256R	0.06	"superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC"	###############################################################################################################################################################################################################################################################	-	no_errors
FBXO30	84085	genome.wustl.edu	36	6	146168968	146168968	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	146168968	146168968	G	A	SNP	FBXO30	NM_032145	human	genbank	54_36p	-1	reviewed	silent	c.267	p.C89	1	superfamily_Traf_like	"superfamily_Traf_like,superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX"	-	no_errors
UST	10090	genome.wustl.edu	36	6	149384304	149384304	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	149384304	149384304	G	C	SNP	UST	NM_005715	human	genbank	54_36p	1	validated	missense	c.931	p.D311H	1	HMMPfam_HS2ST	HMMPfam_HS2ST	-	no_errors
LATS1	9113	genome.wustl.edu	36	6	150045932	150045932	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	150045932	150045932	T	C	SNP	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	silent	c.1986	p.K662	1	NULL	"superfamily_UBA-like,HMMPfam_UBA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C"	-	no_errors
LATS1	9113	genome.wustl.edu	36	6	150046401	150046401	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	150046401	150046401	G	C	SNP	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	missense	c.1517	p.P506R	1	NULL	"HMMPfam_UBA,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_UBA-like,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
PCMT1	5110	genome.wustl.edu	36	6	150134043	150134043	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	150134043	150134043	C	T	SNP	PCMT1	NM_005389	human	genbank	54_36p	1	provisional	silent	c.108	p.D36	1	"HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_PCMT"	-	no_errors
IYD	389434	genome.wustl.edu	36	6	150752225	150752225	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	150752225	150752225	C	A	SNP	IYD	NM_203395	human	genbank	54_36p	1	validated	missense	c.223	p.P75T	0.97	NULL	"superfamily_FMN-dependent nitroreductase-like,HMMPfam_Nitroreductase"	-	no_errors
PLEKHG1	57480	genome.wustl.edu	36	6	151096794	151096794	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	151096794	151096794	C	G	SNP	PLEKHG1	NM_001029884	human	genbank	54_36p	1	provisional	nonsense	c.284	p.S95*	0	superfamily_DBL homology domain (DH-domain)	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PLEKHG1	57480	genome.wustl.edu	36	6	151131503	151131503	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	151131503	151131503	C	T	SNP	PLEKHG1	NM_001029884	human	genbank	54_36p	1	provisional	missense	c.448	p.P150S	1	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
MTHFD1L	25902	genome.wustl.edu	36	6	151372769	151372769	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	151372769	151372769	G	C	SNP	MTHFD1L	NM_015440	human	genbank	54_36p	1	validated	missense	c.2247	p.M749I	1	"HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_FTHFS_2"	###############################################################################################################################################################################################################################################################	-	no_errors
MTHFD1L	25902	genome.wustl.edu	36	6	151378379	151378379	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	151378379	151378379	G	C	SNP	MTHFD1L	NM_015440	human	genbank	54_36p	1	validated	missense	c.2443	p.E815Q	0.96	"HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
MTHFD1L	25902	genome.wustl.edu	36	6	151399838	151399871	+	Frame_Shift_Del	DEL	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	-	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	151399838	151399871	TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA	-	DEL	MTHFD1L	NM_015440	human	genbank	54_36p	1	validated	frame_shift_del	c.2739_2772	p.L914fs	0.999:1.000:0.999:0.954:1.000:1.000:1.000:1.000:0.993:0.029:0.003:0.008:0.034:0.797:0.979:0.975:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.153:0.895:0.886:0.582:0.997:1.000:0.989	"HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[151399794,151399946])"	no_errors
SYNE1	23345	genome.wustl.edu	36	6	152725072	152725072	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	152725072	152725072	C	A	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	nonsense	c.10225	p.E3409*	1	superfamily_Spectrin repeat	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH"	-	no_errors
MYCT1	80177	genome.wustl.edu	36	6	153084576	153084576	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	153084576	153084576	T	A	SNP	MYCT1	NM_025107	human	genbank	54_36p	1	validated	missense	c.203	p.L68H	0.5	NULL	NULL	-	no_errors
CNKSR3	154043	genome.wustl.edu	36	6	154785390	154785390	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	154785390	154785390	G	T	SNP	CNKSR3	NM_173515	human	genbank	54_36p	-1	validated	missense	c.887	p.S296Y	0.95	superfamily_PDZ	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,HMMPfam_CRIC_ras_sig,HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_DUF1170"	-	no_errors
TIAM2	26230	genome.wustl.edu	36	6	155492159	155492159	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	155492159	155492159	C	T	SNP	TIAM2	NM_012454	human	genbank	54_36p	1	reviewed	missense	c.110	p.A37V	0.95	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1"	-	no_errors
JARID2	3720	genome.wustl.edu	36	6	15595579	15595579	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	15595579	15595579	G	T	SNP	JARID2	NM_004973	human	genbank	54_36p	1	reviewed	nonsense	c.733	p.E245*	1	NULL	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2"	-	no_errors
ZDHHC14	79683	genome.wustl.edu	36	6	157994585	157994585	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	157994585	157994585	C	G	SNP	ZDHHC14	NM_024630	human	genbank	54_36p	1	provisional	missense	c.1006	p.Q336E	1	NULL	HMMPfam_zf-DHHC	-	no_errors
TMEM181	57583	genome.wustl.edu	36	6	158922008	158922008	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	158922008	158922008	G	T	SNP	TMEM181	NM_020823	human	genbank	54_36p	1	validated	missense	c.572	p.S191I	0.93	NULL	NULL	-	no_errors
FNDC1	84624	genome.wustl.edu	36	6	159573524	159573524	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	159573524	159573524	G	A	SNP	FNDC1	NM_032532	human	genbank	54_36p	1	validated	missense	c.1990	p.A664T	0	NULL	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
FNDC1	84624	genome.wustl.edu	36	6	159590077	159590077	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	159590077	159590077	G	A	SNP	FNDC1	NM_032532	human	genbank	54_36p	1	validated	silent	c.4707	p.T1569	0.17	NULL	"HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
IGF2R	3482	genome.wustl.edu	36	6	160424983	160424983	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	160424983	160424983	C	G	SNP	IGF2R	NM_000876	human	genbank	54_36p	1	reviewed	missense	c.5845	p.R1949G	0.92	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR"	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1"	-	no_errors
SLC22A3	6581	genome.wustl.edu	36	6	160792073	160792073	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	160792073	160792073	C	T	SNP	SLC22A3	NM_021977	human	genbank	54_36p	1	reviewed	missense	c.1666	p.L556F	0.22	NULL	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160930625	160930625	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	160930625	160930625	G	T	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	silent	c.3897	p.S1299	0.64	"HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like"	"HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
LPA	4018	genome.wustl.edu	36	6	160976228	160976228	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	160976228	160976228	G	A	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	missense	c.992	p.T331M	0.04	"HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like"	"HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
MAP3K4	4216	genome.wustl.edu	36	6	161433095	161433095	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	161433095	161433095	A	G	SNP	MAP3K4	NM_005922	human	genbank	54_36p	1	reviewed	missense	c.3199	p.I1067V	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CCR6	1235	genome.wustl.edu	36	6	167469736	167469736	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	167469736	167469736	G	A	SNP	CCR6	NM_004367	human	genbank	54_36p	1	reviewed	missense	c.28	p.D10N	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MLLT4	4301	genome.wustl.edu	36	6	168094982	168094982	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	168094982	168094982	A	G	SNP	MLLT4	NM_001040001	human	genbank	54_36p	1	validated	missense	c.4075	p.I1359V	0.01	NULL	"HMMPfam_RA,HMMSmart_RA,superfamily_SSF54236,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
MLLT4	4301	genome.wustl.edu	36	6	168095207	168095207	+	Nonsense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	168095207	168095207	A	T	SNP	MLLT4	NM_001040001	human	genbank	54_36p	1	validated	nonsense	c.4300	p.R1434*	0.13	NULL	"HMMPfam_RA,HMMSmart_RA,HMMPfam_FHA,HMMSmart_FHA,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SMAD_FHA,HMMPfam_DIL,superfamily_SSF54236"	-	no_errors
THBS2	7058	genome.wustl.edu	36	6	169364300	169364301	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	169364300	169364301	-	C	INS	THBS2	NM_003247	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.3190_3189	p.S1063fs	1.000:0.997	"superfamily_ConA_like_lec_gl,HMMPfam_TSP_C"	###############################################################################################################################################################################################################################################################	-	no_errors
C6orf70	55780	genome.wustl.edu	36	6	169921305	169921306	+	Missense_Mutation	DNP	GC	AG	AG	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GC	GC	AG	AG	GC	GC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	169921305	169921306	GC	AG	DNP	C6orf70	NM_018341	human	genbank	54_36p	1	validated	missense	c.1842_1843	p.Q615E	1.000:1.000	NULL	NULL	-	no_errors
DLL1	28514	genome.wustl.edu	36	6	170439310	170439310	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	170439310	170439310	A	G	SNP	DLL1	NM_005618	human	genbank	54_36p	-1	reviewed	silent	c.612	p.C204	0.97	"HMMPfam_DSL,HMMSmart_SM00051"	"HMMPfam_MNNL,HMMPfam_DSL,HMMSmart_SM00051,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_CA"	-	no_errors
FAM120B	84498	genome.wustl.edu	36	6	170555583	170555584	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	-	-	-	T	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	170555583	170555584	-	T	INS	FAM120B	NM_032448	human	genbank	54_36p	1	provisional	frame_shift_ins	c.2713_2714	p.D905fs	0.913:0.942	NULL	"superfamily_PIN domain-like,PatternScan_FGGY_KINASES_1"	-	no_errors
RBM24	221662	genome.wustl.edu	36	6	17392921	17392921	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	17392921	17392921	G	A	SNP	RBM24	NM_153020	human	genbank	54_36p	1	validated	missense	c.212	p.G71E	1	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
CAP2	10486	genome.wustl.edu	36	6	17651147	17651147	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	17651147	17651147	G	T	SNP	CAP2	NM_006366	human	genbank	54_36p	1	reviewed	missense	c.1103	p.G368V	1	"superfamily_C-terminal domain of adenylylcyclase associated protein,HMMPfam_CAP_C,HMMSmart_SM00673"	"HMMPfam_CAP_N,PatternScan_CAP_1,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,PatternScan_ADH_IRON_2,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMPfam_CAP_C,HMMSmart_SM00673,PatternScan_CAP_2"	-	no_errors
KIF13A	63971	genome.wustl.edu	36	6	17896057	17896057	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	17896057	17896057	C	G	SNP	KIF13A	NM_022113	human	genbank	54_36p	-1	validated	missense	c.3290	p.R1097T	1	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA"	-	no_errors
KIF13A	63971	genome.wustl.edu	36	6	17942225	17942225	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	17942225	17942225	T	C	SNP	KIF13A	NM_022113	human	genbank	54_36p	-1	validated	silent	c.1212	p.K404	1	NULL	"HMMPfam_FHA,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CDKAL1	54901	genome.wustl.edu	36	6	20954307	20954307	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	20954307	20954307	T	A	SNP	CDKAL1	NM_017774	human	genbank	54_36p	1	validated	missense	c.661	p.C221S	1	"superfamily_Radical SAM enzymes,HMMSmart_SM00729,PatternScan_UPF0004,HMMPfam_Radical_SAM"	"HMMPfam_UPF0004,superfamily_Radical SAM enzymes,HMMSmart_SM00729,PatternScan_UPF0004,HMMPfam_Radical_SAM,HMMPfam_TRAM"	-	no_errors
GPLD1	2822	genome.wustl.edu	36	6	24570966	24570966	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	24570966	24570966	T	A	SNP	GPLD1	NM_001503	human	genbank	54_36p	-1	reviewed	silent	c.858	p.A286	0	NULL	"HMMSmart_SM00191,HMMPfam_FG-GAP,superfamily_Integrin alpha N-terminal domain"	-	no_errors
GPLD1	2822	genome.wustl.edu	36	6	24570970	24570970	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	24570970	24570970	A	G	SNP	GPLD1	NM_001503	human	genbank	54_36p	-1	reviewed	missense	c.854	p.I285T	0.91	NULL	"HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain"	-	no_errors
KIAA0319	9856	genome.wustl.edu	36	6	24684575	24684575	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	24684575	24684575	C	G	SNP	KIAA0319	NM_014809	human	genbank	54_36p	-1	validated	missense	c.1734	p.Q578H	1	"superfamily_PKD domain,HMMSmart_SM00089"	"HMMSmart_SM00765,HMMSmart_SM00060,HMMSmart_SM00089,superfamily_PKD domain"	-	no_errors
TDP2	51567	genome.wustl.edu	36	6	24774777	24774777	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	24774777	24774777	G	T	SNP	TTRAP	NM_016614	human	genbank	54_36p	-1	reviewed	missense	c.207	p.S69R	0	NULL	"superfamily_UBA_like,superfamily_Exo_endo_phos,HMMPfam_Exo_endo_phos"	-	no_errors
LRRC16A	55604	genome.wustl.edu	36	6	25714415	25714415	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	25714415	25714415	C	T	SNP	LRRC16A	NM_017640	human	genbank	54_36p	1	validated	missense	c.3647	p.S1216F	1	NULL	superfamily_SSF52047	-	no_errors
SCGN	10590	genome.wustl.edu	36	6	25778216	25778216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	25778216	25778216	G	A	SNP	SCGN	NM_006998	human	genbank	54_36p	1	reviewed	missense	c.404	p.R135Q	1	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
SLC17A3	10786	genome.wustl.edu	36	6	25970218	25970218	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	25970218	25970218	A	T	SNP	SLC17A3	NM_001098486	human	genbank	54_36p	-1	validated	missense	c.322	p.S108T	0.73	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
HIST1H3A	8350	genome.wustl.edu	36	6	26128756	26128756	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26128756	26128756	G	T	SNP	HIST1H3A	NM_003529	human	genbank	54_36p	1	reviewed	missense	c.60	p.Q20H	1	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H3B	8358	genome.wustl.edu	36	6	26140117	26140117	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26140117	26140117	C	G	SNP	HIST1H3B	NM_003537	human	genbank	54_36p	-1	reviewed	missense	c.151	p.E51Q	1	"superfamily_Histone-fold,HMMSmart_SM00428"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H1C	3006	genome.wustl.edu	36	6	26163994	26163994	+	Nonstop_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26163994	26163994	C	G	SNP	HIST1H1C	NM_005319	human	genbank	54_36p	-1	reviewed	nonstop	c.642	p.*214Y	0.68	NULL	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,HMMPfam_Linker_histone"	-	no_errors
HIST1H1C	3006	genome.wustl.edu	36	6	26164625	26164625	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26164625	26164625	G	C	SNP	HIST1H1C	NM_005319	human	genbank	54_36p	-1	reviewed	missense	c.11	p.T4S	0.98	NULL	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain"	-	no_errors
HIST1H2BC	8347	genome.wustl.edu	36	6	26232094	26232094	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26232094	26232094	C	A	SNP	HIST1H2BC	NM_003526	human	genbank	54_36p	-1	reviewed	missense	c.18	p.K6N	0.99	superfamily_Histone-fold	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST1H2BD	3017	genome.wustl.edu	36	6	26266730	26266730	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26266730	26266730	C	G	SNP	HIST1H2BD	NM_021063	human	genbank	54_36p	1	reviewed	silent	c.354	p.A118	1	"superfamily_Histone-fold,HMMSmart_SM00427"	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST1H2BG	8339	genome.wustl.edu	36	6	26324802	26324802	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26324802	26324802	T	C	SNP	HIST1H2BG	NM_003518	human	genbank	54_36p	-1	reviewed	missense	c.49	p.K17E	1	superfamily_Histone-fold	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST1H2BH	8345	genome.wustl.edu	36	6	26359889	26359889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26359889	26359889	C	T	SNP	HIST1H2BH	NM_003524	human	genbank	54_36p	1	reviewed	missense	c.32	p.P11L	1	superfamily_Histone-fold	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST1H4H	8365	genome.wustl.edu	36	6	26393660	26393660	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26393660	26393660	G	A	SNP	HIST1H4H	NM_003543	human	genbank	54_36p	-1	reviewed	missense	c.47	p.A16V	1	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
HIST1H4H	8365	genome.wustl.edu	36	6	26393702	26393702	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26393702	26393702	G	C	SNP	HIST1H4H	NM_003543	human	genbank	54_36p	-1	reviewed	missense	c.5	p.S2C	1	superfamily_Histone-fold	"HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold,PatternScan_HISTONE_H4"	-	no_errors
BTN1A1	696	genome.wustl.edu	36	6	26610033	26610033	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	26610033	26610033	C	A	SNP	BTN1A1	NM_001732	human	genbank	54_36p	1	validated	missense	c.316	p.R106S	0	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
HIST1H2AG	8969	genome.wustl.edu	36	6	27208837	27208837	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	27208837	27208837	G	T	SNP	HIST1H2AG	NM_021064	human	genbank	54_36p	1	reviewed	missense	c.8	p.G3V	1	"superfamily_Histone-fold,HMMSmart_SM00414"	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
PRSS16	10279	genome.wustl.edu	36	6	27324878	27324878	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	27324878	27324878	C	T	SNP	PRSS16	NM_005865	human	genbank	54_36p	1	reviewed	missense	c.358	p.P120S	0.8	"HMMPfam_Peptidase_S28,superfamily_SSF53474"	"HMMPfam_Peptidase_S28,superfamily_SSF53474"	-	no_errors
HIST1H3H	8357	genome.wustl.edu	36	6	27885855	27885855	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	27885855	27885855	C	G	SNP	HIST1H3H	NM_003536	human	genbank	54_36p	1	reviewed	missense	c.25	p.R9G	1	superfamily_Histone-fold	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H4J	8363	genome.wustl.edu	36	6	27900168	27900168	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	27900168	27900168	G	T	SNP	HIST1H4J	NM_021968	human	genbank	54_36p	1	reviewed	missense	c.287	p.R96L	1	superfamily_Histone-fold	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
HIST1H4L	8368	genome.wustl.edu	36	6	27949195	27949195	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	27949195	27949195	C	T	SNP	HIST1H4L	NM_003546	human	genbank	54_36p	-1	reviewed	missense	c.73	p.D25N	1	"superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
HIST1H2AM	8336	genome.wustl.edu	36	6	27968906	27968906	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	27968906	27968906	T	C	SNP	HIST1H2AM	NM_003514	human	genbank	54_36p	-1	reviewed	missense	c.1	p.M1V	0.99	NULL	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
HIST1H2BO	8348	genome.wustl.edu	36	6	27969325	27969325	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	27969325	27969325	G	A	SNP	HIST1H2BO	NM_003527	human	genbank	54_36p	1	reviewed	missense	c.106	p.E36K	1	"superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone"	"superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
TOB2P1	222699	genome.wustl.edu	36	6	28294429	28294429	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	28294429	28294429	G	T	SNP	LOC222699	NR_002936	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.15	-	-	-	pseudogene
NKAPL	222698	genome.wustl.edu	36	6	28335697	28335697	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	28335697	28335697	A	G	SNP	NKAPL	NM_001007531	human	genbank	54_36p	1	provisional	missense	c.569	p.K190R	1	NULL	HMMPfam_DUF926	-	no_errors
PGBD1	84547	genome.wustl.edu	36	6	28377695	28377695	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	28377695	28377695	C	T	SNP	PGBD1	NM_032507	human	genbank	54_36p	1	reviewed	silent	c.2085	p.I695	1	NULL	"HMMPfam_SCAN,HMMSmart_SCAN"	-	no_errors
ZNF323	64288	genome.wustl.edu	36	6	28402343	28402343	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	28402343	28402343	T	A	SNP	ZNF323	NM_145909	human	genbank	54_36p	-1	validated	missense	c.800	p.Y267F	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GPX6	257202	genome.wustl.edu	36	6	28580113	28580113	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	28580113	28580113	G	C	SNP	GPX6	NM_182701	human	genbank	54_36p	-1	reviewed	missense	c.601	p.Q201E	0	superfamily_Thioredoxin-like	"superfamily_Thioredoxin-like,HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2"	-	pseudogene
GPX6	257202	genome.wustl.edu	36	6	28582114	28582114	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	28582114	28582114	C	A	SNP	GPX6	NM_182701	human	genbank	54_36p	-1	reviewed	nonsense	c.313	p.G105*	1	"HMMPfam_GSHPx,superfamily_Thioredoxin-like"	"HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2,superfamily_Thioredoxin-like"	-	pseudogene
OR2J2	26707	genome.wustl.edu	36	6	29250309	29250310	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	GG	GG					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	29250309	29250310	GG	TT	DNP	OR2J2	NM_030905	human	genbank	54_36p	1	validated	missense	c.918_919	p.LG306FW	0.007:0.005	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5V1	81696	genome.wustl.edu	36	6	29339507	29339507	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	29339507	29339507	C	A	SNP	uc003nmb.1	ENST00000377164	human	ensembl	54_36p	-1	known	missense	c.329	p.C110F	0.3	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
DUSP22	56940	genome.wustl.edu	36	6	293818	293818	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	293818	293818	C	T	SNP	DUSP22	NM_020185	human	genbank	54_36p	1	provisional	missense	c.485	p.A162V	0.95	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195"	-	no_errors
OR14J1	442191	genome.wustl.edu	36	6	29383386	29383386	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	29383386	29383386	G	A	SNP	OR14J1	NM_030946	human	genbank	54_36p	1	provisional	missense	c.941	p.C314Y	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5V1	81696	genome.wustl.edu	36	6	29431442	29431442	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29431442	29431442	G	A	SNP	OR5V1	NM_030876	human	genbank	54_36p	-1	validated	silent	c.510	p.G170	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR12D3	81797	genome.wustl.edu	36	6	29450715	29450715	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29450715	29450715	G	A	SNP	OR12D3	NM_030959	human	genbank	54_36p	-1	provisional	missense	c.329	p.A110V	0	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR12D2	26529	genome.wustl.edu	36	6	29473164	29473164	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29473164	29473164	C	T	SNP	OR12D2	NM_013936	human	genbank	54_36p	1	reviewed	silent	c.709	p.L237	0.74	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
NQO2	4835	genome.wustl.edu	36	6	2960781	2960781	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	2960781	2960781	A	T	SNP	NQO2	NM_000904	human	genbank	54_36p	1	validated	missense	c.322	p.S108C	1	"HMMPfam_Flavodoxin_2,superfamily_Flavoproteins"	"HMMPfam_Flavodoxin_2,superfamily_Flavoproteins"	-	no_errors
GABBR1	2550	genome.wustl.edu	36	6	29685104	29685104	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29685104	29685104	G	C	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	silent	c.1740	p.V580	1	NULL	"superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_7tm_3"	-	no_errors
GABBR1	2550	genome.wustl.edu	36	6	29696888	29696888	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29696888	29696888	T	C	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	missense	c.1292	p.N431S	1	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_ANF_receptor,superfamily_Complement control module/SCR domain,HMMPfam_7tm_3,superfamily_Periplasmic binding protein-like I"	-	no_errors
MOG	4340	genome.wustl.edu	36	6	29746141	29746141	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29746141	29746141	C	T	SNP	MOG	NM_002433	human	genbank	54_36p	1	reviewed	nonsense	c.697	p.R233*	0.99	NULL	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IGv"	-	no_errors
HLA-G	3135	genome.wustl.edu	36	6	29905345	29905345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29905345	29905345	C	T	SNP	HLA-G	NM_002127	human	genbank	54_36p	1	reviewed	missense	c.791	p.T264I	1	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
HLA-G	3135	genome.wustl.edu	36	6	29905688	29905688	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	29905688	29905688	G	T	SNP	HLA-G	NM_002127	human	genbank	54_36p	1	reviewed	missense	c.1012	p.D338Y	1	NULL	"HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin"	-	no_errors
HLA-A	3105	genome.wustl.edu	36	6	30018561	30018576	+	Frame_Shift_Del	DEL	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	-	GCGGGGAGCCCCGCTT	GCGGGGAGCCCCGCTT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30018561	30018576	GCGGGGAGCCCCGCTT	-	DEL	HLA-A	NM_002116	human	genbank	54_36p	1	reviewed	frame_shift_del	c.122_137	p.R41fs	0.001:0.001:0.003:0.003:0.002:0.000:0.000:0.000:0.002:0.002:0.000:0.000:0.000:0.001:0.006:0.008	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain"	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,HMMPfam_C1-set,superfamily_Immunoglobulin,HMMSmart_SM00407,PatternScan_IG_MHC,HMMPfam_MHC_I_C"	"(deletion:cds_exon[30018513,30018782])"	no_errors
PPP1R11	6992	genome.wustl.edu	36	6	30144886	30144886	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30144886	30144886	G	T	SNP	PPP1R11	NM_021959	human	genbank	54_36p	1	reviewed	missense	c.205	p.A69S	1	HMMPfam_PPI_Ypi1	HMMPfam_PPI_Ypi1	-	no_errors
TRIM26	7726	genome.wustl.edu	36	6	30272432	30272432	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30272432	30272432	C	T	SNP	TRIM26	NM_003449	human	genbank	54_36p	-1	validated	missense	c.605	p.R202Q	0.92	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
TRIM39	56658	genome.wustl.edu	36	6	30416065	30416065	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30416065	30416065	A	G	SNP	TRIM39	NM_021253	human	genbank	54_36p	1	reviewed	missense	c.841	p.I281V	0	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
TRIM39	56658	genome.wustl.edu	36	6	30417509	30417509	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30417509	30417509	G	C	SNP	TRIM39	NM_021253	human	genbank	54_36p	1	reviewed	missense	c.1051	p.V351L	0.9	HMMSmart_SM00589	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,HMMSmart_SM00589,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
TRIM39	56658	genome.wustl.edu	36	6	30417764	30417764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30417764	30417764	G	A	SNP	TRIM39	NM_021253	human	genbank	54_36p	1	reviewed	missense	c.1306	p.G436R	0.98	"HMMPfam_SPRY,HMMSmart_SM00449"	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,HMMSmart_SM00589,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
PPP1R10	5514	genome.wustl.edu	36	6	30680465	30680465	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30680465	30680465	G	T	SNP	PPP1R10	NM_002714	human	genbank	54_36p	-1	reviewed	missense	c.981	p.S327R	0.01	NULL	"HMMSmart_SM00509,HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
ATAT1	79969	genome.wustl.edu	36	6	30718541	30718541	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30718541	30718541	G	C	SNP	C6orf134	NM_024909	human	genbank	54_36p	1	validated	missense	c.742	p.E248Q	1	NULL	HMMPfam_DUF738	-	no_errors
TUBB	203068	genome.wustl.edu	36	6	30799238	30799238	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30799238	30799238	C	T	SNP	TUBB	NM_178014	human	genbank	54_36p	1	provisional	silent	c.420	p.G140	0.99	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
DDR1	780	genome.wustl.edu	36	6	30971186	30971186	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	30971186	30971186	C	T	SNP	DDR1	NM_013994	human	genbank	54_36p	1	reviewed	missense	c.1540	p.R514C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VARS2	57176	genome.wustl.edu	36	6	31000125	31000125	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31000125	31000125	G	A	SNP	VARS2	NM_020442	human	genbank	54_36p	1	provisional	missense	c.2482	p.V828M	0.88	"superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1"	"superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1"	-	no_errors
CDSN	1041	genome.wustl.edu	36	6	31191799	31191799	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31191799	31191799	C	G	SNP	CDSN	NM_001264	human	genbank	54_36p	-1	reviewed	missense	c.1572	p.E524D	0.32	NULL	PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
MICB	4277	genome.wustl.edu	36	6	31573958	31573959	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	GG	GG	GG	TT	GG	GG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31573958	31573959	GG	TT	DNP	MICB	NM_005931	human	genbank	54_36p	1	reviewed	missense	c.9_10	p.G4C	0.001:0.000	NULL	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	-	no_errors
TNF	7124	genome.wustl.edu	36	6	31653042	31653042	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31653042	31653042	C	T	SNP	TNF	NM_000594	human	genbank	54_36p	1	reviewed	missense	c.451	p.L151F	0.96	"superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF"	"superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF,PatternScan_TNF_1"	-	no_errors
BAT2	7916	genome.wustl.edu	36	6	31702885	31702885	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	31702885	31702885	C	G	SNP	BAT2	NM_080686	human	genbank	54_36p	1	reviewed	silent	c.1221	p.A407	1	NULL	HMMPfam_BAT2_N	-	no_errors
MSH5	4439	genome.wustl.edu	36	6	31823189	31823189	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31823189	31823189	G	T	SNP	MSH5	NM_025259	human	genbank	54_36p	1	reviewed	splice_site	c.863+1	e9+1	1	-	-	-	no_errors
VARS	7407	genome.wustl.edu	36	6	31854754	31854754	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31854754	31854754	G	A	SNP	VARS	NM_006295	human	genbank	54_36p	-1	reviewed	missense	c.3695	p.P1232L	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SLC44A4	80736	genome.wustl.edu	36	6	31946600	31946600	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31946600	31946600	T	C	SNP	SLC44A4	NM_025257	human	genbank	54_36p	-1	validated	missense	c.905	p.Y302C	1	NULL	HMMPfam_DUF580	-	no_errors
EHMT2	10919	genome.wustl.edu	36	6	31972245	31972245	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	31972245	31972245	G	A	SNP	EHMT2	NM_006709	human	genbank	54_36p	-1	reviewed	missense	c.356	p.S119F	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
C2	717	genome.wustl.edu	36	6	32004487	32004487	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32004487	32004487	G	A	SNP	C2	NM_000063	human	genbank	54_36p	1	reviewed	splice_site	c.257-1	e3-1	0.56	-	-	-	no_errors
SKIV2L	6499	genome.wustl.edu	36	6	32039837	32039837	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32039837	32039837	C	T	SNP	SKIV2L	NM_006929	human	genbank	54_36p	1	reviewed	missense	c.1816	p.R606C	1	superfamily_SSF52540	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DSHCT"	-	no_errors
CYP21A2	1589	genome.wustl.edu	36	6	32114194	32114196	+	In_Frame_Del	DEL	CTG	CTG	-	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	CTG	CTG	CTG	-	CTG	CTG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32114194	32114196	CTG	-	DEL	CYP21A2	NM_000500	human	genbank	54_36p	1	reviewed	in_frame_del	c.16_18	p.L9in_frame_del	0.796:0.973:0.975	NULL	"superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	"(deletion:cds_exon[32114179,32114380])"	no_errors
TNXB	7148	genome.wustl.edu	36	6	32143602	32143602	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32143602	32143602	C	A	SNP	TNXB	NM_019105	human	genbank	54_36p	-1	reviewed	missense	c.6574	p.G2192C	0.99	"HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32280085	32280085	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32280085	32280085	T	A	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	missense	c.2925	p.Q975H	0.99	"HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32296287	32296287	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32296287	32296287	C	G	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	silent	c.1032	p.V344	1	"HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32296776	32296776	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32296776	32296776	C	T	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	missense	c.756	p.M252I	0.63	"HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH4	4855	genome.wustl.edu	36	6	32298323	32298323	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	32298323	32298323	G	A	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	missense	c.394	p.R132C	0.97	"HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
BRD2	6046	genome.wustl.edu	36	6	33053885	33053885	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33053885	33053885	G	C	SNP	BRD2	NM_005104	human	genbank	54_36p	1	reviewed	missense	c.1583	p.R528P	0.74	NULL	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
COL11A2	1302	genome.wustl.edu	36	6	33262425	33262425	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33262425	33262425	G	T	SNP	COL11A2	NM_080680	human	genbank	54_36p	-1	reviewed	missense	c.755	p.P252Q	0.77	NULL	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
RXRB	6257	genome.wustl.edu	36	6	33271352	33271352	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33271352	33271352	G	A	SNP	RXRB	NM_021976	human	genbank	54_36p	-1	reviewed	missense	c.1229	p.S410L	0.97	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
RXRB	6257	genome.wustl.edu	36	6	33273583	33273583	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33273583	33273583	G	A	SNP	RXRB	NM_021976	human	genbank	54_36p	-1	reviewed	missense	c.754	p.R252C	1	"HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	"HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
RING1	6015	genome.wustl.edu	36	6	33285759	33285759	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33285759	33285759	T	G	SNP	RING1	NM_002931	human	genbank	54_36p	1	reviewed	missense	c.329	p.I110S	1	superfamily_RING/U-box	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
VPS52	6293	genome.wustl.edu	36	6	33339243	33339243	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33339243	33339243	G	C	SNP	VPS52	NM_022553	human	genbank	54_36p	-1	reviewed	missense	c.1790	p.T597R	1	HMMPfam_Vps52	HMMPfam_Vps52	-	no_errors
VPS52	6293	genome.wustl.edu	36	6	33339806	33339806	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33339806	33339806	G	C	SNP	VPS52	NM_022553	human	genbank	54_36p	-1	reviewed	missense	c.1577	p.T526R	1	HMMPfam_Vps52	HMMPfam_Vps52	-	no_errors
B3GALT4	8705	genome.wustl.edu	36	6	33353260	33353260	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33353260	33353260	G	T	SNP	B3GALT4	NM_003782	human	genbank	54_36p	1	reviewed	missense	c.86	p.G29V	0.05	NULL	"HMMPfam_Galactosyl_T,PatternScan_PARATHYROID"	-	no_errors
TAPBP	6892	genome.wustl.edu	36	6	33380202	33380202	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	33380202	33380202	G	A	SNP	TAPBP	NM_003190	human	genbank	54_36p	-1	reviewed	missense	c.1060	p.H354Y	0.29	"superfamily_SSF48726,HMMPfam_C1-set"	"superfamily_SSF48726,HMMPfam_C1-set"	-	no_errors
ZBTB22	9278	genome.wustl.edu	36	6	33392524	33392524	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33392524	33392524	G	A	SNP	ZBTB22	NM_005453	human	genbank	54_36p	-1	validated	nonsense	c.148	p.Q50*	1	"superfamily_POZ domain,HMMPfam_BTB"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LYPLA2P1	653639	genome.wustl.edu	36	6	33441922	33441922	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33441922	33441922	A	G	SNP	LYPLA2P1	NR_001444	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
LYPLA2P1	653639	genome.wustl.edu	36	6	33441941	33441941	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33441941	33441941	C	T	SNP	LYPLA2P1	NR_001444	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.97	-	-	-	pseudogene
SYNGAP1	8831	genome.wustl.edu	36	6	33513723	33513723	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	33513723	33513723	G	A	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	missense	c.1018	p.G340R	1	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMSmart_SM00233,superfamily_PH domain-like,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1"	-	no_errors
SYNGAP1	8831	genome.wustl.edu	36	6	33518684	33518684	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33518684	33518684	A	T	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	nonsense	c.2332	p.K778*	0.96	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like"	-	no_errors
SYNGAP1	8831	genome.wustl.edu	36	6	33519570	33519570	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	33519570	33519570	G	T	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	missense	c.3218	p.S1073I	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like"	-	no_errors
BAK1	578	genome.wustl.edu	36	6	33651640	33651640	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	33651640	33651640	G	A	SNP	BAK1	NM_001188	human	genbank	54_36p	-1	reviewed	silent	c.114	p.Y38	1	superfamily_Bcl-2 inhibitors of programmed cell death	"superfamily_Bcl-2 inhibitors of programmed cell death,PatternScan_BH3,HMMPfam_Bcl-2,HMMSmart_SM00337,PatternScan_BH1,PatternScan_BH2"	-	no_errors
GRM4	2914	genome.wustl.edu	36	6	34104094	34104094	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	34104094	34104094	C	A	SNP	GRM4	NM_000841	human	genbank	54_36p	-1	reviewed	missense	c.2470	p.V824F	1	HMMPfam_7tm_3	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
SPDEF	25803	genome.wustl.edu	36	6	34620202	34620202	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	34620202	34620202	G	A	SNP	SPDEF	NM_012391	human	genbank	54_36p	-1	provisional	silent	c.9	p.S3	1	NULL	"superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
C6orf106	64771	genome.wustl.edu	36	6	34682583	34682583	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	34682583	34682583	C	A	SNP	C6orf106	NM_024294	human	genbank	54_36p	-1	validated	silent	c.588	p.T196	1	NULL	superfamily_UBA-like	-	no_errors
UHRF1BP1	54887	genome.wustl.edu	36	6	34934072	34934072	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	34934072	34934072	T	A	SNP	UHRF1BP1	NM_017754	human	genbank	54_36p	1	validated	missense	c.1961	p.V654D	0.43	NULL	NULL	-	no_errors
UHRF1BP1	54887	genome.wustl.edu	36	6	34939818	34939818	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	34939818	34939818	C	A	SNP	UHRF1BP1	NM_017754	human	genbank	54_36p	1	validated	missense	c.3277	p.L1093I	1	NULL	NULL	-	no_errors
IRF4	3662	genome.wustl.edu	36	6	350067	350067	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	350067	350067	G	A	SNP	IRF4	NM_002460	human	genbank	54_36p	1	validated	silent	c.1149	p.V383	1	"superfamily_SMAD/FHA domain,HMMPfam_IRF-3"	"HMMSmart_SM00348,superfamily_Winged helix DNA-binding domain,HMMPfam_IRF,PatternScan_IRF,superfamily_SMAD/FHA domain,HMMPfam_IRF-3"	-	no_errors
ANKS1A	23294	genome.wustl.edu	36	6	35093620	35093620	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35093620	35093620	C	T	SNP	ANKS1A	NM_015245	human	genbank	54_36p	1	validated	nonsense	c.1816	p.R606*	1	NULL	"HMMPfam_Ank,superfamily_ANK,HMMSmart_ANK,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID"	-	no_errors
TCP11	6954	genome.wustl.edu	36	6	35194074	35194074	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35194074	35194074	T	G	SNP	TCP11	NM_001093728	human	genbank	54_36p	-1	validated	missense	c.1501	p.T501P	0.45	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
TCP11	6954	genome.wustl.edu	36	6	35196035	35196035	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35196035	35196035	C	A	SNP	TCP11	NM_001093728	human	genbank	54_36p	-1	validated	missense	c.1033	p.V345F	0.03	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
PPARD	5467	genome.wustl.edu	36	6	35500315	35500315	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35500315	35500315	C	T	SNP	PPARD	NM_006238	human	genbank	54_36p	1	reviewed	missense	c.859	p.H287Y	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
FANCE	2178	genome.wustl.edu	36	6	35531959	35531959	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35531959	35531959	C	T	SNP	FANCE	NM_021922	human	genbank	54_36p	1	reviewed	missense	c.706	p.H236Y	0	NULL	NULL	-	no_errors
TULP1	7287	genome.wustl.edu	36	6	35585497	35585497	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35585497	35585497	C	G	SNP	TULP1	NM_003322	human	genbank	54_36p	-1	reviewed	missense	c.610	p.E204Q	0.9	NULL	"superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2"	-	no_errors
FKBP5	2289	genome.wustl.edu	36	6	35712908	35712908	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35712908	35712908	G	C	SNP	FKBP5	NM_004117	human	genbank	54_36p	-1	validated	silent	c.111	p.V37	1	superfamily_FKBP-like	"superfamily_FKBP-like,HMMPfam_FKBP_C,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	-	no_errors
C6orf81	221481	genome.wustl.edu	36	6	35823062	35823062	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35823062	35823062	C	T	SNP	C6orf81	NM_145028	human	genbank	54_36p	1	predicted	missense	c.572	p.T191M	0.23	"HMMPfam_DUF634,superfamily_ARM-type_fold"	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
SRPK1	6732	genome.wustl.edu	36	6	35945246	35945246	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	35945246	35945246	C	T	SNP	SRPK1	NM_003137	human	genbank	54_36p	-1	reviewed	missense	c.1402	p.D468N	0.96	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SLC26A8	116369	genome.wustl.edu	36	6	36019678	36019678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36019678	36019678	C	T	SNP	SLC26A8	NM_052961	human	genbank	54_36p	-1	reviewed	missense	c.2890	p.G964S	0	NULL	"HMMPfam_Sulfate_transp,HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa"	-	no_errors
C6orf222	389384	genome.wustl.edu	36	6	36405842	36405842	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36405842	36405842	G	C	SNP	C6orf222	NM_001010903	human	genbank	54_36p	-1	predicted	missense	c.604	p.R202G	0	NULL	NULL	-	no_errors
ETV7	51513	genome.wustl.edu	36	6	36451665	36451665	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36451665	36451665	G	T	SNP	ETV7	NM_016135	human	genbank	54_36p	-1	provisional	missense	c.268	p.L90I	1	"superfamily_SAM/Pointed domain,HMMSmart_SM00251,HMMPfam_SAM_PNT"	"superfamily_SAM/Pointed domain,HMMSmart_SM00251,HMMPfam_SAM_PNT,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors
STK38	11329	genome.wustl.edu	36	6	36574132	36574132	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36574132	36574132	C	A	SNP	STK38	NM_007271	human	genbank	54_36p	-1	provisional	missense	c.1062	p.K354N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C"	-	no_errors
STK38	11329	genome.wustl.edu	36	6	36574199	36574199	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36574199	36574199	T	G	SNP	STK38	NM_007271	human	genbank	54_36p	-1	provisional	missense	c.995	p.K332T	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
CDKN1A	1026	genome.wustl.edu	36	6	36760275	36760275	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36760275	36760275	G	A	SNP	CDKN1A	NM_000389	human	genbank	54_36p	1	reviewed	missense	c.419	p.R140Q	0.94	NULL	HMMPfam_CDI	-	no_errors
PPIL1	51645	genome.wustl.edu	36	6	36950519	36950519	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36950519	36950519	G	A	SNP	PPIL1	NM_016059	human	genbank	54_36p	-1	reviewed	missense	c.8	p.A3V	0.95	NULL	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
C6orf89	221477	genome.wustl.edu	36	6	36995331	36995331	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	36995331	36995331	G	A	SNP	C6orf89	NM_152734	human	genbank	54_36p	1	validated	splice_site	c.847-1	e7-1	1	-	-	-	no_errors
ZFAND3	60685	genome.wustl.edu	36	6	38192432	38192432	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	38192432	38192432	G	T	SNP	ZFAND3	NM_021943	human	genbank	54_36p	1	validated	silent	c.468	p.R156	0.98	NULL	HMMPfam_zf-AN1	-	no_errors
DNAH8	1769	genome.wustl.edu	36	6	38985289	38985289	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	38985289	38985289	T	C	SNP	DNAH8	NM_001371	human	genbank	54_36p	1	validated	silent	c.8880	p.R2960	0.5	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DNAH8	1769	genome.wustl.edu	36	6	39106034	39106034	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	39106034	39106034	A	T	SNP	DNAH8	NM_001371	human	genbank	54_36p	1	validated	missense	c.13361	p.K4454M	1	HMMPfam_Dynein_heavy	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KCNK16	83795	genome.wustl.edu	36	6	39390828	39390828	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	39390828	39390828	G	C	SNP	KCNK16	NM_032115	human	genbank	54_36p	-1	reviewed	silent	c.858	p.G286	0	NULL	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	-	no_errors
KCNK16	83795	genome.wustl.edu	36	6	39393578	39393578	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	39393578	39393578	C	T	SNP	KCNK16	NM_032115	human	genbank	54_36p	-1	reviewed	missense	c.457	p.A153T	0	superfamily_SSF81324	"HMMPfam_Ion_trans_2,superfamily_SSF81324"	-	no_errors
PRPF4B	8899	genome.wustl.edu	36	6	3977297	3977297	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	3977297	3977297	C	T	SNP	PRPF4B	NM_003913	human	genbank	54_36p	1	reviewed	nonsense	c.547	p.R183*	0.99	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DAAM2	23500	genome.wustl.edu	36	6	39943353	39943364	+	In_Frame_Del	DEL	TCCACACCTCAC	TCCACACCTCAC	-	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	TCCACACCTCAC	TCCACACCTCAC	TCCACACCTCAC	-	TCCACACCTCAC	TCCACACCTCAC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	39943353	39943364	TCCACACCTCAC	-	DEL	DAAM2	NM_015345	human	genbank	54_36p	1	validated	in_frame_del	c.518_529	p.HTSL174in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.958:0.999:1.000:0.997:0.998	HMMPfam_Drf_GBD	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	"(deletion:cds_exon[39943264,39943597])"	no_errors
C6orf146	222826	genome.wustl.edu	36	6	4015002	4015002	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	4015002	4015002	G	A	SNP	C6orf146	NM_173563	human	genbank	54_36p	-1	predicted	missense	c.454	p.P152S	1	NULL	NULL	-	no_errors
LRFN2	57497	genome.wustl.edu	36	6	40467667	40467667	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	40467667	40467667	G	A	SNP	LRFN2	NM_020737	human	genbank	54_36p	-1	provisional	missense	c.2363	p.T788M	1	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
LRFN2	57497	genome.wustl.edu	36	6	40468280	40468280	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	40468280	40468280	G	C	SNP	LRFN2	NM_020737	human	genbank	54_36p	-1	provisional	missense	c.1750	p.P584A	0.06	NULL	"HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
TREML2	79865	genome.wustl.edu	36	6	41276717	41276717	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	41276717	41276717	G	A	SNP	TREML2	NM_024807	human	genbank	54_36p	-1	validated	missense	c.185	p.P62L	0.07	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set"	-	no_errors
TRERF1	55809	genome.wustl.edu	36	6	42304171	42304171	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	42304171	42304171	C	T	SNP	TRERF1	NM_033502	human	genbank	54_36p	-1	reviewed	missense	c.3493	p.D1165N	0.96	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
TRERF1	55809	genome.wustl.edu	36	6	42304174	42304174	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	42304174	42304174	C	T	SNP	TRERF1	NM_033502	human	genbank	54_36p	-1	reviewed	missense	c.3490	p.D1164N	0.11	NULL	"HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
UBR2	23304	genome.wustl.edu	36	6	42681509	42681509	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	42681509	42681509	T	C	SNP	UBR2	NM_015255	human	genbank	54_36p	1	provisional	silent	c.735	p.T245	0.99	"superfamily_ClpS-like,HMMPfam_ClpS"	"PatternScan_LIPOCALIN,HMMPfam_zf-UBR,HMMSmart_SM00396,superfamily_ClpS-like,HMMPfam_ClpS,PatternScan_RCC1_2"	-	no_errors
PRPH2	5961	genome.wustl.edu	36	6	42780284	42780284	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	42780284	42780284	C	T	SNP	PRPH2	NM_000322	human	genbank	54_36p	-1	reviewed	missense	c.625	p.V209I	1	"HMMPfam_Tetraspannin,superfamily_Tetraspanin,PatternScan_RDS_ROM1"	"HMMPfam_Tetraspannin,superfamily_Tetraspanin,PatternScan_RDS_ROM1"	-	no_errors
PRPH2	5961	genome.wustl.edu	36	6	42797997	42797997	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	42797997	42797997	T	A	SNP	PRPH2	NM_000322	human	genbank	54_36p	-1	reviewed	missense	c.54	p.Q18H	1	HMMPfam_Tetraspannin	"superfamily_Tetraspanin,PatternScan_RDS_ROM1,HMMPfam_Tetraspannin"	-	no_errors
PTCRA	171558	genome.wustl.edu	36	6	42998844	42998844	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	42998844	42998844	C	A	SNP	PTCRA	NM_138296	human	genbank	54_36p	1	validated	missense	c.160	p.P54T	0.02	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
PEX6	5190	genome.wustl.edu	36	6	43042245	43042245	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	43042245	43042245	G	A	SNP	PEX6	NM_000287	human	genbank	54_36p	-1	reviewed	missense	c.2090	p.P697L	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
CUL7	9820	genome.wustl.edu	36	6	43127973	43127973	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	43127973	43127973	G	A	SNP	CUL7	NM_014780	human	genbank	54_36p	-1	validated	missense	c.532	p.R178C	0.97	NULL	"PatternScan_CULLIN_1,superfamily_Gal_bind_like,HMMPfam_APC10,HMMPfam_Cullin,superfamily_Cullin_homology,superfamily_SSF46785"	-	no_errors
SRF	6722	genome.wustl.edu	36	6	43252280	43252280	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	43252280	43252280	G	T	SNP	SRF	NM_003131	human	genbank	54_36p	1	reviewed	missense	c.1059	p.Q353H	1	NULL	"superfamily_TF_MADSbox,HMMSmart_MADS,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF"	-	no_errors
ABCC10	89845	genome.wustl.edu	36	6	43508756	43508756	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	43508756	43508756	C	T	SNP	ABCC10	NM_033450	human	genbank	54_36p	1	reviewed	nonsense	c.931	p.Q311*	0.97	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane"	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC10	89845	genome.wustl.edu	36	6	43524900	43524900	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	43524900	43524900	G	T	SNP	ABCC10	NM_033450	human	genbank	54_36p	1	reviewed	missense	c.4099	p.A1367S	1	"HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
SLC35B2	347734	genome.wustl.edu	36	6	44332572	44332572	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	44332572	44332572	C	T	SNP	SLC35B2	NM_178148	human	genbank	54_36p	-1	validated	silent	c.33	p.L11	0.94	NULL	"HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE,PatternScan_COPPER_BLUE"	-	no_errors
CDC5L	988	genome.wustl.edu	36	6	44502419	44502419	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	44502419	44502419	T	-	DEL	CDC5L	NM_001253	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1873	p.S625fs	1	NULL	"superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	"(deletion:cds_exon[44502197,44502439])"	no_errors
CLIC5	53405	genome.wustl.edu	36	6	45978899	45978899	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	45978899	45978899	G	A	SNP	CLIC5	NM_016929	human	genbank	54_36p	-1	validated	silent	c.660	p.N220	0.97	superfamily_Glutathione S-transferase (GST) C-terminal domain	"superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain"	-	no_errors
ENPP4	22875	genome.wustl.edu	36	6	46215774	46215774	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	46215774	46215774	T	C	SNP	ENPP4	NM_014936	human	genbank	54_36p	1	validated	silent	c.495	p.N165	0.22	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	-	no_errors
LOC442153	442153	genome.wustl.edu	36	6	4648032	4648032	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	4648032	4648032	A	G	SNP	LOC442153	XR_016425	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC442153	442153	genome.wustl.edu	36	6	4648250	4648250	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	4648250	4648250	G	A	SNP	LOC442153	XR_016425	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
TDRD6	221400	genome.wustl.edu	36	6	46766750	46766750	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	46766750	46766750	T	C	SNP	TDRD6	NM_001010870	human	genbank	54_36p	1	provisional	missense	c.2926	p.F976L	1	NULL	"HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748"	-	no_errors
CD2AP	23607	genome.wustl.edu	36	6	47681952	47681952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	47681952	47681952	C	T	SNP	CD2AP	NM_012120	human	genbank	54_36p	1	reviewed	missense	c.1510	p.R504C	1	NULL	"HMMSmart_SH3,HMMPfam_SH3_1,superfamily_SH3"	-	no_errors
GPR115	221393	genome.wustl.edu	36	6	47790130	47790130	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	47790130	47790130	C	T	SNP	GPR115	NM_153838	human	genbank	54_36p	1	validated	missense	c.1190	p.T397I	0	NULL	HMMPfam_7tm_2	-	no_errors
OPN5	221391	genome.wustl.edu	36	6	47871259	47871259	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	47871259	47871259	G	C	SNP	OPN5	NM_181744	human	genbank	54_36p	1	reviewed	splice_site	c.756+1	e4+1	1	-	-	-	no_errors
RPP40	10799	genome.wustl.edu	36	6	4944007	4944007	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	4944007	4944007	C	T	SNP	RPP40	NM_006638	human	genbank	54_36p	-1	validated	nonsense	c.501	p.W167*	1	HMMPfam_Ribonuc_P_40	HMMPfam_Ribonuc_P_40	-	no_errors
CENPQ	55166	genome.wustl.edu	36	6	49547843	49547843	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	49547843	49547843	A	G	SNP	CENPQ	NM_018132	human	genbank	54_36p	1	validated	missense	c.266	p.E89G	0.98	NULL	NULL	-	no_errors
RHAG	6005	genome.wustl.edu	36	6	49690520	49690521	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	49690520	49690521	GA	TT	DNP	RHAG	NM_000324	human	genbank	54_36p	-1	reviewed	missense	c.646_645	p.L216I	0.988:0.693	"HMMPfam_Ammonium_transp,superfamily_RH_like_transpt"	"HMMPfam_Ammonium_transp,superfamily_RH_like_transpt"	-	no_errors
DEFB114	245928	genome.wustl.edu	36	6	50036110	50036110	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	50036110	50036110	T	A	SNP	DEFB114	NM_001037499	human	genbank	54_36p	-1	provisional	missense	c.64	p.T22S	0	NULL	HMMPfam_Defensin_beta	-	no_errors
TFAP2D	83741	genome.wustl.edu	36	6	50790800	50790800	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	50790800	50790800	G	A	SNP	TFAP2D	NM_172238	human	genbank	54_36p	1	validated	missense	c.52	p.G18R	1	NULL	HMMPfam_TF_AP-2	-	no_errors
TFAP2D	83741	genome.wustl.edu	36	6	50848417	50848417	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	50848417	50848417	A	T	SNP	TFAP2D	NM_172238	human	genbank	54_36p	1	validated	missense	c.1240	p.T414S	0.95	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51591933	51591933	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	51591933	51591933	A	C	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.12130	p.L4044V	0	NULL	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like"	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51840792	51840792	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	51840792	51840792	C	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.7561	p.A2521S	1	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51990356	51990356	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	6	51990356	51990356	C	T	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.5411	p.R1804H	0	superfamily_E set domains	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51998297	51998297	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	51998297	51998297	C	G	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.4270	p.D1424H	0	"HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains"	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	51998397	51998397	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	51998397	51998397	C	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	silent	c.4170	p.R1390	0.27	"HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains"	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	52017815	52017815	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	52017815	52017815	G	C	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.2623	p.P875A	0.28	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
PKHD1	5314	genome.wustl.edu	36	6	52025839	52025839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	52025839	52025839	C	G	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.2134	p.V712L	0.71	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
EFHC1	114327	genome.wustl.edu	36	6	52425561	52425561	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	52425561	52425561	T	A	SNP	EFHC1	NM_018100	human	genbank	54_36p	1	validated	missense	c.690	p.D230E	1	NULL	"HMMSmart_SM00676,HMMPfam_DUF1126,superfamily_EF-hand,HMMPfam_efhand"	-	no_errors
GSTA1	2938	genome.wustl.edu	36	6	52765729	52765729	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	52765729	52765729	C	G	SNP	GSTA1	NM_145740	human	genbank	54_36p	-1	reviewed	missense	c.430	p.G144R	1	"superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C"	"superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C"	-	no_errors
ICK	22858	genome.wustl.edu	36	6	52986476	52986476	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	52986476	52986476	C	A	SNP	ICK	NM_014920	human	genbank	54_36p	-1	reviewed	missense	c.1095	p.Q365H	0.06	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
LRRC1	55227	genome.wustl.edu	36	6	53851816	53851816	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	53851816	53851816	A	T	SNP	LRRC1	NM_018214	human	genbank	54_36p	1	validated	missense	c.344	p.N115I	1	"superfamily_L domain-like,HMMSmart_SM00364"	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
C6orf142	90523	genome.wustl.edu	36	6	54097351	54097351	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	54097351	54097351	A	G	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	missense	c.341	p.N114S	0	NULL	NULL	-	no_errors
C6orf142	90523	genome.wustl.edu	36	6	54203568	54203568	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	54203568	54203568	C	T	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	missense	c.1211	p.S404L	0.01	NULL	NULL	-	no_errors
C6orf142	90523	genome.wustl.edu	36	6	54230083	54230083	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	54230083	54230083	G	A	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	missense	c.1336	p.A446T	1	NULL	NULL	-	no_errors
HCRTR2	3062	genome.wustl.edu	36	6	55227992	55227992	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	55227992	55227992	C	T	SNP	HCRTR2	NM_001526	human	genbank	54_36p	1	reviewed	missense	c.502	p.R168W	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_Orexin_rec2"	-	no_errors
HCRTR2	3062	genome.wustl.edu	36	6	55228105	55228105	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	55228105	55228105	C	A	SNP	HCRTR2	NM_001526	human	genbank	54_36p	1	reviewed	silent	c.615	p.T205	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_Orexin_rec2,superfamily_SSF81321"	-	no_errors
HMGCLL1	54511	genome.wustl.edu	36	6	55486876	55486876	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	55486876	55486876	G	T	SNP	HMGCLL1	NM_019036	human	genbank	54_36p	-1	validated	silent	c.561	p.S187	0.99	"superfamily_Aldolase,HMMPfam_HMGL-like"	"superfamily_Aldolase,HMMPfam_HMGL-like"	-	no_errors
COL21A1	81578	genome.wustl.edu	36	6	56143847	56143847	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56143847	56143847	C	T	SNP	COL21A1	NM_030820	human	genbank	54_36p	-1	reviewed	missense	c.679	p.D227N	1	NULL	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,HMMPfam_Collagen"	-	no_errors
COL21A1	81578	genome.wustl.edu	36	6	56152449	56152449	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56152449	56152449	C	T	SNP	COL21A1	NM_030820	human	genbank	54_36p	-1	reviewed	missense	c.526	p.D176N	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_vWA-like"	-	no_errors
DST	667	genome.wustl.edu	36	6	56437496	56437496	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56437496	56437496	T	A	SNP	DST	ENST00000370769	human	ensembl	54_36p	-1	known	nonsense	c.21997	p.K7333*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	genome.wustl.edu	36	6	56465184	56465184	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56465184	56465184	C	T	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.13666	p.A4556T	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	genome.wustl.edu	36	6	56525723	56525723	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56525723	56525723	T	C	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.8935	p.K2979E	1	superfamily_Spectrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	genome.wustl.edu	36	6	56574323	56574323	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56574323	56574323	T	C	SNP	DST	ENST00000370769	human	ensembl	54_36p	-1	known	silent	c.10791	p.K3597	0.98	superfamily_Spectrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	genome.wustl.edu	36	6	56577184	56577184	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56577184	56577184	C	T	SNP	DST	NM_020388	human	genbank	54_36p	-1	reviewed	missense	c.8590	p.E2864K	0	NULL	"HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_Spectrin,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin,PatternScan_RIBOSOMAL_L23"	-	no_errors
DST	667	genome.wustl.edu	36	6	56589822	56589822	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56589822	56589822	C	T	SNP	DST	NM_001723	human	genbank	54_36p	-1	reviewed	silent	c.6402	p.T2134	0.74	"superfamily_SSF75399,HMMSmart_PLEC"	"HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin"	-	no_errors
DST	667	genome.wustl.edu	36	6	56605739	56605739	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56605739	56605739	C	T	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.3044	p.R1015H	1	superfamily_Spectrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	genome.wustl.edu	36	6	56607639	56607639	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56607639	56607639	A	T	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	silent	c.2625	p.I875	1	superfamily_Spectrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	genome.wustl.edu	36	6	56614797	56614797	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	56614797	56614797	A	G	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.1301	p.I434T	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EXOC2	55770	genome.wustl.edu	36	6	578067	578067	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	578067	578067	C	A	SNP	EXOC2	NM_018303	human	genbank	54_36p	-1	reviewed	missense	c.169	p.A57S	1	"superfamily_Ig_E-set,HMMPfam_TIG"	"superfamily_Ig_E-set,HMMPfam_TIG"	-	no_errors
LOC727842	727842	genome.wustl.edu	36	6	58554097	58554097	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	58554097	58554097	G	T	SNP	LOC727842	XR_015140	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC727842	727842	genome.wustl.edu	36	6	58554168	58554168	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	58554168	58554168	G	C	SNP	LOC727842	XR_015140	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PHF3	23469	genome.wustl.edu	36	6	64447911	64447911	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	64447911	64447911	A	G	SNP	PHF3	NM_015153	human	genbank	54_36p	1	provisional	missense	c.296	p.N99S	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC"	-	no_errors
BAI3	577	genome.wustl.edu	36	6	69741948	69741948	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	69741948	69741948	C	G	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.1729	p.H577D	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BAI3	577	genome.wustl.edu	36	6	69829627	69829627	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	69829627	69829627	T	C	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.2414	p.I805T	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BAI3	577	genome.wustl.edu	36	6	70097117	70097117	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	70097117	70097117	A	T	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	splice_site	c.3036-2	e21-2	1	-	-	-	no_errors
LMBRD1	55788	genome.wustl.edu	36	6	70464211	70464211	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	70464211	70464211	G	A	SNP	LMBRD1	NM_018368	human	genbank	54_36p	-1	provisional	missense	c.1382	p.S461F	0.17	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
COL19A1	1310	genome.wustl.edu	36	6	70790257	70790257	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	70790257	70790257	A	T	SNP	COL19A1	NM_001858	human	genbank	54_36p	1	reviewed	missense	c.1044	p.K348N	1	HMMPfam_Collagen	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen"	-	no_errors
COL19A1	1310	genome.wustl.edu	36	6	70938599	70938599	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	70938599	70938599	T	G	SNP	COL19A1	NM_001858	human	genbank	54_36p	1	reviewed	missense	c.2591	p.L864W	0.98	HMMPfam_Collagen	"HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl"	-	no_errors
COL9A1	1297	genome.wustl.edu	36	6	70999156	70999180	+	Frame_Shift_Del	DEL	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	-	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	-	TCTGGACGCTTAAGACTGGCAGCCA	TCTGGACGCTTAAGACTGGCAGCCA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	70999156	70999180	TCTGGACGCTTAAGACTGGCAGCCA	-	DEL	COL9A1	NM_001851	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2354_2330	p.M777fs	1.000:1.000:0.960:1.000:1.000:0.998:1.000:0.999:0.997:0.990:0.905:0.860:0.999:1.000:0.999:1.000:1.000:0.994:1.000:1.000:0.987:1.000:1.000:1.000:1.000	NULL	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen"	"(deletion:cds_exon[70999007,70999195])"	no_errors
COL9A1	1297	genome.wustl.edu	36	6	71068485	71068485	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	71068485	71068485	A	T	SNP	COL9A1	NM_001851	human	genbank	54_36p	-1	reviewed	missense	c.28	p.F10I	1	NULL	"HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl"	-	no_errors
RREB1	6239	genome.wustl.edu	36	6	7175676	7175676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	7175676	7175676	G	T	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	missense	c.2345	p.G782V	0.55	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
RREB1	6239	genome.wustl.edu	36	6	7176750	7176750	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	7176750	7176750	C	T	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	missense	c.3419	p.S1140F	0.85	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
RREB1	6239	genome.wustl.edu	36	6	7193751	7193751	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	7193751	7193751	C	G	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	missense	c.4780	p.P1594A	1	superfamily_SSF57667	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	72735448	72735448	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	72735448	72735448	C	G	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	missense	c.206	p.T69R	1	superfamily_FYVE/PHD zinc finger	"superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73025449	73025449	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	73025449	73025449	T	C	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	silent	c.2967	p.S989	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73031872	73031872	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	73031872	73031872	C	A	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	missense	c.3253	p.H1085N	0.38	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73032412	73032412	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	73032412	73032412	A	T	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	missense	c.3337	p.R1113W	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
RIMS1	22999	genome.wustl.edu	36	6	73040845	73040845	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	73040845	73040845	G	A	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	silent	c.3471	p.P1157	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
CAGE1	285782	genome.wustl.edu	36	6	7318748	7318748	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	7318748	7318748	C	A	SNP	CAGE1	NM_205864	human	genbank	54_36p	-1	validated	missense	c.895	p.V299L	0	NULL	NULL	-	no_errors
RIOK1	83732	genome.wustl.edu	36	6	7359603	7359603	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	7359603	7359603	A	G	SNP	RIOK1	NM_031480	human	genbank	54_36p	1	reviewed	missense	c.1577	p.D526G	0.02	NULL	"HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1,PatternScan_RIO1"	-	no_errors
KCNQ5	56479	genome.wustl.edu	36	6	73844239	73844239	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	73844239	73844239	G	A	SNP	KCNQ5	NM_019842	human	genbank	54_36p	1	reviewed	missense	c.826	p.V276I	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
KCNQ5	56479	genome.wustl.edu	36	6	73877773	73877773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	73877773	73877773	G	C	SNP	KCNQ5	NM_019842	human	genbank	54_36p	1	reviewed	missense	c.1051	p.A351P	1	superfamily_Voltage-gated potassium channels	"HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
KCNQ5	56479	genome.wustl.edu	36	6	73961051	73961051	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	73961051	73961051	A	T	SNP	KCNQ5	NM_019842	human	genbank	54_36p	1	reviewed	missense	c.1992	p.K664N	1	NULL	"HMMPfam_Ion_trans,HMMPfam_KCNQ_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
MTO1	25821	genome.wustl.edu	36	6	74240007	74240007	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	74240007	74240007	A	G	SNP	MTO1	NM_133645	human	genbank	54_36p	1	reviewed	missense	c.734	p.K245R	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_GIDA"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_GIDA,PatternScan_GIDA_1,PatternScan_GIDA_2"	-	no_errors
CD109	135228	genome.wustl.edu	36	6	74574673	74574673	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	74574673	74574673	T	G	SNP	CD109	NM_133493	human	genbank	54_36p	1	validated	silent	c.3336	p.T1112	0	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp"	"HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep"	-	no_errors
DSP	1832	genome.wustl.edu	36	6	7504456	7504456	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	7504456	7504456	A	G	SNP	DSP	NM_004415	human	genbank	54_36p	1	reviewed	splice_site	c.423-2	e4-2	0.95	-	-	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75900411	75900411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	75900411	75900411	G	C	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	missense	c.5547	p.N1849K	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen"	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75949716	75949716	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	75949716	75949716	G	C	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	nonsense	c.1661	p.S554*	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
SENP6	26054	genome.wustl.edu	36	6	76429850	76429850	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	76429850	76429850	C	G	SNP	SENP6	NM_015571	human	genbank	54_36p	1	validated	missense	c.890	p.T297S	0.66	NULL	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48"	-	no_errors
TTK	7272	genome.wustl.edu	36	6	80777897	80777897	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	80777897	80777897	C	G	SNP	TTK	NM_003318	human	genbank	54_36p	1	provisional	nonsense	c.641	p.S214*	0.9	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
LOC643562	643562	genome.wustl.edu	36	6	80834737	80834737	+	RNA	SNP	A	A	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	80834737	80834737	A	C	SNP	LOC643562	XR_016539	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.04	-	-	-	pseudogene
ME1	4199	genome.wustl.edu	36	6	83983022	83983022	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	83983022	83983022	G	T	SNP	ME1	NM_002395	human	genbank	54_36p	-1	reviewed	missense	c.1462	p.Q488K	0.99	"HMMPfam_Malic_M,superfamily_NAD(P)-bd"	"superfamily_SSF53223,HMMPfam_malic,PatternScan_MALIC_ENZYMES,HMMPfam_Malic_M,superfamily_NAD(P)-bd"	-	no_errors
SNAP91	9892	genome.wustl.edu	36	6	84327316	84327316	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	84327316	84327316	C	A	SNP	SNAP91	NM_014841	human	genbank	54_36p	-1	validated	missense	c.2512	p.A838S	0.97	NULL	"superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_GAT-like domain"	-	no_errors
KIAA1009	22832	genome.wustl.edu	36	6	84961443	84961443	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	84961443	84961443	G	C	SNP	KIAA1009	NM_014895	human	genbank	54_36p	-1	validated	nonsense	c.905	p.S302*	1	NULL	NULL	-	no_errors
NT5E	4907	genome.wustl.edu	36	6	86251818	86251818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	86251818	86251818	G	A	SNP	NT5E	NM_002526	human	genbank	54_36p	1	validated	missense	c.898	p.V300I	1	superfamily_SSF56300	"superfamily_SSF56300,PatternScan_5_NUCLEOTIDASE_1,HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C"	-	no_errors
NT5E	4907	genome.wustl.edu	36	6	86253849	86253849	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	86253849	86253849	A	G	SNP	NT5E	NM_002526	human	genbank	54_36p	1	validated	missense	c.1027	p.I343V	0.03	"HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C"	"HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_1,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C,superfamily_SSF56300"	-	no_errors
SYNCRIP	10492	genome.wustl.edu	36	6	86381481	86381481	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	86381481	86381481	A	C	SNP	SYNCRIP	NM_006372	human	genbank	54_36p	-1	provisional	silent	c.1584	p.G528	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ZNF292	23036	genome.wustl.edu	36	6	88028184	88028184	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	88028184	88028184	G	T	SNP	ZNF292	NM_015021	human	genbank	54_36p	1	validated	missense	c.8118	p.M2706I	0.05	NULL	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RRAGD	58528	genome.wustl.edu	36	6	90145745	90145745	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	90145745	90145745	T	C	SNP	RRAGD	NM_021244	human	genbank	54_36p	-1	validated	missense	c.676	p.I226V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA"	-	no_errors
MDN1	23195	genome.wustl.edu	36	6	90428566	90428566	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	90428566	90428566	A	G	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	silent	c.14526	p.G4842	0.96	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327"	-	no_errors
MDN1	23195	genome.wustl.edu	36	6	90466042	90466042	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	90466042	90466042	T	A	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.8996	p.K2999M	0.11	NULL	"HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like"	-	no_errors
MDN1	23195	genome.wustl.edu	36	6	90479147	90479147	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	90479147	90479147	C	A	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.7298	p.G2433V	1	NULL	"HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like"	-	no_errors
BACH2	60468	genome.wustl.edu	36	6	90698884	90698884	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	90698884	90698884	A	G	SNP	BACH2	NM_021813	human	genbank	54_36p	-1	validated	silent	c.2490	p.C830	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	-	no_errors
MAP3K7	6885	genome.wustl.edu	36	6	91314573	91314573	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	91314573	91314573	C	T	SNP	MAP3K7	NM_145331	human	genbank	54_36p	-1	reviewed	missense	c.994	p.D332N	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
EPHA7	2045	genome.wustl.edu	36	6	94177476	94177476	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	94177476	94177476	A	G	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.296	p.F99S	1	"superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615"	###############################################################################################################################################################################################################################################################	-	no_errors
MANEA	79694	genome.wustl.edu	36	6	96141209	96141209	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	96141209	96141209	A	T	SNP	MANEA	NM_024641	human	genbank	54_36p	1	validated	missense	c.173	p.N58I	0	NULL	NULL	-	no_errors
KLHL32	114792	genome.wustl.edu	36	6	97639767	97639767	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	97639767	97639767	C	T	SNP	KLHL32	NM_052904	human	genbank	54_36p	1	validated	silent	c.456	p.D152	1	HMMPfam_BACK	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
KLHL32	114792	genome.wustl.edu	36	6	97693779	97693779	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	97693779	97693779	C	T	SNP	KLHL32	NM_052904	human	genbank	54_36p	1	validated	missense	c.1763	p.A588V	1	NULL	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
C6orf167	253714	genome.wustl.edu	36	6	97727664	97727664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	6	97727664	97727664	C	G	SNP	C6orf167	NM_198468	human	genbank	54_36p	-1	predicted	missense	c.2835	p.M945I	1	NULL	NULL	-	no_errors
SFRS18	25957	genome.wustl.edu	36	6	99963796	99963796	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	6	99963796	99963796	G	-	DEL	SFRS18	NM_015491	human	genbank	54_36p	-1	validated	frame_shift_del	c.647	p.P216fs	1	NULL	NULL	"(deletion:cds_exon[99963770,99963941])"	no_errors
ENSG00000166104	0	genome.wustl.edu	36	15	60326813	60326813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	60326813	60326813	C	T	SNP	ENSG00000166104	ENST00000299125	human	ensembl	54_36p	-1	known	missense	c.251	p.R84Q	0.09	NULL	NULL	-	no_start_codon
OR52L2P	79274	genome.wustl.edu	36	11	6035139	6035139	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6035139	6035139	G	A	SNP	OR52L2P	ENST00000316540	human	ensembl	54_36p	-1	known	nonsense	c.943	p.Q315*	0.01	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ENSG00000180913	0	genome.wustl.edu	36	11	6106850	6106850	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6106850	6106850	A	T	SNP	ENSG00000180913	ENST00000316517	human	ensembl	54_36p	1	known	silent	c.435	p.T145	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
ENSG00000180909	0	genome.wustl.edu	36	11	6130098	6130098	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	6130098	6130098	G	A	SNP	ENSG00000180909	ENST00000316506	human	ensembl	54_36p	-1	known	silent	c.297	p.H99	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
LOC100129067	100129067	genome.wustl.edu	36	11	61855199	61855199	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	61855199	61855199	A	T	SNP	LOC100129067	XR_038268	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100129141	100129141	genome.wustl.edu	36	2	62613373	62613373	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	62613373	62613373	C	A	SNP	LOC100129141	XR_039484	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100129293	100129293	genome.wustl.edu	36	7	63668086	63668086	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	63668086	63668086	G	T	SNP	LOC100129293	XR_038218	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100130721	100130721	genome.wustl.edu	36	7	64437805	64437805	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	64437805	64437805	C	G	SNP	LOC100130721	XR_037257	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC643827	643827	genome.wustl.edu	36	9	65334887	65334887	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	65334887	65334887	G	A	SNP	LOC643827	XM_001714537	human	genbank	54_36p	1	model	splice_site	c.836-1	e5-1	1	-	-	-	no_errors
LOC100129267	100129267	genome.wustl.edu	36	10	65600387	65600387	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	65600387	65600387	T	C	SNP	LOC100129267	XR_037245	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
LOC100132467	100132467	genome.wustl.edu	36	9	6660198	6660198	+	RNA	SNP	G	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	6660198	6660198	G	T	SNP	LOC100132467	XR_039339	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC441442	441442	genome.wustl.edu	36	9	67847665	67847665	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	67847665	67847665	G	T	SNP	LOC441442	XR_037084	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC441442	441442	genome.wustl.edu	36	9	67848175	67848175	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	67848175	67848175	G	T	SNP	LOC441442	XR_037084	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.99	-	-	-	pseudogene
ENSG00000214552	0	genome.wustl.edu	36	3	68276961	68276961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	68276961	68276961	C	T	SNP	ENSG00000214552	ENST00000398570	human	ensembl	54_36p	1	known	missense	c.118	p.R40C	0.3	HMMPfam_PCI_Csn8	HMMPfam_PCI_Csn8	-	no_errors
LOC100132437	100132437	genome.wustl.edu	36	9	68357723	68357723	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	68357723	68357723	A	G	SNP	LOC100132437	XM_001720808	human	genbank	54_36p	1	model	missense	c.193	p.M65V	1	NULL	NULL	-	no_errors
LRCH4	4034	genome.wustl.edu	36	7	100011832	100011832	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100011832	100011832	G	T	SNP	LRCH4	NM_002319	human	genbank	54_36p	-1	reviewed	missense	c.1603	p.P535T	0	HMMPfam_CH	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMPfam_CH,superfamily_Calponin-homology,HMMSmart_CH"	-	no_errors
FBXO24	26261	genome.wustl.edu	36	7	100025873	100025873	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100025873	100025873	G	C	SNP	FBXO24	NM_033506	human	genbank	54_36p	1	reviewed	missense	c.279	p.Q93H	1	superfamily_F-box domain	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_RCC1/BLIP-II"	-	no_errors
GNB2	2783	genome.wustl.edu	36	7	100113090	100113090	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100113090	100113090	A	G	SNP	GNB2	NM_005273	human	genbank	54_36p	1	reviewed	missense	c.301	p.M101V	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
GNB2	2783	genome.wustl.edu	36	7	100113091	100113091	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100113091	100113091	T	C	SNP	GNB2	NM_005273	human	genbank	54_36p	1	reviewed	missense	c.302	p.M101T	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100190916	100190916	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100190916	100190916	C	A	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	1	known	missense	c.3256	p.H1086N	0	"superfamily_Serine proterase inhibitors,HMMPfam_TIL,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100204256	100204256	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100204256	100204256	A	T	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	1	known	missense	c.5129	p.K1710M	0.35	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SRRT	51593	genome.wustl.edu	36	7	100323649	100323649	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100323649	100323649	C	A	SNP	SRRT	NM_015908	human	genbank	54_36p	1	validated	missense	c.2377	p.Q793K	1	HMMPfam_ARS2	HMMPfam_ARS2	-	no_errors
MUC3B	57876	genome.wustl.edu	36	7	100390002	100390002	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100390002	100390002	G	T	SNP	MUC3B	ENST00000332750	human	ensembl	54_36p	1	known	nonsense	c.1690	p.E564*	0.02	NULL	"superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	-	no_start_codon
MUC3B	57876	genome.wustl.edu	36	7	100390098	100390098	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100390098	100390098	C	A	SNP	MUC3B	ENST00000332750	human	ensembl	54_36p	1	known	missense	c.1786	p.L596I	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_start_codon
MUC17	140453	genome.wustl.edu	36	7	100450151	100450151	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100450151	100450151	G	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.15	p.G5	0.01	NULL	"superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100463481	100463481	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	100463481	100463481	T	C	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.2064	p.T688	0.01	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100468311	100468311	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100468311	100468311	C	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.6894	p.T2298	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100470712	100470712	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100470712	100470712	A	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.9295	p.T3099S	0.06	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	genome.wustl.edu	36	7	100473717	100473717	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100473717	100473717	A	C	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.12300	p.T4100	0.73	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
SERPINE1	5054	genome.wustl.edu	36	7	100560506	100560506	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100560506	100560506	C	T	SNP	SERPINE1	NM_000602	human	genbank	54_36p	1	validated	missense	c.356	p.A119V	1	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN"	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
C7orf52	375607	genome.wustl.edu	36	7	100604696	100604696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100604696	100604696	G	T	SNP	C7orf52	NM_198571	human	genbank	54_36p	-1	predicted	missense	c.113	p.A38D	0.01	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
CLDN15	24146	genome.wustl.edu	36	7	100664359	100664359	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100664359	100664359	C	T	SNP	CLDN15	NM_014343	human	genbank	54_36p	-1	provisional	missense	c.302	p.R101H	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
AZGP1P2	401393	genome.wustl.edu	36	7	100717601	100717601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	100717601	100717601	A	G	SNP	AZGP1P2	ENST00000397935	human	ensembl	54_36p	-1	known	missense	c.220	p.W74R	0.21	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I"	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I"	-	no_errors
MYL10	93408	genome.wustl.edu	36	7	101054248	101054248	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	101054248	101054248	C	T	SNP	MYL10	NM_138403	human	genbank	54_36p	-1	validated	missense	c.95	p.R32Q	1	NULL	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
CUX1	1523	genome.wustl.edu	36	7	101627217	101627217	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	101627217	101627217	T	G	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	silent	c.1806	p.R602	0.19	HMMPfam_CUT	"superfamily_lambda repressor-like DNA-binding domains,HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PRKRIP1	79706	genome.wustl.edu	36	7	101827053	101827053	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	101827053	101827053	C	T	SNP	PRKRIP1	NM_024653	human	genbank	54_36p	1	validated	missense	c.259	p.R87W	1	HMMPfam_DUF1168	HMMPfam_DUF1168	-	no_errors
POLR2J3	548644	genome.wustl.edu	36	7	101997426	101997426	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	101997426	101997426	C	G	SNP	POLR2J3	NM_001097615	human	genbank	54_36p	-1	reviewed	missense	c.102	p.M34I	1	"superfamily_RNAP_RBP11-like,HMMPfam_RNA_pol_L,PatternScan_RNA_POL_L_13KD"	"superfamily_RNAP_RBP11-like,HMMPfam_RNA_pol_L,PatternScan_RNA_POL_L_13KD"	-	no_errors
LRRC17	10234	genome.wustl.edu	36	7	102367234	102367234	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	102367234	102367234	C	T	SNP	LRRC17	NM_001031692	human	genbank	54_36p	1	provisional	silent	c.894	p.N298	1	"superfamily_RNI-like,HMMSmart_SM00369,HMMPfam_LRR_1"	"superfamily_RNI-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00082"	-	no_errors
ARMC10	83787	genome.wustl.edu	36	7	102526015	102526015	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	102526015	102526015	C	T	SNP	ARMC10	NM_031905	human	genbank	54_36p	1	provisional	missense	c.811	p.H271Y	0.01	"HMMPfam_DUF634,superfamily_ARM repeat"	"HMMPfam_DUF634,superfamily_ARM repeat"	-	no_errors
PMPCB	9512	genome.wustl.edu	36	7	102735326	102735326	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	102735326	102735326	G	C	SNP	PMPCB	NM_004279	human	genbank	54_36p	1	reviewed	missense	c.784	p.D262H	0.99	"superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16_C"	"superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C"	-	no_errors
PMPCB	9512	genome.wustl.edu	36	7	102735387	102735387	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	102735387	102735387	G	C	SNP	PMPCB	NM_004279	human	genbank	54_36p	1	reviewed	missense	c.845	p.S282T	1	"HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd"	"PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16"	-	no_errors
RELN	5649	genome.wustl.edu	36	7	103001849	103001849	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	103001849	103001849	A	C	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.4437	p.D1479E	1	NULL	"HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase"	-	no_errors
RELN	5649	genome.wustl.edu	36	7	103063216	103063216	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	103063216	103063216	C	T	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.2357	p.R786K	0.99	NULL	"HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196"	-	no_errors
RINT1	60561	genome.wustl.edu	36	7	104970272	104970272	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	104970272	104970272	T	C	SNP	RINT1	NM_021930	human	genbank	54_36p	1	validated	missense	c.455	p.I152T	0.95	NULL	HMMPfam_RINT1_TIP1	-	no_errors
RINT1	60561	genome.wustl.edu	36	7	104974660	104974660	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	104974660	104974660	G	T	SNP	RINT1	NM_021930	human	genbank	54_36p	1	validated	missense	c.583	p.A195S	1	NULL	HMMPfam_RINT1_TIP1	-	no_errors
PIK3CG	5294	genome.wustl.edu	36	7	106296377	106296377	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	106296377	106296377	C	A	SNP	PIK3CG	NM_002649	human	genbank	54_36p	1	reviewed	missense	c.1135	p.L379I	1	"HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
GPR146	115330	genome.wustl.edu	36	7	1064417	1064417	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	1064417	1064417	C	G	SNP	GPR146	NM_138445	human	genbank	54_36p	1	provisional	missense	c.740	p.T247R	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GPR22	2845	genome.wustl.edu	36	7	106901798	106901798	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	106901798	106901798	G	A	SNP	GPR22	NM_005295	human	genbank	54_36p	1	reviewed	silent	c.57	p.V19	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
BCAP29	55973	genome.wustl.edu	36	7	107008501	107008501	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107008501	107008501	A	T	SNP	BCAP29	NM_001008405	human	genbank	54_36p	1	validated	silent	c.48	p.I16	1	HMMPfam_Bap31	HMMPfam_Bap31	-	no_errors
SLC26A4	5172	genome.wustl.edu	36	7	107129517	107129517	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107129517	107129517	A	G	SNP	SLC26A4	NM_000441	human	genbank	54_36p	1	reviewed	missense	c.1813	p.I605V	1	"superfamily_STAS,HMMPfam_STAS"	"PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
SLC26A4	5172	genome.wustl.edu	36	7	107129654	107129654	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107129654	107129654	T	C	SNP	SLC26A4	NM_000441	human	genbank	54_36p	1	reviewed	silent	c.1950	p.V650	0.99	"HMMPfam_STAS,superfamily_STAS"	"HMMPfam_STAS,superfamily_STAS,HMMPfam_Sulfate_transp,PatternScan_SLC26A"	-	no_errors
SLC26A3	1811	genome.wustl.edu	36	7	107201769	107201769	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107201769	107201769	T	C	SNP	SLC26A3	NM_000111	human	genbank	54_36p	-1	reviewed	missense	c.1839	p.I613M	0.04	"superfamily_STAS,HMMPfam_STAS"	"PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
SLC26A3	1811	genome.wustl.edu	36	7	107204215	107204215	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	107204215	107204215	G	T	SNP	SLC26A3	NM_000111	human	genbank	54_36p	-1	reviewed	missense	c.1595	p.P532Q	0.99	"HMMPfam_STAS,superfamily_STAS"	"HMMPfam_STAS,superfamily_STAS,HMMPfam_Sulfate_transp,PatternScan_SLC26A"	-	no_errors
LAMB1	3912	genome.wustl.edu	36	7	107359937	107359937	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107359937	107359937	G	A	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.4310	p.A1437V	0.97	NULL	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_Prefoldin"	-	no_errors
LAMB1	3912	genome.wustl.edu	36	7	107379875	107379875	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107379875	107379875	G	T	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.3109	p.Q1037K	0.27	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin"	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Prefoldin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin"	-	no_errors
LAMB4	22798	genome.wustl.edu	36	7	107465268	107465268	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	107465268	107465268	C	G	SNP	LAMB4	NM_007356	human	genbank	54_36p	-1	validated	missense	c.4480	p.V1494L	0.91	NULL	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
C7orf66	154907	genome.wustl.edu	36	7	108311757	108311757	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	108311757	108311757	T	C	SNP	C7orf66	NM_001024607	human	genbank	54_36p	-1	predicted	silent	c.69	p.R23	0	NULL	NULL	-	no_errors
C7orf66	154907	genome.wustl.edu	36	7	108311794	108311794	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	108311794	108311794	A	T	SNP	C7orf66	NM_001024607	human	genbank	54_36p	-1	predicted	missense	c.32	p.L11H	0	NULL	NULL	-	no_errors
EIF3IP1	442720	genome.wustl.edu	36	7	109386970	109386970	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	109386970	109386970	G	T	SNP	EIF3IP1	NR_003024	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
EIF3IP1	442720	genome.wustl.edu	36	7	109387396	109387396	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	109387396	109387396	C	T	SNP	EIF3IP1	NR_003024	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.99	-	-	-	pseudogene
DOCK4	9732	genome.wustl.edu	36	7	111217830	111217830	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	111217830	111217830	C	T	SNP	DOCK4	NM_014705	human	genbank	54_36p	-1	reviewed	silent	c.3234	p.Q1078	1	NULL	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
ZNF277	11179	genome.wustl.edu	36	7	111723525	111723525	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	111723525	111723525	C	A	SNP	ZNF277	NM_021994	human	genbank	54_36p	1	validated	missense	c.388	p.Q130K	1	NULL	"HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
C7orf60	154743	genome.wustl.edu	36	7	112322977	112322977	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	112322977	112322977	T	A	SNP	C7orf60	NM_152556	human	genbank	54_36p	-1	validated	missense	c.356	p.D119V	1	NULL	NULL	-	no_errors
GPR85	54329	genome.wustl.edu	36	7	112511041	112511041	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	112511041	112511041	A	G	SNP	GPR85	NM_018970	human	genbank	54_36p	-1	validated	silent	c.972	p.A324	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
PPP1R3A	5506	genome.wustl.edu	36	7	113345820	113345820	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	113345820	113345820	T	A	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.468	p.L156F	1	HMMPfam_CBM_21	HMMPfam_CBM_21	-	no_errors
PPP1R3A	5506	genome.wustl.edu	36	7	113346185	113346185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	113346185	113346185	G	A	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.103	p.P35S	1	NULL	HMMPfam_CBM_21	-	no_errors
ZFAND2A	90637	genome.wustl.edu	36	7	1159339	1159339	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	1159339	1159339	C	-	DEL	ZFAND2A	NM_182491	human	genbank	54_36p	-1	provisional	frame_shift_del	c.330	p.M110fs	1	"HMMSmart_ZnF_AN1,HMMPfam_zf-AN1"	"HMMSmart_ZnF_AN1,HMMPfam_zf-AN1"	"(deletion:cds_exon[1159231,1159386])"	no_errors
THSD7A	221981	genome.wustl.edu	36	7	11642346	11642346	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	11642346	11642346	G	A	SNP	THSD7A	NM_015204	human	genbank	54_36p	-1	validated	nonsense	c.958	p.Q320*	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
ST7	7982	genome.wustl.edu	36	7	116561414	116561414	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	116561414	116561414	A	T	SNP	ST7	NM_021908	human	genbank	54_36p	1	reviewed	missense	c.642	p.E214D	1	HMMPfam_ST7	HMMPfam_ST7	-	no_errors
WNT2	7472	genome.wustl.edu	36	7	116724987	116724987	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	116724987	116724987	A	T	SNP	WNT2	NM_003391	human	genbank	54_36p	-1	reviewed	silent	c.768	p.A256	0.98	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
ASZ1	136991	genome.wustl.edu	36	7	116808353	116808353	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	116808353	116808353	C	G	SNP	ASZ1	NM_130768	human	genbank	54_36p	-1	validated	missense	c.893	p.R298T	0.98	"HMMPfam_SAM_2,superfamily_SAM_homology"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SAM_2,superfamily_SAM_homology"	-	no_errors
CFTR	1080	genome.wustl.edu	36	7	116958238	116958238	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	116958238	116958238	C	A	SNP	CFTR	NM_000492	human	genbank	54_36p	1	reviewed	missense	c.323	p.S108Y	1	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
CTTNBP2	83992	genome.wustl.edu	36	7	117138969	117138969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	117138969	117138969	C	G	SNP	CTTNBP2	NM_033427	human	genbank	54_36p	-1	reviewed	missense	c.4850	p.R1617T	1	NULL	"HMMPfam_CortBP2,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
CTTNBP2	83992	genome.wustl.edu	36	7	117211650	117211650	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	117211650	117211650	T	G	SNP	CTTNBP2	NM_033427	human	genbank	54_36p	-1	reviewed	silent	c.2163	p.G721	1	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_CortBP2"	-	no_errors
KCND2	3751	genome.wustl.edu	36	7	119702341	119702341	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	119702341	119702341	G	A	SNP	KCND2	NM_012281	human	genbank	54_36p	1	reviewed	missense	c.419	p.R140H	1	"superfamily_POZ domain,HMMSmart_SM00225"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
C7orf58	79974	genome.wustl.edu	36	7	120474195	120474195	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	120474195	120474195	A	G	SNP	C7orf58	NM_024913	human	genbank	54_36p	1	validated	missense	c.452	p.D151G	1	NULL	NULL	-	no_errors
C7orf58	79974	genome.wustl.edu	36	7	120555707	120555707	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	120555707	120555707	G	C	SNP	C7orf58	NM_024913	human	genbank	54_36p	1	validated	silent	c.1338	p.L446	0.9	NULL	NULL	-	no_errors
WNT16	51384	genome.wustl.edu	36	7	120766354	120766354	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	120766354	120766354	G	-	DEL	WNT16	NM_057168	human	genbank	54_36p	1	reviewed	frame_shift_del	c.817	p.D273fs	0.92	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	"(deletion:cds_exon[120766171,120766635])"	no_errors
WNT16	51384	genome.wustl.edu	36	7	120766520	120766520	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	120766520	120766520	G	A	SNP	WNT16	NM_057168	human	genbank	54_36p	1	reviewed	missense	c.983	p.G328D	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121438335	121438335	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	121438335	121438335	G	T	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	nonsense	c.1999	p.G667*	0	NULL	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121458776	121458776	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	121458776	121458776	C	T	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	missense	c.5093	p.A1698V	1	superfamily_(Phosphotyrosine protein) phosphatases II	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
PTPRZ1	5803	genome.wustl.edu	36	7	121486093	121486093	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	121486093	121486093	G	A	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	missense	c.6532	p.D2178N	1	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
AASS	10157	genome.wustl.edu	36	7	121545713	121545713	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	121545713	121545713	T	G	SNP	AASS	NM_005763	human	genbank	54_36p	-1	reviewed	missense	c.571	p.S191R	1	superfamily_Formate/glycerate dehydrogenase catalytic domain-like	"superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AlaDh_PNT_N,HMMPfam_AlaDh_PNT_C,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Saccharop_dh,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain"	-	no_errors
FEZF1	389549	genome.wustl.edu	36	7	121731053	121731053	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	121731053	121731053	C	G	SNP	FEZF1	NM_001024613	human	genbank	54_36p	-1	provisional	missense	c.675	p.Q225H	1	NULL	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SLC13A1	6561	genome.wustl.edu	36	7	122596533	122596533	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	122596533	122596533	G	A	SNP	SLC13A1	NM_022444	human	genbank	54_36p	-1	validated	missense	c.458	p.A153V	1	HMMPfam_Na_sulph_symp	"HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE"	-	no_errors
IQUB	154865	genome.wustl.edu	36	7	122939603	122939603	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	122939603	122939603	C	A	SNP	IQUB	NM_178827	human	genbank	54_36p	-1	validated	missense	c.28	p.A10S	0	NULL	"HMMPfam_DUF2021,superfamily_Ubiquitin-like"	-	no_errors
SPAM1	6677	genome.wustl.edu	36	7	123387190	123387190	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	123387190	123387190	C	T	SNP	SPAM1	NM_003117	human	genbank	54_36p	1	reviewed	silent	c.1461	p.S487	0	NULL	"HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat"	-	no_errors
LOC136157	136157	genome.wustl.edu	36	7	123903965	123903965	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	123903965	123903965	C	A	SNP	LOC136157	NM_001085395	human	genbank	54_36p	1	validated	missense	c.305	p.T102N	0.95	HMMPfam_Ssu72	HMMPfam_Ssu72	-	no_errors
GRM8	2918	genome.wustl.edu	36	7	125960745	125960745	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	125960745	125960745	G	T	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	missense	c.1927	p.P643T	1	HMMPfam_7tm_3	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GRM8	2918	genome.wustl.edu	36	7	125961007	125961007	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	125961007	125961007	A	T	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	silent	c.1665	p.L555	0.98	"HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2"	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I"	-	no_errors
SCIN	85477	genome.wustl.edu	36	7	12631265	12631265	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	12631265	12631265	G	A	SNP	SCIN	NM_033128	human	genbank	54_36p	1	validated	missense	c.124	p.A42T	0.02	"superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMSmart_SM00262,HMMPfam_Gelsolin"	"superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
GRM8	2918	genome.wustl.edu	36	7	126670303	126670303	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	126670303	126670303	A	C	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	missense	c.192	p.C64W	1	superfamily_Periplasmic binding protein-like I	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I"	-	no_errors
ZNF800	168850	genome.wustl.edu	36	7	126801698	126801698	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	126801698	126801698	G	A	SNP	ZNF800	NM_176814	human	genbank	54_36p	-1	validated	missense	c.928	p.H310Y	1	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GCC1	79571	genome.wustl.edu	36	7	127010028	127010028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	127010028	127010028	C	T	SNP	GCC1	NM_024523	human	genbank	54_36p	-1	reviewed	missense	c.1604	p.R535Q	1	NULL	"HMMPfam_GRIP,HMMSmart_SM00755"	-	no_errors
PAX4	5078	genome.wustl.edu	36	7	127040334	127040334	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	127040334	127040334	G	C	SNP	PAX4	NM_006193	human	genbank	54_36p	-1	reviewed	silent	c.669	p.L223	1	"superfamily_Homeodomain_like,HMMSmart_HOX"	"superfamily_Homeodomain_like,HMMPfam_PAX,HMMSmart_PAX,PatternScan_PAIRED_1,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
RBM28	55131	genome.wustl.edu	36	7	127740546	127740546	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	127740546	127740546	T	C	SNP	RBM28	NM_018077	human	genbank	54_36p	-1	validated	missense	c.2063	p.K688R	0.98	NULL	"HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1"	-	no_errors
FLNC	2318	genome.wustl.edu	36	7	128271524	128271524	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128271524	128271524	G	T	SNP	FLNC	NM_001458	human	genbank	54_36p	1	reviewed	missense	c.3160	p.V1054L	1	"HMMSmart_SM00557,superfamily_E set domains"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557"	-	no_errors
ATP6V1F	9296	genome.wustl.edu	36	7	128292746	128292746	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128292746	128292746	G	A	SNP	ATP6V1F	NM_004231	human	genbank	54_36p	1	reviewed	missense	c.238	p.A80T	1	HMMPfam_ATP-synt_F	HMMPfam_ATP-synt_F	-	no_errors
TNPO3	23534	genome.wustl.edu	36	7	128399755	128399755	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128399755	128399755	C	T	SNP	TNPO3	NM_012470	human	genbank	54_36p	-1	validated	silent	c.2391	p.R797	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Xpo1"	-	no_errors
TNPO3	23534	genome.wustl.edu	36	7	128442343	128442343	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128442343	128442343	G	T	SNP	TNPO3	NM_012470	human	genbank	54_36p	-1	validated	silent	c.478	p.R160	1	"HMMPfam_Xpo1,superfamily_ARM repeat"	"HMMPfam_Xpo1,superfamily_ARM repeat"	-	no_errors
LOC407835	407835	genome.wustl.edu	36	7	128554053	128554053	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128554053	128554053	C	T	SNP	LOC407835	NR_002144	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.95	-	-	-	pseudogene
AHCYL2	23382	genome.wustl.edu	36	7	128806799	128806799	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128806799	128806799	C	T	SNP	AHCYL2	NM_015328	human	genbank	54_36p	1	validated	nonsense	c.448	p.Q150*	1	NULL	"superfamily_SSF52283,HMMPfam_AdoHcyase,PatternScan_ADOHCYASE_1,superfamily_NAD(P)-bd,HMMPfam_AdoHcyase_NAD,PatternScan_ADOHCYASE_2"	-	no_errors
TMEM209	84928	genome.wustl.edu	36	7	129602659	129602659	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	129602659	129602659	A	T	SNP	TMEM209	NM_032842	human	genbank	54_36p	-1	validated	missense	c.1273	p.S425T	1	HMMPfam_CytochromB561_N	HMMPfam_CytochromB561_N	-	no_errors
MEST	4232	genome.wustl.edu	36	7	129925243	129925243	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	129925243	129925243	C	T	SNP	MEST	NM_002402	human	genbank	54_36p	1	reviewed	nonsense	c.367	p.Q123*	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	-	no_errors
TSGA13	114960	genome.wustl.edu	36	7	130008148	130008148	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	130008148	130008148	C	T	SNP	TSGA13	NM_052933	human	genbank	54_36p	-1	provisional	missense	c.496	p.D166N	0	NULL	NULL	-	no_errors
TSGA13	114960	genome.wustl.edu	36	7	130019032	130019032	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	130019032	130019032	T	G	SNP	TSGA13	NM_052933	human	genbank	54_36p	-1	provisional	silent	c.42	p.S14	0.02	NULL	NULL	-	no_errors
PLXNA4	91584	genome.wustl.edu	36	7	131481867	131481867	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	131481867	131481867	C	T	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.4997	p.G1666E	1	"HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	-	no_errors
PLXNA4	91584	genome.wustl.edu	36	7	131483904	131483904	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	131483904	131483904	C	A	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	nonsense	c.4702	p.E1568*	1	"superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl"	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat"	-	no_errors
EXOC4	60412	genome.wustl.edu	36	7	132588414	132588414	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	132588414	132588414	C	A	SNP	EXOC4	NM_021807	human	genbank	54_36p	1	reviewed	missense	c.17	p.A6D	1	HMMPfam_Sec8_exocyst	"HMMPfam_Sec8_exocyst,PatternScan_DEAH_ATP_HELICASE"	-	no_errors
EXOC4	60412	genome.wustl.edu	36	7	133230893	133230893	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	133230893	133230893	G	A	SNP	EXOC4	NM_021807	human	genbank	54_36p	1	reviewed	missense	c.1736	p.S579N	1	NULL	"PatternScan_DEAH_ATP_HELICASE,HMMPfam_Sec8_exocyst"	-	no_errors
EXOC4	60412	genome.wustl.edu	36	7	133252932	133252932	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	133252932	133252932	A	G	SNP	EXOC4	NM_021807	human	genbank	54_36p	1	reviewed	missense	c.1928	p.D643G	1	NULL	"PatternScan_DEAH_ATP_HELICASE,HMMPfam_Sec8_exocyst"	-	no_errors
AKR1B1	231	genome.wustl.edu	36	7	133782646	133782646	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	133782646	133782646	T	C	SNP	AKR1B1	NM_001628	human	genbank	54_36p	-1	reviewed	missense	c.769	p.N257D	1	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
C7orf49	78996	genome.wustl.edu	36	7	134502124	134502124	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	134502124	134502124	C	A	SNP	C7orf49	NM_024033	human	genbank	54_36p	-1	validated	missense	c.169	p.A57S	0.01	NULL	NULL	-	no_errors
LOC647081	647081	genome.wustl.edu	36	7	134780340	134780340	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	134780340	134780340	T	C	SNP	LOC647081	XR_017490	human	genbank	54_36p	1	model	rna	NULL	NULL	0.16	-	-	-	pseudogene
NUP205	23165	genome.wustl.edu	36	7	134920198	134920198	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	134920198	134920198	A	T	SNP	NUP205	NM_015135	human	genbank	54_36p	1	validated	missense	c.1121	p.E374V	1	NULL	NULL	-	no_errors
CHRM2	1129	genome.wustl.edu	36	7	136350196	136350196	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	136350196	136350196	C	G	SNP	CHRM2	NM_000739	human	genbank	54_36p	1	reviewed	missense	c.44	p.T15R	0.07	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CHRM2	1129	genome.wustl.edu	36	7	136350307	136350307	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	136350307	136350307	G	A	SNP	CHRM2	NM_000739	human	genbank	54_36p	1	reviewed	missense	c.155	p.R52H	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
CHRM2	1129	genome.wustl.edu	36	7	136350436	136350436	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	136350436	136350436	T	G	SNP	CHRM2	NM_000739	human	genbank	54_36p	1	reviewed	missense	c.284	p.V95G	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
CHRM2	1129	genome.wustl.edu	36	7	136351313	136351313	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	136351313	136351313	G	T	SNP	CHRM2	NM_000739	human	genbank	54_36p	1	reviewed	missense	c.1161	p.R387S	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
LOC442727	442727	genome.wustl.edu	36	7	137739747	137739747	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	137739747	137739747	T	C	SNP	LOC442727	XR_017503	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
TRIM24	8805	genome.wustl.edu	36	7	137920089	137920089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	137920089	137920089	G	C	SNP	TRIM24	NM_015905	human	genbank	54_36p	1	reviewed	missense	c.3006	p.K1002N	1	"superfamily_Bromodomain,HMMSmart_SM00297"	###############################################################################################################################################################################################################################################################	-	no_errors
ZC3HAV1	56829	genome.wustl.edu	36	7	138419274	138419274	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	138419274	138419274	G	T	SNP	ZC3HAV1	NM_020119	human	genbank	54_36p	-1	reviewed	missense	c.489	p.N163K	0	NULL	"HMMPfam_zf-CCCH,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
UBN2	254048	genome.wustl.edu	36	7	138596723	138596724	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	138596723	138596724	CA	-	DEL	UBN2	NM_173569	human	genbank	54_36p	1	validated	frame_shift_del	c.842_843	p.L282fs	0.000:0.000	NULL	PatternScan_TUBULIN	"(deletion:cds_exon[138596538,138597027])"	no_errors
HIPK2	28996	genome.wustl.edu	36	7	138935823	138935823	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	138935823	138935823	G	A	SNP	HIPK2	NM_022740	human	genbank	54_36p	-1	validated	missense	c.1166	p.T389I	1	NULL	"HMMPfam_Pkinase,superfamily_Kinase_like"	-	no_errors
HIPK2	28996	genome.wustl.edu	36	7	138949750	138949750	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	138949750	138949750	G	C	SNP	HIPK2	NM_022740	human	genbank	54_36p	-1	validated	silent	c.663	p.S221	1	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
LOC653052	653052	genome.wustl.edu	36	7	139063067	139063067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	139063067	139063067	C	T	SNP	LOC653052	XM_925800	human	genbank	54_36p	-1	model	missense	c.253	p.V85I	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TBXAS1	6916	genome.wustl.edu	36	7	139299719	139299719	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	139299719	139299719	C	G	SNP	TBXAS1	NM_001061	human	genbank	54_36p	1	reviewed	missense	c.537	p.I179M	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
JHDM1D	80853	genome.wustl.edu	36	7	139443277	139443277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	139443277	139443277	C	T	SNP	JHDM1D	NM_030647	human	genbank	54_36p	-1	provisional	missense	c.2056	p.D686N	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_EGF_2,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
SLC37A3	84255	genome.wustl.edu	36	7	139728729	139728729	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	139728729	139728729	C	T	SNP	SLC37A3	NM_207113	human	genbank	54_36p	-1	validated	missense	c.67	p.V23M	0.84	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
MKRN1	23608	genome.wustl.edu	36	7	139801397	139801397	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	139801397	139801397	C	G	SNP	MKRN1	NM_013446	human	genbank	54_36p	-1	validated	missense	c.1203	p.Q401H	1	NULL	"superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
DENND2A	27147	genome.wustl.edu	36	7	139890930	139890930	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	139890930	139890930	G	T	SNP	DENND2A	NM_015689	human	genbank	54_36p	-1	validated	missense	c.2284	p.L762M	1	"HMMPfam_DENN,HMMSmart_SM00799"	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801"	-	no_errors
DENND2A	27147	genome.wustl.edu	36	7	139947739	139947739	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	139947739	139947739	A	C	SNP	DENND2A	NM_015689	human	genbank	54_36p	-1	validated	missense	c.928	p.S310A	1	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800"	-	no_errors
BRAF	673	genome.wustl.edu	36	7	140095638	140095638	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	140095638	140095638	G	C	SNP	BRAF	NM_004333	human	genbank	54_36p	-1	reviewed	nonsense	c.1910	p.S637*	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
SSBP1	6742	genome.wustl.edu	36	7	141089911	141089911	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141089911	141089911	T	G	SNP	SSBP1	NM_003143	human	genbank	54_36p	1	validated	missense	c.167	p.I56R	1	"superfamily_Nucleic acid-binding proteins,HMMPfam_SSB"	"superfamily_Nucleic acid-binding proteins,HMMPfam_SSB"	-	no_errors
MGAM	8972	genome.wustl.edu	36	7	141396976	141396976	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141396976	141396976	A	G	SNP	MGAM	NM_004668	human	genbank	54_36p	1	reviewed	missense	c.2648	p.E883G	0.01	NULL	"HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31"	-	no_errors
MGAM	8972	genome.wustl.edu	36	7	141405774	141405774	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141405774	141405774	C	A	SNP	MGAM	NM_004668	human	genbank	54_36p	1	reviewed	silent	c.3853	p.R1285	1	HMMPfam_Glyco_hydro_31	"HMMPfam_Glyco_hydro_31,HMMPfam_Trefoil"	-	no_errors
uc003vym.2	0	genome.wustl.edu	36	7	141819621	141819621	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	141819621	141819621	C	A	SNP	uc003vym.2	ENST00000390368	human	ensembl	54_36p	1	known	missense	c.52	p.P18T	0	NULL	"HMMPfam_V-set,superfamily_SSF48726"	-	no_stop_codon:bad_bp_length_for_coding_region
PRSS2	5645	genome.wustl.edu	36	7	142180011	142180011	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142180011	142180011	C	G	SNP	PRSS2	NM_002770	human	genbank	54_36p	1	reviewed	missense	c.200	p.S67C	0.99	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
KEL	3792	genome.wustl.edu	36	7	142351551	142351551	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142351551	142351551	G	A	SNP	KEL	NM_000420	human	genbank	54_36p	-1	reviewed	missense	c.1472	p.A491V	0.01	superfamily_Metalloproteases (zincins) catalytic domain	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
KEL	3792	genome.wustl.edu	36	7	142351606	142351606	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142351606	142351606	C	A	SNP	KEL	NM_000420	human	genbank	54_36p	-1	reviewed	missense	c.1417	p.A473S	0.11	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
OR6V1	346517	genome.wustl.edu	36	7	142460290	142460290	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142460290	142460290	C	A	SNP	OR6V1	NM_001001667	human	genbank	54_36p	1	provisional	missense	c.731	p.T244K	0.03	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PIP	5304	genome.wustl.edu	36	7	142546374	142546374	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142546374	142546374	A	G	SNP	PIP	NM_002652	human	genbank	54_36p	1	validated	missense	c.286	p.K96E	0	HMMPfam_SVA	HMMPfam_SVA	-	no_errors
EPHA1	2041	genome.wustl.edu	36	7	142798707	142798707	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142798707	142798707	G	A	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	missense	c.2896	p.R966C	1	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA1	2041	genome.wustl.edu	36	7	142798911	142798911	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142798911	142798911	G	C	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	missense	c.2776	p.R926G	0.94	"HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA1	2041	genome.wustl.edu	36	7	142802352	142802352	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142802352	142802352	A	G	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	missense	c.2129	p.L710P	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
LOC441294	441294	genome.wustl.edu	36	7	142980478	142980478	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	142980478	142980478	A	C	SNP	LOC441294	NM_001008747	human	genbank	54_36p	1	predicted	missense	c.1446	p.E482D	1	NULL	NULL	-	no_errors
OR2F2	135948	genome.wustl.edu	36	7	143263482	143263482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	143263482	143263482	C	G	SNP	OR2F2	NM_001004685	human	genbank	54_36p	1	provisional	missense	c.224	p.T75R	0.78	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2F1	26211	genome.wustl.edu	36	7	143288443	143288443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	143288443	143288443	G	T	SNP	OR2F1	NM_012369	human	genbank	54_36p	1	provisional	missense	c.447	p.W149C	0.99	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2A5	393046	genome.wustl.edu	36	7	143378730	143378730	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	143378730	143378730	C	A	SNP	OR2A5	NM_012365	human	genbank	54_36p	1	provisional	silent	c.303	p.T101	0.57	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2A12	346525	genome.wustl.edu	36	7	143423923	143423923	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	143423923	143423923	A	G	SNP	OR2A12	NM_001004135	human	genbank	54_36p	1	provisional	missense	c.790	p.S264G	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CTAGE4	100128553	genome.wustl.edu	36	7	143512235	143512235	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	143512235	143512235	G	C	SNP	CTAGE4	XR_038147	human	genbank	54_36p	1	model	rna	NULL	NULL	0.44	-	-	-	no_errors
CTAGE4	100128553	genome.wustl.edu	36	7	143513727	143513727	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	143513727	143513727	C	T	SNP	CTAGE4	XR_038147	human	genbank	54_36p	1	model	rna	NULL	NULL	0.91	-	-	-	no_errors
TPK1	27010	genome.wustl.edu	36	7	143919487	143919487	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	143919487	143919487	T	C	SNP	TPK1	NM_022445	human	genbank	54_36p	-1	reviewed	missense	c.463	p.I155V	0.99	"superfamily_TPK_catalytic,HMMPfam_TPK_catalytic"	"superfamily_TPK_catalytic,HMMPfam_TPK_catalytic,superfamily_TPK_B1_bd,HMMPfam_TPK_B1_binding"	-	no_errors
LOC100132804	100132804	genome.wustl.edu	36	7	143976549	143976549	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	143976549	143976549	G	A	SNP	LOC100132804	XR_038193	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
CNTNAP2	26047	genome.wustl.edu	36	7	146460357	146460357	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	146460357	146460357	A	C	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.1171	p.N391H	0.02	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
DGKB	1607	genome.wustl.edu	36	7	14700296	14700296	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	14700296	14700296	C	T	SNP	DGKB	NM_004080	human	genbank	54_36p	-1	reviewed	missense	c.640	p.V214M	1	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
CNTNAP2	26047	genome.wustl.edu	36	7	147475602	147475602	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	147475602	147475602	C	A	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.2641	p.Q881K	1	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
PDIA4	9601	genome.wustl.edu	36	7	148332034	148332034	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	148332034	148332034	G	C	SNP	PDIA4	NM_004911	human	genbank	54_36p	-1	validated	missense	c.1723	p.Q575E	0.96	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1"	-	no_errors
ZNF425	155054	genome.wustl.edu	36	7	148432349	148432349	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	148432349	148432349	T	C	SNP	ZNF425	NM_001001661	human	genbank	54_36p	-1	provisional	missense	c.1547	p.H516R	0.88	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF425	155054	genome.wustl.edu	36	7	148432952	148432952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	148432952	148432952	C	T	SNP	ZNF425	NM_001001661	human	genbank	54_36p	-1	provisional	missense	c.944	p.C315Y	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF398	57541	genome.wustl.edu	36	7	148482062	148482062	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	148482062	148482062	A	G	SNP	ZNF398	NM_170686	human	genbank	54_36p	1	reviewed	silent	c.117	p.A39	0.9	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF862	643641	genome.wustl.edu	36	7	149176253	149176253	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	149176253	149176253	G	T	SNP	ZNF862	NM_001099220	human	genbank	54_36p	1	provisional	silent	c.738	p.G246	1	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00597,HMMPfam_hATC"	-	no_errors
C7orf29	113763	genome.wustl.edu	36	7	149658736	149658736	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	149658736	149658736	G	C	SNP	C7orf29	NM_138434	human	genbank	54_36p	1	validated	missense	c.310	p.V104L	0.85	NULL	NULL	-	no_errors
GIMAP8	155038	genome.wustl.edu	36	7	149805162	149805162	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	149805162	149805162	G	A	SNP	GIMAP8	NM_175571	human	genbank	54_36p	1	reviewed	silent	c.1359	p.A453	0.72	"superfamily_SSF52540,HMMPfam_AIG1"	"superfamily_SSF52540,HMMPfam_AIG1"	-	no_errors
GIMAP6	474344	genome.wustl.edu	36	7	149955985	149955985	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	149955985	149955985	G	T	SNP	GIMAP6	NM_024711	human	genbank	54_36p	-1	reviewed	missense	c.634	p.L212M	0.79	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1"	-	no_errors
GIMAP5	55340	genome.wustl.edu	36	7	150070313	150070313	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	150070313	150070313	C	G	SNP	GIMAP5	NM_018384	human	genbank	54_36p	1	reviewed	silent	c.153	p.P51	0	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1"	-	no_errors
ABP1	26	genome.wustl.edu	36	7	150185135	150185135	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	150185135	150185135	C	A	SNP	ABP1	NM_001091	human	genbank	54_36p	1	reviewed	missense	c.644	p.T215N	0.98	"superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN3"	"superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2"	-	no_errors
ABP1	26	genome.wustl.edu	36	7	150188644	150188644	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	150188644	150188644	T	C	SNP	ABP1	NM_001091	human	genbank	54_36p	1	reviewed	missense	c.1979	p.I660T	1	"HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain"	"PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region"	-	no_errors
KCNH2	3757	genome.wustl.edu	36	7	150280856	150280856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	150280856	150280856	C	T	SNP	KCNH2	NM_000238	human	genbank	54_36p	-1	reviewed	missense	c.1147	p.D383N	0.99	NULL	"superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
SMARCD3	6604	genome.wustl.edu	36	7	150569567	150569567	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	150569567	150569567	T	A	SNP	SMARCD3	NM_001003801	human	genbank	54_36p	-1	reviewed	missense	c.883	p.R295W	1	"superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151"	"superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151"	-	no_errors
GALNTL5	168391	genome.wustl.edu	36	7	151342712	151342712	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151342712	151342712	A	G	SNP	GALNTL5	NM_145292	human	genbank	54_36p	1	provisional	silent	c.1077	p.G359	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	-	no_errors
GALNTL5	168391	genome.wustl.edu	36	7	151347688	151347688	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151347688	151347688	G	A	SNP	GALNTL5	NM_145292	human	genbank	54_36p	1	provisional	missense	c.1201	p.G401S	0.42	superfamily_Nucleotide-diphospho-sugar transferases	"HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases"	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151482139	151482139	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151482139	151482139	G	A	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	silent	c.12165	p.I4055	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151482376	151482376	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151482376	151482376	G	A	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	silent	c.12048	p.S4016	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151491100	151491100	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151491100	151491100	G	C	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.10495	p.Q3499E	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151491555	151491555	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151491555	151491555	T	C	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.10040	p.N3347S	0.63	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL3	58508	genome.wustl.edu	36	7	151593143	151593143	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151593143	151593143	T	G	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.1097	p.Y366S	1	"HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	###############################################################################################################################################################################################################################################################	-	no_errors
CCT8L1	155100	genome.wustl.edu	36	7	151774449	151774449	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	151774449	151774449	T	A	SNP	CCT8L1	NM_001029866	human	genbank	54_36p	1	inferred	missense	c.955	p.S319T	0.17	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029"	"PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029"	-	no_errors
DPP6	1804	genome.wustl.edu	36	7	154010382	154010382	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	154010382	154010382	T	A	SNP	DPP6	ENST00000406326	human	ensembl	54_36p	1	known	nonsense	c.717	p.C239*	0	NULL	superfamily_SSF82171	-	no_errors
HTR5A	3361	genome.wustl.edu	36	7	154506945	154506945	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	154506945	154506945	T	G	SNP	HTR5A	NM_024012	human	genbank	54_36p	1	reviewed	missense	c.889	p.C297G	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RBM33	155435	genome.wustl.edu	36	7	155230630	155230630	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	155230630	155230630	C	G	SNP	RBM33	NM_053043	human	genbank	54_36p	1	validated	nonsense	c.2552	p.S851*	0	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360"	-	no_errors
UBE3C	9690	genome.wustl.edu	36	7	156733849	156733849	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	156733849	156733849	G	A	SNP	UBE3C	NM_014671	human	genbank	54_36p	1	validated	silent	c.2508	p.E836	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
DNAJB6	10049	genome.wustl.edu	36	7	156870413	156870413	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	156870413	156870413	G	A	SNP	DNAJB6	NM_058246	human	genbank	54_36p	1	reviewed	silent	c.570	p.S190	0.66	NULL	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1"	-	no_errors
DNAJB6	10049	genome.wustl.edu	36	7	156871070	156871070	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	156871070	156871070	A	T	SNP	DNAJB6	NM_005494	human	genbank	54_36p	1	reviewed	missense	c.695	p.K232M	1	NULL	"HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1"	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157054389	157054389	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	157054389	157054389	G	A	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	silent	c.2868	p.V956	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157080742	157080742	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	157080742	157080742	C	T	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	silent	c.2445	p.A815	0.69	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
PTPRN2	5799	genome.wustl.edu	36	7	157652543	157652543	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	157652543	157652543	C	G	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	missense	c.751	p.A251P	0.73	NULL	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
BZW2	28969	genome.wustl.edu	36	7	16701010	16701021	+	In_Frame_Del	DEL	TGTGGATCATTT	TGTGGATCATTT	-	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	TGTGGATCATTT	TGTGGATCATTT	TGTGGATCATTT	-	TGTGGATCATTT	TGTGGATCATTT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	16701010	16701021	TGTGGATCATTT	-	DEL	BZW2	NM_014038	human	genbank	54_36p	1	provisional	in_frame_del	c.678_689	p.VDHF227in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000	NULL	"superfamily_ARM repeat,HMMSmart_SM00515,HMMPfam_W2"	"(deletion:cds_exon[16700984,16701154])"	no_errors
PRPS1L1	221823	genome.wustl.edu	36	7	18033759	18033759	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	18033759	18033759	T	C	SNP	PRPS1L1	NM_175886	human	genbank	54_36p	-1	reviewed	missense	c.172	p.S58G	1	NULL	"superfamily_PRTase-like,PatternScan_PRPP_SYNTHETASE,HMMPfam_Pribosyltran"	-	no_start_codon
PRPS1L1	221823	genome.wustl.edu	36	7	18033786	18033786	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	18033786	18033786	G	A	SNP	PRPS1L1	NM_175886	human	genbank	54_36p	-1	reviewed	missense	c.145	p.R49C	1	NULL	"HMMPfam_Pribosyltran,PatternScan_PRPP_SYNTHETASE,superfamily_PRTase-like"	-	no_start_codon
TWISTNB	221830	genome.wustl.edu	36	7	19704534	19704534	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	19704534	19704534	C	G	SNP	TWISTNB	NM_001002926	human	genbank	54_36p	-1	validated	missense	c.947	p.S316T	0.95	NULL	HMMPfam_RNA_pol_Rpb7_N	-	no_errors
MACC1	346389	genome.wustl.edu	36	7	20166166	20166166	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	20166166	20166166	A	T	SNP	MACC1	NM_182762	human	genbank	54_36p	-1	validated	missense	c.343	p.S115T	1	NULL	"HMMPfam_SH3_2,superfamily_DEATH domain"	-	no_errors
DNAH11	8701	genome.wustl.edu	36	7	21814035	21814035	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	21814035	21814035	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.10196	p.R3399H	1	NULL	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy"	-	no_errors
DNAH11	8701	genome.wustl.edu	36	7	21872754	21872754	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	21872754	21872754	A	C	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.11659	p.K3887Q	1	HMMPfam_Dynein_heavy	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RAPGEF5	9771	genome.wustl.edu	36	7	22314494	22314494	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	22314494	22314494	G	A	SNP	RAPGEF5	NM_012294	human	genbank	54_36p	-1	validated	silent	c.210	p.G70	0.95	superfamily_Winged helix DNA-binding domain	"superfamily_Winged helix DNA-binding domain,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
SNX8	29886	genome.wustl.edu	36	7	2270533	2270533	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	2270533	2270533	G	T	SNP	SNX8	NM_013321	human	genbank	54_36p	-1	provisional	silent	c.708	p.R236	0.96	NULL	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain"	-	no_errors
NUPL2	11097	genome.wustl.edu	36	7	23206653	23206653	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	23206653	23206653	G	A	SNP	NUPL2	NM_007342	human	genbank	54_36p	1	validated	missense	c.1036	p.G346S	0.5	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
IGF2BP3	10643	genome.wustl.edu	36	7	23349916	23349916	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	23349916	23349916	C	T	SNP	IGF2BP3	NM_006547	human	genbank	54_36p	-1	reviewed	silent	c.1023	p.E341	1	"superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	-	no_errors
IGF2BP3	10643	genome.wustl.edu	36	7	23357590	23357590	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	23357590	23357590	C	A	SNP	IGF2BP3	NM_006547	human	genbank	54_36p	-1	reviewed	missense	c.542	p.R181M	1	superfamily_RNA-binding domain RBD	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),superfamily_RNA-binding domain RBD"	-	no_errors
TRA2A	29896	genome.wustl.edu	36	7	23527918	23527918	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	23527918	23527918	C	G	SNP	TRA2A	NM_013293	human	genbank	54_36p	-1	reviewed	missense	c.103	p.G35R	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
CLK2P	1197	genome.wustl.edu	36	7	23591232	23591232	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	23591232	23591232	C	T	SNP	CLK2P	NR_002711	human	genbank	54_36p	-1	validated	rna	NULL	NULL	1	-	-	-	pseudogene
STK31	56164	genome.wustl.edu	36	7	23741746	23741746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	23741746	23741746	C	G	SNP	STK31	NM_031414	human	genbank	54_36p	1	reviewed	missense	c.548	p.S183C	0.8	NULL	"HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	-	no_errors
STK31	56164	genome.wustl.edu	36	7	23777191	23777191	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	23777191	23777191	A	G	SNP	STK31	NM_031414	human	genbank	54_36p	1	reviewed	missense	c.1756	p.S586G	0.99	NULL	"HMMSmart_SM00220,HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Protein kinase-like (PK-like),superfamily_Tudor/PWWP/MBT"	-	no_errors
DFNA5	1687	genome.wustl.edu	36	7	24750786	24750786	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	24750786	24750786	G	A	SNP	DFNA5	NM_004403	human	genbank	54_36p	-1	reviewed	silent	c.324	p.R108	0.03	HMMPfam_Gasdermin	HMMPfam_Gasdermin	-	no_errors
NPVF	64111	genome.wustl.edu	36	7	25234538	25234538	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	25234538	25234538	T	A	SNP	NPVF	NM_022150	human	genbank	54_36p	-1	validated	missense	c.46	p.T16S	1	NULL	NULL	-	no_errors
NFE2L3	9603	genome.wustl.edu	36	7	26190738	26190738	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	26190738	26190738	G	T	SNP	NFE2L3	NM_004289	human	genbank	54_36p	1	reviewed	missense	c.895	p.A299S	0.01	NULL	"superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC"	-	no_errors
HNRNPA2B1	3181	genome.wustl.edu	36	7	26199751	26199751	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	26199751	26199751	G	C	SNP	HNRPA2B1	ENST00000396395	human	ensembl	54_36p	-1	known	missense	c.647	p.A216G	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
CBX3	11335	genome.wustl.edu	36	7	26209145	26209145	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	26209145	26209145	T	G	SNP	CBX3	NM_007276	human	genbank	54_36p	1	reviewed	missense	c.2	p.M1R	1	NULL	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,HMMSmart_SM00300,HMMPfam_Chromo_shadow"	-	no_errors
HOXA1	3198	genome.wustl.edu	36	7	27102010	27102010	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	27102010	27102010	C	G	SNP	HOXA1	NM_005522	human	genbank	54_36p	-1	reviewed	missense	c.47	p.S16T	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXA2	3199	genome.wustl.edu	36	7	27106929	27106929	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	27106929	27106929	T	C	SNP	HOXA2	NM_006735	human	genbank	54_36p	-1	reviewed	missense	c.1072	p.S358G	1	NULL	"PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXA6	3203	genome.wustl.edu	36	7	27153876	27153876	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	27153876	27153876	C	T	SNP	HOXA6	NM_024014	human	genbank	54_36p	-1	reviewed	silent	c.18	p.V6	1	NULL	"PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
GNA12	2768	genome.wustl.edu	36	7	2737783	2737783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	2737783	2737783	C	T	SNP	GNA12	NM_007353	human	genbank	54_36p	-1	validated	missense	c.704	p.R235H	1	"HMMPfam_G-alpha,superfamily_SSF52540"	"HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert"	-	no_errors
CPVL	54504	genome.wustl.edu	36	7	29077912	29077912	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	29077912	29077912	A	C	SNP	CPVL	NM_019029	human	genbank	54_36p	-1	reviewed	splice_site	c.864+2	e8+2	1	-	-	-	no_errors
CHN2	1124	genome.wustl.edu	36	7	29406693	29406693	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	29406693	29406693	C	T	SNP	CHN2	ENST00000409350	human	ensembl	54_36p	1	known	missense	c.251	p.T84I	0.96	NULL	NULL	-	no_errors
ADCYAP1R1	117	genome.wustl.edu	36	7	31090934	31090934	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	31090934	31090934	G	-	DEL	ADCYAP1R1	NM_001118	human	genbank	54_36p	1	reviewed	frame_shift_del	c.496	p.V166fs	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2"	"superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	"(deletion:cds_exon[31090877,31090974])"	no_errors
NEUROD6	63974	genome.wustl.edu	36	7	31344459	31344459	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	31344459	31344459	C	T	SNP	NEUROD6	NM_022728	human	genbank	54_36p	-1	provisional	missense	c.949	p.D317N	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
CCDC129	223075	genome.wustl.edu	36	7	31584261	31584261	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	31584261	31584261	C	T	SNP	CCDC129	NM_194300	human	genbank	54_36p	1	validated	silent	c.858	p.P286	0	NULL	PatternScan_PA2_HIS	-	no_errors
CCDC129	223075	genome.wustl.edu	36	7	31584509	31584509	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	31584509	31584509	C	G	SNP	CCDC129	NM_194300	human	genbank	54_36p	1	validated	missense	c.1106	p.T369S	0.01	NULL	PatternScan_PA2_HIS	-	no_errors
C7orf16	10842	genome.wustl.edu	36	7	31713361	31713361	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	31713361	31713361	A	G	SNP	C7orf16	NM_006658	human	genbank	54_36p	1	validated	missense	c.407	p.D136G	0.91	NULL	NULL	-	no_errors
BBS9	27241	genome.wustl.edu	36	7	33342684	33342684	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	33342684	33342684	G	T	SNP	BBS9	NM_198428	human	genbank	54_36p	1	reviewed	nonsense	c.1123	p.E375*	1	NULL	NULL	-	no_errors
BBS9	27241	genome.wustl.edu	36	7	33364087	33364087	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	33364087	33364087	A	G	SNP	BBS9	NM_198428	human	genbank	54_36p	1	reviewed	missense	c.1648	p.I550V	1	NULL	NULL	-	no_errors
BMPER	168667	genome.wustl.edu	36	7	33943483	33943483	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	33943483	33943483	C	G	SNP	BMPER	NM_133468	human	genbank	54_36p	1	validated	missense	c.277	p.L93V	1	"HMMSmart_VWC,PatternScan_VWFC_1"	"HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL"	-	no_errors
BMPER	168667	genome.wustl.edu	36	7	34159392	34159392	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	34159392	34159392	C	A	SNP	BMPER	NM_133468	human	genbank	54_36p	1	validated	silent	c.2040	p.V680	0.99	"superfamily_Cysrich_TIL,HMMPfam_TIL"	"HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
DPY19L2P1	554236	genome.wustl.edu	36	7	35097826	35097826	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	35097826	35097826	C	G	SNP	DPY19L2P1	NR_002833	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0	-	-	-	pseudogene
ANLN	54443	genome.wustl.edu	36	7	36433083	36433083	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	36433083	36433083	G	A	SNP	ANLN	NM_018685	human	genbank	54_36p	1	validated	missense	c.2804	p.R935Q	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
ANLN	54443	genome.wustl.edu	36	7	36449898	36449898	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	36449898	36449898	G	C	SNP	ANLN	NM_018685	human	genbank	54_36p	1	validated	missense	c.2980	p.E994Q	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
ELMO1	9844	genome.wustl.edu	36	7	37219579	37219579	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	37219579	37219579	G	A	SNP	ELMO1	NM_014800	human	genbank	54_36p	-1	reviewed	silent	c.840	p.I280	1	NULL	"superfamily_ARM repeat,HMMPfam_ELMO_CED12,superfamily_PH domain-like"	-	no_errors
TXNDC3	51314	genome.wustl.edu	36	7	37874001	37874001	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	37874001	37874001	G	T	SNP	TXNDC3	NM_016616	human	genbank	54_36p	1	validated	missense	c.794	p.G265V	0	superfamily_NDK	"PatternScan_NDP_KINASES,HMMPfam_Thioredoxin,superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1,superfamily_NDK,HMMSmart_NDK,HMMPfam_NDK"	-	no_errors
EPDR1	54749	genome.wustl.edu	36	7	37926788	37926800	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	37926788	37926800	AGGCAGTGGCAGC	-	DEL	EPDR1	NM_017549	human	genbank	54_36p	1	reviewed	frame_shift_del	c.82_94	p.Q31fs	0.083:0.084:0.084:0.084:0.084:0.084:0.083:0.082:0.080:0.077:0.074:0.070:0.065	NULL	"HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2"	"(deletion:cds_exon[37926707,37927335])"	no_errors
STARD3NL	83930	genome.wustl.edu	36	7	38223158	38223158	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	38223158	38223158	C	T	SNP	STARD3NL	NM_032016	human	genbank	54_36p	1	provisional	missense	c.389	p.T130M	1	HMMPfam_MENTAL	HMMPfam_MENTAL	-	no_errors
AMPH	273	genome.wustl.edu	36	7	38395993	38395993	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	38395993	38395993	A	G	SNP	AMPH	NM_001635	human	genbank	54_36p	-1	reviewed	silent	c.1917	p.D639	1	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
C7orf10	79783	genome.wustl.edu	36	7	40280676	40280676	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	40280676	40280676	C	T	SNP	C7orf10	NM_024728	human	genbank	54_36p	1	predicted	missense	c.526	p.L176F	1	"superfamily_CoA-Trfase_fam_III,HMMPfam_CoA_transf_3"	"superfamily_CoA-Trfase_fam_III,HMMPfam_CoA_transf_3"	-	no_errors
GLI3	2737	genome.wustl.edu	36	7	41978556	41978556	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	41978556	41978556	G	C	SNP	GLI3	NM_000168	human	genbank	54_36p	-1	reviewed	missense	c.2008	p.Q670E	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HECW1	23072	genome.wustl.edu	36	7	43499238	43499238	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	43499238	43499238	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	missense	c.3371	p.R1124H	1	NULL	"HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
HECW1	23072	genome.wustl.edu	36	7	43558412	43558412	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	43558412	43558412	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	missense	c.4462	p.A1488T	0.92	"HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT"	"HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB"	-	no_errors
BLVRA	644	genome.wustl.edu	36	7	43813141	43813141	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	43813141	43813141	C	T	SNP	BLVRA	NM_000712	human	genbank	54_36p	1	validated	nonsense	c.673	p.R225*	0.76	"superfamily_SSF55347,HMMPfam_Biliv-reduc_cat"	"superfamily_NAD(P)-bd,HMMPfam_GFO_IDH_MocA,superfamily_SSF55347,HMMPfam_Biliv-reduc_cat"	-	no_errors
POLM	27434	genome.wustl.edu	36	7	44087037	44087037	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	44087037	44087037	G	A	SNP	POLM	NM_013284	human	genbank	54_36p	-1	validated	silent	c.192	p.S64	0.01	"HMMSmart_BRCT,superfamily_BRCT"	"HMMSmart_BRCT,superfamily_BRCT,superfamily_DNApol_B_N_like,HMMSmart_POLXc,superfamily_DNA_pol_lambd_fingers_domain,HMMPfam_DNA_pol_lambd_f,superfamily_SSF81301,PatternScan_DNA_POLYMERASE_X"	-	no_errors
POLD2	5425	genome.wustl.edu	36	7	44122263	44122263	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	44122263	44122263	T	C	SNP	POLD2	NM_006230	human	genbank	54_36p	-1	validated	missense	c.995	p.Y332C	1	HMMPfam_DNA_pol_E_B	HMMPfam_DNA_pol_E_B	-	no_errors
CAMK2B	816	genome.wustl.edu	36	7	44247903	44247903	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	44247903	44247903	C	T	SNP	CAMK2B	NM_001220	human	genbank	54_36p	-1	reviewed	missense	c.824	p.R275H	1	superfamily_Kinase_like	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF54427,HMMPfam_CaMKII_AD"	-	no_errors
NPC1L1	29881	genome.wustl.edu	36	7	44522980	44522980	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	44522980	44522980	G	A	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	silent	c.3447	p.P1149	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
ADCY1	107	genome.wustl.edu	36	7	45684099	45684099	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	45684099	45684099	G	A	SNP	ADCY1	NM_021116	human	genbank	54_36p	1	reviewed	missense	c.1712	p.R571H	1	NULL	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
TNS3	64759	genome.wustl.edu	36	7	47406910	47406910	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	47406910	47406910	T	G	SNP	TNS3	NM_022748	human	genbank	54_36p	-1	validated	missense	c.850	p.K284Q	1	"HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PTB"	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47843084	47843084	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	47843084	47843084	G	C	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.5903	p.A1968G	0.06	NULL	"HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel"	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47853061	47853061	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	47853061	47853061	C	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	silent	c.5094	p.E1698	0.62	NULL	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47872723	47872723	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	47872723	47872723	A	C	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.3911	p.L1304R	0.96	NULL	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
PKD1L1	168507	genome.wustl.edu	36	7	47900115	47900115	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	47900115	47900115	G	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.2338	p.P780T	0.47	HMMPfam_REJ	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
C7orf57	136288	genome.wustl.edu	36	7	48047516	48047516	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	48047516	48047516	C	T	SNP	C7orf57	NM_001100159	human	genbank	54_36p	1	validated	missense	c.116	p.S39F	0.94	NULL	NULL	-	no_errors
ABCA13	154664	genome.wustl.edu	36	7	48256090	48256090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	48256090	48256090	G	T	SNP	ABCA13	ENST00000319379	human	ensembl	54_36p	1	known	missense	c.1411	p.G471C	0.01	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	-	no_start_codon
ABCA13	154664	genome.wustl.edu	36	7	48284358	48284358	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	48284358	48284358	T	A	SNP	ABCA13	NM_152701	human	genbank	54_36p	1	reviewed	missense	c.4386	p.S1462R	0.01	NULL	PatternScan_SERPIN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ABCA13	154664	genome.wustl.edu	36	7	48288863	48288863	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	48288863	48288863	G	T	SNP	ABCA13	NM_152701	human	genbank	54_36p	1	reviewed	missense	c.7363	p.V2455L	0	NULL	PatternScan_SERPIN	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FIGNL1	63979	genome.wustl.edu	36	7	50482269	50482269	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	50482269	50482269	C	A	SNP	FIGNL1	NM_001042762	human	genbank	54_36p	-1	validated	missense	c.211	p.D71Y	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C"	-	no_errors
DDC	1644	genome.wustl.edu	36	7	50564418	50564418	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	50564418	50564418	C	T	SNP	DDC	NM_000790	human	genbank	54_36p	-1	reviewed	silent	c.552	p.V184	1	"superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC"	"superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC"	-	no_errors
DDC	1644	genome.wustl.edu	36	7	50579101	50579101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	50579101	50579101	G	T	SNP	DDC	NM_000790	human	genbank	54_36p	-1	reviewed	missense	c.177	p.D59E	0.04	"HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases"	"HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC,superfamily_PLP-dependent transferases"	-	no_errors
RBAK	57786	genome.wustl.edu	36	7	5070312	5070312	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	5070312	5070312	T	C	SNP	RBAK	NM_021163	human	genbank	54_36p	1	reviewed	silent	c.699	p.Y233	0.21	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
VSTM2A	222008	genome.wustl.edu	36	7	54585204	54585204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	54585204	54585204	G	A	SNP	VSTM2A	NM_182546	human	genbank	54_36p	1	validated	missense	c.481	p.E161K	1	NULL	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
ZNF713	349075	genome.wustl.edu	36	7	55958886	55958886	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	55958886	55958886	G	C	SNP	ZNF713	NM_182633	human	genbank	54_36p	1	provisional	missense	c.268	p.D90H	0.84	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SUMF2	25870	genome.wustl.edu	36	7	56114783	56114783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	56114783	56114783	C	T	SNP	SUMF2	NM_015411	human	genbank	54_36p	1	reviewed	missense	c.890	p.P297L	0	NULL	"HMMPfam_DUF323,superfamily_C-type lectin-like"	-	no_errors
LOC441228	441228	genome.wustl.edu	36	7	56323390	56323390	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	56323390	56323390	C	A	SNP	LOC441228	XR_016387	human	genbank	54_36p	1	model	rna	NULL	NULL	0.09	-	-	-	no_errors
LOC441228	441228	genome.wustl.edu	36	7	56325666	56325679	+	RNA	DEL	TCTCTAGCAGACTG	TCTCTAGCAGACTG	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	TCTCTAGCAGACTG	TCTCTAGCAGACTG	TCTCTAGCAGACTG	-	TCTCTAGCAGACTG	TCTCTAGCAGACTG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	56325666	56325679	TCTCTAGCAGACTG	-	DEL	LOC441228	XR_016387	human	genbank	54_36p	1	model	rna	NULL	NULL	1.000:1.000:0.999:1.000:1.000:0.993:1.000:0.999:0.996:1.000:1.000:1.000:1.000:1.000	-	-	"(deletion:rna[56325106,56327174])"	no_errors
LOC728500	728500	genome.wustl.edu	36	7	57009139	57009139	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	57009139	57009139	G	A	SNP	LOC728500	XM_001127570	human	genbank	54_36p	-1	model	missense	c.547	p.H183Y	0	NULL	NULL	-	no_errors
ZNF479	90827	genome.wustl.edu	36	7	57191653	57191653	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	57191653	57191653	C	T	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	missense	c.1411	p.G471S	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF479	90827	genome.wustl.edu	36	7	57192019	57192019	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	57192019	57192019	T	C	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	missense	c.1045	p.R349G	0.97	superfamily_SSF57667	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF479	90827	genome.wustl.edu	36	7	57192030	57192030	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	57192030	57192030	C	G	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	missense	c.1034	p.R345T	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
RNF216	54476	genome.wustl.edu	36	7	5747471	5747471	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	5747471	5747471	A	C	SNP	RNF216	NM_207111	human	genbank	54_36p	-1	reviewed	missense	c.703	p.F235V	0.95	NULL	"HMMSmart_IBR,superfamily_SSF57850"	-	no_errors
ZNF716	441234	genome.wustl.edu	36	7	57532718	57532718	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	57532718	57532718	T	G	SNP	ZNF716	XM_001714654	human	genbank	54_36p	1	model	missense	c.609	p.H203Q	0.02	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF716	441234	genome.wustl.edu	36	7	57533681	57533681	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	57533681	57533681	C	A	SNP	ZNF716	ENST00000331425	human	ensembl	54_36p	1	known	silent	c.1458	p.G486	0.4	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_stop_codon
LOC643955	643955	genome.wustl.edu	36	7	62389761	62389761	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	62389761	62389761	G	C	SNP	LOC643955	NR_003952	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.8	-	-	-	pseudogene
LOC442319	442319	genome.wustl.edu	36	7	63176462	63176462	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	63176462	63176462	A	T	SNP	LOC442319	XR_016680	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	no_errors
LOC728927	728927	genome.wustl.edu	36	7	63446220	63446221	+	Frame_Shift_Del	DEL	TG	TG	-	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	TG	TG	TG	-	TG	TG	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	63446220	63446221	TG	-	DEL	LOC728927	XM_001128828	human	genbank	54_36p	1	model	frame_shift_del	c.544_545	p.C182fs	0.863:0.649	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[63445903,63446960])"	no_errors
LOC644387	644387	genome.wustl.edu	36	7	63834059	63834059	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	63834059	63834059	C	T	SNP	LOC644387	XR_016224	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.13	-	-	-	pseudogene
KDELR2	11014	genome.wustl.edu	36	7	6475805	6475805	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	6475805	6475805	C	T	SNP	KDELR2	NM_006854	human	genbank	54_36p	-1	reviewed	missense	c.298	p.V100I	1	HMMPfam_ER_lumen_recept	"HMMPfam_ER_lumen_recept,PatternScan_ER_LUMEN_RECEPTOR_1,PatternScan_ER_LUMEN_RECEPTOR_2"	-	no_errors
LOC493754	493754	genome.wustl.edu	36	7	65679380	65679380	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	65679380	65679380	G	A	SNP	LOC493754	NR_002933	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.01	-	-	-	pseudogene
KCTD7	154881	genome.wustl.edu	36	7	65741314	65741314	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	65741314	65741314	G	A	SNP	KCTD7	NM_153033	human	genbank	54_36p	1	validated	missense	c.530	p.R177H	1	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	-	no_errors
C7orf42	55069	genome.wustl.edu	36	7	66047621	66047621	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	66047621	66047621	G	T	SNP	C7orf42	NM_017994	human	genbank	54_36p	1	validated	missense	c.383	p.G128V	1	NULL	NULL	-	no_errors
C7orf26	79034	genome.wustl.edu	36	7	6606257	6606257	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	6606257	6606257	C	G	SNP	C7orf26	NM_024067	human	genbank	54_36p	1	predicted	missense	c.853	p.L285V	0.02	NULL	NULL	-	no_errors
ZNF12	7559	genome.wustl.edu	36	7	6703494	6703494	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	6703494	6703494	C	A	SNP	ZNF12	NM_016265	human	genbank	54_36p	-1	reviewed	splice_site	c.238+1	e3+1	0.99	-	-	-	no_errors
PMS2CL	5395	genome.wustl.edu	36	7	6743617	6743617	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	6743617	6743617	C	A	SNP	PMS2CL	ENST00000338780	human	ensembl	54_36p	1	known	missense	c.372	p.D124E	0.03	NULL	NULL	-	no_errors
C7orf28B	221960	genome.wustl.edu	36	7	6830641	6830641	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	6830641	6830641	A	C	SNP	C7orf28B	NM_198097	human	genbank	54_36p	-1	predicted	missense	c.282	p.N94K	1	HMMPfam_DUF2049	HMMPfam_DUF2049	-	no_errors
LOC647415	647415	genome.wustl.edu	36	7	6931827	6931827	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	6931827	6931827	C	A	SNP	LOC647415	XR_037564	human	genbank	54_36p	1	model	rna	NULL	NULL	0	-	-	-	pseudogene
AUTS2	26053	genome.wustl.edu	36	7	69866088	69866088	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	69866088	69866088	G	A	SNP	AUTS2	NM_015570	human	genbank	54_36p	1	validated	missense	c.1039	p.E347K	0.71	NULL	NULL	-	no_errors
AUTS2	26053	genome.wustl.edu	36	7	69867749	69867749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	69867749	69867749	G	A	SNP	AUTS2	NM_015570	human	genbank	54_36p	1	validated	silent	c.1290	p.P430	0.09	NULL	NULL	-	no_errors
WBSCR17	64409	genome.wustl.edu	36	7	70772925	70772925	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	70772925	70772925	A	C	SNP	WBSCR17	NM_022479	human	genbank	54_36p	1	reviewed	missense	c.1299	p.E433D	0.99	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458"	-	no_errors
GTF2IRD2P1	401375	genome.wustl.edu	36	7	72296263	72296263	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	72296263	72296263	G	A	SNP	GTF2IRD2P	NR_002164	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.93	-	-	-	pseudogene
BAZ1B	9031	genome.wustl.edu	36	7	72515339	72515339	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	72515339	72515339	T	C	SNP	BAZ1B	NM_032408	human	genbank	54_36p	-1	reviewed	missense	c.3098	p.H1033R	1	NULL	"HMMPfam_WAC_Acf1_DNA_bd,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
ELN	2006	genome.wustl.edu	36	7	73112446	73112446	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	73112446	73112446	G	A	SNP	ELN	ENST00000380562	human	ensembl	54_36p	1	known	missense	c.1540	p.A514T	0.34	NULL	NULL	-	no_stop_codon
LIMK1	3984	genome.wustl.edu	36	7	73158455	73158455	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	73158455	73158455	C	A	SNP	LIMK1	NM_002314	human	genbank	54_36p	1	reviewed	missense	c.827	p.P276Q	0.27	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
GTF2IRD1	9569	genome.wustl.edu	36	7	73582032	73582032	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	73582032	73582032	G	A	SNP	GTF2IRD1	NM_016328	human	genbank	54_36p	1	reviewed	missense	c.1123	p.V375M	1	HMMPfam_GTF2I	HMMPfam_GTF2I	-	no_errors
GTF2IRD2	84163	genome.wustl.edu	36	7	73849400	73849400	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	73849400	73849400	G	C	SNP	GTF2IRD2	NM_173537	human	genbank	54_36p	-1	validated	missense	c.2387	p.T796S	0.99	NULL	HMMPfam_GTF2I	-	no_errors
GTF2IRD2B	389524	genome.wustl.edu	36	7	74201689	74201689	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	7	74201689	74201689	G	A	SNP	GTF2IRD2B	NM_001003795	human	genbank	54_36p	1	reviewed	silent	c.1500	p.S500	0.02	NULL	HMMPfam_GTF2I	-	no_errors
GTF2IRD2B	389524	genome.wustl.edu	36	7	74202557	74202557	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	74202557	74202557	A	G	SNP	GTF2IRD2B	NM_001003795	human	genbank	54_36p	1	reviewed	missense	c.2368	p.K790E	0.93	NULL	HMMPfam_GTF2I	-	no_errors
DTX2	113878	genome.wustl.edu	36	7	75949844	75949844	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	75949844	75949844	G	T	SNP	DTX2	NM_001102594	human	genbank	54_36p	1	validated	missense	c.352	p.D118Y	1	"HMMPfam_WWE,HMMSmart_SM00678"	"HMMPfam_WWE,HMMSmart_SM00678,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
CCDC146	57639	genome.wustl.edu	36	7	76741878	76741878	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	76741878	76741878	A	C	SNP	CCDC146	NM_020879	human	genbank	54_36p	1	validated	missense	c.1413	p.Q471H	1	NULL	NULL	-	no_errors
PHTF2	57157	genome.wustl.edu	36	7	77389987	77389987	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	77389987	77389987	C	T	SNP	PHTF2	NM_020432	human	genbank	54_36p	1	validated	missense	c.1075	p.R359W	1	NULL	NULL	-	no_errors
MAGI2	9863	genome.wustl.edu	36	7	77723362	77723362	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	77723362	77723362	C	G	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	silent	c.1881	p.R627	1	"superfamily_PDZ domain-like,HMMSmart_SM00228"	###############################################################################################################################################################################################################################################################	-	no_errors
MAGI2	9863	genome.wustl.edu	36	7	77723397	77723397	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	77723397	77723397	C	G	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	missense	c.1846	p.G616R	1	"HMMSmart_SM00228,superfamily_PDZ domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
GNAT3	346562	genome.wustl.edu	36	7	79926023	79926023	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	79926023	79926023	T	A	SNP	GNAT3	NM_001102386	human	genbank	54_36p	-1	provisional	missense	c.965	p.H322L	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	-	no_errors
CD36	948	genome.wustl.edu	36	7	80141354	80141354	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	80141354	80141354	T	C	SNP	CD36	NM_000072	human	genbank	54_36p	1	reviewed	silent	c.1374	p.A458	1	NULL	HMMPfam_CD36	-	no_errors
SEMA3C	10512	genome.wustl.edu	36	7	80270014	80270014	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	80270014	80270014	C	G	SNP	SEMA3C	NM_006379	human	genbank	54_36p	-1	validated	silent	c.819	p.L273	1	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
HGF	3082	genome.wustl.edu	36	7	81174600	81174600	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	81174600	81174600	C	A	SNP	HGF	NM_000601	human	genbank	54_36p	-1	reviewed	nonsense	c.1558	p.G520*	1	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases"	"HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases"	-	no_errors
CACNA2D1	781	genome.wustl.edu	36	7	81437180	81437180	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	81437180	81437180	C	G	SNP	CACNA2D1	NM_000722	human	genbank	54_36p	-1	reviewed	missense	c.2261	p.R754T	1	NULL	"HMMPfam_VWA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Cache_1,HMMPfam_VGCC_alpha2"	-	no_errors
PCLO	27445	genome.wustl.edu	36	7	82384027	82384027	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	82384027	82384027	T	A	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	missense	c.11211	p.Q3737H	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMPfam_zf-piccolo,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
PCLO	27445	genome.wustl.edu	36	7	82602493	82602493	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	82602493	82602493	G	T	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	nonsense	c.2309	p.S770*	0.01	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
PCLO	27445	genome.wustl.edu	36	7	82622189	82622189	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	7	82622189	82622189	C	T	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	silent	c.1704	p.Q568	0.03	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
SEMA3D	223117	genome.wustl.edu	36	7	84482414	84482414	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	84482414	84482414	A	G	SNP	SEMA3D	NM_152754	human	genbank	54_36p	-1	validated	missense	c.1600	p.C534R	1	"superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
SEMA3D	223117	genome.wustl.edu	36	7	84489662	84489662	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	84489662	84489662	A	G	SNP	SEMA3D	NM_152754	human	genbank	54_36p	-1	validated	silent	c.1395	p.D465	1	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema"	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMSmart_IG,HMMSmart_PSI,HMMPfam_V-set,superfamily_Plexin-like_fold,superfamily_SSF48726"	-	no_errors
GRM3	2913	genome.wustl.edu	36	7	86306252	86306252	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	86306252	86306252	T	A	SNP	GRM3	NM_000840	human	genbank	54_36p	1	reviewed	missense	c.1486	p.S496T	0.64	superfamily_Periplasmic binding protein-like I	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GRM3	2913	genome.wustl.edu	36	7	86306689	86306689	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	86306689	86306689	T	C	SNP	GRM3	NM_000840	human	genbank	54_36p	1	reviewed	silent	c.1923	p.C641	0.49	HMMPfam_7tm_3	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I"	-	no_errors
ABCB4	5244	genome.wustl.edu	36	7	86870405	86870405	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	86870405	86870405	C	T	SNP	ABCB4	NM_018849	human	genbank	54_36p	-1	reviewed	silent	c.3636	p.L1212	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCB4	5244	genome.wustl.edu	36	7	86873648	86873648	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	86873648	86873648	A	C	SNP	ABCB4	NM_018849	human	genbank	54_36p	-1	reviewed	missense	c.3399	p.I1133M	1	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCB4	5244	genome.wustl.edu	36	7	86906923	86906923	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	86906923	86906923	T	C	SNP	ABCB4	NM_018849	human	genbank	54_36p	-1	reviewed	missense	c.1727	p.D576G	1	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
C7orf62	219557	genome.wustl.edu	36	7	88261851	88261851	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	88261851	88261851	A	G	SNP	MGC26647	NM_152706	human	genbank	54_36p	-1	predicted	silent	c.342	p.Y114	0	NULL	NULL	-	no_errors
STEAP2	261729	genome.wustl.edu	36	7	89697188	89697188	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	89697188	89697188	T	A	SNP	STEAP2	NM_001040665	human	genbank	54_36p	1	reviewed	missense	c.1087	p.F363I	1	HMMPfam_Ferric_reduct	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored,HMMPfam_Ferric_reduct"	-	no_errors
AKAP9	10142	genome.wustl.edu	36	7	91479846	91479846	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	91479846	91479846	G	C	SNP	AKAP9	NM_005751	human	genbank	54_36p	1	reviewed	missense	c.3486	p.Q1162H	1	NULL	"PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil"	-	no_errors
AKAP9	10142	genome.wustl.edu	36	7	91560442	91560442	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	91560442	91560442	G	T	SNP	AKAP9	NM_005751	human	genbank	54_36p	1	reviewed	nonsense	c.9454	p.E3152*	1	NULL	"PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil"	-	no_errors
KRIT1	889	genome.wustl.edu	36	7	91681222	91681222	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	91681222	91681222	T	C	SNP	KRIT1	NM_004912	human	genbank	54_36p	-1	validated	missense	c.1738	p.N580D	1	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	-	no_errors
SAMD9	54809	genome.wustl.edu	36	7	92570228	92570228	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	92570228	92570228	C	A	SNP	SAMD9	NM_017654	human	genbank	54_36p	-1	validated	missense	c.3119	p.R1040L	0.96	NULL	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
SAMD9	54809	genome.wustl.edu	36	7	92571396	92571396	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	92571396	92571396	C	A	SNP	SAMD9	NM_017654	human	genbank	54_36p	-1	validated	missense	c.1951	p.A651S	0.14	NULL	"HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology"	-	no_errors
SAMD9L	219285	genome.wustl.edu	36	7	92599291	92599291	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	92599291	92599291	C	T	SNP	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	silent	c.3930	p.L1310	0	NULL	superfamily_SAM/Pointed domain	-	no_errors
HEPACAM2	253012	genome.wustl.edu	36	7	92682651	92682651	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	92682651	92682651	A	T	SNP	HEPACAM2	NM_001039372	human	genbank	54_36p	-1	provisional	nonsense	c.714	p.Y238*	0.97	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408"	-	no_errors
CCDC132	55610	genome.wustl.edu	36	7	92823274	92823274	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	92823274	92823274	T	G	SNP	CCDC132	NM_017667	human	genbank	54_36p	1	validated	missense	c.2721	p.I907M	1	HMMPfam_DUF2451	"HMMPfam_DUF2450,HMMPfam_DUF2451"	-	no_errors
CALCR	799	genome.wustl.edu	36	7	92893814	92893814	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	92893814	92893814	T	A	SNP	CALCR	NM_001742	human	genbank	54_36p	-1	validated	missense	c.1215	p.Q405H	0.95	superfamily_SSF81321	"superfamily_SSF111418,superfamily_SSF81321,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
COL1A2	1278	genome.wustl.edu	36	7	93892885	93892885	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	93892885	93892885	G	A	SNP	COL1A2	NM_000089	human	genbank	54_36p	1	reviewed	missense	c.2809	p.G937S	1	HMMPfam_Collagen	"HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
CASD1	64921	genome.wustl.edu	36	7	94005092	94005092	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	94005092	94005092	A	G	SNP	CASD1	NM_022900	human	genbank	54_36p	1	validated	missense	c.1216	p.I406V	1	HMMPfam_Cas1p	"superfamily_Cyclin_like,HMMPfam_Cas1p"	-	no_errors
CASD1	64921	genome.wustl.edu	36	7	94006277	94006277	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	94006277	94006277	G	C	SNP	CASD1	NM_022900	human	genbank	54_36p	1	validated	missense	c.1329	p.L443F	1	HMMPfam_Cas1p	"superfamily_Cyclin_like,HMMPfam_Cas1p"	-	no_errors
DYNC1I1	1780	genome.wustl.edu	36	7	95280548	95280548	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	95280548	95280548	G	T	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	1	validated	nonsense	c.328	p.G110*	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
DYNC1I1	1780	genome.wustl.edu	36	7	95280563	95280563	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	95280563	95280563	G	A	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	1	validated	missense	c.343	p.G115S	0.99	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
DYNC1I1	1780	genome.wustl.edu	36	7	95543440	95543440	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	95543440	95543440	A	C	SNP	DYNC1I1	NM_004411	human	genbank	54_36p	1	validated	missense	c.1696	p.T566P	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
ASNS	440	genome.wustl.edu	36	7	97320320	97320320	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	97320320	97320320	G	C	SNP	ASNS	NM_001673	human	genbank	54_36p	-1	reviewed	nonsense	c.1464	p.Y488*	0.86	superfamily_SSF52402	"superfamily_SSF56235,HMMPfam_GATase_2,superfamily_SSF52402,HMMPfam_Asn_synthase"	-	no_errors
ASNS	440	genome.wustl.edu	36	7	97336247	97336247	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	97336247	97336247	A	G	SNP	ASNS	NM_001673	human	genbank	54_36p	-1	reviewed	missense	c.158	p.V53A	1	superfamily_SSF56235	"HMMPfam_GATase_2,HMMPfam_Asn_synthase,superfamily_SSF52402,superfamily_SSF56235"	-	no_errors
LMTK2	22853	genome.wustl.edu	36	7	97671325	97671325	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	97671325	97671325	G	A	SNP	LMTK2	NM_014916	human	genbank	54_36p	1	validated	silent	c.4374	p.T1458	0.01	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98391707	98391707	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	98391707	98391707	G	A	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	silent	c.5865	p.V1955	1	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_COPPER_BLUE,superfamily_Protein prenylyltransferase,HMMPfam_FAT,superfamily_TPR-like,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC"	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98419049	98419049	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	98419049	98419049	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	54_36p	1	known	missense	c.9032	p.S3011L	1	"HMMPfam_FAT,superfamily_ARM repeat"	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat"	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98430214	98430214	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	98430214	98430214	G	T	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	silent	c.9987	p.V3329	1	superfamily_ARM repeat	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like"	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98439826	98439826	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	98439826	98439826	G	C	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	missense	c.10258	p.E3420Q	1	"superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat"	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like"	-	no_errors
ARPC1A	10552	genome.wustl.edu	36	7	98779896	98779896	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	98779896	98779896	G	A	SNP	ARPC1A	NM_006409	human	genbank	54_36p	1	reviewed	missense	c.214	p.A72T	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
PTCD1	26024	genome.wustl.edu	36	7	98870415	98870415	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	98870415	98870415	C	A	SNP	PTCD1	NM_015545	human	genbank	54_36p	-1	validated	missense	c.387	p.W129C	0.84	NULL	HMMPfam_PPR	-	no_errors
ZNF498	221785	genome.wustl.edu	36	7	99056982	99056982	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99056982	99056982	C	T	SNP	ZNF498	NM_145115	human	genbank	54_36p	1	validated	silent	c.438	p.G146	0.01	HMMSmart_SM00431	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF498	221785	genome.wustl.edu	36	7	99065292	99065292	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99065292	99065292	C	G	SNP	ZNF498	NM_145115	human	genbank	54_36p	1	validated	missense	c.1348	p.R450G	0.22	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CYP3A7	1551	genome.wustl.edu	36	7	99152771	99152771	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99152771	99152771	C	T	SNP	CYP3A7	NM_000765	human	genbank	54_36p	-1	reviewed	silent	c.486	p.R162	0	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP3A4	1576	genome.wustl.edu	36	7	99199567	99199567	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99199567	99199567	G	A	SNP	CYP3A4	NM_017460	human	genbank	54_36p	-1	reviewed	silent	c.873	p.S291	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP3A43	64816	genome.wustl.edu	36	7	99295550	99295550	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99295550	99295550	G	T	SNP	CYP3A43	NM_022820	human	genbank	54_36p	1	reviewed	splice_site	c.1026+1	e10+1	1	-	-	-	no_errors
TRIM4	89122	genome.wustl.edu	36	7	99327849	99327849	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99327849	99327849	A	G	SNP	TRIM4	NM_033017	human	genbank	54_36p	-1	reviewed	missense	c.1376	p.F459S	1	"HMMPfam_SPRY,HMMSmart_SM00449"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
ZKSCAN1	7586	genome.wustl.edu	36	7	99459864	99459864	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99459864	99459864	G	A	SNP	ZKSCAN1	NM_003439	human	genbank	54_36p	1	validated	missense	c.578	p.R193Q	0.55	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZKSCAN1	7586	genome.wustl.edu	36	7	99465904	99465904	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99465904	99465904	C	G	SNP	ZKSCAN1	NM_003439	human	genbank	54_36p	1	validated	missense	c.769	p.Q257E	1	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZSCAN21	7589	genome.wustl.edu	36	7	99499348	99499348	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99499348	99499348	T	A	SNP	ZSCAN21	NM_145914	human	genbank	54_36p	1	validated	missense	c.594	p.D198E	0.28	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZSCAN21	7589	genome.wustl.edu	36	7	99499717	99499717	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99499717	99499717	C	G	SNP	ZSCAN21	NM_145914	human	genbank	54_36p	1	validated	silent	c.963	p.T321	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
TAF6	6878	genome.wustl.edu	36	7	99547786	99547786	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99547786	99547786	G	T	SNP	TAF6	NM_005641	human	genbank	54_36p	-1	reviewed	missense	c.601	p.L201M	0.84	NULL	"superfamily_Histone-fold,HMMPfam_TAF,HMMSmart_SM00803,HMMPfam_DUF1546"	-	no_errors
GAL3ST4	79690	genome.wustl.edu	36	7	99595714	99595714	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99595714	99595714	C	A	SNP	GAL3ST4	NM_024637	human	genbank	54_36p	-1	reviewed	nonsense	c.1234	p.E412*	0.12	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
GAL3ST4	79690	genome.wustl.edu	36	7	99595895	99595895	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99595895	99595895	C	A	SNP	GAL3ST4	NM_024637	human	genbank	54_36p	-1	reviewed	missense	c.1053	p.E351D	0.21	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
STAG3	10734	genome.wustl.edu	36	7	99634112	99634112	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99634112	99634112	C	A	SNP	STAG3	NM_012447	human	genbank	54_36p	1	validated	silent	c.1323	p.A441	0.02	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_STAG"	-	no_errors
STAG3	10734	genome.wustl.edu	36	7	99636423	99636423	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99636423	99636423	C	T	SNP	STAG3	NM_012447	human	genbank	54_36p	1	validated	silent	c.1956	p.L652	1	superfamily_ARM repeat	"HMMPfam_STAG,superfamily_ARM repeat"	-	no_errors
C7orf47	221908	genome.wustl.edu	36	7	99870998	99870998	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	99870998	99870998	G	C	SNP	C7orf47	NM_145030	human	genbank	54_36p	-1	predicted	missense	c.683	p.P228R	0	NULL	NULL	-	no_errors
LOC100131257	100131257	genome.wustl.edu	36	7	7085167	7085167	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	7085167	7085167	C	A	SNP	LOC100131257	XM_001716696	human	genbank	54_36p	-1	model	nonsense	c.562	p.E188*	0.09	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LOC100129960	100129960	genome.wustl.edu	36	8	71017903	71017903	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	71017903	71017903	A	T	SNP	LOC100129960	XR_037318	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000188463	0	genome.wustl.edu	36	7	71923895	71923895	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	71923895	71923895	C	A	SNP	ENSG00000188463	ENST00000389196	human	ensembl	54_36p	-1	known	missense	c.237	p.E79D	1	"HMMPfam_Flavodoxin_1,superfamily_SSF52218"	"HMMPfam_Flavodoxin_1,superfamily_SSF52218"	-	no_errors
SPDYE7P	441251	genome.wustl.edu	36	7	71977242	71977242	+	RNA	SNP	T	T	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	71977242	71977242	T	G	SNP	SPDYE7P	NR_003666	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.05	-	-	-	pseudogene
DNM1P33	554175	genome.wustl.edu	36	15	72143103	72143103	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	72143103	72143103	G	A	SNP	DNM1P33	ENST00000339692	human	ensembl	54_36p	1	known	silent	c.228	p.S76	0.99	HMMPfam_GED	HMMPfam_GED	-	no_errors
LOC100132353	100132353	genome.wustl.edu	36	1	72513279	72513279	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	72513279	72513279	G	T	SNP	LOC100132353	XM_001719317	human	genbank	54_36p	1	model	nonsense	c.334	p.E112*	1	"HMMPfam_GDI,superfamily_FAD-linked reductases C-terminal domain"	"HMMPfam_GDI,superfamily_FAD-linked reductases C-terminal domain,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
ENSG00000214331	0	genome.wustl.edu	36	16	72943457	72943457	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	72943457	72943457	T	C	SNP	ENSG00000214331	ENST00000398122	human	ensembl	54_36p	-1	known	missense	c.586	p.S196G	1	"superfamily_SSF51905,HMMPfam_DAO"	"superfamily_SSF51905,HMMPfam_DAO"	-	no_stop_codon
LOC100133180	100133180	genome.wustl.edu	36	X	73267986	73267986	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	73267986	73267986	C	T	SNP	LOC100133180	XR_037576	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
DNM1P34	729809	genome.wustl.edu	36	15	73381109	73381109	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	73381109	73381109	C	T	SNP	DNM1P34	ENST00000404411	human	ensembl	54_36p	-1	known	silent	c.228	p.S76	0.99	HMMPfam_GED	HMMPfam_GED	-	no_errors
LOC100131044	100131044	genome.wustl.edu	36	10	74348227	74348227	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	74348227	74348227	C	G	SNP	LOC100131044	XR_038799	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.51	-	-	-	pseudogene
LOC646127	646127	genome.wustl.edu	36	X	74464243	74464243	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	74464243	74464243	C	T	SNP	LOC646127	XR_037591	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.03	-	-	-	pseudogene
LOC100128989	100128989	genome.wustl.edu	36	X	74675133	74675133	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	74675133	74675133	G	T	SNP	LOC100128989	XM_001716779	human	genbank	54_36p	-1	model	missense	c.80	p.T27N	1	NULL	NULL	-	no_start_codon
ENSG00000119660	0	genome.wustl.edu	36	14	74828581	74828581	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	14	74828581	74828581	G	A	SNP	ENSG00000119660	ENST00000238638	human	ensembl	54_36p	-1	known	missense	c.383	p.T128I	0.01	NULL	NULL	-	no_errors
ENSG00000179799	0	genome.wustl.edu	36	3	75489141	75489141	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	75489141	75489141	C	G	SNP	ENSG00000179799	ENST00000331736	human	ensembl	54_36p	-1	known	missense	c.139	p.D47H	0.19	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
LOC100131940	100131940	genome.wustl.edu	36	4	77485101	77485101	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	77485101	77485101	G	C	SNP	LOC100131940	XR_037574	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC642546	642546	genome.wustl.edu	36	X	79715889	79715889	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	79715889	79715889	G	A	SNP	LOC642546	XR_038841	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ENSG00000215028	0	genome.wustl.edu	36	8	79836611	79836611	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	79836611	79836611	C	G	SNP	ENSG00000215028	ENST00000399463	human	ensembl	54_36p	-1	novel	splice_site	c.NULL	NULL	1	-	-	-	no_coding_region:pseudogene
VPS13B	157680	genome.wustl.edu	36	8	100197249	100197249	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	100197249	100197249	A	G	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	missense	c.908	p.H303R	0.05	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
VPS13B	157680	genome.wustl.edu	36	8	100356530	100356530	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	100356530	100356530	C	A	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	missense	c.2696	p.S899Y	1	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
VPS13B	157680	genome.wustl.edu	36	8	100548939	100548939	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	100548939	100548939	T	A	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	silent	c.3567	p.S1189	1	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
RGS22	26166	genome.wustl.edu	36	8	101186797	101186797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	101186797	101186797	G	A	SNP	RGS22	NM_015668	human	genbank	54_36p	-1	validated	missense	c.35	p.T12I	0.34	NULL	"superfamily_Regulator of G-protein signaling RGS,HMMSmart_SM00315,HMMPfam_RGS"	-	no_errors
SPAG1	6674	genome.wustl.edu	36	8	101306630	101306630	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	101306630	101306630	C	A	SNP	SPAG1	NM_003114	human	genbank	54_36p	1	reviewed	nonsense	c.1742	p.S581*	0.9	superfamily_Protein prenylyltransferase	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_Protein prenylyltransferase"	-	no_errors
RNF19A	25897	genome.wustl.edu	36	8	101369047	101369047	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	101369047	101369047	C	T	SNP	RNF19A	NM_015435	human	genbank	54_36p	-1	reviewed	missense	c.532	p.E178K	1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_IBR,HMMSmart_SM00647"	-	no_errors
ZNF706	51123	genome.wustl.edu	36	8	102283023	102283023	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	102283023	102283023	G	T	SNP	ZNF706	NM_001042510	human	genbank	54_36p	-1	validated	nonsense	c.123	p.C41*	1	"HMMPfam_DUF1909,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_DUF1909,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NACAP1	83955	genome.wustl.edu	36	8	102450494	102450494	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	102450494	102450494	G	A	SNP	NACAP1	NR_002182	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
NACAP1	83955	genome.wustl.edu	36	8	102450697	102450697	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	102450697	102450697	G	C	SNP	NACAP1	NR_002182	human	genbank	54_36p	1	provisional	rna	NULL	NULL	1	-	-	-	pseudogene
GRHL2	79977	genome.wustl.edu	36	8	102640019	102640020	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	-	-	-	T	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	8	102640019	102640020	-	T	INS	GRHL2	NM_024915	human	genbank	54_36p	1	validated	frame_shift_ins	c.481_482	p.E161fs	0.998:1.000	NULL	HMMPfam_CP2	-	no_errors
GRHL2	79977	genome.wustl.edu	36	8	102701076	102701076	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	102701076	102701076	G	T	SNP	GRHL2	NM_024915	human	genbank	54_36p	1	validated	missense	c.1232	p.C411F	1	HMMPfam_CP2	HMMPfam_CP2	-	no_errors
RRM2B	50484	genome.wustl.edu	36	8	103305502	103305502	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	103305502	103305502	C	G	SNP	RRM2B	NM_015713	human	genbank	54_36p	-1	validated	missense	c.498	p.K166N	1	"superfamily_Ferritin-like,HMMPfam_Ribonuc_red_sm"	"superfamily_Ferritin-like,HMMPfam_Ribonuc_red_sm,PatternScan_RIBORED_SMALL"	-	no_errors
ODF1	4956	genome.wustl.edu	36	8	103633145	103633145	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	103633145	103633145	G	C	SNP	ODF1	NM_024410	human	genbank	54_36p	1	reviewed	missense	c.14	p.S5T	1	NULL	superfamily_HSP20_chap	-	no_errors
PRSS55	203074	genome.wustl.edu	36	8	10424530	10424530	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	10424530	10424530	G	T	SNP	UNQ9391	NM_198464	human	genbank	54_36p	1	validated	missense	c.258	p.Q86H	0.98	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
SLC25A32	81034	genome.wustl.edu	36	8	104489040	104489040	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	104489040	104489040	G	T	SNP	SLC25A32	NM_030780	human	genbank	54_36p	-1	validated	missense	c.303	p.F101L	1	"HMMPfam_Mito_carr,superfamily_Mitoch_carrier"	"HMMPfam_Mito_carr,superfamily_Mitoch_carrier"	-	no_errors
RIMS2	9699	genome.wustl.edu	36	8	104778634	104778634	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	104778634	104778634	C	T	SNP	RIMS2	NM_001100117	human	genbank	54_36p	1	validated	silent	c.321	p.N107	1	"HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger"	"HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10501913	10501913	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	8	10501913	10501913	C	A	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.7105	p.G2369C	0	NULL	"superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen"	-	no_errors
RIMS2	9699	genome.wustl.edu	36	8	105024226	105024226	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	105024226	105024226	A	C	SNP	RIMS2	NM_001100117	human	genbank	54_36p	1	validated	missense	c.2597	p.Y866S	1	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10504290	10504290	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	10504290	10504290	G	T	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	silent	c.4728	p.L1576	0.03	NULL	"HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837"	-	no_errors
RIMS2	9699	genome.wustl.edu	36	8	105079642	105079642	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	105079642	105079642	A	T	SNP	RIMS2	NM_014677	human	genbank	54_36p	1	validated	missense	c.2474	p.H825L	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
RIMS2	9699	genome.wustl.edu	36	8	105094889	105094889	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	105094889	105094889	T	G	SNP	RIMS2	NM_001100117	human	genbank	54_36p	1	validated	missense	c.3088	p.S1030A	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
RP1L1	94137	genome.wustl.edu	36	8	10518051	10518051	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	10518051	10518051	G	T	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.71	p.T24N	0	superfamily_SSF89837	"HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837"	-	no_errors
DPYS	1807	genome.wustl.edu	36	8	105528874	105528874	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	105528874	105528874	T	C	SNP	DPYS	NM_001385	human	genbank	54_36p	-1	reviewed	missense	c.457	p.K153E	0.99	"HMMPfam_Amidohydro_1,superfamily_SSF51556"	"superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556"	-	no_errors
ZFPM2	23414	genome.wustl.edu	36	8	106525714	106525714	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	106525714	106525714	A	G	SNP	ZFPM2	NM_012082	human	genbank	54_36p	1	reviewed	missense	c.230	p.E77G	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFPM2	23414	genome.wustl.edu	36	8	106883918	106883925	+	Frame_Shift_Del	DEL	TTTCCAAA	TTTCCAAA	-	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	TTTCCAAA	TTTCCAAA	TTTCCAAA	-	TTTCCAAA	TTTCCAAA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	106883918	106883925	TTTCCAAA	-	DEL	ZFPM2	NM_012082	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2432_2439	p.S812fs	0.779:0.770:0.870:0.976:0.980:1.000:1.000:0.999	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"(deletion:cds_exon[106882451,106884942])"	no_errors
ABRA	137735	genome.wustl.edu	36	8	107842709	107842709	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	107842709	107842709	G	T	SNP	ABRA	NM_139166	human	genbank	54_36p	-1	validated	missense	c.878	p.T293N	1	NULL	NULL	-	no_errors
ABRA	137735	genome.wustl.edu	36	8	107851408	107851408	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	107851408	107851408	G	T	SNP	ABRA	NM_139166	human	genbank	54_36p	-1	validated	missense	c.187	p.P63T	0	NULL	NULL	-	no_errors
ANGPT1	284	genome.wustl.edu	36	8	108384722	108384723	+	Frame_Shift_Ins	INS	-	-	TT	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	-	-	-	TT	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	8	108384722	108384723	-	TT	INS	ANGPT1	NM_001146	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.858_857	p.C286fs	1.000:1.000	"HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fibrinogen_C"	"HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
ANGPT1	284	genome.wustl.edu	36	8	108403533	108403533	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	108403533	108403533	C	T	SNP	ANGPT1	NM_001146	human	genbank	54_36p	-1	reviewed	splice_site	c.576-1	e4-1	1	-	-	-	no_errors
ANGPT1	284	genome.wustl.edu	36	8	108417653	108417653	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	108417653	108417653	A	G	SNP	ANGPT1	NM_001146	human	genbank	54_36p	-1	reviewed	missense	c.476	p.L159P	1	NULL	"HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like"	-	no_errors
RSPO2	340419	genome.wustl.edu	36	8	109039658	109039658	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	109039658	109039658	C	T	SNP	RSPO2	NM_178565	human	genbank	54_36p	-1	validated	missense	c.442	p.G148S	1	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209"	"superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209"	-	no_errors
RSPO2	340419	genome.wustl.edu	36	8	109070506	109070506	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	109070506	109070506	T	A	SNP	RSPO2	NM_178565	human	genbank	54_36p	-1	validated	silent	c.237	p.P79	0.99	"HMMSmart_SM00261,superfamily_Growth factor receptor domain"	"HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00261,superfamily_Growth factor receptor domain"	-	no_errors
EIF3E	3646	genome.wustl.edu	36	8	109310490	109310490	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	109310490	109310490	C	G	SNP	EIF3E	NM_001568	human	genbank	54_36p	-1	validated	missense	c.582	p.E194D	1	NULL	"HMMPfam_eIF3_N,HMMPfam_PCI,HMMSmart_SM00088,superfamily_Winged helix DNA-binding domain"	-	no_errors
TMEM74	157753	genome.wustl.edu	36	8	109865647	109865647	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	109865647	109865647	G	T	SNP	TMEM74	NM_153015	human	genbank	54_36p	-1	provisional	missense	c.857	p.T286K	0.01	NULL	NULL	-	no_errors
PKHD1L1	93035	genome.wustl.edu	36	8	110522219	110522219	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	110522219	110522219	G	C	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	missense	c.4061	p.G1354A	1	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG"	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like"	-	no_errors
PKHD1L1	93035	genome.wustl.edu	36	8	110526919	110526919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	110526919	110526919	G	A	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	missense	c.5645	p.C1882Y	0.91	"HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains"	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	-	no_errors
PKHD1L1	93035	genome.wustl.edu	36	8	110599579	110599579	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	-	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	8	110599579	110599579	C	-	DEL	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	frame_shift_del	c.11697	p.L3900fs	0.53	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	"(deletion:cds_exon[110599572,110599913])"	no_errors
SYBU	55638	genome.wustl.edu	36	8	110656324	110656324	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	110656324	110656324	C	T	SNP	GOLSYN	NM_001099744	human	genbank	54_36p	-1	validated	missense	c.1979	p.R660H	0.75	NULL	NULL	-	no_errors
TRPS1	7227	genome.wustl.edu	36	8	116495950	116495950	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	116495950	116495950	G	C	SNP	TRPS1	NM_014112	human	genbank	54_36p	-1	reviewed	missense	c.3362	p.A1121G	1	NULL	"HMMSmart_ZnF_C2H2,superfamily_SSF57716,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
SLC30A8	169026	genome.wustl.edu	36	8	118253979	118253979	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	118253979	118253979	G	C	SNP	SLC30A8	NM_173851	human	genbank	54_36p	1	validated	missense	c.988	p.V330L	0.07	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
EXT1	2131	genome.wustl.edu	36	8	118894310	118894310	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	118894310	118894310	C	T	SNP	EXT1	NM_000127	human	genbank	54_36p	-1	reviewed	silent	c.1704	p.T568	0.38	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64"	"HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64"	-	no_errors
MAL2	114569	genome.wustl.edu	36	8	120321660	120321660	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	120321660	120321660	G	C	SNP	MAL2	NM_052886	human	genbank	54_36p	1	reviewed	missense	c.379	p.A127P	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NOV	4856	genome.wustl.edu	36	8	120499691	120499691	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	120499691	120499691	C	G	SNP	NOV	NM_002514	human	genbank	54_36p	1	reviewed	missense	c.523	p.P175A	0.26	NULL	"HMMSmart_IB,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_Cys_knot,HMMSmart_CT,PatternScan_CTCK_1"	-	no_errors
NOV	4856	genome.wustl.edu	36	8	120504343	120504343	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	120504343	120504343	G	C	SNP	NOV	NM_002514	human	genbank	54_36p	1	reviewed	missense	c.864	p.K288N	1	"HMMSmart_CT,HMMPfam_Cys_knot"	"HMMPfam_IGFBP,HMMSmart_IB,HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMSmart_CT,PatternScan_CTCK_1,HMMPfam_Cys_knot,PatternScan_IGFBP_N_1"	-	no_errors
ENPP2	5168	genome.wustl.edu	36	8	120644337	120644337	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	120644337	120644337	G	T	SNP	ENPP2	NM_006209	human	genbank	54_36p	-1	reviewed	missense	c.2518	p.P840T	0.93	"superfamily_His-Me finger endonucleases,HMMSmart_SM00477,HMMPfam_Endonuclease_NS"	"HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477,HMMPfam_Endonuclease_NS"	-	no_errors
COL14A1	7373	genome.wustl.edu	36	8	121306511	121306511	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	121306511	121306511	G	T	SNP	COL14A1	NM_021110	human	genbank	54_36p	1	validated	nonsense	c.1741	p.E581*	1	"HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
HAS2	3037	genome.wustl.edu	36	8	122695718	122695718	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	122695718	122695718	C	A	SNP	HAS2	NM_005328	human	genbank	54_36p	-1	reviewed	missense	c.1471	p.G491C	1	NULL	"superfamily_SSF53448,HMMPfam_Glycos_transf_2"	-	no_errors
HAS2	3037	genome.wustl.edu	36	8	122710164	122710164	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	122710164	122710164	C	T	SNP	HAS2	NM_005328	human	genbank	54_36p	-1	reviewed	missense	c.598	p.A200T	1	superfamily_SSF53448	"HMMPfam_Glycos_transf_2,superfamily_SSF53448"	-	no_errors
HAS2	3037	genome.wustl.edu	36	8	122710319	122710319	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	122710319	122710319	C	T	SNP	HAS2	NM_005328	human	genbank	54_36p	-1	reviewed	nonsense	c.443	p.W148*	1	superfamily_SSF53448	"HMMPfam_Glycos_transf_2,superfamily_SSF53448"	-	no_errors
HAS2	3037	genome.wustl.edu	36	8	122710346	122710346	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	122710346	122710346	C	A	SNP	HAS2	NM_005328	human	genbank	54_36p	-1	reviewed	missense	c.416	p.G139V	1	superfamily_SSF53448	"HMMPfam_Glycos_transf_2,superfamily_SSF53448"	-	no_errors
LOC649352	649352	genome.wustl.edu	36	8	12281548	12281548	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	12281548	12281548	C	G	SNP	LOC649352	XR_042361	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
FAM83A	84985	genome.wustl.edu	36	8	124264735	124264735	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	124264735	124264735	G	A	SNP	FAM83A	NM_032899	human	genbank	54_36p	1	validated	missense	c.458	p.R153H	1	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
FAM83A	84985	genome.wustl.edu	36	8	124288594	124288594	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	124288594	124288594	G	A	SNP	FAM83A	NM_032899	human	genbank	54_36p	1	validated	missense	c.790	p.G264R	1	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
C8orf76	84933	genome.wustl.edu	36	8	124312749	124312759	+	Frame_Shift_Del	DEL	TCAGCTGAGTC	TCAGCTGAGTC	-	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	TCAGCTGAGTC	TCAGCTGAGTC	TCAGCTGAGTC	-	TCAGCTGAGTC	TCAGCTGAGTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	124312749	124312759	TCAGCTGAGTC	-	DEL	C8orf76	NM_032847	human	genbank	54_36p	-1	predicted	frame_shift_del	c.787_777	p.T260fs	0.384:0.187:0.114:0.023:0.015:0.003:0.006:0.003:0.003:0.002:0.002	NULL	superfamily_SSF48452	"(deletion:cds_exon[124312721,124313178])"	no_errors
ZHX1	11244	genome.wustl.edu	36	8	124336392	124336392	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	124336392	124336392	C	A	SNP	ZHX1	NM_001017926	human	genbank	54_36p	-1	reviewed	nonsense	c.976	p.E326*	1	"HMMSmart_HOX,superfamily_Homeodomain_like"	"PatternScan_ZINC_FINGER_C2H2_1,PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMSmart_HOX,superfamily_Homeodomain_like,HMMPfam_Homeobox"	-	no_errors
FAM91A1	157769	genome.wustl.edu	36	8	124881019	124881019	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	124881019	124881019	C	G	SNP	FAM91A1	NM_144963	human	genbank	54_36p	1	validated	missense	c.1639	p.P547A	1	NULL	PatternScan_PLANT_GLOBIN	-	no_errors
FER1L6	654463	genome.wustl.edu	36	8	125058959	125058959	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	125058959	125058959	T	G	SNP	FER1L6	NM_001039112	human	genbank	54_36p	1	validated	missense	c.992	p.M331R	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB"	-	no_errors
FER1L6	654463	genome.wustl.edu	36	8	125178770	125178770	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	125178770	125178770	G	A	SNP	FER1L6	NM_001039112	human	genbank	54_36p	1	validated	silent	c.4773	p.R1591	0.9	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
GSDMC	56169	genome.wustl.edu	36	8	130829959	130829959	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	130829959	130829959	G	C	SNP	GSDMC	NM_031415	human	genbank	54_36p	-1	validated	silent	c.1497	p.L499	0	NULL	HMMPfam_Gasdermin	-	no_errors
ASAP1	50807	genome.wustl.edu	36	8	131142205	131142205	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	131142205	131142205	C	G	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	silent	c.2994	p.L998	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
ASAP1	50807	genome.wustl.edu	36	8	131193526	131193526	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	131193526	131193526	C	G	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	silent	c.2397	p.G799	1	NULL	"HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SSF50729"	-	no_errors
ASAP1	50807	genome.wustl.edu	36	8	131250458	131250458	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	131250458	131250458	T	A	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	nonsense	c.784	p.K262*	1	NULL	"HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SSF50729"	-	no_errors
DLC1	10395	genome.wustl.edu	36	8	13295574	13295574	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	13295574	13295574	C	T	SNP	DLC1	NM_182643	human	genbank	54_36p	-1	reviewed	splice_site	c.1174-1	e3-1	1	-	-	-	no_errors
EFR3A	23167	genome.wustl.edu	36	8	133026219	133026219	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133026219	133026219	G	C	SNP	EFR3A	NM_015137	human	genbank	54_36p	1	validated	missense	c.133	p.V45L	1	NULL	superfamily_ARM repeat	-	no_errors
EFR3A	23167	genome.wustl.edu	36	8	133028010	133028010	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133028010	133028010	C	T	SNP	EFR3A	NM_015137	human	genbank	54_36p	1	validated	missense	c.314	p.A105V	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
OC90	729330	genome.wustl.edu	36	8	133106144	133106144	+	Nonsense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133106144	133106144	G	T	SNP	OC90	NM_001080399	human	genbank	54_36p	-1	validated	nonsense	c.1200	p.C400*	1	"HMMSmart_SM00085,HMMPfam_Phospholip_A2_1,superfamily_Phospholipase A2 PLA2,PatternScan_PA2_ASP"	"HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2,HMMPfam_Phospholip_A2_1,PatternScan_PA2_HIS,PatternScan_PA2_ASP"	-	no_errors
OC90	729330	genome.wustl.edu	36	8	133114486	133114486	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133114486	133114486	C	A	SNP	OC90	NM_001080399	human	genbank	54_36p	-1	validated	nonsense	c.841	p.E281*	0	NULL	"HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,PatternScan_PA2_HIS,PatternScan_PA2_ASP,superfamily_Phospholipase A2 PLA2"	-	no_errors
KCNQ3	3786	genome.wustl.edu	36	8	133265706	133265706	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133265706	133265706	G	A	SNP	KCNQ3	NM_004519	human	genbank	54_36p	-1	reviewed	nonsense	c.568	p.R190*	0.97	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
TMEM71	137835	genome.wustl.edu	36	8	133809389	133809389	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133809389	133809389	C	G	SNP	TMEM71	NM_144649	human	genbank	54_36p	-1	validated	silent	c.456	p.L152	0.01	NULL	NULL	-	no_errors
TMEM71	137835	genome.wustl.edu	36	8	133833240	133833240	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133833240	133833240	C	G	SNP	TMEM71	NM_144649	human	genbank	54_36p	-1	validated	missense	c.287	p.S96T	1	NULL	NULL	-	no_errors
PHF20L1	51105	genome.wustl.edu	36	8	133885459	133885459	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133885459	133885459	G	T	SNP	PHF20L1	NM_016018	human	genbank	54_36p	1	validated	nonsense	c.721	p.G241*	1	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMSmart_SM00743,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
PHF20L1	51105	genome.wustl.edu	36	8	133921010	133921010	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	133921010	133921010	G	A	SNP	PHF20L1	NM_016018	human	genbank	54_36p	1	validated	splice_site	c.2387+1	e17+1	1	-	-	-	no_errors
KHDRBS3	10656	genome.wustl.edu	36	8	136688425	136688425	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	136688425	136688425	G	A	SNP	KHDRBS3	NM_006558	human	genbank	54_36p	1	provisional	missense	c.853	p.D285N	1	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
KHDRBS3	10656	genome.wustl.edu	36	8	136726510	136726510	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	136726510	136726510	A	G	SNP	KHDRBS3	NM_006558	human	genbank	54_36p	1	provisional	missense	c.917	p.H306R	1	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139214064	139214064	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	139214064	139214064	A	G	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	missense	c.4175	p.F1392S	1	NULL	"superfamily_alpha/beta-Hydrolases,HMMPfam_DUF676"	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139222636	139222636	+	Silent	SNP	G	C	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	139222636	139222636	G	C	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.3777	p.T1259	0.98	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139233226	139233226	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	139233226	139233226	T	C	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	missense	c.2674	p.R892G	0	NULL	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	-	no_errors
FAM135B	51059	genome.wustl.edu	36	8	139249384	139249384	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	139249384	139249384	G	A	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.1194	p.I398	0.99	NULL	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	-	no_errors
COL22A1	169044	genome.wustl.edu	36	8	139728095	139728095	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	139728095	139728095	G	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.3460	p.P1154S	0	NULL	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
COL22A1	169044	genome.wustl.edu	36	8	139806843	139806843	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	139806843	139806843	A	G	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.2162	p.V721A	0.13	HMMPfam_Collagen	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
SGCZ	137868	genome.wustl.edu	36	8	13992458	13992458	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	13992458	13992458	A	T	SNP	SGCZ	NM_139167	human	genbank	54_36p	-1	reviewed	silent	c.804	p.S268	0.59	HMMPfam_Sarcoglycan_1	HMMPfam_Sarcoglycan_1	-	no_errors
KCNK9	51305	genome.wustl.edu	36	8	140700147	140700147	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	140700147	140700147	C	T	SNP	KCNK9	NM_016601	human	genbank	54_36p	-1	reviewed	missense	c.661	p.V221M	1	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	-	no_errors
SGCZ	137868	genome.wustl.edu	36	8	14139487	14139487	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	14139487	14139487	C	T	SNP	SGCZ	NM_139167	human	genbank	54_36p	-1	reviewed	missense	c.409	p.G137R	1	HMMPfam_Sarcoglycan_1	HMMPfam_Sarcoglycan_1	-	no_errors
DENND3	22898	genome.wustl.edu	36	8	142245538	142245538	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	142245538	142245538	C	T	SNP	DENND3	NM_014957	human	genbank	54_36p	1	validated	missense	c.1381	p.H461Y	0	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
FLJ43860	389690	genome.wustl.edu	36	8	142556718	142556718	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	142556718	142556718	C	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.1412	p.R471H	0.96	NULL	"superfamily_ARM repeat,HMMPfam_HEAT"	-	pseudogene
CYP11B1	1584	genome.wustl.edu	36	8	143957893	143957893	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	143957893	143957893	C	T	SNP	CYP11B1	ENST00000377675	human	ensembl	54_36p	-1	known	missense	c.245	p.R82Q	0	NULL	"superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP11B1	1584	genome.wustl.edu	36	8	143958074	143958074	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	143958074	143958074	A	T	SNP	CYP11B1	NM_000497	human	genbank	54_36p	-1	reviewed	missense	c.158	p.L53Q	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
C8orf73	642475	genome.wustl.edu	36	8	144725499	144725499	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	144725499	144725499	C	G	SNP	C8orf73	NM_001100878	human	genbank	54_36p	-1	validated	splice_site	c.295-1	e2-1	0	-	-	-	no_errors
EEF1D	1936	genome.wustl.edu	36	8	144740128	144740128	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	8	144740128	144740128	T	A	SNP	EEF1D	NM_032378	human	genbank	54_36p	-1	reviewed	missense	c.1129	p.I377F	1	NULL	"PatternScan_EF1BD_1,HMMPfam_EF-1_beta_acid,superfamily_eEF-1beta-like,HMMPfam_EF1_GNE,PatternScan_EF1BD_2"	-	no_errors
PLEC	5339	genome.wustl.edu	36	8	145066072	145066072	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	145066072	145066072	C	A	SNP	PLEC1	NM_201380	human	genbank	54_36p	-1	reviewed	missense	c.10316	p.R3439M	0.08	NULL	"HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	-	no_errors
SHARPIN	81858	genome.wustl.edu	36	8	145225847	145225847	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	145225847	145225847	G	A	SNP	SHARPIN	ENST00000321205	human	ensembl	54_36p	-1	known	missense	c.1082	p.P361L	0.02	NULL	superfamily_Ubiquitin-like	-	no_errors
KIFC2	90990	genome.wustl.edu	36	8	145663461	145663461	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	145663461	145663461	G	A	SNP	KIFC2	NM_145754	human	genbank	54_36p	1	provisional	missense	c.398	p.S133N	0.08	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
ZNF7	7553	genome.wustl.edu	36	8	146033605	146033605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	146033605	146033605	G	A	SNP	ZNF7	NM_003416	human	genbank	54_36p	1	validated	silent	c.156	p.E52	1	"superfamily_Krueppel-associated_box,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF7	7553	genome.wustl.edu	36	8	146039084	146039084	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	146039084	146039084	T	C	SNP	ZNF7	NM_003416	human	genbank	54_36p	1	validated	silent	c.1788	p.L596	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF16	7564	genome.wustl.edu	36	8	146127343	146127343	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	146127343	146127343	T	C	SNP	ZNF16	NM_001029976	human	genbank	54_36p	-1	reviewed	missense	c.1634	p.Y545C	0.25	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF16	7564	genome.wustl.edu	36	8	146128591	146128591	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	146128591	146128591	G	T	SNP	ZNF16	NM_001029976	human	genbank	54_36p	-1	reviewed	missense	c.386	p.S129Y	0	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF16	7564	genome.wustl.edu	36	8	146128673	146128673	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	146128673	146128673	G	A	SNP	ZNF16	NM_001029976	human	genbank	54_36p	-1	reviewed	nonsense	c.304	p.Q102*	0.02	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
DLGAP2	9228	genome.wustl.edu	36	8	1485067	1485067	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	1485067	1485067	C	T	SNP	DLGAP2	NM_004745	human	genbank	54_36p	1	reviewed	silent	c.801	p.N267	0.97	NULL	HMMPfam_GKAP	-	no_errors
MSR1	4481	genome.wustl.edu	36	8	16012099	16012099	+	Splice_Site	SNP	C	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	16012099	16012099	C	T	SNP	MSR1	NM_138715	human	genbank	54_36p	-1	reviewed	splice_site	c.1223-1	e9-1	1	-	-	-	no_errors
SLC7A2	6542	genome.wustl.edu	36	8	17452228	17452228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	17452228	17452228	G	C	SNP	SLC7A2	NM_003046	human	genbank	54_36p	1	validated	missense	c.859	p.G287R	1	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
MTUS1	57509	genome.wustl.edu	36	8	17656868	17656868	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	17656868	17656868	G	A	SNP	MTUS1	NM_001001924	human	genbank	54_36p	-1	reviewed	silent	c.729	p.Y243	0	NULL	NULL	-	no_errors
ARHGEF10	9639	genome.wustl.edu	36	8	1799956	1799956	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	1799956	1799956	A	C	SNP	ARHGEF10	NM_014629	human	genbank	54_36p	1	reviewed	missense	c.492	p.E164D	0	NULL	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,superfamily_WD40_like,PatternScan_THIOL_PROTEASE_HIS"	-	no_errors
NAT2	10	genome.wustl.edu	36	8	18302467	18302467	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	18302467	18302467	T	C	SNP	NAT2	NM_000015	human	genbank	54_36p	1	reviewed	missense	c.674	p.L225S	1	"superfamily_SSF54001,HMMPfam_Acetyltransf_2"	"superfamily_SSF54001,HMMPfam_Acetyltransf_2"	-	no_errors
CSGALNACT1	55790	genome.wustl.edu	36	8	19360412	19360412	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	19360412	19360412	T	C	SNP	CSGALNACT1	NM_018371	human	genbank	54_36p	-1	validated	missense	c.656	p.D219G	1	HMMPfam_CHGN	"HMMPfam_CHGN,superfamily_SSF53448"	-	no_errors
SLC18A1	6570	genome.wustl.edu	36	8	20082690	20082691	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	20082690	20082691	-	T	INS	SLC18A1	NM_003053	human	genbank	54_36p	-1	validated	frame_shift_ins	c.66_65	p.V23fs	1.000:0.998	superfamily_MFS_gen_substrate_transporter	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
MYOM2	9172	genome.wustl.edu	36	8	2044699	2044699	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	2044699	2044699	T	C	SNP	MYOM2	NM_003970	human	genbank	54_36p	1	validated	silent	c.3150	p.I1050	0.88	NULL	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_ig,HMMSmart_IGc2"	-	no_errors
HR	55806	genome.wustl.edu	36	8	22037258	22037258	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	22037258	22037258	G	A	SNP	HR	NM_005144	human	genbank	54_36p	-1	reviewed	silent	c.1764	p.A588	0	NULL	"HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
PPP3CC	5533	genome.wustl.edu	36	8	22436177	22436177	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	22436177	22436177	C	T	SNP	PPP3CC	NM_005605	human	genbank	54_36p	1	provisional	missense	c.913	p.P305S	1	"superfamily_SSF56300,HMMSmart_PP2Ac"	"superfamily_SSF56300,HMMSmart_PP2Ac,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE"	-	no_errors
LOXL2	4017	genome.wustl.edu	36	8	23273616	23273616	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	23273616	23273616	C	T	SNP	LOXL2	NM_002318	human	genbank	54_36p	-1	reviewed	missense	c.463	p.G155S	1	"superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR"	"superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE"	-	no_errors
DOCK5	80005	genome.wustl.edu	36	8	25192019	25192019	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	25192019	25192019	T	C	SNP	DOCK5	NM_024940	human	genbank	54_36p	1	validated	missense	c.242	p.I81T	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
EBF2	64641	genome.wustl.edu	36	8	25800201	25800201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	25800201	25800201	C	A	SNP	EBF2	NM_022659	human	genbank	54_36p	-1	validated	missense	c.996	p.R332S	1	"HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG"	"PatternScan_COE,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMSmart_HLH"	-	no_errors
EBF2	64641	genome.wustl.edu	36	8	25955570	25955570	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	25955570	25955570	C	A	SNP	EBF2	NM_022659	human	genbank	54_36p	-1	validated	missense	c.246	p.E82D	1	NULL	"HMMSmart_HLH,HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set,PatternScan_COE"	-	no_errors
ADRA1A	148	genome.wustl.edu	36	8	26777636	26777636	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	26777636	26777636	G	C	SNP	ADRA1A	NM_033303	human	genbank	54_36p	-1	reviewed	missense	c.768	p.H256Q	0.99	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CHRNA2	1135	genome.wustl.edu	36	8	27383308	27383308	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	27383308	27383308	G	A	SNP	CHRNA2	NM_000742	human	genbank	54_36p	-1	validated	missense	c.181	p.R61W	0.98	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
EPHX2	2053	genome.wustl.edu	36	8	27425322	27425322	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	27425322	27425322	G	C	SNP	EPHX2	NM_001979	human	genbank	54_36p	1	reviewed	missense	c.713	p.S238T	0.21	superfamily_SSF53474	"HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF53474,HMMPfam_Abhydrolase_1"	-	no_errors
CLU	1191	genome.wustl.edu	36	8	27518595	27518595	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	27518595	27518595	G	A	SNP	CLU	NM_001831	human	genbank	54_36p	-1	validated	missense	c.748	p.R250W	0	"HMMPfam_Clusterin,HMMSmart_CLb"	"HMMPfam_Clusterin,HMMSmart_CLb,PatternScan_CLUSTERIN_1,HMMSmart_CLa,PatternScan_CLUSTERIN_2"	-	no_errors
C8orf80	389643	genome.wustl.edu	36	8	27943808	27943808	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	27943808	27943808	T	A	SNP	C8orf80	NM_001010906	human	genbank	54_36p	-1	predicted	missense	c.1955	p.K652M	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	2802658	2802658	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	2802658	2802658	A	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.9785	p.F3262Y	0.99	NULL	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CSMD1	64478	genome.wustl.edu	36	8	2807451	2807451	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	2807451	2807451	G	C	SNP	CSMD1	ENST00000335551	human	ensembl	54_36p	-1	known	missense	c.8033	p.S2678C	0.24	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_start_codon
CSMD1	64478	genome.wustl.edu	36	8	2863527	2863531	+	Frame_Shift_Del	DEL	CGTTC	CGTTC	-	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	CGTTC	CGTTC	CGTTC	-	CGTTC	CGTTC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	2863527	2863531	CGTTC	-	DEL	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	frame_shift_del	c.7912_7908	p.W2636fs	0.105:0.991:0.991:0.855:1.000	NULL	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	"(deletion:cds_exon[2863406,2863579])"	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CSMD1	64478	genome.wustl.edu	36	8	2951467	2951467	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	2951467	2951467	T	A	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.6943	p.N2315Y	0.07	NULL	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RBPMS	11030	genome.wustl.edu	36	8	30451842	30451842	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	30451842	30451842	G	C	SNP	RBPMS	NM_001008712	human	genbank	54_36p	1	reviewed	silent	c.72	p.R24	1	superfamily_SSF54928	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
GSR	2936	genome.wustl.edu	36	8	30686962	30686962	+	Splice_Site	DEL	C	-	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	-	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	8	30686962	30686962	C	-	DEL	GSR	NM_000637	human	genbank	54_36p	-1	validated	splice_site_del	c.334-1	e3-1	1	-	-	"(deletion:intron[30686962,30689120])"	no_errors
TEX15	56154	genome.wustl.edu	36	8	30821929	30821929	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	30821929	30821929	G	A	SNP	TEX15	NM_031271	human	genbank	54_36p	-1	validated	missense	c.4147	p.L1383F	0	NULL	NULL	-	no_errors
WRN	7486	genome.wustl.edu	36	8	31068951	31068951	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	31068951	31068951	T	G	SNP	WRN	NM_000553	human	genbank	54_36p	1	reviewed	missense	c.1893	p.I631M	0.59	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"HMMSmart_SM00474,HMMPfam_3_5_exonuc,superfamily_Ribonuclease H-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_RQC,HMMSmart_SM00341,HMMPfam_HRDC"	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	3204122	3204122	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	3204122	3204122	C	T	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	nonsense	c.3267	p.W1089*	1	NULL	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CSMD1	64478	genome.wustl.edu	36	8	3254480	3254480	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	3254480	3254480	C	G	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	silent	c.1620	p.T540	0.01	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NRG1	3084	genome.wustl.edu	36	8	32625179	32625179	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	32625179	32625179	G	T	SNP	NRG1	NM_013959	human	genbank	54_36p	1	reviewed	missense	c.401	p.W134L	0.99	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1"	-	no_errors
FUT10	84750	genome.wustl.edu	36	8	33366290	33366290	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	33366290	33366290	A	C	SNP	FUT10	NM_032664	human	genbank	54_36p	-1	validated	silent	c.945	p.L315	1	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors
UNC5D	137970	genome.wustl.edu	36	8	35660770	35660770	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	35660770	35660770	C	A	SNP	UNC5D	NM_080872	human	genbank	54_36p	1	validated	missense	c.719	p.A240D	1	superfamily_SSF48726	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
UNC5D	137970	genome.wustl.edu	36	8	35663633	35663633	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	35663633	35663633	A	G	SNP	UNC5D	NM_080872	human	genbank	54_36p	1	validated	silent	c.933	p.E311	1	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1"	"PatternScan_SERPIN,HMMPfam_Death,HMMSmart_DEATH,HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_ZU5,HMMSmart_IGc2,superfamily_DEATH_like,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
GOT1L1	137362	genome.wustl.edu	36	8	37912392	37912392	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	37912392	37912392	A	G	SNP	GOT1L1	ENST00000307599	human	ensembl	54_36p	-1	known	missense	c.914	p.L305P	0.98	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	-	no_errors
ASH2L	9070	genome.wustl.edu	36	8	38083730	38083730	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	38083730	38083730	C	G	SNP	ASH2L	NM_004674	human	genbank	54_36p	1	validated	missense	c.290	p.T97S	0.99	NULL	"HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
STAR	6770	genome.wustl.edu	36	8	38125411	38125411	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	8	38125411	38125411	A	T	SNP	STAR	NM_000349	human	genbank	54_36p	-1	reviewed	missense	c.83	p.V28E	0	NULL	"superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
ADAM32	203102	genome.wustl.edu	36	8	39187937	39187937	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	39187937	39187937	G	A	SNP	ADAM32	NM_145004	human	genbank	54_36p	1	validated	silent	c.1170	p.P390	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM2	2515	genome.wustl.edu	36	8	39721571	39721571	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	39721571	39721571	T	A	SNP	ADAM2	NM_001464	human	genbank	54_36p	-1	reviewed	splice_site	c.2175-2	e20-2	0.7	-	-	-	no_errors
SLC20A2	6575	genome.wustl.edu	36	8	42448973	42448973	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	42448973	42448973	G	A	SNP	SLC20A2	NM_006749	human	genbank	54_36p	-1	provisional	silent	c.93	p.N31	1	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors
POTEA	340441	genome.wustl.edu	36	8	43271424	43271424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	43271424	43271424	C	A	SNP	POTEA	NM_001005365	human	genbank	54_36p	1	provisional	missense	c.404	p.A135D	0.99	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
PRKDC	5591	genome.wustl.edu	36	8	48909312	48909312	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	48909312	48909312	T	C	SNP	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	missense	c.8147	p.K2716R	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
SNAI2	6591	genome.wustl.edu	36	8	49994099	49994099	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	49994099	49994099	C	A	SNP	SNAI2	NM_003068	human	genbank	54_36p	-1	reviewed	silent	c.627	p.G209	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SNTG1	54212	genome.wustl.edu	36	8	51867822	51867822	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	51867822	51867822	C	A	SNP	SNTG1	NM_018967	human	genbank	54_36p	1	reviewed	nonsense	c.1434	p.C478*	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
PXDNL	137902	genome.wustl.edu	36	8	52414843	52414843	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	52414843	52414843	C	G	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	missense	c.4040	p.G1347A	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ST18	9705	genome.wustl.edu	36	8	53255238	53255238	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	53255238	53255238	C	T	SNP	ST18	NM_014682	human	genbank	54_36p	-1	validated	missense	c.274	p.A92T	0.91	NULL	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1"	-	no_errors
RB1CC1	9821	genome.wustl.edu	36	8	53717642	53717642	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	53717642	53717642	C	A	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	nonsense	c.4159	p.E1387*	1	NULL	"superfamily_SSF54236,HMMPfam_ATG11"	-	no_errors
RB1CC1	9821	genome.wustl.edu	36	8	53732895	53732895	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	53732895	53732895	C	T	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	missense	c.2047	p.A683T	0.99	NULL	"HMMPfam_ATG11,superfamily_SSF54236"	-	no_errors
RB1CC1	9821	genome.wustl.edu	36	8	53749013	53749013	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	53749013	53749013	T	C	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	missense	c.947	p.D316G	1	NULL	"HMMPfam_ATG11,superfamily_SSF54236"	-	no_errors
RB1CC1	9821	genome.wustl.edu	36	8	53749201	53749201	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	53749201	53749201	A	C	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	silent	c.759	p.S253	0.01	NULL	"HMMPfam_ATG11,superfamily_SSF54236"	-	no_errors
OPRK1	4986	genome.wustl.edu	36	8	54304520	54304520	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	54304520	54304520	A	G	SNP	OPRK1	NM_000912	human	genbank	54_36p	-1	validated	missense	c.1033	p.C345R	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LYN	4067	genome.wustl.edu	36	8	57041944	57041944	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	57041944	57041944	G	C	SNP	LYN	NM_002350	human	genbank	54_36p	1	validated	missense	c.907	p.V303L	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
SDR16C5	195814	genome.wustl.edu	36	8	57391337	57391337	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	57391337	57391337	T	G	SNP	SDR16C5	NM_138969	human	genbank	54_36p	-1	validated	missense	c.124	p.I42L	0.99	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	-	no_errors
PENK	5179	genome.wustl.edu	36	8	57516417	57516417	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	57516417	57516417	C	G	SNP	PENK	NM_006211	human	genbank	54_36p	-1	validated	missense	c.772	p.E258Q	1	NULL	"HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR"	-	no_errors
PENK	5179	genome.wustl.edu	36	8	57516543	57516543	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	57516543	57516543	T	C	SNP	PENK	NM_006211	human	genbank	54_36p	-1	validated	missense	c.646	p.R216G	1	NULL	"HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR"	-	no_errors
UBXN2B	137886	genome.wustl.edu	36	8	59514807	59514807	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	59514807	59514807	G	A	SNP	UBXN2B	NM_001077619	human	genbank	54_36p	1	validated	missense	c.595	p.D199N	1	"superfamily_SEP,HMMSmart_SEP,HMMPfam_SEP"	"superfamily_SEP,HMMSmart_SEP,HMMPfam_SEP,superfamily_SSF54236,HMMPfam_UBX,HMMSmart_UBX"	-	no_errors
CHD7	55636	genome.wustl.edu	36	8	61905599	61905599	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	61905599	61905599	T	G	SNP	CHD7	NM_017780	human	genbank	54_36p	1	reviewed	silent	c.3687	p.L1229	1	HMMPfam_SNF2_N	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
CHD7	55636	genome.wustl.edu	36	8	61913209	61913209	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	8	61913209	61913209	A	G	SNP	CHD7	NM_017780	human	genbank	54_36p	1	reviewed	silent	c.4374	p.K1458	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CLVS1	157807	genome.wustl.edu	36	8	62375103	62375103	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	62375103	62375103	C	G	SNP	RLBP1L1	NM_173519	human	genbank	54_36p	1	validated	missense	c.163	p.Q55E	0.99	superfamily_CRAL/TRIO N-terminal domain	"superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMPfam_CRAL_TRIO,superfamily_CRAL/TRIO domain,HMMSmart_SM00516"	-	no_errors
ASPH	444	genome.wustl.edu	36	8	62718502	62718502	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	62718502	62718502	T	G	SNP	ASPH	NM_004318	human	genbank	54_36p	-1	validated	missense	c.754	p.T252P	0.41	"HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452"	"HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452,HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197"	-	no_errors
TRIM55	84675	genome.wustl.edu	36	8	67202171	67202171	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	67202171	67202171	G	A	SNP	TRIM55	NM_184085	human	genbank	54_36p	1	reviewed	silent	c.114	p.V38	1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336"	-	no_errors
ADHFE1	137872	genome.wustl.edu	36	8	67520078	67520078	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	67520078	67520078	C	A	SNP	ADHFE1	NM_144650	human	genbank	54_36p	1	validated	missense	c.425	p.T142N	1	"superfamily_Dehydroquinate synthase-like,HMMPfam_Fe-ADH"	"superfamily_Dehydroquinate synthase-like,HMMPfam_Fe-ADH"	-	no_errors
MYBL1	4603	genome.wustl.edu	36	8	67655103	67655103	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	67655103	67655103	A	G	SNP	MYBL1	NM_001080416	human	genbank	54_36p	-1	validated	missense	c.920	p.M307T	1	NULL	"superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,HMMPfam_Wos2,HMMPfam_Cmyb_C"	-	no_errors
VCPIP1	80124	genome.wustl.edu	36	8	67739740	67739740	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	67739740	67739740	C	A	SNP	VCPIP1	NM_025054	human	genbank	54_36p	-1	validated	missense	c.2008	p.G670C	1	NULL	HMMPfam_OTU	-	no_errors
SGK3	23678	genome.wustl.edu	36	8	67906081	67906081	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	67906081	67906081	G	C	SNP	SGK3	NM_001033578	human	genbank	54_36p	1	reviewed	missense	c.506	p.G169A	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C"	-	no_errors
C8orf45	157777	genome.wustl.edu	36	8	67952151	67952151	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	67952151	67952151	T	G	SNP	C8orf45	NM_173518	human	genbank	54_36p	1	validated	missense	c.284	p.L95R	1	NULL	NULL	-	no_errors
CSPP1	79848	genome.wustl.edu	36	8	68170433	68170433	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	68170433	68170433	G	T	SNP	CSPP1	NM_001077204	human	genbank	54_36p	1	validated	missense	c.967	p.D323Y	0.31	NULL	NULL	-	no_errors
CSPP1	79848	genome.wustl.edu	36	8	68250188	68250188	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	68250188	68250188	G	C	SNP	CSPP1	NM_001077204	human	genbank	54_36p	1	validated	missense	c.3162	p.K1054N	1	NULL	NULL	-	no_errors
ARFGEF1	10565	genome.wustl.edu	36	8	68341919	68341919	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	68341919	68341919	T	C	SNP	ARFGEF1	NM_006421	human	genbank	54_36p	-1	reviewed	silent	c.1773	p.Q591	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981"	-	no_errors
CPA6	57094	genome.wustl.edu	36	8	68502840	68502840	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	68502840	68502840	C	T	SNP	CPA6	NM_020361	human	genbank	54_36p	-1	validated	silent	c.1122	p.T374	0.04	"superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
CPA6	57094	genome.wustl.edu	36	8	68558631	68558631	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	68558631	68558631	T	A	SNP	CPA6	NM_020361	human	genbank	54_36p	-1	validated	missense	c.764	p.K255I	1	"HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases"	"HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors,superfamily_Zn-dependent exopeptidases"	-	no_errors
C8orf34	116328	genome.wustl.edu	36	8	69514291	69514291	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	69514291	69514291	T	C	SNP	C8orf34	ENST00000349492	human	ensembl	54_36p	1	known	silent	c.331	p.L111	1	NULL	NULL	-	no_errors
SULF1	23213	genome.wustl.edu	36	8	70713610	70713610	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	70713610	70713610	T	C	SNP	SULF1	NM_015170	human	genbank	54_36p	1	validated	silent	c.2514	p.Y838	0.98	NULL	"PatternScan_SULFATASE_2,HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core,PatternScan_SULFATASE_1"	-	no_errors
SLCO5A1	81796	genome.wustl.edu	36	8	70748033	70748033	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	70748033	70748033	A	G	SNP	SLCO5A1	NM_030958	human	genbank	54_36p	-1	reviewed	silent	c.2172	p.G724	1	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
SLCO5A1	81796	genome.wustl.edu	36	8	70836541	70836541	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	70836541	70836541	A	G	SNP	SLCO5A1	NM_030958	human	genbank	54_36p	-1	reviewed	missense	c.1031	p.I344T	1	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter"	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
PRDM14	63978	genome.wustl.edu	36	8	71141073	71141073	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	71141073	71141073	C	A	SNP	PRDM14	NM_024504	human	genbank	54_36p	-1	validated	silent	c.1134	p.V378	1	NULL	"HMMSmart_SET,superfamily_SSF82199,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NCOA2	10499	genome.wustl.edu	36	8	71203286	71203286	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	71203286	71203286	A	C	SNP	NCOA2	NM_006540	human	genbank	54_36p	-1	validated	missense	c.3617	p.L1206R	1	NULL	"superfamily_HLH_basic,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMSmart_PAC,HMMPfam_SRC-1,superfamily_Nuc_recept_coact,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518"	-	no_errors
XKR9	389668	genome.wustl.edu	36	8	71809051	71809051	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	71809051	71809051	T	C	SNP	XKR9	NM_001011720	human	genbank	54_36p	1	provisional	silent	c.960	p.P320	0	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors
TRPA1	8989	genome.wustl.edu	36	8	73112841	73112841	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	73112841	73112841	A	G	SNP	TRPA1	NM_007332	human	genbank	54_36p	-1	reviewed	silent	c.2316	p.T772	0.81	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_EF_HAND_1,HMMPfam_Ion_trans"	-	no_errors
TRPA1	8989	genome.wustl.edu	36	8	73143827	73143827	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	73143827	73143827	A	G	SNP	TRPA1	NM_007332	human	genbank	54_36p	-1	reviewed	silent	c.429	p.N143	0.08	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,PatternScan_EF_HAND_1"	-	no_errors
TERF1	7013	genome.wustl.edu	36	8	74099610	74099610	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	74099610	74099610	G	A	SNP	TERF1	NM_017489	human	genbank	54_36p	1	reviewed	splice_site	c.625-1	e5-1	1	-	-	-	no_errors
PI15	51050	genome.wustl.edu	36	8	75918788	75918788	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	75918788	75918788	T	A	SNP	PI15	NM_015886	human	genbank	54_36p	1	reviewed	silent	c.291	p.L97	0.96	"superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP"	"PatternScan_CRISP_1,superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP,PatternScan_CRISP_2"	-	no_errors
FAM90A10	441328	genome.wustl.edu	36	8	7664674	7664674	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	7664674	7664674	C	A	SNP	FAM90A10	XM_496957	human	genbank	54_36p	1	model	missense	c.272	p.A91D	0	NULL	NULL	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77926296	77926296	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	77926296	77926296	T	A	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	missense	c.4449	p.N1483K	1	NULL	"HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77929597	77929597	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	77929597	77929597	A	C	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	missense	c.7750	p.N2584H	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZFHX4	79776	genome.wustl.edu	36	8	77930712	77930712	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	77930712	77930712	C	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	silent	c.8865	p.G2955	0.98	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
TPD52	7163	genome.wustl.edu	36	8	81139280	81139282	+	In_Frame_Del	DEL	TCT	TCT	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	TCT	TCT	TCT	-	TCT	TCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	81139280	81139282	TCT	-	DEL	TPD52	NM_001025252	human	genbank	54_36p	-1	validated	in_frame_del	c.243_241	p.R81in_frame_del	0.863:0.862:0.851	HMMPfam_TPD52	HMMPfam_TPD52	"(deletion:cds_exon[81139268,81139383])"	no_errors
CHMP4C	92421	genome.wustl.edu	36	8	82827913	82827913	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	82827913	82827913	G	T	SNP	CHMP4C	NM_152284	human	genbank	54_36p	1	validated	missense	c.250	p.G84C	1	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors
E2F5	1875	genome.wustl.edu	36	8	86313249	86313249	+	Missense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	8	86313249	86313249	T	A	SNP	E2F5	NM_001951	human	genbank	54_36p	1	reviewed	missense	c.941	p.L314H	0.97	NULL	"superfamily_SSF46785,HMMPfam_E2F_TDP"	-	no_errors
LOC392242	392242	genome.wustl.edu	36	8	86743395	86743395	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	86743395	86743395	A	G	SNP	LOC392242	XR_041124	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PSKH2	85481	genome.wustl.edu	36	8	87145407	87145407	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	87145407	87145407	G	T	SNP	PSKH2	NM_033126	human	genbank	54_36p	-1	provisional	missense	c.755	p.T252K	0.99	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
CNGB3	54714	genome.wustl.edu	36	8	87729222	87729222	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	87729222	87729222	C	T	SNP	CNGB3	NM_019098	human	genbank	54_36p	-1	validated	missense	c.913	p.A305T	0.02	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
MMP16	4325	genome.wustl.edu	36	8	89278518	89278518	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	8	89278518	89278518	T	C	SNP	MMP16	NM_005941	human	genbank	54_36p	-1	reviewed	missense	c.266	p.D89G	1	"superfamily_PGBD-like,HMMPfam_PG_binding_1"	###############################################################################################################################################################################################################################################################	-	no_errors
PPP1R3B	79660	genome.wustl.edu	36	8	9035843	9035843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	9035843	9035843	C	A	SNP	PPP1R3B	NM_024607	human	genbank	54_36p	-1	validated	missense	c.729	p.M243I	0	NULL	HMMPfam_CBM_21	-	no_errors
RIPK2	8767	genome.wustl.edu	36	8	90851276	90851276	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	90851276	90851276	T	A	SNP	RIPK2	NM_003821	human	genbank	54_36p	1	reviewed	missense	c.623	p.I208N	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_DEATH domain,HMMPfam_CARD"	-	no_errors
SLC26A7	115111	genome.wustl.edu	36	8	92376998	92376998	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	92376998	92376998	T	G	SNP	SLC26A7	NM_134266	human	genbank	54_36p	1	reviewed	missense	c.368	p.M123R	0.01	NULL	"HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
SLC26A7	115111	genome.wustl.edu	36	8	92419638	92419638	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	92419638	92419638	T	G	SNP	SLC26A7	NM_134266	human	genbank	54_36p	1	reviewed	splice_site	c.878+2	e6+2	1	-	-	-	no_errors
TMEM67	91147	genome.wustl.edu	36	8	94837224	94837224	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	94837224	94837224	A	G	SNP	TMEM67	NM_153704	human	genbank	54_36p	1	reviewed	missense	c.236	p.N79S	1	superfamily_Growth factor receptor domain	"superfamily_Growth factor receptor domain,PatternScan_COF_1,HMMPfam_Meckelin"	-	no_errors
TMEM67	91147	genome.wustl.edu	36	8	94878859	94878859	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	8	94878859	94878859	C	T	SNP	TMEM67	NM_153704	human	genbank	54_36p	1	reviewed	silent	c.2055	p.V685	0.92	HMMPfam_Meckelin	"PatternScan_COF_1,superfamily_Growth factor receptor domain,HMMPfam_Meckelin"	-	no_errors
CDH17	1015	genome.wustl.edu	36	8	95241470	95241470	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	95241470	95241470	T	C	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	missense	c.1456	p.K486E	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
CDH17	1015	genome.wustl.edu	36	8	95241475	95241475	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	95241475	95241475	C	A	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	missense	c.1451	p.S484I	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
CDH17	1015	genome.wustl.edu	36	8	95258002	95258002	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	95258002	95258002	G	A	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	nonsense	c.367	p.R123*	0.27	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
DPY19L4	286148	genome.wustl.edu	36	8	95861770	95861770	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	95861770	95861770	T	A	SNP	DPY19L4	NM_181787	human	genbank	54_36p	1	validated	missense	c.1583	p.I528N	1	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
PLEKHF2	79666	genome.wustl.edu	36	8	96235865	96235865	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	96235865	96235865	G	T	SNP	PLEKHF2	NM_024613	human	genbank	54_36p	1	provisional	missense	c.417	p.K139N	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF"	-	no_errors
MATN2	4147	genome.wustl.edu	36	8	99023205	99023205	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	99023205	99023205	A	T	SNP	MATN2	NM_002380	human	genbank	54_36p	1	reviewed	missense	c.737	p.E246V	0.98	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179"	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil"	-	no_errors
MATN2	4147	genome.wustl.edu	36	8	99109104	99109104	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	99109104	99109104	G	T	SNP	MATN2	NM_002380	human	genbank	54_36p	1	reviewed	nonsense	c.2227	p.E743*	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil,superfamily_vWA-like,superfamily_EGF/Laminin"	-	no_errors
LOC642585	642585	genome.wustl.edu	36	X	80072304	80072304	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	80072304	80072304	C	T	SNP	LOC642585	XR_038848	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100132402	100132402	genome.wustl.edu	36	10	81642848	81642848	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	10	81642848	81642848	G	A	SNP	LOC100132402	XR_037723	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.82	-	-	-	pseudogene
LOC648283	648283	genome.wustl.edu	36	X	82891177	82891177	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	82891177	82891177	G	A	SNP	LOC648283	XR_038857	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.27	-	-	-	pseudogene
ENSG00000214931	0	genome.wustl.edu	36	9	83720437	83720437	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	83720437	83720437	A	T	SNP	ENSG00000214931	ENST00000399261	human	ensembl	54_36p	1	known	missense	c.538	p.I180F	0	NULL	NULL	-	no_errors
ENSG00000204562	0	genome.wustl.edu	36	9	83722276	83722276	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	83722276	83722276	T	G	SNP	ENSG00000204562	ENST00000376459	human	ensembl	54_36p	1	known	missense	c.149	p.L50R	0	NULL	NULL	-	no_errors
ENSG00000204562	0	genome.wustl.edu	36	9	83722308	83722308	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	83722308	83722308	C	G	SNP	ENSG00000204562	ENST00000376459	human	ensembl	54_36p	1	known	missense	c.181	p.Q61E	0	NULL	NULL	-	no_errors
LOC100128775	100128775	genome.wustl.edu	36	1	84483051	84483051	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	84483051	84483051	C	T	SNP	LOC100128775	XR_039769	human	genbank	54_36p	1	model	rna	NULL	NULL	0.35	-	-	-	pseudogene
LOC100130211	100130211	genome.wustl.edu	36	X	85302150	85302150	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	85302150	85302150	T	G	SNP	LOC100130211	XM_001717632	human	genbank	54_36p	-1	model	missense	c.851	p.E284A	1	"HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"	"HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"	-	pseudogene
ELMOD3	84173	genome.wustl.edu	36	2	85452087	85452087	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	85452087	85452087	C	G	SNP	ELMOD3	NM_032213	human	genbank	54_36p	1	validated	missense	c.498	p.S166R	1	HMMPfam_ELMO_CED12	HMMPfam_ELMO_CED12	-	no_errors
ENSG00000222903	0	genome.wustl.edu	36	4	85828147	85828147	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	85828147	85828147	G	A	SNP	ENSG00000222903	ENST00000410971	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.99	-	-	-	no_errors
IGKV4-1	28908	genome.wustl.edu	36	2	88966564	88966564	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	88966564	88966564	G	T	SNP	IGKV4-1	ENST00000390243	human	ensembl	54_36p	1	known	missense	c.143	p.S48I	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
HSP90AB3P	3327	genome.wustl.edu	36	4	89033947	89033947	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	89033947	89033947	C	A	SNP	HSP90AB3P	ENST00000327934	human	ensembl	54_36p	1	known	missense	c.1550	p.A517D	0.97	"HMMPfam_HSP90,superfamily_SSF110942"	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF110942"	-	no_errors
ENSG00000204456	0	genome.wustl.edu	36	11	89139788	89139788	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	89139788	89139788	A	G	SNP	ENSG00000204456	ENST00000375974	human	ensembl	54_36p	-1	known	missense	c.139	p.S47P	0	NULL	NULL	-	no_start_codon:no_stop_codon
LOC100130134	100130134	genome.wustl.edu	36	X	89181291	89181291	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	89181291	89181291	A	G	SNP	LOC100130134	XR_037810	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
IGKV1-5	28299	genome.wustl.edu	36	2	89302534	89302534	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	89302534	89302534	G	T	SNP	IGKV1-5	ENST00000390259	human	ensembl	54_36p	-1	known	silent	c.120	p.S40	0.78	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211622	0	genome.wustl.edu	36	2	89624330	89624330	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	89624330	89624330	G	C	SNP	ENSG00000211622	ENST00000390267	human	ensembl	54_36p	1	known	silent	c.306	p.R102	0.92	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211634	0	genome.wustl.edu	36	2	89886467	89886467	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	89886467	89886467	A	C	SNP	ENSG00000211634	ENST00000390279	human	ensembl	54_36p	1	known	silent	c.118	p.R40	0.02	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
ENSG00000211635	0	genome.wustl.edu	36	2	89897347	89897347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	89897347	89897347	C	G	SNP	ENSG00000211635	ENST00000390280	human	ensembl	54_36p	1	known	missense	c.145	p.Q49E	0.02	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv"	-	no_stop_codon:bad_bp_length_for_coding_region
LOC645961	645961	genome.wustl.edu	36	9	89935409	89935409	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	89935409	89935409	C	T	SNP	LOC645961	XR_040572	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	no_errors
ENSG00000219492	0	genome.wustl.edu	36	4	8998011	8998011	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8998011	8998011	T	A	SNP	ENSG00000219492	ENST00000402465	human	ensembl	54_36p	-1	known	missense	c.101	p.D34V	0.96	"HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB"	"HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_stop_codon
ENSG00000219492	0	genome.wustl.edu	36	4	8998035	8998035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	8998035	8998035	G	T	SNP	ENSG00000219492	ENST00000402465	human	ensembl	54_36p	-1	known	missense	c.77	p.T26K	0.06	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_stop_codon
TBC1D2	55357	genome.wustl.edu	36	9	100005503	100005503	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	100005503	100005503	G	T	SNP	TBC1D2	NM_018421	human	genbank	54_36p	-1	validated	missense	c.2159	p.A720D	1	"superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC"	-	no_errors
ANKS6	203286	genome.wustl.edu	36	9	100592693	100592693	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	100592693	100592693	C	G	SNP	ANKS6	NM_173551	human	genbank	54_36p	-1	provisional	missense	c.376	p.V126L	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
COL15A1	1306	genome.wustl.edu	36	9	100807102	100807102	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	100807102	100807102	G	A	SNP	COL15A1	NM_001855	human	genbank	54_36p	1	reviewed	silent	c.1302	p.G434	0	NULL	"superfamily_ConA_like_lec_gl,HMMSmart_TSPN,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_Endostatin"	-	no_errors
COL15A1	1306	genome.wustl.edu	36	9	100850068	100850068	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	100850068	100850068	A	C	SNP	COL15A1	NM_001855	human	genbank	54_36p	1	reviewed	missense	c.2758	p.K920Q	1	"HMMPfam_Collagen,superfamily_C-type_lectin_fold"	"HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Endostatin,HMMPfam_Laminin_G_2,superfamily_C-type_lectin_fold"	-	no_errors
ALG2	85365	genome.wustl.edu	36	9	101020710	101020710	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	101020710	101020710	T	G	SNP	ALG2	NM_033087	human	genbank	54_36p	-1	reviewed	missense	c.578	p.H193P	0.99	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_Glycos_transf_1"	-	no_errors
INVS	27130	genome.wustl.edu	36	9	102044713	102044713	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	102044713	102044713	G	A	SNP	INVS	NM_014425	human	genbank	54_36p	1	reviewed	silent	c.837	p.K279	1	"HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
ZNF189	7743	genome.wustl.edu	36	9	103210792	103210792	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	103210792	103210792	A	G	SNP	ZNF189	NM_003452	human	genbank	54_36p	1	validated	silent	c.921	p.Q307	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RNF20	56254	genome.wustl.edu	36	9	103352710	103352710	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	103352710	103352710	T	G	SNP	RNF20	NM_019592	human	genbank	54_36p	1	reviewed	missense	c.1094	p.V365G	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
RNF20	56254	genome.wustl.edu	36	9	103353795	103353795	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	103353795	103353795	G	C	SNP	RNF20	NM_019592	human	genbank	54_36p	1	reviewed	missense	c.1281	p.E427D	0.99	NULL	"HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
GRIN3A	116443	genome.wustl.edu	36	9	103472539	103472539	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	103472539	103472539	G	T	SNP	GRIN3A	NM_133445	human	genbank	54_36p	-1	reviewed	missense	c.1976	p.T659N	1	"superfamily_SSF53850,HMMSmart_PBPe"	"superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan"	-	no_errors
DMRT2	10655	genome.wustl.edu	36	9	1046470	1046470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	1046470	1046470	C	G	SNP	DMRT2	NM_181872	human	genbank	54_36p	1	validated	missense	c.883	p.P295A	0.01	NULL	"superfamily_DM_DNA_bd,HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1"	-	no_errors
SMC2	10592	genome.wustl.edu	36	9	105927141	105927141	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	105927141	105927141	G	A	SNP	SMC2	NM_001042550	human	genbank	54_36p	1	validated	silent	c.2385	p.Q795	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
OR13C5	138799	genome.wustl.edu	36	9	106401084	106401084	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	106401084	106401084	C	A	SNP	OR13C5	NM_001004482	human	genbank	54_36p	-1	provisional	missense	c.432	p.M144I	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR13D1	286365	genome.wustl.edu	36	9	106497444	106497444	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	106497444	106497444	G	A	SNP	OR13D1	NM_001004484	human	genbank	54_36p	1	provisional	silent	c.921	p.G307	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
FKTN	2218	genome.wustl.edu	36	9	107417453	107417453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	107417453	107417453	C	T	SNP	FKTN	NM_001079802	human	genbank	54_36p	1	reviewed	missense	c.854	p.A285V	0.96	NULL	HMMPfam_LicD	-	no_errors
TMEM38B	55151	genome.wustl.edu	36	9	107507714	107507714	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9	107507714	107507714	C	A	SNP	TMEM38B	NM_018112	human	genbank	54_36p	1	provisional	missense	c.128	p.A43E	0.19	HMMPfam_DUF714	HMMPfam_DUF714	-	no_errors
ZNF462	58499	genome.wustl.edu	36	9	108729525	108729525	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	108729525	108729525	G	A	SNP	ZNF462	NM_021224	human	genbank	54_36p	1	validated	missense	c.3511	p.A1171T	0.91	superfamily_beta-sandwich domain of Sec23/24	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_beta-sandwich domain of Sec23/24"	-	no_errors
ZNF462	58499	genome.wustl.edu	36	9	108729542	108729542	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	108729542	108729542	G	A	SNP	ZNF462	NM_021224	human	genbank	54_36p	1	validated	silent	c.3528	p.L1176	1	superfamily_beta-sandwich domain of Sec23/24	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24"	-	no_errors
RAD23B	5887	genome.wustl.edu	36	9	109120884	109120884	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	109120884	109120884	C	T	SNP	RAD23B	NM_002874	human	genbank	54_36p	1	reviewed	missense	c.584	p.T195I	1	"superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165"	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,superfamily_XPC-binding domain,HMMSmart_SM00727,HMMPfam_XPC-binding"	-	no_errors
PTPN3	5774	genome.wustl.edu	36	9	111208622	111208622	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	111208622	111208622	A	C	SNP	PTPN3	NM_002829	human	genbank	54_36p	-1	reviewed	missense	c.1733	p.F578C	1	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPN3	5774	genome.wustl.edu	36	9	111224844	111224844	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	111224844	111224844	G	A	SNP	PTPN3	NM_002829	human	genbank	54_36p	-1	reviewed	missense	c.1111	p.R371C	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PALM2-AKAP2	445815	genome.wustl.edu	36	9	111727169	111727169	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	111727169	111727169	C	A	SNP	PALM2-AKAP2	NM_007203	human	genbank	54_36p	1	validated	missense	c.380	p.S127Y	0.99	NULL	HMMPfam_RII_binding_1	-	no_errors
PALM2	114299	genome.wustl.edu	36	9	111745233	111745233	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	111745233	111745233	A	G	SNP	PALM2	NM_053016	human	genbank	54_36p	1	validated	missense	c.949	p.M317V	1	HMMPfam_Paralemmin	HMMPfam_Paralemmin	-	no_errors
PALM2-AKAP2	445815	genome.wustl.edu	36	9	111939521	111939521	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	111939521	111939521	G	C	SNP	PALM2-AKAP2	NM_007203	human	genbank	54_36p	1	validated	missense	c.1876	p.G626R	0.01	NULL	HMMPfam_RII_binding_1	-	no_errors
SVEP1	79987	genome.wustl.edu	36	9	112189409	112189409	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	112189409	112189409	C	T	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.10037	p.S3346N	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	###############################################################################################################################################################################################################################################################	-	no_errors
SVEP1	79987	genome.wustl.edu	36	9	112208884	112208884	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	112208884	112208884	T	G	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	silent	c.8817	p.A2939	0.7	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	###############################################################################################################################################################################################################################################################	-	no_errors
SVEP1	79987	genome.wustl.edu	36	9	112352170	112352170	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	112352170	112352170	T	A	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.567	p.K189N	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	###############################################################################################################################################################################################################################################################	-	no_errors
MUSK	4593	genome.wustl.edu	36	9	112570003	112570003	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	112570003	112570003	G	A	SNP	MUSK	NM_005592	human	genbank	54_36p	1	validated	missense	c.1003	p.V335I	1	HMMPfam_Fz	###############################################################################################################################################################################################################################################################	-	no_errors
LPAR1	1902	genome.wustl.edu	36	9	112744091	112744091	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	112744091	112744091	T	C	SNP	LPAR1	NM_001401	human	genbank	54_36p	-1	reviewed	missense	c.224	p.Y75C	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
C9orf84	158401	genome.wustl.edu	36	9	113516621	113516621	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	113516621	113516621	C	A	SNP	C9orf84	NM_173521	human	genbank	54_36p	-1	validated	missense	c.2148	p.K716N	0.69	NULL	NULL	-	no_errors
C9orf84	158401	genome.wustl.edu	36	9	113529997	113529997	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	113529997	113529997	G	A	SNP	C9orf84	NM_173521	human	genbank	54_36p	-1	validated	missense	c.1379	p.A460V	0	NULL	NULL	-	no_errors
UGCG	7357	genome.wustl.edu	36	9	113731768	113731768	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	113731768	113731768	G	A	SNP	UGCG	NM_003358	human	genbank	54_36p	1	reviewed	silent	c.726	p.A242	1	superfamily_SSF53448	"superfamily_SSF53448,HMMPfam_Glycos_transf_2"	-	no_errors
ZFP37	7539	genome.wustl.edu	36	9	114858731	114858731	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	114858731	114858731	C	T	SNP	ZFP37	NM_003408	human	genbank	54_36p	-1	provisional	missense	c.59	p.R20K	0.02	NULL	"HMMSmart_KRAB,HMMPfam_KRAB,superfamily_Krueppel-associated_box,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FKBP15	23307	genome.wustl.edu	36	9	114971419	114971419	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	114971419	114971419	A	T	SNP	FKBP15	NM_015258	human	genbank	54_36p	-1	validated	missense	c.3391	p.S1131T	0.01	NULL	"superfamily_FKBP-like,HMMPfam_FKBP_C"	-	no_errors
FKBP15	23307	genome.wustl.edu	36	9	115009362	115009362	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	115009362	115009362	T	C	SNP	FKBP15	NM_015258	human	genbank	54_36p	-1	validated	missense	c.205	p.M69V	0	superfamily_FKBP-like	"HMMPfam_FKBP_C,superfamily_FKBP-like"	-	no_errors
COL27A1	85301	genome.wustl.edu	36	9	116109854	116109854	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	116109854	116109854	G	T	SNP	COL27A1	NM_032888	human	genbank	54_36p	1	provisional	missense	c.5192	p.C1731F	1	"HMMSmart_SM00038,HMMPfam_COLFI"	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
AKNA	80709	genome.wustl.edu	36	9	116178437	116178437	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	116178437	116178437	C	G	SNP	AKNA	ENST00000394574	human	ensembl	54_36p	-1	known	missense	c.1471	p.G491R	0.75	NULL	NULL	-	no_errors
AKNA	80709	genome.wustl.edu	36	9	116179231	116179231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	116179231	116179231	G	C	SNP	AKNA	NM_030767	human	genbank	54_36p	-1	validated	missense	c.677	p.P226R	0.04	NULL	NULL	-	no_errors
AKNA	80709	genome.wustl.edu	36	9	116179491	116179491	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	116179491	116179491	C	T	SNP	AKNA	NM_030767	human	genbank	54_36p	-1	validated	silent	c.417	p.E139	0.12	NULL	NULL	-	no_errors
DFNB31	25861	genome.wustl.edu	36	9	116268469	116268469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	116268469	116268469	G	A	SNP	DFNB31	NM_015404	human	genbank	54_36p	-1	validated	missense	c.862	p.R288W	0.97	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
TNFSF8	944	genome.wustl.edu	36	9	116706094	116706094	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	116706094	116706094	C	T	SNP	TNFSF8	NM_001244	human	genbank	54_36p	-1	reviewed	missense	c.643	p.D215N	1	"superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF"	"superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF,PatternScan_TNF_1"	-	no_errors
TLR4	7099	genome.wustl.edu	36	9	119510687	119510687	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	119510687	119510687	G	T	SNP	TLR4	NM_138554	human	genbank	54_36p	1	reviewed	missense	c.119	p.C40F	1	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
TLR4	7099	genome.wustl.edu	36	9	119516667	119516667	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	119516667	119516667	G	A	SNP	TLR4	NM_138554	human	genbank	54_36p	1	reviewed	missense	c.2440	p.A814T	1	"HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain"	"HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like"	-	no_errors
LOC389787	389787	genome.wustl.edu	36	9	119884996	119884996	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	119884996	119884996	G	T	SNP	LOC389787	XM_001725747	human	genbank	54_36p	-1	model	missense	c.384	p.F128L	1	"HMMPfam_TCTP,superfamily_Mss4-like"	"HMMPfam_TCTP,superfamily_Mss4-like,PatternScan_TCTP_2"	-	no_errors
LOC442434	442434	genome.wustl.edu	36	9	120566038	120566038	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	120566038	120566038	G	C	SNP	LOC442434	XM_001718538	human	genbank	54_36p	1	model	missense	c.613	p.A205P	1	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
CDK5RAP2	55755	genome.wustl.edu	36	9	122273886	122273886	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	122273886	122273886	T	A	SNP	CDK5RAP2	NM_018249	human	genbank	54_36p	-1	reviewed	missense	c.1819	p.T607S	0.31	NULL	HMMPfam_Microtub_assoc	-	no_errors
TRAF1	7185	genome.wustl.edu	36	9	122713453	122713453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	122713453	122713453	C	T	SNP	TRAF1	NM_005658	human	genbank	54_36p	-1	reviewed	missense	c.865	p.V289I	0.02	"superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	"superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
C5	727	genome.wustl.edu	36	9	122819952	122819952	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	122819952	122819952	C	G	SNP	C5	NM_001735	human	genbank	54_36p	-1	reviewed	splice_site	c.1507-1	e13-1	1	-	-	-	no_errors
CEP110	11064	genome.wustl.edu	36	9	122971763	122971763	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	122971763	122971763	T	C	SNP	CEP110	NM_007018	human	genbank	54_36p	1	reviewed	silent	c.6124	p.L2042	0	NULL	"superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm"	-	no_errors
DAB2IP	153090	genome.wustl.edu	36	9	123561076	123561076	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	123561076	123561076	C	T	SNP	DAB2IP	NM_032552	human	genbank	54_36p	1	validated	nonsense	c.511	p.R171*	1	"HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1"	-	no_errors
MRRF	92399	genome.wustl.edu	36	9	124073039	124073039	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	124073039	124073039	C	T	SNP	MRRF	NM_138777	human	genbank	54_36p	1	validated	silent	c.48	p.R16	0.11	NULL	"superfamily_Ribosome recycling factor RRF,HMMPfam_RRF"	-	no_errors
PTGS1	5742	genome.wustl.edu	36	9	124180553	124180553	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	124180553	124180553	C	T	SNP	PTGS1	NM_000962	human	genbank	54_36p	1	reviewed	missense	c.232	p.R78W	0.84	superfamily_Heme-dependent peroxidases	"superfamily_EGF/Laminin,HMMPfam_EGF,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	-	no_errors
OR1N2	138882	genome.wustl.edu	36	9	124355406	124355406	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	124355406	124355406	G	C	SNP	OR1N2	NM_001004457	human	genbank	54_36p	1	provisional	missense	c.137	p.G46A	0.43	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR1Q1	158131	genome.wustl.edu	36	9	124417536	124417536	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	124417536	124417536	C	T	SNP	OR1Q1	NM_012364	human	genbank	54_36p	1	provisional	silent	c.699	p.G233	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR1L6	392390	genome.wustl.edu	36	9	124552709	124552709	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	124552709	124552709	G	A	SNP	OR1L6	NM_001004453	human	genbank	54_36p	1	provisional	silent	c.870	p.G290	0.82	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
RC3H2	54542	genome.wustl.edu	36	9	124662101	124662101	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	124662101	124662101	A	G	SNP	RC3H2	NM_001100588	human	genbank	54_36p	-1	validated	missense	c.1765	p.Y589H	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH"	-	no_errors
RABGAP1	23637	genome.wustl.edu	36	9	124786770	124786770	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	124786770	124786770	A	C	SNP	RABGAP1	NM_012197	human	genbank	54_36p	1	validated	silent	c.120	p.V40	1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
RABGAP1	23637	genome.wustl.edu	36	9	124791454	124791454	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	124791454	124791454	C	T	SNP	RABGAP1	NM_012197	human	genbank	54_36p	1	validated	silent	c.432	p.L144	1	"HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	-	no_errors
NR6A1	2649	genome.wustl.edu	36	9	126338213	126338213	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	126338213	126338213	C	A	SNP	NR6A1	NM_033334	human	genbank	54_36p	-1	reviewed	nonsense	c.844	p.E282*	1	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
RPL35	11224	genome.wustl.edu	36	9	126660108	126660108	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	126660108	126660108	C	T	SNP	RPL35	NM_007209	human	genbank	54_36p	-1	reviewed	silent	c.282	p.R94	1	NULL	"superfamily_Ribosomal_L29,HMMPfam_Ribosomal_L29,PatternScan_RIBOSOMAL_L29"	-	no_errors
SCAI	286205	genome.wustl.edu	36	9	126868126	126868126	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	126868126	126868126	T	A	SNP	C9orf126	NM_173690	human	genbank	54_36p	-1	validated	missense	c.131	p.Q44L	0.43	NULL	NULL	-	no_errors
RABEPK	10244	genome.wustl.edu	36	9	127035868	127035868	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	127035868	127035868	T	C	SNP	RABEPK	NM_005833	human	genbank	54_36p	1	provisional	missense	c.907	p.W303R	1	NULL	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMPfam_Kelch_1"	-	no_errors
HSPA5	3309	genome.wustl.edu	36	9	127040895	127040895	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	127040895	127040895	C	A	SNP	HSPA5	NM_005347	human	genbank	54_36p	-1	validated	missense	c.1029	p.Q343H	1	"HMMPfam_HSP70,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain"	-	no_errors
GAPVD1	26130	genome.wustl.edu	36	9	127123549	127123549	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	127123549	127123549	T	G	SNP	GAPVD1	NM_015635	human	genbank	54_36p	1	validated	missense	c.1619	p.L540R	1	NULL	"superfamily_Rho_GAP,HMMPfam_RasGAP,superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9"	-	no_errors
MAPKAP1	79109	genome.wustl.edu	36	9	127270182	127270182	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	127270182	127270182	T	C	SNP	MAPKAP1	NM_001006617	human	genbank	54_36p	-1	reviewed	missense	c.1235	p.D412G	1	HMMPfam_SIN1	"HMMPfam_SIN1,PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
ZBTB43	23099	genome.wustl.edu	36	9	128635971	128635971	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	128635971	128635971	C	T	SNP	ZBTB43	NM_014007	human	genbank	54_36p	1	validated	silent	c.1362	p.Y454	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
STXBP1	6812	genome.wustl.edu	36	9	129492950	129492950	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	129492950	129492950	G	A	SNP	STXBP1	NM_001032221	human	genbank	54_36p	1	provisional	missense	c.1778	p.S593N	1	NULL	"superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1"	-	no_errors
DNM1	1759	genome.wustl.edu	36	9	130048595	130048595	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	130048595	130048595	G	A	SNP	DNM1	NM_004408	human	genbank	54_36p	1	reviewed	silent	c.1773	p.T591	0.84	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302"	-	no_errors
DNM1	1759	genome.wustl.edu	36	9	130052309	130052309	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	130052309	130052309	G	A	SNP	DNM1	NM_004408	human	genbank	54_36p	1	reviewed	missense	c.2171	p.R724Q	1	"HMMPfam_GED,HMMSmart_SM00302"	"HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_SM00053,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302,PatternScan_DYNAMIN,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GOLGA2	2801	genome.wustl.edu	36	9	130062777	130062777	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	130062777	130062777	C	T	SNP	GOLGA2	NM_004486	human	genbank	54_36p	-1	reviewed	missense	c.1429	p.D477N	1	NULL	NULL	-	no_errors
ODF2	4957	genome.wustl.edu	36	9	130296789	130296789	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	130296789	130296789	G	T	SNP	ODF2	NM_153437	human	genbank	54_36p	1	reviewed	silent	c.1875	p.G625	1	NULL	NULL	-	no_errors
SPTAN1	6709	genome.wustl.edu	36	9	130389791	130389791	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	130389791	130389791	C	-	DEL	SPTAN1	NM_003127	human	genbank	54_36p	1	validated	frame_shift_del	c.2864	p.C956fs	1	"HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_SH3-domain"	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen"	"(deletion:cds_exon[130389706,130389798])"	no_errors
NUP188	23511	genome.wustl.edu	36	9	130770618	130770618	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	130770618	130770618	G	A	SNP	NUP188	NM_015354	human	genbank	54_36p	1	validated	missense	c.598	p.V200M	1	HMMPfam_Nup188	HMMPfam_Nup188	-	no_errors
MPDZ	8777	genome.wustl.edu	36	9	13109558	13109558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	13109558	13109558	C	G	SNP	MPDZ	NM_003829	human	genbank	54_36p	-1	validated	missense	c.5322	p.M1774I	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"HMMPfam_L27_2,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
ASS1	445	genome.wustl.edu	36	9	132366225	132366225	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	132366225	132366225	A	C	SNP	ASS1	NM_000050	human	genbank	54_36p	1	reviewed	missense	c.1235	p.K412T	1	NULL	"superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_Arginosuc_synth,PatternScan_ARGININOSUCCIN_SYN_1,PatternScan_ARGININOSUCCIN_SYN_2,superfamily_Argininosuccinate synthetase C-terminal domain"	-	no_errors
EXOSC2	23404	genome.wustl.edu	36	9	132568284	132568284	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	132568284	132568284	G	T	SNP	EXOSC2	NM_014285	human	genbank	54_36p	1	validated	missense	c.696	p.E232D	1	NULL	NULL	-	no_errors
LAMC3	10319	genome.wustl.edu	36	9	132932260	132932260	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	132932260	132932260	G	A	SNP	LAMC3	NM_006059	human	genbank	54_36p	1	reviewed	missense	c.2440	p.G814R	0.98	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196"	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Laminin_B,PatternScan_EGF_2"	-	no_errors
NUP214	8021	genome.wustl.edu	36	9	133040820	133040820	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	133040820	133040820	C	G	SNP	NUP214	NM_005085	human	genbank	54_36p	1	reviewed	missense	c.3310	p.Q1104E	0.93	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	-	no_errors
RAPGEF1	2889	genome.wustl.edu	36	9	133454022	133454022	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	133454022	133454022	C	A	SNP	RAPGEF1	NM_198679	human	genbank	54_36p	-1	reviewed	missense	c.2536	p.G846W	1	"superfamily_Ras_GEF,HMMSmart_RasGEFN"	"superfamily_Ras_GEF,HMMSmart_RasGEFN,HMMPfam_RasGEF_N,HMMSmart_RasGEF,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
SETX	23064	genome.wustl.edu	36	9	134192410	134192410	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	134192410	134192410	C	A	SNP	SETX	NM_015046	human	genbank	54_36p	-1	reviewed	missense	c.4396	p.G1466C	0	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SETX	23064	genome.wustl.edu	36	9	134211475	134211475	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	134211475	134211475	G	T	SNP	SETX	NM_015046	human	genbank	54_36p	-1	reviewed	missense	c.382	p.R128S	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TTF1	7270	genome.wustl.edu	36	9	134267311	134267311	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	134267311	134267311	G	C	SNP	TTF1	NM_007344	human	genbank	54_36p	-1	validated	missense	c.719	p.S240W	0	NULL	"HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	-	no_errors
RALGDS	5900	genome.wustl.edu	36	9	134975699	134975699	+	Splice_Site	SNP	T	C	C	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	134975699	134975699	T	C	SNP	RALGDS	NM_006266	human	genbank	54_36p	-1	validated	splice_site	c.295-2	e3-2	0.99	-	-	-	no_errors
ABO	28	genome.wustl.edu	36	9	135125043	135125043	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	135125043	135125043	C	T	SNP	ABO	ENST00000319878	human	ensembl	54_36p	-1	known	splice_site	c.203+1	e4+1	0.01	-	-	-	no_errors
DBH	1621	genome.wustl.edu	36	9	135497350	135497350	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	135497350	135497350	G	A	SNP	DBH	NM_000787	human	genbank	54_36p	1	reviewed	silent	c.687	p.T229	0.98	"superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen"	"HMMSmart_DoH,HMMPfam_DOMON,superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2"	-	no_errors
VAV2	7410	genome.wustl.edu	36	9	135646788	135646788	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	135646788	135646788	C	A	SNP	VAV2	NM_003371	human	genbank	54_36p	-1	reviewed	missense	c.1111	p.V371F	1	superfamily_DH-domain	###############################################################################################################################################################################################################################################################	-	no_errors
VAV2	7410	genome.wustl.edu	36	9	135716365	135716365	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	135716365	135716365	G	A	SNP	VAV2	NM_003371	human	genbank	54_36p	-1	reviewed	missense	c.332	p.A111V	0.98	"HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology"	###############################################################################################################################################################################################################################################################	-	no_errors
KIAA0649	9858	genome.wustl.edu	36	9	137519770	137519770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	137519770	137519770	C	T	SNP	KIAA0649	NM_014811	human	genbank	54_36p	1	validated	missense	c.3593	p.T1198M	0.53	NULL	NULL	-	no_errors
KCNT1	57582	genome.wustl.edu	36	9	137782674	137782674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	137782674	137782674	G	A	SNP	KCNT1	NM_020822	human	genbank	54_36p	1	provisional	missense	c.400	p.V134I	1	NULL	"superfamily_SSF81324,HMMPfam_Ion_trans_2,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a"	-	no_errors
QSOX2	169714	genome.wustl.edu	36	9	138243061	138243061	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	138243061	138243061	G	T	SNP	QSOX2	NM_181701	human	genbank	54_36p	-1	validated	missense	c.1419	p.F473L	1	"superfamily_Evr1_Alr,HMMPfam_Evr1_Alr"	"superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,superfamily_Evr1_Alr,HMMPfam_Evr1_Alr"	-	no_errors
KIAA1984	84960	genome.wustl.edu	36	9	138816969	138816969	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	138816969	138816969	G	C	SNP	KIAA1984	NM_001039374	human	genbank	54_36p	1	validated	missense	c.576	p.K192N	1	NULL	NULL	-	no_errors
TRAF2	7186	genome.wustl.edu	36	9	138934630	138934630	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	138934630	138934630	C	T	SNP	TRAF2	NM_021138	human	genbank	54_36p	1	reviewed	missense	c.802	p.L268F	0.42	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,HMMPfam_zf-TRAF,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
UAP1L1	91373	genome.wustl.edu	36	9	139096287	139096287	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	139096287	139096287	G	A	SNP	UAP1L1	NM_207309	human	genbank	54_36p	1	validated	missense	c.1012	p.D338N	0.95	"HMMPfam_UDPGP,superfamily_SSF53448"	"HMMPfam_UDPGP,superfamily_SSF53448"	-	no_errors
ENSG00000159247	0	genome.wustl.edu	36	9	140190899	140190899	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	140190899	140190899	A	G	SNP	ENSG00000159247	ENST00000290377	human	ensembl	54_36p	1	known	missense	c.697	p.M233V	1	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin"	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_start_codon
FREM1	158326	genome.wustl.edu	36	9	14740192	14740192	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	14740192	14740192	G	C	SNP	FREM1	NM_144966	human	genbank	54_36p	-1	validated	missense	c.5490	p.N1830K	1	NULL	"superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	-	no_errors
FREM1	158326	genome.wustl.edu	36	9	14838670	14838670	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	14838670	14838670	C	A	SNP	FREM1	NM_144966	human	genbank	54_36p	-1	validated	missense	c.1254	p.W418C	1	NULL	"HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Cadherin-like,superfamily_C-type lectin-like,PatternScan_SPASE_I_1"	-	no_errors
TTC39B	158219	genome.wustl.edu	36	9	15204172	15204172	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	15204172	15204172	G	T	SNP	TTC39B	NM_152574	human	genbank	54_36p	-1	provisional	missense	c.249	p.N83K	1	HMMPfam_Deme6	"HMMPfam_Deme6,superfamily_TPR-like,HMMSmart_SM00028"	-	no_errors
BNC2	54796	genome.wustl.edu	36	9	16427047	16427047	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	16427047	16427047	G	C	SNP	BNC2	NM_017637	human	genbank	54_36p	-1	validated	missense	c.1145	p.P382R	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
BNC2	54796	genome.wustl.edu	36	9	16427049	16427049	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	16427049	16427049	T	C	SNP	BNC2	NM_017637	human	genbank	54_36p	-1	validated	silent	c.1143	p.T381	0.92	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ADAMTSL1	92949	genome.wustl.edu	36	9	18612344	18612344	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	18612344	18612344	A	C	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	1	validated	missense	c.578	p.K193T	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC"	-	no_errors
PLIN2	123	genome.wustl.edu	36	9	19106373	19106373	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	19106373	19106373	G	T	SNP	ADFP	NM_001122	human	genbank	54_36p	-1	reviewed	missense	c.1187	p.T396K	1	"HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain"	"HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain"	-	no_errors
RPS6	6194	genome.wustl.edu	36	9	19369608	19369610	+	In_Frame_Del	DEL	GAT	GAT	-	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	GAT	GAT	GAT	-	GAT	GAT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	19369608	19369610	GAT	-	DEL	RPS6	NM_001010	human	genbank	54_36p	-1	reviewed	in_frame_del	c.15_13	p.I5in_frame_del	1.000:1.000:1.000	HMMPfam_Ribosomal_S6e	"HMMPfam_Ribosomal_S6e,PatternScan_RIBOSOMAL_S6E"	"(deletion:cds_exon[19369485,19369616])"	no_errors
SLC24A2	25769	genome.wustl.edu	36	9	19518072	19518072	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	19518072	19518072	T	G	SNP	SLC24A2	NM_020344	human	genbank	54_36p	-1	provisional	missense	c.1544	p.Y515S	1	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
SLC24A2	25769	genome.wustl.edu	36	9	19540152	19540152	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	19540152	19540152	G	T	SNP	SLC24A2	NM_020344	human	genbank	54_36p	-1	provisional	missense	c.1462	p.P488T	1	NULL	HMMPfam_Na_Ca_ex	-	no_errors
MLLT3	4300	genome.wustl.edu	36	9	20404188	20404188	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	20404188	20404188	T	C	SNP	MLLT3	NM_004529	human	genbank	54_36p	-1	validated	missense	c.656	p.K219R	1	NULL	HMMPfam_YEATS	-	no_errors
KIAA1797	54914	genome.wustl.edu	36	9	20705367	20705367	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	20705367	20705367	C	A	SNP	KIAA1797	NM_017794	human	genbank	54_36p	1	validated	silent	c.15	p.I5	1	NULL	superfamily_ARM-type_fold	-	no_errors
KIAA1797	54914	genome.wustl.edu	36	9	20871926	20871926	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	20871926	20871926	G	T	SNP	KIAA1797	NM_017794	human	genbank	54_36p	1	validated	missense	c.2374	p.G792W	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
IFNB1	3456	genome.wustl.edu	36	9	21067536	21067536	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	21067536	21067536	A	T	SNP	IFNB1	NM_002176	human	genbank	54_36p	-1	validated	missense	c.333	p.N111K	0	"HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076"	"HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D"	-	no_errors
IFNA17	3451	genome.wustl.edu	36	9	21217987	21217987	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	21217987	21217987	G	A	SNP	IFNA17	NM_021268	human	genbank	54_36p	-1	provisional	silent	c.186	p.P62	0	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd"	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D"	-	no_errors
IFNA5	3442	genome.wustl.edu	36	9	21294927	21294927	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	21294927	21294927	G	C	SNP	IFNA5	NM_002169	human	genbank	54_36p	-1	provisional	missense	c.329	p.T110S	0	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd"	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D"	-	no_errors
KLHL9	55958	genome.wustl.edu	36	9	21323117	21323117	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	21323117	21323117	G	A	SNP	KLHL9	NM_018847	human	genbank	54_36p	-1	validated	missense	c.1742	p.P581L	1	"HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
IFNA1	3439	genome.wustl.edu	36	9	21430580	21430580	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	21430580	21430580	A	G	SNP	IFNA1	NM_024013	human	genbank	54_36p	1	provisional	missense	c.74	p.D25G	0	"HMMPfam_Interferon,superfamily_4_helix_cytokine"	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D"	-	no_errors
IFNA1	3439	genome.wustl.edu	36	9	21430948	21430948	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	21430948	21430948	C	G	SNP	IFNA1	NM_024013	human	genbank	54_36p	1	provisional	missense	c.442	p.R148G	0.51	"HMMPfam_Interferon,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D,superfamily_4_helix_cytokine"	"HMMPfam_Interferon,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D,superfamily_4_helix_cytokine"	-	no_errors
TEK	7010	genome.wustl.edu	36	9	27207734	27207734	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	27207734	27207734	G	T	SNP	TEK	NM_000459	human	genbank	54_36p	1	reviewed	missense	c.3040	p.V1014L	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	###############################################################################################################################################################################################################################################################	-	no_errors
KIAA0020	9933	genome.wustl.edu	36	9	2821319	2821319	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	2821319	2821319	C	G	SNP	KIAA0020	NM_014878	human	genbank	54_36p	-1	validated	missense	c.542	p.R181P	0.99	"superfamily_ARM repeat,HMMSmart_SM00025"	"superfamily_ARM repeat,HMMSmart_SM00025,HMMPfam_CPL"	-	no_errors
TOPORS	10210	genome.wustl.edu	36	9	32534141	32534141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	32534141	32534141	C	T	SNP	TOPORS	NM_005802	human	genbank	54_36p	-1	validated	missense	c.382	p.V128I	1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
APTX	54840	genome.wustl.edu	36	9	32979805	32979805	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	32979805	32979805	G	A	SNP	APTX	NM_175073	human	genbank	54_36p	-1	reviewed	missense	c.85	p.R29C	1	superfamily_SMAD/FHA domain	"superfamily_SMAD/FHA domain,superfamily_HIT-like,HMMPfam_HIT,PatternScan_HIT_1,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
BAG1	573	genome.wustl.edu	36	9	33245264	33245264	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	33245264	33245264	G	A	SNP	BAG1	NM_004323	human	genbank	54_36p	-1	reviewed	nonsense	c.991	p.Q331*	1	superfamily_BAG domain	"superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,superfamily_BAG domain,HMMPfam_BAG,HMMSmart_SM00264"	-	no_errors
CHMP5	51510	genome.wustl.edu	36	9	33257862	33257862	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	33257862	33257862	G	A	SNP	CHMP5	NM_016410	human	genbank	54_36p	1	validated	silent	c.186	p.K62	0.99	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors
NOL6	65083	genome.wustl.edu	36	9	33456931	33456931	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	33456931	33456931	T	C	SNP	NOL6	NM_022917	human	genbank	54_36p	-1	reviewed	silent	c.1929	p.A643	0	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
UBAP2	55833	genome.wustl.edu	36	9	33925776	33925776	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	33925776	33925776	A	G	SNP	UBAP2	ENST00000379225	human	ensembl	54_36p	-1	known	missense	c.929	p.I310T	0	NULL	NULL	-	no_errors
UBAP2	55833	genome.wustl.edu	36	9	33943309	33943309	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	33943309	33943309	C	T	SNP	UBAP2	NM_018449	human	genbank	54_36p	-1	reviewed	missense	c.1030	p.V344I	1	NULL	"HMMPfam_UBA,HMMSmart_UBA"	-	no_errors
UBAP2	55833	genome.wustl.edu	36	9	33976812	33976812	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	33976812	33976812	C	G	SNP	UBAP2	NM_018449	human	genbank	54_36p	-1	reviewed	missense	c.466	p.D156H	1	NULL	"HMMPfam_UBA,HMMSmart_UBA"	-	no_errors
KIF24	347240	genome.wustl.edu	36	9	34245784	34245784	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	34245784	34245784	C	T	SNP	KIF24	NM_194313	human	genbank	54_36p	-1	validated	missense	c.3821	p.C1274Y	0.9	NULL	"HMMPfam_SAM_1,superfamily_SAM/Pointed domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
C9orf24	84688	genome.wustl.edu	36	9	34372763	34372763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	34372763	34372763	G	A	SNP	C9orf24	NM_032596	human	genbank	54_36p	-1	reviewed	missense	c.385	p.R129W	0.36	NULL	NULL	-	no_errors
PIGO	84720	genome.wustl.edu	36	9	35081323	35081323	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35081323	35081323	C	T	SNP	PIGO	NM_032634	human	genbank	54_36p	-1	reviewed	missense	c.2561	p.R854H	1	NULL	"superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest"	-	no_errors
UNC13B	10497	genome.wustl.edu	36	9	35393794	35393794	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35393794	35393794	G	A	SNP	UNC13B	NM_006377	human	genbank	54_36p	1	reviewed	missense	c.4540	p.V1514M	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD"	-	no_errors
TESK1	7016	genome.wustl.edu	36	9	35596922	35596922	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35596922	35596922	C	G	SNP	TESK1	NM_006285	human	genbank	54_36p	1	reviewed	missense	c.479	p.A160G	1	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
CA9	768	genome.wustl.edu	36	9	35664151	35664151	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35664151	35664151	G	A	SNP	CA9	NM_001216	human	genbank	54_36p	1	reviewed	silent	c.195	p.L65	0.46	NULL	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
CA9	768	genome.wustl.edu	36	9	35666372	35666372	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35666372	35666372	G	A	SNP	CA9	NM_001216	human	genbank	54_36p	1	reviewed	missense	c.826	p.A276T	1	"HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd"	"HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1"	-	no_errors
GBA2	57704	genome.wustl.edu	36	9	35728807	35728807	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35728807	35728807	C	T	SNP	GBA2	NM_020944	human	genbank	54_36p	-1	reviewed	missense	c.1889	p.R630Q	1	"superfamily_Six-hairpin glycosidases,HMMPfam_DUF608"	"PatternScan_HMG_COA_REDUCTASE_2,superfamily_Six-hairpin glycosidases,HMMPfam_DUF608"	-	no_errors
GBA2	57704	genome.wustl.edu	36	9	35730010	35730010	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35730010	35730010	G	A	SNP	GBA2	NM_020944	human	genbank	54_36p	-1	reviewed	missense	c.1394	p.P465L	0.99	superfamily_Six-hairpin glycosidases	"PatternScan_HMG_COA_REDUCTASE_2,HMMPfam_DUF608,superfamily_Six-hairpin glycosidases"	-	no_errors
NPR2	4882	genome.wustl.edu	36	9	35795826	35795826	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35795826	35795826	G	C	SNP	NPR2	NM_003995	human	genbank	54_36p	1	reviewed	splice_site	c.2048-1	e14-1	1	-	-	-	no_errors
NPR2	4882	genome.wustl.edu	36	9	35798671	35798671	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	35798671	35798671	G	T	SNP	NPR2	NM_003995	human	genbank	54_36p	1	reviewed	missense	c.2878	p.V960F	0.99	"HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc"	###############################################################################################################################################################################################################################################################	-	no_errors
OR2S2	56656	genome.wustl.edu	36	9	35947870	35947870	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	35947870	35947870	T	C	SNP	OR2S2	NM_019897	human	genbank	54_36p	-1	provisional	missense	c.196	p.T66A	0.15	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
DOCK8	81704	genome.wustl.edu	36	9	362251	362251	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	362251	362251	A	T	SNP	DOCK8	NM_203447	human	genbank	54_36p	1	validated	nonsense	c.1870	p.K624*	1	NULL	HMMPfam_Ded_cyto	-	no_errors
MELK	9833	genome.wustl.edu	36	9	36641858	36641858	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	36641858	36641858	C	T	SNP	MELK	NM_014791	human	genbank	54_36p	1	provisional	missense	c.1037	p.P346L	0.02	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF103243,HMMPfam_KA1"	-	no_errors
MELK	9833	genome.wustl.edu	36	9	36661029	36661029	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	36661029	36661029	C	T	SNP	MELK	NM_014791	human	genbank	54_36p	1	provisional	missense	c.1540	p.H514Y	1	NULL	"HMMPfam_KA1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF103243"	-	no_errors
ZCCHC7	84186	genome.wustl.edu	36	9	37294239	37294239	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	37294239	37294239	G	C	SNP	ZCCHC7	NM_032226	human	genbank	54_36p	1	validated	missense	c.709	p.A237P	0.78	superfamily_Retrovirus zinc finger-like domains	"superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
ZBTB5	9925	genome.wustl.edu	36	9	37432187	37432187	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	37432187	37432187	G	T	SNP	ZBTB5	NM_014872	human	genbank	54_36p	-1	validated	missense	c.362	p.T121K	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
FRMPD1	22844	genome.wustl.edu	36	9	37734774	37734774	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	37734774	37734774	C	T	SNP	FRMPD1	NM_014907	human	genbank	54_36p	1	provisional	silent	c.2745	p.N915	0	NULL	"PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	-	no_errors
MCART1	92014	genome.wustl.edu	36	9	37877988	37877988	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	37877988	37877988	T	A	SNP	MCART1	NM_033412	human	genbank	54_36p	-1	validated	missense	c.560	p.N187I	1	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	-	no_errors
GLIS3	169792	genome.wustl.edu	36	9	3846099	3846099	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	3846099	3846099	G	C	SNP	GLIS3	NM_001042413	human	genbank	54_36p	-1	reviewed	missense	c.2383	p.P795A	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
CNTNAP3	79937	genome.wustl.edu	36	9	39076820	39076820	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	39076820	39076820	C	G	SNP	CNTNAP3	NM_033655	human	genbank	54_36p	-1	reviewed	missense	c.3247	p.D1083H	0.88	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
FAM75A3	727830	genome.wustl.edu	36	9	40694394	40694394	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9	40694394	40694394	G	A	SNP	FAM75A3	NM_001083124	human	genbank	54_36p	1	predicted	missense	c.2051	p.R684K	0	NULL	NULL	-	no_errors
FAM75A3	727830	genome.wustl.edu	36	9	40695599	40695599	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	40695599	40695599	G	A	SNP	FAM75A3	NM_001083124	human	genbank	54_36p	1	predicted	missense	c.3256	p.E1086K	0	NULL	NULL	-	no_errors
ZNF658	26149	genome.wustl.edu	36	9	40763337	40763337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	40763337	40763337	C	T	SNP	ZNF658	NM_033160	human	genbank	54_36p	-1	validated	silent	c.1938	p.K646	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF658	26149	genome.wustl.edu	36	9	40763969	40763969	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	40763969	40763969	C	T	SNP	ZNF658	NM_033160	human	genbank	54_36p	-1	validated	missense	c.1306	p.G436R	0.05	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
DOCK8	81704	genome.wustl.edu	36	9	408118	408118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	408118	408118	G	C	SNP	DOCK8	NM_203447	human	genbank	54_36p	1	validated	missense	c.3547	p.G1183R	0.38	NULL	HMMPfam_Ded_cyto	-	no_errors
LOC441416	441416	genome.wustl.edu	36	9	44114369	44114369	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	44114369	44114369	G	T	SNP	LOC441416	XR_016304	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
WASH1	100287171	genome.wustl.edu	36	9	4863	4863	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9	4863	4863	A	G	SNP	WASH1	NM_182905	human	genbank	54_36p	-1	validated	silent	c.739	p.L247	1	NULL	NULL	-	no_errors
C9orf46	55848	genome.wustl.edu	36	9	5351832	5351832	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	5351832	5351832	C	G	SNP	C9orf46	NM_018465	human	genbank	54_36p	-1	predicted	missense	c.138	p.Q46H	1	HMMPfam_DUF2368	HMMPfam_DUF2368	-	no_errors
KIAA2026	158358	genome.wustl.edu	36	9	5959314	5959314	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	5959314	5959314	G	C	SNP	KIAA2026	NM_001017969	human	genbank	54_36p	-1	validated	missense	c.917	p.A306G	1	NULL	superfamily_Bromodomain	-	no_errors
RANBP6	26953	genome.wustl.edu	36	9	6004609	6004609	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	6004609	6004609	A	G	SNP	RANBP6	NM_012416	human	genbank	54_36p	-1	validated	silent	c.999	p.D333	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_HEAT"	-	no_errors
RANBP6	26953	genome.wustl.edu	36	9	6005291	6005291	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	6005291	6005291	T	C	SNP	RANBP6	NM_012416	human	genbank	54_36p	-1	validated	missense	c.317	p.K106R	1	superfamily_ARM-type_fold	"HMMPfam_HEAT,superfamily_ARM-type_fold"	-	no_errors
GLDC	2731	genome.wustl.edu	36	9	6579283	6579283	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	6579283	6579283	C	G	SNP	GLDC	NM_000170	human	genbank	54_36p	-1	validated	missense	c.1492	p.A498P	1	NULL	"HMMPfam_GDC-P,superfamily_PyrdxlP-dep_Trfase_major"	-	no_errors
AQP7P1	375719	genome.wustl.edu	36	9	66963040	66963040	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	66963040	66963040	G	T	SNP	AQP7P1	ENST00000334576	human	ensembl	54_36p	-1	known	missense	c.432	p.H144Q	0.03	"HMMPfam_MIP,superfamily_Aquaporin-like"	"HMMPfam_MIP,superfamily_Aquaporin-like"	-	no_errors
PGM5	5239	genome.wustl.edu	36	9	70269854	70269854	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	70269854	70269854	G	T	SNP	PGM5	NM_021965	human	genbank	54_36p	1	validated	missense	c.1069	p.V357L	1	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_III"	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS,HMMPfam_PGM_PMM_II,HMMPfam_PGM_PMM_III,superfamily_Phosphoglucomutase C-terminal domain,HMMPfam_PGM_PMM_IV"	-	no_errors
C9orf135	138255	genome.wustl.edu	36	9	71625735	71625735	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	71625735	71625735	G	A	SNP	C9orf135	NM_001010940	human	genbank	54_36p	1	validated	silent	c.120	p.K40	1	NULL	NULL	-	no_errors
GDA	9615	genome.wustl.edu	36	9	74049916	74049916	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	74049916	74049916	G	A	SNP	GDA	NM_004293	human	genbank	54_36p	1	validated	missense	c.1168	p.E390K	1	HMMPfam_Amidohydro_1	"HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases"	-	no_errors
LOC158345	158345	genome.wustl.edu	36	9	7467699	7467699	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	7467699	7467699	A	T	SNP	LOC158345	XR_017130	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
ALDH1A1	216	genome.wustl.edu	36	9	74716766	74716766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	74716766	74716766	C	T	SNP	ALDH1A1	NM_000689	human	genbank	54_36p	-1	reviewed	silent	c.1128	p.G376	0.99	"superfamily_ALDH-like,HMMPfam_Aldedh"	"superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
ALDH1A1	216	genome.wustl.edu	36	9	74721788	74721788	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	74721788	74721788	C	T	SNP	ALDH1A1	ENST00000376939	human	ensembl	54_36p	-1	known	missense	c.683	p.S228N	0.98	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh"	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh"	-	no_errors
ALDH1A1	216	genome.wustl.edu	36	9	74733749	74733749	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	74733749	74733749	C	T	SNP	ALDH1A1	NM_000689	human	genbank	54_36p	-1	reviewed	silent	c.321	p.E107	0.98	"HMMPfam_Aldedh,superfamily_ALDH-like"	"HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like"	-	no_errors
RORB	6096	genome.wustl.edu	36	9	76447315	76447315	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	76447315	76447315	A	G	SNP	RORB	NM_006914	human	genbank	54_36p	1	reviewed	missense	c.401	p.N134S	1	NULL	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
PCSK5	5125	genome.wustl.edu	36	9	77993897	77993897	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	77993897	77993897	G	T	SNP	PCSK5	NM_006200	human	genbank	54_36p	1	reviewed	missense	c.2448	p.Q816H	1	"superfamily_Growth factor receptor domain,HMMSmart_SM00261"	###############################################################################################################################################################################################################################################################	-	no_errors
GNA14	9630	genome.wustl.edu	36	9	79239201	79239201	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	79239201	79239201	C	A	SNP	GNA14	NM_004297	human	genbank	54_36p	-1	reviewed	nonsense	c.367	p.E123*	0.98	"HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	"HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	-	no_errors
KRT18P24	340460	genome.wustl.edu	36	9	80841793	80841793	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	80841793	80841793	T	C	SNP	KRT18P24	XR_016865	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
TLE4	7091	genome.wustl.edu	36	9	81509548	81509548	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	81509548	81509548	C	T	SNP	TLE4	NM_007005	human	genbank	54_36p	1	validated	nonsense	c.640	p.R214*	1	NULL	"HMMPfam_TLE_N,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ENSG00000204562	0	genome.wustl.edu	36	9	83722917	83722917	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	83722917	83722917	A	C	SNP	ENSG00000204562	ENST00000376459	human	ensembl	54_36p	1	known	silent	c.790	p.R264	0	NULL	NULL	-	no_errors
FAM75D1	389763	genome.wustl.edu	36	9	83799423	83799423	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	83799423	83799423	G	A	SNP	FLJ46321	NM_001001670	human	genbank	54_36p	1	validated	silent	c.4218	p.R1406	0	NULL	NULL	-	no_errors
SLC28A3	64078	genome.wustl.edu	36	9	86090263	86090263	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	86090263	86090263	G	A	SNP	SLC28A3	NM_022127	human	genbank	54_36p	-1	provisional	silent	c.1464	p.Y488	1	HMMPfam_Nucleos_tra2_C	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
NTRK2	4915	genome.wustl.edu	36	9	86760151	86760151	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	86760151	86760151	C	T	SNP	NTRK2	NM_006180	human	genbank	54_36p	1	reviewed	missense	c.2071	p.R691C	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR"	###############################################################################################################################################################################################################################################################	-	no_errors
AGTPBP1	23287	genome.wustl.edu	36	9	87390234	87390234	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	87390234	87390234	T	A	SNP	AGTPBP1	NM_015239	human	genbank	54_36p	-1	validated	silent	c.3009	p.A1003	0	"superfamily_SSF53187,HMMPfam_Peptidase_M14"	"superfamily_ARM-type_fold,superfamily_SSF53187,HMMPfam_Peptidase_M14"	-	no_errors
AGTPBP1	23287	genome.wustl.edu	36	9	87477343	87477343	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	87477343	87477343	C	T	SNP	AGTPBP1	NM_015239	human	genbank	54_36p	-1	validated	silent	c.510	p.L170	1	superfamily_ARM-type_fold	"HMMPfam_Peptidase_M14,superfamily_ARM-type_fold,superfamily_SSF53187"	-	no_errors
AGTPBP1	23287	genome.wustl.edu	36	9	87497523	87497523	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	87497523	87497523	C	T	SNP	AGTPBP1	NM_015239	human	genbank	54_36p	-1	validated	missense	c.58	p.G20R	1	superfamily_ARM-type_fold	"HMMPfam_Peptidase_M14,superfamily_ARM-type_fold,superfamily_SSF53187"	-	no_errors
NAA35	60560	genome.wustl.edu	36	9	87746931	87746931	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	87746931	87746931	G	-	DEL	MAK10	NM_024635	human	genbank	54_36p	1	validated	frame_shift_del	c.37	p.G13fs	1	NULL	HMMPfam_Mak10	"(deletion:cds_exon[87746895,87747018])"	no_errors
ZCCHC6	79670	genome.wustl.edu	36	9	88127785	88127785	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	88127785	88127785	G	T	SNP	ZCCHC6	NM_024617	human	genbank	54_36p	-1	validated	silent	c.2700	p.G900	0	NULL	"HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2,superfamily_Retrovirus zinc finger-like domains"	-	no_errors
DAPK1	1612	genome.wustl.edu	36	9	89501872	89501872	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	9	89501872	89501872	C	T	SNP	DAPK1	NM_004938	human	genbank	54_36p	1	reviewed	silent	c.2544	p.I848	1	superfamily_SSF52540	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF52540,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
C9orf79	286234	genome.wustl.edu	36	9	89690173	89690173	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	89690173	89690173	C	A	SNP	C9orf79	NM_178828	human	genbank	54_36p	1	validated	silent	c.951	p.G317	0	NULL	NULL	-	no_errors
C9orf79	286234	genome.wustl.edu	36	9	89692843	89692843	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	89692843	89692843	C	T	SNP	C9orf79	NM_178828	human	genbank	54_36p	1	validated	silent	c.3621	p.H1207	0	NULL	NULL	-	no_errors
LOC645937	645937	genome.wustl.edu	36	9	89749051	89749051	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	89749051	89749051	G	A	SNP	LOC645937	XM_928905	human	genbank	54_36p	-1	model	silent	c.627	p.D209	0.93	NULL	NULL	-	no_errors
RPS10P3	158104	genome.wustl.edu	36	9	89821169	89821169	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	89821169	89821169	C	A	SNP	RPS10P3	XR_016556	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC401537	401537	genome.wustl.edu	36	9	90129592	90129592	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	9	90129592	90129592	C	T	SNP	LOC401537	XR_017028	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
S1PR3	1903	genome.wustl.edu	36	9	90806867	90806867	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	90806867	90806867	G	T	SNP	S1PR3	NM_005226	human	genbank	54_36p	1	reviewed	missense	c.932	p.R311L	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SECISBP2	79048	genome.wustl.edu	36	9	91133588	91133588	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	91133588	91133588	A	G	SNP	SECISBP2	NM_024077	human	genbank	54_36p	1	reviewed	silent	c.768	p.R256	0.17	NULL	"superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae"	-	no_errors
SEMA4D	10507	genome.wustl.edu	36	9	91193779	91193779	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	9	91193779	91193779	C	T	SNP	SEMA4D	NM_006378	human	genbank	54_36p	-1	validated	missense	c.778	p.D260N	1	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
ROR2	4920	genome.wustl.edu	36	9	93527050	93527050	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	93527050	93527050	G	A	SNP	ROR2	NM_004560	human	genbank	54_36p	-1	reviewed	missense	c.1547	p.P516L	0.01	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_Fz,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
IARS	3376	genome.wustl.edu	36	9	94052860	94052860	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	94052860	94052860	G	C	SNP	IARS	NM_002161	human	genbank	54_36p	-1	reviewed	missense	c.2385	p.D795E	1	"superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1"	"superfamily_SSF52374,HMMPfam_tRNA-synt_1,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS_IleRS_edit,superfamily_tRNAsyn_1a_bind,HMMPfam_Anticodon_1"	-	no_errors
OMD	4958	genome.wustl.edu	36	9	94218967	94218967	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	94218967	94218967	G	T	SNP	OMD	NM_005014	human	genbank	54_36p	-1	validated	missense	c.695	p.P232H	1	"superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00364"	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
IPPK	64768	genome.wustl.edu	36	9	94440220	94440220	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	94440220	94440220	C	T	SNP	IPPK	NM_022755	human	genbank	54_36p	-1	validated	missense	c.800	p.R267Q	0.06	HMMPfam_Ins_P5_2-kin	HMMPfam_Ins_P5_2-kin	-	no_errors
IPPK	64768	genome.wustl.edu	36	9	94440330	94440330	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	94440330	94440330	C	G	SNP	IPPK	NM_022755	human	genbank	54_36p	-1	validated	missense	c.690	p.W230C	0.89	HMMPfam_Ins_P5_2-kin	HMMPfam_Ins_P5_2-kin	-	no_errors
C9orf129	445577	genome.wustl.edu	36	9	95120651	95120651	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	95120651	95120651	T	A	SNP	C9orf129	NM_001098808	human	genbank	54_36p	-1	predicted	silent	c.441	p.A147	0	NULL	NULL	-	no_errors
ZNF169	169841	genome.wustl.edu	36	9	96102338	96102338	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	96102338	96102338	G	C	SNP	ZNF169	NM_194320	human	genbank	54_36p	1	validated	missense	c.677	p.S226T	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HIATL1	84641	genome.wustl.edu	36	9	96240563	96240563	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	96240563	96240563	G	A	SNP	HIATL1	NM_032558	human	genbank	54_36p	1	validated	silent	c.327	p.R109	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
FANCC	2176	genome.wustl.edu	36	9	97042810	97042810	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	97042810	97042810	C	A	SNP	FANCC	NM_000136	human	genbank	54_36p	-1	reviewed	missense	c.287	p.C96F	1	HMMPfam_Fanconi_C	HMMPfam_Fanconi_C	-	no_errors
PTCH1	5727	genome.wustl.edu	36	9	97260321	97260321	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	97260321	97260321	A	T	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	missense	c.2963	p.V988E	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
PTCH1	5727	genome.wustl.edu	36	9	97279733	97279733	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	97279733	97279733	C	T	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	missense	c.1420	p.V474I	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
PTCH1	5727	genome.wustl.edu	36	9	97318809	97318809	+	Missense_Mutation	SNP	C	G	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	G	C	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	9	97318809	97318809	C	G	SNP	PTCH1	NM_001083603	human	genbank	54_36p	-1	reviewed	missense	c.115	p.D39H	0.97	NULL	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
DMRT3	58524	genome.wustl.edu	36	9	980732	980732	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	980732	980732	C	A	SNP	DMRT3	NM_021240	human	genbank	54_36p	1	validated	missense	c.1146	p.S382R	1	NULL	"superfamily_DM_DNA_bd,HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,HMMPfam_DMA"	-	no_errors
CDC14B	8555	genome.wustl.edu	36	9	98305889	98305889	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	98305889	98305889	G	A	SNP	CDC14B	NM_033331	human	genbank	54_36p	-1	reviewed	silent	c.1464	p.L488	1	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMSmart_SM00404,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
C9orf174	100499483	genome.wustl.edu	36	9	99125025	99125025	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	99125025	99125025	G	C	SNP	KIAA1529	NM_020893	human	genbank	54_36p	1	predicted	splice_site	c.1797+1	e15+1	1	-	-	-	no_errors
C9orf174	100499483	genome.wustl.edu	36	9	99132707	99132707	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	99132707	99132707	T	G	SNP	KIAA1529	NM_020893	human	genbank	54_36p	1	predicted	nonsense	c.2660	p.L887*	0	NULL	NULL	-	no_errors
TDRD7	23424	genome.wustl.edu	36	9	99277564	99277564	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	99277564	99277564	C	T	SNP	TDRD7	NM_014290	human	genbank	54_36p	1	validated	nonsense	c.2158	p.R720*	0.88	"HMMPfam_TUDOR,superfamily_SSF63748,HMMSmart_TUDOR"	"HMMPfam_TUDOR,superfamily_SSF63748,HMMSmart_TUDOR"	-	no_errors
TSTD2	158427	genome.wustl.edu	36	9	99408281	99408281	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	99408281	99408281	G	T	SNP	C9orf97	NM_139246	human	genbank	54_36p	-1	validated	missense	c.919	p.L307I	1	"superfamily_Rhodanese/Cell cycle control phosphatase,HMMPfam_Rhodanese,HMMSmart_SM00450"	"superfamily_Rhodanese/Cell cycle control phosphatase,HMMPfam_Rhodanese,HMMSmart_SM00450"	-	no_errors
KRT18P13	392371	genome.wustl.edu	36	9	99501544	99501544	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	99501544	99501544	C	T	SNP	KRT18P13	XM_001726959	human	genbank	54_36p	1	model	missense	c.583	p.R195C	1	HMMPfam_Filament	HMMPfam_Filament	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
HEMGN	55363	genome.wustl.edu	36	9	99733038	99733038	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	99733038	99733038	C	A	SNP	HEMGN	NM_018437	human	genbank	54_36p	-1	validated	missense	c.460	p.A154S	0.01	NULL	NULL	-	no_errors
ENSG00000189002	0	genome.wustl.edu	36	3	90337887	90337887	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	90337887	90337887	C	A	SNP	ENSG00000189002	ENST00000340162	human	ensembl	54_36p	-1	known	missense	c.7	p.A3S	0.02	superfamily_ConA_like_lec_gl	superfamily_ConA_like_lec_gl	-	no_errors
ENSG00000162685	0	genome.wustl.edu	36	2	91207257	91207257	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	91207257	91207257	T	G	SNP	ENSG00000162685	ENST00000294715	human	ensembl	54_36p	-1	known	splice_site	c.1-2	e1-2	0	-	-	-	no_start_codon:no_stop_codon
LOC100132553	100132553	genome.wustl.edu	36	8	92239546	92239546	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	92239546	92239546	A	T	SNP	LOC100132553	XR_038881	human	genbank	54_36p	1	model	rna	NULL	NULL	0.92	-	-	-	pseudogene
MIR489	574442	genome.wustl.edu	36	7	92951240	92951240	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	92951240	92951240	G	A	SNP	MIRN489	ENST00000384923	human	ensembl	54_36p	-1	known	rna	NULL	NULL	1	-	-	-	no_errors
SCARNA9	619383	genome.wustl.edu	36	11	93094641	93094641	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93094641	93094641	C	G	SNP	SCARNA9	NR_002569	human	genbank	54_36p	1	provisional	rna	NULL	NULL	0.01	-	-	-	no_errors
ENSG00000197004	0	genome.wustl.edu	36	4	9365900	9365900	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	9365900	9365900	T	A	SNP	ENSG00000197004	ENST00000355821	human	ensembl	54_36p	1	novel	silent	c.207	p.S69	0.26	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
FOLR4	390243	genome.wustl.edu	36	11	93680014	93680014	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	93680014	93680014	T	A	SNP	FOLR4	NM_001080486	human	genbank	54_36p	1	inferred	missense	c.363	p.N121K	0.25	HMMPfam_Folate_rec	HMMPfam_Folate_rec	-	no_errors
LOC642943	642943	genome.wustl.edu	36	9	94687941	94687941	+	RNA	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	94687941	94687941	C	A	SNP	LOC642943	XR_039168	human	genbank	54_36p	1	model	rna	NULL	NULL	0.12	-	-	-	pseudogene
LOC642943	642943	genome.wustl.edu	36	9	94688065	94688065	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	94688065	94688065	G	T	SNP	LOC642943	XR_039168	human	genbank	54_36p	1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
LOC642943	642943	genome.wustl.edu	36	9	94688720	94688720	+	RNA	SNP	A	A	G	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	94688720	94688720	A	G	SNP	LOC642943	XR_039168	human	genbank	54_36p	1	model	rna	NULL	NULL	0.01	-	-	-	pseudogene
ENSG00000187900	0	genome.wustl.edu	36	3	99440079	99440079	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	3	99440079	99440079	G	C	SNP	ENSG00000187900	ENST00000341450	human	ensembl	54_36p	1	known	missense	c.77	p.S26T	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
uc001dse.1	0	genome.wustl.edu	36	1	99537168	99537168	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	99537168	99537168	T	A	SNP	uc001dse.1	ENST00000370184	human	ensembl	54_36p	1	known	silent	c.54	p.I18	0.01	NULL	"HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase"	-	no_errors
BTK	695	genome.wustl.edu	36	X	100494971	100494971	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	100494971	100494971	G	A	SNP	BTK	NM_000061	human	genbank	54_36p	-1	reviewed	missense	c.1775	p.S592F	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	###############################################################################################################################################################################################################################################################	-	no_errors
LOC653354	653354	genome.wustl.edu	36	X	100739353	100739353	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	100739353	100739353	T	A	SNP	LOC653354	XM_001717888	human	genbank	54_36p	1	model	nonsense	c.251	p.L84*	0.01	HMMPfam_DUF634	HMMPfam_DUF634	-	no_errors
ZMAT1	84460	genome.wustl.edu	36	X	101039602	101039602	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	101039602	101039602	G	A	SNP	ZMAT1	NM_001011657	human	genbank	54_36p	-1	validated	missense	c.400	p.L134F	0.99	"HMMSmart_SM00451,HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_SM00451,HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
NXF4	55999	genome.wustl.edu	36	X	101709469	101709469	+	RNA	SNP	T	T	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	101709469	101709469	T	G	SNP	NXF4	NR_002216	human	genbank	54_36p	1	validated	rna	NULL	NULL	1	-	-	-	pseudogene
ARMCX5	64860	genome.wustl.edu	36	X	101744756	101744756	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	101744756	101744756	C	G	SNP	ARMCX5	NM_022838	human	genbank	54_36p	1	provisional	missense	c.1031	p.T344S	1	"HMMPfam_DUF634,superfamily_ARM repeat"	"PatternScan_CPSASE_2,HMMPfam_DUF634,superfamily_ARM repeat"	-	no_errors
GPRASP1	9737	genome.wustl.edu	36	X	101797468	101797468	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	101797468	101797468	G	C	SNP	GPRASP1	NM_001099410	human	genbank	54_36p	1	validated	silent	c.1971	p.G657	0	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
GPRASP2	114928	genome.wustl.edu	36	X	101857976	101857976	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	T	T	G	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	101857976	101857976	T	G	SNP	GPRASP2	NM_001004051	human	genbank	54_36p	1	validated	missense	c.1523	p.F508C	0.96	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
BHLHB9	80823	genome.wustl.edu	36	X	101890757	101890757	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	101890757	101890757	G	A	SNP	BHLHB9	NM_030639	human	genbank	54_36p	1	validated	missense	c.178	p.A60T	0	NULL	"superfamily_ARM-type_fold,HMMPfam_DUF634"	-	no_errors
BHLHB9	80823	genome.wustl.edu	36	X	101891283	101891283	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	101891283	101891283	C	G	SNP	BHLHB9	NM_030639	human	genbank	54_36p	1	validated	missense	c.704	p.S235C	0.97	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
TCEAL8	90843	genome.wustl.edu	36	X	102395435	102395435	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	102395435	102395435	G	A	SNP	TCEAL8	NM_001006684	human	genbank	54_36p	-1	reviewed	silent	c.129	p.S43	0.83	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
H2BFM	286436	genome.wustl.edu	36	X	103181350	103181350	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	103181350	103181350	C	T	SNP	H2BFM	XM_001723437	human	genbank	54_36p	1	model	missense	c.460	p.R154C	0	"superfamily_Histone-fold,HMMSmart_H2B"	"PatternScan_HISTONE_H2B,superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone"	-	no_errors
ZCCHC18	644353	genome.wustl.edu	36	X	103245659	103245659	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	103245659	103245659	A	T	SNP	ZCCHC18	ENST00000299903	human	ensembl	54_36p	1	known	missense	c.201	p.Q67H	1	NULL	NULL	-	no_errors
NRK	203447	genome.wustl.edu	36	X	105019014	105019014	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	105019014	105019014	C	T	SNP	NRK	ENST00000243300	human	ensembl	54_36p	1	known	silent	c.324	p.S108	0.98	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
MUM1L1	139221	genome.wustl.edu	36	X	105337315	105337315	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	105337315	105337315	A	T	SNP	MUM1L1	ENST00000337685	human	ensembl	54_36p	1	known	missense	c.1234	p.S412C	1	superfamily_SSF63748	superfamily_SSF63748	-	no_errors
MUM1L1	139221	genome.wustl.edu	36	X	105337677	105337677	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	105337677	105337677	C	G	SNP	MUM1L1	ENST00000337685	human	ensembl	54_36p	1	known	silent	c.1596	p.T532	0.51	NULL	superfamily_SSF63748	-	no_errors
CXorf57	55086	genome.wustl.edu	36	X	105755132	105755132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	105755132	105755132	C	T	SNP	CXorf57	NM_018015	human	genbank	54_36p	1	validated	missense	c.943	p.P315S	0.96	superfamily_Nucleic acid-binding proteins	superfamily_Nucleic acid-binding proteins	-	no_errors
TBC1D8B	54885	genome.wustl.edu	36	X	105950873	105950873	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	105950873	105950873	A	G	SNP	TBC1D8B	NM_017752	human	genbank	54_36p	1	validated	missense	c.352	p.K118E	1	NULL	"HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106656544	106656544	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	106656544	106656544	G	A	SNP	FRMPD3	XM_042978	human	genbank	54_36p	1	model	missense	c.169	p.V57I	1	"superfamily_PDZ,HMMPfam_PDZ"	"PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106727668	106727668	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	106727668	106727668	C	G	SNP	FRMPD3	XM_042978	human	genbank	54_36p	1	model	missense	c.2002	p.R668G	1	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41"	-	no_errors
VSIG1	340547	genome.wustl.edu	36	X	107196873	107196873	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107196873	107196873	C	G	SNP	VSIG1	NM_182607	human	genbank	54_36p	1	provisional	missense	c.265	p.R89G	0.55	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
COL4A6	1288	genome.wustl.edu	36	X	107291514	107291514	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	107291514	107291514	C	A	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	nonsense	c.4327	p.G1443*	1	HMMPfam_Collagen	"HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like"	-	no_errors
COL4A6	1288	genome.wustl.edu	36	X	107304483	107304483	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107304483	107304483	G	T	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	missense	c.2984	p.P995H	0.31	HMMPfam_Collagen	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A6	1288	genome.wustl.edu	36	X	107349615	107349615	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107349615	107349615	A	T	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	missense	c.296	p.V99D	1	HMMPfam_Collagen	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A5	1287	genome.wustl.edu	36	X	107570073	107570073	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107570073	107570073	G	A	SNP	COL4A5	NM_033380	human	genbank	54_36p	1	reviewed	missense	c.62	p.G21E	1	NULL	"HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_C4,HMMSmart_C4"	-	no_errors
COL4A5	1287	genome.wustl.edu	36	X	107817466	107817466	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107817466	107817466	C	T	SNP	COL4A5	NM_033380	human	genbank	54_36p	1	reviewed	missense	c.4414	p.R1472C	1	"HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold"	"HMMPfam_C4,HMMSmart_C4,HMMPfam_Collagen,superfamily_C-type_lectin_fold"	-	no_errors
COL4A5	1287	genome.wustl.edu	36	X	107826227	107826227	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107826227	107826227	G	A	SNP	COL4A5	NM_033380	human	genbank	54_36p	1	reviewed	missense	c.5039	p.R1680Q	1	"HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold"	"HMMPfam_C4,HMMSmart_C4,HMMPfam_Collagen,superfamily_C-type_lectin_fold"	-	no_errors
IRS4	8471	genome.wustl.edu	36	X	107863319	107863319	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107863319	107863319	G	A	SNP	IRS4	NM_003604	human	genbank	54_36p	-1	reviewed	missense	c.2912	p.P971L	0.06	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
IRS4	8471	genome.wustl.edu	36	X	107863869	107863869	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	107863869	107863869	C	T	SNP	IRS4	NM_003604	human	genbank	54_36p	-1	reviewed	missense	c.2362	p.A788T	1	NULL	"HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729"	-	no_errors
RGAG1	57529	genome.wustl.edu	36	X	109581565	109581565	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	109581565	109581565	C	A	SNP	RGAG1	NM_020769	human	genbank	54_36p	1	provisional	missense	c.1064	p.P355H	0.1	NULL	HMMPfam_Retrotrans_gag	-	no_errors
PAK3	5063	genome.wustl.edu	36	X	110253133	110253133	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	110253133	110253133	G	T	SNP	PAK3	NM_002578	human	genbank	54_36p	1	reviewed	missense	c.146	p.R49L	1	NULL	"HMMPfam_PBD,HMMSmart_SM00285,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CAPN6	827	genome.wustl.edu	36	X	110382275	110382275	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	110382275	110382275	A	T	SNP	CAPN6	NM_014289	human	genbank	54_36p	-1	reviewed	silent	c.615	p.T205	0.68	"superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
ZCCHC16	340595	genome.wustl.edu	36	X	111585049	111585049	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	111585049	111585049	C	T	SNP	ZCCHC16	NM_001004308	human	genbank	54_36p	1	validated	missense	c.437	p.P146L	0	NULL	HMMSmart_ZnF_C2HC	-	no_errors
HTR2C	3358	genome.wustl.edu	36	X	113872086	113872086	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	113872086	113872086	T	A	SNP	HTR2C	NM_000868	human	genbank	54_36p	1	reviewed	missense	c.163	p.W55R	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
IL13RA2	3598	genome.wustl.edu	36	X	114151587	114151587	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	114151587	114151587	A	G	SNP	IL13RA2	NM_000640	human	genbank	54_36p	-1	reviewed	silent	c.582	p.N194	0.9	superfamily_FN_III-like	"superfamily_FN_III-like,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2"	-	no_errors
LRCH2	57631	genome.wustl.edu	36	X	114254104	114254104	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	114254104	114254104	T	A	SNP	LRCH2	NM_020871	human	genbank	54_36p	-1	validated	missense	c.2229	p.K743N	1	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH"	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH"	-	no_errors
LUZP4	51213	genome.wustl.edu	36	X	114430672	114430672	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	G	T	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	X	114430672	114430672	G	T	SNP	LUZP4	NM_016383	human	genbank	54_36p	1	validated	missense	c.91	p.D31Y	0.97	NULL	NULL	-	no_errors
LUZP4	51213	genome.wustl.edu	36	X	114444178	114444178	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	114444178	114444178	A	T	SNP	LUZP4	NM_016383	human	genbank	54_36p	1	validated	missense	c.281	p.Q94L	0.01	NULL	NULL	-	no_errors
SLC6A14	11254	genome.wustl.edu	36	X	115486270	115486270	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	115486270	115486270	G	C	SNP	SLC6A14	NM_007231	human	genbank	54_36p	1	validated	missense	c.323	p.W108S	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
LOC653155	653155	genome.wustl.edu	36	X	115766826	115766826	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	115766826	115766826	C	G	SNP	LOC653155	XM_926254	human	genbank	54_36p	-1	model	missense	c.36	p.M12I	1	NULL	HMMPfam_Pkinase	-	no_errors
MSL3	10943	genome.wustl.edu	36	X	11691827	11691827	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	11691827	11691827	C	T	SNP	MSL3	NM_078629	human	genbank	54_36p	1	reviewed	missense	c.757	p.L253F	1	HMMPfam_MRG	"HMMSmart_SM00298,HMMPfam_MRG"	-	no_errors
DOCK11	139818	genome.wustl.edu	36	X	117584002	117584002	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	117584002	117584002	A	G	SNP	DOCK11	NM_144658	human	genbank	54_36p	1	validated	missense	c.700	p.K234E	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto"	-	no_errors
ZCCHC12	170261	genome.wustl.edu	36	X	117843682	117843682	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	117843682	117843682	G	A	SNP	ZCCHC12	NM_173798	human	genbank	54_36p	1	provisional	silent	c.447	p.V149	1	NULL	NULL	-	no_errors
KIAA1210	57481	genome.wustl.edu	36	X	118107527	118107527	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	118107527	118107527	C	T	SNP	KIAA1210	NM_020721	human	genbank	54_36p	-1	validated	missense	c.1694	p.G565D	0.01	NULL	NULL	-	no_errors
KIAA1210	57481	genome.wustl.edu	36	X	118123066	118123066	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	118123066	118123066	A	T	SNP	KIAA1210	NM_020721	human	genbank	54_36p	-1	validated	missense	c.985	p.L329M	0	NULL	NULL	-	no_errors
SLC25A5	292	genome.wustl.edu	36	X	118488012	118488012	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	118488012	118488012	G	A	SNP	SLC25A5	NM_001152	human	genbank	54_36p	1	validated	missense	c.472	p.G158S	1	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	-	no_errors
LAMP2	3920	genome.wustl.edu	36	X	119466852	119466852	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	119466852	119466852	C	A	SNP	LAMP2	NM_002294	human	genbank	54_36p	-1	reviewed	splice_site	c.556+1	e4+1	1	-	-	-	no_errors
THOC2	57187	genome.wustl.edu	36	X	122588069	122588069	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	122588069	122588069	G	T	SNP	THOC2	NM_001081550	human	genbank	54_36p	-1	validated	missense	c.2883	p.D961E	1	NULL	NULL	-	no_errors
THOC2	57187	genome.wustl.edu	36	X	122657585	122657585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	122657585	122657585	C	T	SNP	THOC2	NM_001081550	human	genbank	54_36p	-1	validated	missense	c.568	p.D190N	1	NULL	NULL	-	no_errors
XIAP	331	genome.wustl.edu	36	X	122847726	122847726	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	122847726	122847726	A	G	SNP	XIAP	NM_001167	human	genbank	54_36p	1	reviewed	missense	c.533	p.H178R	0.65	"superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR"	"PatternScan_ZF_RING_1,superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_RING"	-	no_errors
STAG2	10735	genome.wustl.edu	36	X	123011736	123011736	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	123011736	123011736	C	A	SNP	STAG2	NM_001042749	human	genbank	54_36p	1	validated	silent	c.913	p.R305	0.99	superfamily_ARM-type_fold	"HMMPfam_STAG,superfamily_ARM-type_fold"	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123345571	123345571	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	123345571	123345571	C	A	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.6870	p.E2290D	1	NULL	"HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat"	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123345669	123345669	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	123345669	123345669	C	T	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.6772	p.A2258T	0.98	HMMPfam_RHS_repeat	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123345863	123345863	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	123345863	123345863	G	C	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.6578	p.P2193R	1	NULL	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123458777	123458777	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	123458777	123458777	A	T	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.3465	p.N1155K	1	NULL	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
ODZ1	10178	genome.wustl.edu	36	X	123613594	123613594	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	123613594	123613594	T	C	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.1430	p.D477G	0.85	NULL	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
FRMPD4	9758	genome.wustl.edu	36	X	12648667	12648667	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	12648667	12648667	T	C	SNP	FRMPD4	ENST00000304087	human	ensembl	54_36p	1	known	missense	c.4037	p.I1346T	1	NULL	"superfamily_WW_Rsp5_WWP,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	-	no_start_codon
ACTRT1	139741	genome.wustl.edu	36	X	127012919	127012919	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	127012919	127012919	C	G	SNP	ACTRT1	NM_138289	human	genbank	54_36p	-1	provisional	missense	c.948	p.K316N	1	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN"	-	no_errors
KRT18P44	139748	genome.wustl.edu	36	X	127676354	127676354	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	127676354	127676354	G	A	SNP	KRT18P44	XM_001719134	human	genbank	54_36p	1	model	missense	c.727	p.A243T	0.91	NULL	HMMPfam_Filament	-	pseudogene
TLR8	51311	genome.wustl.edu	36	X	12848616	12848616	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	12848616	12848616	G	T	SNP	TLR8	NM_138636	human	genbank	54_36p	1	reviewed	silent	c.1536	p.L512	1	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52047,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_TIR,HMMPfam_TIR"	-	no_errors
TLR8	51311	genome.wustl.edu	36	X	12848802	12848802	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	12848802	12848802	A	T	SNP	TLR8	NM_138636	human	genbank	54_36p	1	reviewed	silent	c.1722	p.T574	0.81	superfamily_SSF52058	"HMMPfam_TIR,superfamily_TIR,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058"	-	no_errors
UTP14A	10813	genome.wustl.edu	36	X	128869021	128869021	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	128869021	128869021	C	G	SNP	UTP14A	ENST00000394422	human	ensembl	54_36p	1	known	splice_site	c.25-1	e2-1	0.99	-	-	-	no_start_codon
BCORL1	63035	genome.wustl.edu	36	X	128974829	128974829	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	128974829	128974829	A	T	SNP	BCORL1	NM_021946	human	genbank	54_36p	1	validated	missense	c.400	p.N134Y	0	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
AIFM1	9131	genome.wustl.edu	36	X	129093440	129093440	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	129093440	129093440	G	T	SNP	AIFM1	NM_004208	human	genbank	54_36p	-1	reviewed	silent	c.1464	p.P488	0.49	superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain"	-	no_errors
AIFM1	9131	genome.wustl.edu	36	X	129098804	129098804	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	129098804	129098804	G	C	SNP	AIFM1	NM_004208	human	genbank	54_36p	-1	reviewed	silent	c.1005	p.P335	0.91	"HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
GPR119	139760	genome.wustl.edu	36	X	129346190	129346190	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	129346190	129346190	G	A	SNP	GPR119	NM_178471	human	genbank	54_36p	-1	provisional	missense	c.913	p.L305F	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ENOX2	10495	genome.wustl.edu	36	X	129599066	129599066	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	129599066	129599066	C	A	SNP	ENOX2	NM_182314	human	genbank	54_36p	-1	reviewed	splice_site	c.1217-1	e9-1	0.99	-	-	-	no_errors
ARHGAP36	158763	genome.wustl.edu	36	X	130048248	130048248	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	130048248	130048248	C	A	SNP	FLJ30058	NM_144967	human	genbank	54_36p	1	validated	missense	c.1414	p.L472I	1	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
IGSF1	3547	genome.wustl.edu	36	X	130236275	130236275	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	130236275	130236275	G	C	SNP	IGSF1	NM_001555	human	genbank	54_36p	-1	validated	missense	c.3730	p.L1244V	0.99	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408"	-	no_errors
MST4	51765	genome.wustl.edu	36	X	131034719	131034719	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	131034719	131034719	C	T	SNP	MST4	NM_016542	human	genbank	54_36p	1	reviewed	silent	c.1143	p.L381	0.93	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
MST4	51765	genome.wustl.edu	36	X	131034720	131034720	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	131034720	131034720	G	A	SNP	MST4	NM_016542	human	genbank	54_36p	1	reviewed	missense	c.1144	p.E382K	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
RAP2C	57826	genome.wustl.edu	36	X	131175969	131175969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	131175969	131175969	C	G	SNP	RAP2C	NM_021183	human	genbank	54_36p	-1	provisional	missense	c.460	p.D154H	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	-	no_errors
ATXN3L	92552	genome.wustl.edu	36	X	13247265	13247265	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	13247265	13247265	C	T	SNP	ATXN3L	ENST00000380622	human	ensembl	54_36p	-1	known	missense	c.710	p.R237H	1	"HMMPfam_UIM,HMMSmart_UIM"	"HMMPfam_Josephin,HMMPfam_UIM,HMMSmart_UIM"	-	no_errors
ATXN3L	92552	genome.wustl.edu	36	X	13247537	13247537	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	13247537	13247537	T	G	SNP	ATXN3L	ENST00000380622	human	ensembl	54_36p	-1	known	silent	c.438	p.T146	1	HMMPfam_Josephin	"HMMPfam_UIM,HMMSmart_UIM,HMMPfam_Josephin"	-	no_errors
MOSPD1	56180	genome.wustl.edu	36	X	133861042	133861042	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	133861042	133861042	C	T	SNP	MOSPD1	NM_019556	human	genbank	54_36p	-1	provisional	missense	c.88	p.D30N	1	"HMMPfam_Motile_Sperm,superfamily_PapD-like"	"HMMPfam_Motile_Sperm,superfamily_PapD-like"	-	no_errors
ZNF449	203523	genome.wustl.edu	36	X	134321554	134321554	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	134321554	134321554	C	A	SNP	ZNF449	NM_152695	human	genbank	54_36p	1	validated	missense	c.631	p.Q211K	0	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GPR112	139378	genome.wustl.edu	36	X	135255177	135255177	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	135255177	135255177	C	T	SNP	GPR112	NM_153834	human	genbank	54_36p	1	validated	missense	c.1646	p.S549L	0	NULL	"superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR112	139378	genome.wustl.edu	36	X	135256374	135256374	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	135256374	135256374	G	A	SNP	GPR112	NM_153834	human	genbank	54_36p	1	validated	missense	c.2843	p.G948E	0	NULL	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_ConA_like_lec_gl,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BRS3	680	genome.wustl.edu	36	X	135400215	135400215	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	135400215	135400215	C	G	SNP	BRS3	NM_001727	human	genbank	54_36p	1	validated	missense	c.692	p.S231C	0.7	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HTATSF1	27336	genome.wustl.edu	36	X	135407517	135407517	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	135407517	135407517	G	C	SNP	HTATSF1	NM_014500	human	genbank	54_36p	1	provisional	missense	c.8	p.G3A	0.63	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
RBMX	27316	genome.wustl.edu	36	X	135785393	135785393	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	135785393	135785393	T	C	SNP	RBMX	NM_002139	human	genbank	54_36p	-1	reviewed	missense	c.559	p.R187G	1	HMMPfam_RBM1CTR	"HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMPfam_RBM1CTR"	-	no_errors
GPR101	83550	genome.wustl.edu	36	X	135941269	135941269	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	135941269	135941269	G	C	SNP	GPR101	NM_054021	human	genbank	54_36p	-1	provisional	missense	c.231	p.D77E	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR101	83550	genome.wustl.edu	36	X	135941474	135941474	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	135941474	135941474	G	A	SNP	GPR101	NM_054021	human	genbank	54_36p	-1	provisional	missense	c.26	p.T9M	0.72	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
CSF2RA	1438	genome.wustl.edu	36	X	1367745	1367745	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	1367745	1367745	G	A	SNP	CSF2RA	NM_006140	human	genbank	54_36p	1	reviewed	missense	c.437	p.R146H	0	"superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2"	"superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2"	-	no_errors
FGF13	2258	genome.wustl.edu	36	X	137542740	137542740	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	137542740	137542740	C	T	SNP	FGF13	NM_004114	human	genbank	54_36p	-1	reviewed	silent	c.675	p.K225	1	NULL	"superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
CSF2RA	1438	genome.wustl.edu	36	X	1379504	1379504	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	1379504	1379504	G	T	SNP	CSF2RA	NM_006140	human	genbank	54_36p	1	reviewed	nonsense	c.931	p.E311*	0	superfamily_Fibronectin type III	"HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_Fibronectin type III"	-	no_errors
ATP11C	286410	genome.wustl.edu	36	X	138678246	138678246	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	138678246	138678246	G	A	SNP	ATP11C	NM_173694	human	genbank	54_36p	-1	validated	missense	c.2239	p.H747Y	1	superfamily_HAD-like	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
MAGEC2	51438	genome.wustl.edu	36	X	141118730	141118730	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	141118730	141118730	A	G	SNP	MAGEC2	NM_016249	human	genbank	54_36p	-1	reviewed	missense	c.710	p.I237T	0.08	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
SPANXN3	139067	genome.wustl.edu	36	X	142424335	142424335	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	142424335	142424335	G	C	SNP	SPANXN3	NM_001009609	human	genbank	54_36p	-1	validated	missense	c.401	p.S134C	0.05	NULL	HMMPfam_SPAN-X	-	no_errors
SLITRK2	84631	genome.wustl.edu	36	X	144712039	144712039	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	144712039	144712039	G	A	SNP	SLITRK2	NM_032539	human	genbank	54_36p	1	validated	missense	c.404	p.S135N	1	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	"HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT"	-	no_errors
SLITRK2	84631	genome.wustl.edu	36	X	144712869	144712869	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	144712869	144712869	G	A	SNP	SLITRK2	NM_032539	human	genbank	54_36p	1	validated	missense	c.1234	p.A412T	1	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	-	no_errors
GLRA2	2742	genome.wustl.edu	36	X	14537180	14537180	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	14537180	14537180	G	A	SNP	GLRA2	NM_002063	human	genbank	54_36p	1	validated	missense	c.862	p.A288T	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
FMR1	2332	genome.wustl.edu	36	X	146817604	146817604	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	146817604	146817604	G	T	SNP	FMR1	NM_002024	human	genbank	54_36p	1	reviewed	splice_site	c.270+1	e4+1	1	-	-	-	no_errors
AFF2	2334	genome.wustl.edu	36	X	147856250	147856250	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	T	T					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	147856250	147856250	T	C	SNP	AFF2	NM_002025	human	genbank	54_36p	1	validated	silent	c.3150	p.L1050	0.01	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
MAGEA11	4110	genome.wustl.edu	36	X	148576685	148576685	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	148576685	148576685	G	T	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	missense	c.574	p.L192I	0	NULL	HMMPfam_MAGE	-	no_errors
MTMR1	8776	genome.wustl.edu	36	X	149651706	149651706	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	149651706	149651706	C	T	SNP	MTMR1	NM_003828	human	genbank	54_36p	1	reviewed	missense	c.902	p.T301M	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related"	"HMMSmart_SM00568,superfamily_PH domain-like,HMMPfam_GRAM,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
CD99L2	83692	genome.wustl.edu	36	X	149689456	149689456	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	149689456	149689456	C	T	SNP	CD99L2	NM_031462	human	genbank	54_36p	-1	validated	missense	c.700	p.V234M	1	NULL	NULL	-	no_errors
LOC286456	286456	genome.wustl.edu	36	X	150146369	150146369	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	150146369	150146369	A	T	SNP	LOC286456	XR_016302	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
PASD1	139135	genome.wustl.edu	36	X	150544610	150544610	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	150544610	150544610	C	T	SNP	PASD1	NM_173493	human	genbank	54_36p	1	validated	missense	c.581	p.A194V	0	NULL	"HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
PASD1	139135	genome.wustl.edu	36	X	150593173	150593173	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	150593173	150593173	A	T	SNP	PASD1	NM_173493	human	genbank	54_36p	1	validated	silent	c.2034	p.S678	0	NULL	"HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
PRRG3	79057	genome.wustl.edu	36	X	150619847	150619847	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	150619847	150619847	A	T	SNP	PRRG3	NM_024082	human	genbank	54_36p	1	provisional	missense	c.382	p.T128S	0.99	NULL	"HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1"	-	no_errors
PRRG3	79057	genome.wustl.edu	36	X	150619956	150619957	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	150619956	150619957	-	T	INS	PRRG3	NM_024082	human	genbank	54_36p	1	provisional	frame_shift_ins	c.491_492	p.R166fs	0.269:0.274	NULL	"HMMPfam_Gla,HMMSmart_GLA,PatternScan_GLA_1,superfamily_VitK_dep_GLA"	-	no_errors
FATE1	89885	genome.wustl.edu	36	X	150641049	150641049	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	150641049	150641049	A	C	SNP	FATE1	NM_033085	human	genbank	54_36p	1	validated	silent	c.360	p.A120	0	NULL	NULL	-	no_errors
GABRE	2564	genome.wustl.edu	36	X	150888815	150888815	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	150888815	150888815	A	T	SNP	GABRE	NM_004961	human	genbank	54_36p	-1	reviewed	silent	c.324	p.P108	0.63	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRA3	2556	genome.wustl.edu	36	X	151087577	151087577	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	151087577	151087577	C	T	SNP	GABRA3	NM_000808	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.A420T	1	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRQ	55879	genome.wustl.edu	36	X	151571967	151571967	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	151571967	151571967	A	G	SNP	GABRQ	NM_018558	human	genbank	54_36p	1	reviewed	missense	c.1466	p.H489R	0.01	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
CSAG1	158511	genome.wustl.edu	36	X	151659815	151659815	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	151659815	151659815	G	T	SNP	CSAG1	NM_001102576	human	genbank	54_36p	1	reviewed	missense	c.188	p.R63M	0.01	NULL	NULL	-	no_errors
ZNF185	7739	genome.wustl.edu	36	X	151889641	151889641	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	151889641	151889641	A	G	SNP	ZNF185	NM_007150	human	genbank	54_36p	1	validated	splice_site	c.1972-2	e22-2	1	-	-	-	no_errors
MAGEA1	4100	genome.wustl.edu	36	X	152135372	152135372	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	152135372	152135372	T	A	SNP	MAGEA1	NM_004988	human	genbank	54_36p	-1	reviewed	missense	c.833	p.K278I	0	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
ASB11	140456	genome.wustl.edu	36	X	15216001	15216001	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	15216001	15216001	C	G	SNP	ASB11	NM_080873	human	genbank	54_36p	-1	reviewed	missense	c.770	p.R257T	0.03	"superfamily_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SOCS_box"	-	no_errors
ZNF275	10838	genome.wustl.edu	36	X	152265671	152265671	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	152265671	152265671	C	A	SNP	ZNF275	NM_001080485	human	genbank	54_36p	1	validated	missense	c.502	p.L168I	0.06	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ATP2B3	492	genome.wustl.edu	36	X	152498933	152498933	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	152498933	152498933	G	A	SNP	ATP2B3	NM_001001344	human	genbank	54_36p	1	reviewed	missense	c.3646	p.V1216M	0.98	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DUSP9	1852	genome.wustl.edu	36	X	152568775	152568775	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	152568775	152568775	A	T	SNP	DUSP9	NM_001395	human	genbank	54_36p	1	reviewed	missense	c.976	p.N326Y	1	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	"PatternScan_TYR_PHOSPHATASE_1,superfamily_Rhodanese-like,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	-	no_errors
HCFC1	3054	genome.wustl.edu	36	X	152876088	152876088	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	152876088	152876088	T	C	SNP	HCFC1	NM_005334	human	genbank	54_36p	-1	reviewed	missense	c.2224	p.S742G	1	NULL	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
IRAK1	3654	genome.wustl.edu	36	X	152938100	152938100	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	152938100	152938100	G	A	SNP	IRAK1	NM_001569	human	genbank	54_36p	-1	reviewed	missense	c.280	p.R94C	0.96	"superfamily_DEATH domain,HMMPfam_Death"	"superfamily_DEATH domain,HMMPfam_Death,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TKTL1	8277	genome.wustl.edu	36	X	153196795	153196795	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153196795	153196795	G	A	SNP	TKTL1	NM_012253	human	genbank	54_36p	1	validated	missense	c.943	p.D315N	1	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transket_pyr"	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C"	-	no_errors
FAM50A	9130	genome.wustl.edu	36	X	153328092	153328092	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153328092	153328092	G	A	SNP	FAM50A	NM_004699	human	genbank	54_36p	1	provisional	missense	c.432	p.M144I	1	HMMPfam_XAP5	HMMPfam_XAP5	-	no_errors
SLC10A3	8273	genome.wustl.edu	36	X	153369636	153369636	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153369636	153369636	C	T	SNP	SLC10A3	NM_019848	human	genbank	54_36p	-1	reviewed	missense	c.838	p.D280N	1	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
G6PD	2539	genome.wustl.edu	36	X	153415852	153415852	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153415852	153415852	G	A	SNP	G6PD	NM_000402	human	genbank	54_36p	-1	reviewed	missense	c.629	p.S210F	1	"superfamily_NAD(P)-bd,HMMPfam_G6PD_N"	"superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C"	-	no_errors
MPP1	4354	genome.wustl.edu	36	X	153665519	153665519	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153665519	153665519	C	G	SNP	MPP1	NM_002436	human	genbank	54_36p	-1	reviewed	missense	c.843	p.K281N	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin"	-	no_errors
MPP1	4354	genome.wustl.edu	36	X	153673314	153673314	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153673314	153673314	T	A	SNP	MPP1	NM_002436	human	genbank	54_36p	-1	reviewed	silent	c.249	p.G83	0.98	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	"HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_SH3_2,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
F8	2157	genome.wustl.edu	36	X	153743231	153743231	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153743231	153743231	C	G	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	missense	c.6679	p.A2227P	1	"superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C"	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
F8	2157	genome.wustl.edu	36	X	153786280	153786280	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	153786280	153786280	C	A	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	silent	c.5586	p.L1862	1	superfamily_Cupredoxins	"HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3"	-	no_errors
CLIC2	1193	genome.wustl.edu	36	X	154181291	154181291	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	154181291	154181291	C	T	SNP	CLIC2	NM_001289	human	genbank	54_36p	-1	reviewed	splice_site	c.293+1	e3+1	1	-	-	-	no_errors
TMLHE	55217	genome.wustl.edu	36	X	154407449	154407449	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	154407449	154407449	C	T	SNP	TMLHE	NM_018196	human	genbank	54_36p	-1	validated	missense	c.220	p.V74I	1	NULL	"superfamily_Clavaminate synthase-like,HMMPfam_TauD"	-	no_errors
BMX	660	genome.wustl.edu	36	X	15450513	15450513	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	15450513	15450513	A	C	SNP	BMX	NM_001721	human	genbank	54_36p	1	validated	missense	c.634	p.S212R	0	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TMEM27	57393	genome.wustl.edu	36	X	15556023	15556023	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	15556023	15556023	G	A	SNP	TMEM27	NM_020665	human	genbank	54_36p	-1	provisional	missense	c.661	p.P221S	1	NULL	NULL	-	no_errors
GRPR	2925	genome.wustl.edu	36	X	16078640	16078640	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	16078640	16078640	A	G	SNP	GRPR	NM_005314	human	genbank	54_36p	1	reviewed	silent	c.705	p.K235	0.38	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
BEND2	139105	genome.wustl.edu	36	X	18144655	18144655	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	18144655	18144655	C	T	SNP	BEND2	NM_153346	human	genbank	54_36p	-1	validated	missense	c.145	p.V49I	0	NULL	HMMPfam_BEN	-	no_errors
MAP3K15	389840	genome.wustl.edu	36	X	19290830	19290831	+	Frame_Shift_Del	DEL	AG	AG	-	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	19290830	19290831	AG	-	DEL	MAP3K15	NM_001001671	human	genbank	54_36p	-1	validated	frame_shift_del	c.2051_2050	p.L684fs	0.287:0.230	NULL	"HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM_homology"	"(deletion:cds_exon[19290777,19290889])"	no_errors
MAP7D2	256714	genome.wustl.edu	36	X	19938877	19938877	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	19938877	19938877	G	A	SNP	MAP7D2	NM_152780	human	genbank	54_36p	-1	provisional	missense	c.2164	p.P722S	1	NULL	HMMPfam_MAP7	-	no_errors
KLHL34	257240	genome.wustl.edu	36	X	21584090	21584090	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	21584090	21584090	T	G	SNP	KLHL34	NM_153270	human	genbank	54_36p	-1	provisional	missense	c.1738	p.K580Q	1	superfamily_Gal_oxid_central	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
MBTPS2	51360	genome.wustl.edu	36	X	21771329	21771329	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	21771329	21771329	C	T	SNP	MBTPS2	NM_015884	human	genbank	54_36p	1	validated	missense	c.196	p.R66W	1	NULL	"HMMPfam_Peptidase_M50,PatternScan_ZINC_PROTEASE"	-	no_errors
PHEX	5251	genome.wustl.edu	36	X	22025078	22025078	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	22025078	22025078	G	T	SNP	PHEX	NM_000444	human	genbank	54_36p	1	reviewed	splice_site	c.933+1	e8+1	1	-	-	-	no_errors
PHEX	5251	genome.wustl.edu	36	X	22039573	22039573	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	22039573	22039573	C	G	SNP	PHEX	NM_000444	human	genbank	54_36p	1	reviewed	missense	c.1147	p.Q383E	1	"superfamily_SSF55486,HMMPfam_Peptidase_M13_N"	"superfamily_SSF55486,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,PatternScan_ZINC_PROTEASE"	-	no_errors
PTCHD1	139411	genome.wustl.edu	36	X	23321291	23321291	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	23321291	23321291	A	G	SNP	PTCHD1	NM_173495	human	genbank	54_36p	1	validated	missense	c.1735	p.T579A	1	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
PTCHD1	139411	genome.wustl.edu	36	X	23321597	23321597	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	23321597	23321597	G	A	SNP	PTCHD1	NM_173495	human	genbank	54_36p	1	validated	missense	c.2041	p.V681I	1	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
DHRSX	207063	genome.wustl.edu	36	X	2336807	2336807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	2336807	2336807	C	T	SNP	DHRSX	NM_145177	human	genbank	54_36p	-1	validated	missense	c.265	p.E89K	0.03	"superfamily_NAD(P)-bd,HMMPfam_adh_short"	"superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
ACOT9	23597	genome.wustl.edu	36	X	23641194	23641194	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	23641194	23641194	G	C	SNP	ACOT9	NM_001037171	human	genbank	54_36p	-1	validated	missense	c.641	p.A214G	1	superfamily_Thioesterase/thiol ester dehydrase-isomerase	superfamily_Thioesterase/thiol ester dehydrase-isomerase	-	no_errors
KLHL15	80311	genome.wustl.edu	36	X	23916065	23916065	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	23916065	23916065	C	T	SNP	KLHL15	NM_030624	human	genbank	54_36p	-1	provisional	nonsense	c.1709	p.W570*	1	"superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
ZFX	7543	genome.wustl.edu	36	X	24136256	24136256	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	24136256	24136256	A	G	SNP	ZFX	NM_003410	human	genbank	54_36p	1	validated	missense	c.941	p.N314S	1	HMMPfam_Zfx_Zfy_act	"HMMPfam_Zfx_Zfy_act,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFX	7543	genome.wustl.edu	36	X	24136297	24136297	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	24136297	24136297	G	A	SNP	ZFX	NM_003410	human	genbank	54_36p	1	validated	missense	c.982	p.V328I	0.99	HMMPfam_Zfx_Zfy_act	"HMMPfam_Zfx_Zfy_act,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
POLA1	5422	genome.wustl.edu	36	X	24642655	24642655	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	24642655	24642655	C	T	SNP	POLA1	NM_016937	human	genbank	54_36p	1	validated	missense	c.392	p.P131L	1	NULL	"superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B,HMMPfam_zf-DNA_Pol,superfamily_SSF90234"	-	no_errors
MAGEB5	347541	genome.wustl.edu	36	X	26145962	26145962	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	26145962	26145962	C	A	SNP	MAGEB5	XM_293407	human	genbank	54_36p	1	model	missense	c.899	p.A300D	0.01	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
XG	7499	genome.wustl.edu	36	X	2739383	2739383	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	2739383	2739383	T	C	SNP	XG	NM_175569	human	genbank	54_36p	1	reviewed	missense	c.416	p.M139T	0.02	NULL	NULL	-	no_errors
DCAF8L1	139425	genome.wustl.edu	36	X	27908086	27908086	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	27908086	27908086	C	T	SNP	WDR42B	NM_001017930	human	genbank	54_36p	-1	provisional	silent	c.1287	p.K429	1	"superfamily_WD40_like,HMMSmart_WD40"	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	-	no_errors
DCAF8L1	139425	genome.wustl.edu	36	X	27908187	27908187	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	27908187	27908187	C	T	SNP	WDR42B	NM_001017930	human	genbank	54_36p	-1	provisional	missense	c.1186	p.V396I	1	"HMMSmart_WD40,superfamily_WD40_like"	"HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
IL1RAPL1	11141	genome.wustl.edu	36	X	29848010	29848010	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	29848010	29848010	A	C	SNP	IL1RAPL1	NM_014271	human	genbank	54_36p	1	reviewed	missense	c.935	p.E312A	1	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
NR0B1	190	genome.wustl.edu	36	X	30236262	30236262	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	30236262	30236262	G	A	SNP	NR0B1	NM_000475	human	genbank	54_36p	-1	reviewed	silent	c.1140	p.Y380	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
LOC100130233	100130233	genome.wustl.edu	36	X	32134152	32134152	+	RNA	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	32134152	32134152	G	T	SNP	LOC100130233	XR_038856	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
DMD	1756	genome.wustl.edu	36	X	32290831	32290831	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	32290831	32290831	C	A	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	nonsense	c.5320	p.G1774*	1	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	-	no_errors
DMD	1756	genome.wustl.edu	36	X	32292683	32292683	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	32292683	32292683	C	G	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	missense	c.5091	p.Q1697H	0.6	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
DMD	1756	genome.wustl.edu	36	X	32493821	32493821	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	32493821	32493821	G	T	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	silent	c.1911	p.T637	0.98	"HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
DMD	1756	genome.wustl.edu	36	X	32493899	32493899	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	32493899	32493899	T	C	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	silent	c.1833	p.E611	1	"HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
MXRA5	25878	genome.wustl.edu	36	X	3251268	3251268	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	3251268	3251268	G	A	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.2458	p.P820S	0	NULL	"HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set"	-	no_errors
MXRA5	25878	genome.wustl.edu	36	X	3251454	3251454	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	3251454	3251454	C	T	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.2272	p.V758I	0.01	NULL	"HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
DMD	1756	genome.wustl.edu	36	X	32573127	32573127	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	32573127	32573127	C	T	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	missense	c.1024	p.D342N	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
MXRA5	25878	genome.wustl.edu	36	X	3258743	3258743	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	3258743	3258743	T	G	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.260	p.H87P	1	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	"HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
FAM47B	170062	genome.wustl.edu	36	X	34872227	34872227	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	34872227	34872227	C	G	SNP	FAM47B	NM_152631	human	genbank	54_36p	1	predicted	missense	c.1358	p.S453C	0	NULL	NULL	-	no_errors
MAGEB16	139604	genome.wustl.edu	36	X	35730537	35730537	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	35730537	35730537	T	A	SNP	MAGEB16	NM_001099921	human	genbank	54_36p	1	provisional	missense	c.303	p.D101E	0	NULL	HMMPfam_MAGE	-	no_errors
FAM47C	442444	genome.wustl.edu	36	X	36937298	36937298	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	36937298	36937298	T	C	SNP	FAM47C	NM_001013736	human	genbank	54_36p	1	provisional	silent	c.894	p.P298	0.11	NULL	NULL	-	no_errors
FAM47C	442444	genome.wustl.edu	36	X	36938205	36938205	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	36938205	36938205	A	G	SNP	FAM47C	NM_001013736	human	genbank	54_36p	1	provisional	missense	c.1801	p.T601A	0	NULL	NULL	-	no_errors
FAM47C	442444	genome.wustl.edu	36	X	36938334	36938334	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	36938334	36938334	C	G	SNP	FAM47C	NM_001013736	human	genbank	54_36p	1	provisional	missense	c.1930	p.P644A	0.65	NULL	NULL	-	no_errors
PRRG1	5638	genome.wustl.edu	36	X	37170088	37170088	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	37170088	37170088	A	G	SNP	PRRG1	NM_000950	human	genbank	54_36p	1	validated	missense	c.85	p.R29G	1	"HMMSmart_SM00069,superfamily_GLA-domain,HMMPfam_Gla"	"HMMSmart_SM00069,superfamily_GLA-domain,HMMPfam_Gla,PatternScan_GLA_1"	-	no_errors
OTC	5009	genome.wustl.edu	36	X	38096920	38096920	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	38096920	38096920	A	T	SNP	OTC	NM_000531	human	genbank	54_36p	1	reviewed	missense	c.27	p.L9F	0.99	NULL	"superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace_N,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_OTCace"	-	no_errors
BCOR	54880	genome.wustl.edu	36	X	39807015	39807015	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	39807015	39807015	G	A	SNP	BCOR	NM_017745	human	genbank	54_36p	-1	reviewed	silent	c.3999	p.H1333	1	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
DDX3X	1654	genome.wustl.edu	36	X	41091083	41091083	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	41091083	41091083	G	C	SNP	DDX3X	NM_001356	human	genbank	54_36p	1	reviewed	missense	c.1643	p.R548T	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
DDX3X	1654	genome.wustl.edu	36	X	41091091	41091091	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	41091091	41091091	A	C	SNP	DDX3X	NM_001356	human	genbank	54_36p	1	reviewed	missense	c.1651	p.N551H	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CASK	8573	genome.wustl.edu	36	X	41331178	41331178	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	41331178	41331178	C	A	SNP	CASK	NM_003688	human	genbank	54_36p	-1	validated	nonsense	c.1240	p.E414*	1	"HMMSmart_L27,HMMPfam_L27"	###############################################################################################################################################################################################################################################################	-	no_errors
CASK	8573	genome.wustl.edu	36	X	41415661	41415661	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	41415661	41415661	C	G	SNP	CASK	NM_003688	human	genbank	54_36p	-1	validated	missense	c.496	p.A166P	1	"HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
MAOA	4128	genome.wustl.edu	36	X	43456951	43456951	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	43456951	43456951	C	A	SNP	MAOA	NM_000240	human	genbank	54_36p	1	reviewed	missense	c.467	p.T156N	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
MAOB	4129	genome.wustl.edu	36	X	43537718	43537718	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	43537718	43537718	A	T	SNP	MAOB	NM_000898	human	genbank	54_36p	-1	reviewed	missense	c.820	p.F274I	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
ZNF674	641339	genome.wustl.edu	36	X	46245242	46245242	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	46245242	46245242	A	T	SNP	ZNF674	NM_001039891	human	genbank	54_36p	-1	provisional	missense	c.726	p.H242Q	0.68	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SLC9A7	84679	genome.wustl.edu	36	X	46351437	46351437	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	46351437	46351437	G	A	SNP	SLC9A7	NM_032591	human	genbank	54_36p	-1	reviewed	missense	c.2072	p.T691M	0.85	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
SLC9A7	84679	genome.wustl.edu	36	X	46406502	46406502	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	46406502	46406502	T	G	SNP	SLC9A7	NM_032591	human	genbank	54_36p	-1	reviewed	missense	c.934	p.T312P	1	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
USP11	8237	genome.wustl.edu	36	X	46986479	46986479	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	46986479	46986479	G	A	SNP	USP11	NM_004651	human	genbank	54_36p	1	reviewed	missense	c.1363	p.V455M	1	"superfamily_SSF54001,HMMPfam_UCH"	"HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
SYN1	6853	genome.wustl.edu	36	X	47320545	47320545	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	47320545	47320545	T	C	SNP	SYN1	NM_006950	human	genbank	54_36p	-1	reviewed	missense	c.1087	p.I363V	1	"superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_Synapsin_C"	"HMMPfam_Synapsin_N,PatternScan_SYNAPSIN_1,HMMPfam_Synapsin,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_Synapsin_C,PatternScan_SYNAPSIN_2"	-	no_errors
ELK1	2002	genome.wustl.edu	36	X	47385680	47385680	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	47385680	47385680	C	G	SNP	ELK1	NM_005229	human	genbank	54_36p	-1	reviewed	missense	c.105	p.K35N	1	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
ZNF81	347344	genome.wustl.edu	36	X	47659779	47659779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	47659779	47659779	A	G	SNP	ZNF81	NM_007137	human	genbank	54_36p	1	validated	missense	c.790	p.N264D	0.17	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF182	7569	genome.wustl.edu	36	X	47721099	47721099	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	47721099	47721099	T	C	SNP	ZNF182	NM_006962	human	genbank	54_36p	-1	validated	missense	c.1331	p.N444S	0.01	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF182	7569	genome.wustl.edu	36	X	47721660	47721660	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	47721660	47721660	G	A	SNP	ZNF182	NM_006962	human	genbank	54_36p	-1	validated	missense	c.770	p.T257M	0.99	superfamily_SSF57667	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
SLC38A5	92745	genome.wustl.edu	36	X	48203063	48203063	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	48203063	48203063	G	A	SNP	SLC38A5	NM_033518	human	genbank	54_36p	-1	validated	silent	c.1212	p.I404	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC38A5	92745	genome.wustl.edu	36	X	48209620	48209620	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	48209620	48209620	G	A	SNP	SLC38A5	NM_033518	human	genbank	54_36p	-1	validated	missense	c.353	p.A118V	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
PORCN	64840	genome.wustl.edu	36	X	48254630	48254630	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	48254630	48254630	T	G	SNP	PORCN	NM_203475	human	genbank	54_36p	1	reviewed	missense	c.140	p.L47W	1	NULL	HMMPfam_MBOAT	-	no_errors
WDR13	64743	genome.wustl.edu	36	X	48342974	48342974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	48342974	48342974	G	A	SNP	WDR13	NM_017883	human	genbank	54_36p	1	reviewed	missense	c.448	p.G150R	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
LOC648603	648603	genome.wustl.edu	36	X	48519176	48519176	+	RNA	SNP	G	A	A	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	48519176	48519176	G	A	SNP	LOC648603	XR_038238	human	genbank	54_36p	-1	model	rna	NULL	NULL	0	-	-	-	pseudogene
LOC648603	648603	genome.wustl.edu	36	X	48519651	48519652	+	RNA	DNP	CC	CC	AT	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	CC	CC	CC	AT	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	48519651	48519652	CC	AT	DNP	LOC648603	XR_038238	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
TIMM17B	10245	genome.wustl.edu	36	X	48636199	48636199	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	48636199	48636199	C	G	SNP	TIMM17B	NM_005834	human	genbank	54_36p	-1	validated	missense	c.358	p.G120R	1	HMMPfam_Tim17	HMMPfam_Tim17	-	no_errors
PPP1R3F	89801	genome.wustl.edu	36	X	49030032	49030032	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	49030032	49030032	A	T	SNP	PPP1R3F	NM_033215	human	genbank	54_36p	1	validated	missense	c.1936	p.M646L	0.13	NULL	HMMPfam_CBM_21	-	no_errors
CLCN5	1184	genome.wustl.edu	36	X	49737438	49737438	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	49737438	49737438	T	A	SNP	CLCN5	NM_000084	human	genbank	54_36p	1	reviewed	missense	c.785	p.V262E	1	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC"	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMSmart_SM00116,HMMPfam_CBS"	-	no_errors
AKAP4	8852	genome.wustl.edu	36	X	49845232	49845232	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	49845232	49845232	T	G	SNP	AKAP4	NM_003886	human	genbank	54_36p	-1	reviewed	missense	c.872	p.E291A	0.04	"HMMSmart_SM00807,HMMPfam_AKAP_110"	"HMMSmart_SM00807,HMMPfam_RII_binding_1,HMMPfam_AKAP_110"	-	no_errors
CCNB3	85417	genome.wustl.edu	36	X	50068608	50068608	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	50068608	50068608	G	T	SNP	CCNB3	NM_033031	human	genbank	54_36p	1	reviewed	missense	c.699	p.K233N	0.14	NULL	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385,HMMPfam_Cyclin_C"	-	no_errors
CCNB3	85417	genome.wustl.edu	36	X	50069949	50069949	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	50069949	50069949	T	A	SNP	CCNB3	NM_033031	human	genbank	54_36p	1	reviewed	silent	c.2040	p.V680	0	NULL	"HMMPfam_Cyclin_C,HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like"	-	no_errors
BMP15	9210	genome.wustl.edu	36	X	50676045	50676045	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	50676045	50676045	C	A	SNP	BMP15	NM_005448	human	genbank	54_36p	1	reviewed	missense	c.877	p.L293I	0.37	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB"	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
CXorf67	340602	genome.wustl.edu	36	X	51168014	51168014	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	51168014	51168014	T	C	SNP	LOC340602	NM_203407	human	genbank	54_36p	1	predicted	missense	c.1406	p.L469P	0	NULL	NULL	-	no_errors
MAGED1	9500	genome.wustl.edu	36	X	51655066	51655066	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	51655066	51655066	A	T	SNP	MAGED1	NM_001005333	human	genbank	54_36p	1	reviewed	nonsense	c.391	p.K131*	1	NULL	HMMPfam_MAGE	-	no_errors
KDM5C	8242	genome.wustl.edu	36	X	53247590	53247590	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	53247590	53247590	G	A	SNP	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	missense	c.1928	p.S643F	1	NULL	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1"	-	no_errors
IQSEC2	23096	genome.wustl.edu	36	X	53300626	53300626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	53300626	53300626	C	T	SNP	IQSEC2	NM_015075	human	genbank	54_36p	-1	validated	silent	c.597	p.A199	0.59	NULL	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53440141	53440141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	53440141	53440141	C	T	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.2684	p.R895H	1	"HMMPfam_SMC_N,superfamily_SSF52540"	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540"	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53449184	53449184	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	53449184	53449184	C	T	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.1877	p.R626H	1	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540"	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540"	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53449317	53449317	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	53449317	53449317	C	A	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.1744	p.D582Y	1	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540"	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540"	-	no_errors
HUWE1	10075	genome.wustl.edu	36	X	53594636	53594636	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	53594636	53594636	C	G	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	silent	c.9336	p.L3112	0.91	NULL	"HMMPfam_DUF908,superfamily_ARM repeat,HMMPfam_DUF913,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_WWE,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HUWE1	10075	genome.wustl.edu	36	X	53594876	53594876	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	53594876	53594876	C	A	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	splice_site	c.9097-1	e62-1	1	-	-	-	no_errors
WNK3	65267	genome.wustl.edu	36	X	54336306	54336306	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	54336306	54336306	G	C	SNP	WNK3	NM_020922	human	genbank	54_36p	-1	validated	missense	c.1873	p.Q625E	1	superfamily_Kinase_like	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
FGD1	2245	genome.wustl.edu	36	X	54489431	54489431	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	54489431	54489431	G	C	SNP	FGD1	NM_004463	human	genbank	54_36p	-1	reviewed	missense	c.2722	p.L908V	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE"	-	no_errors
PFKFB1	5207	genome.wustl.edu	36	X	55037157	55037157	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	55037157	55037157	T	G	SNP	PFKFB1	NM_002625	human	genbank	54_36p	-1	reviewed	silent	c.9	p.P3	0.92	NULL	"HMMPfam_6PF2K,superfamily_SSF52540,HMMPfam_PGAM,superfamily_SSF53254,PatternScan_PG_MUTASE"	-	no_errors
PAGE2	203569	genome.wustl.edu	36	X	55133768	55133768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	55133768	55133768	G	T	SNP	PAGE2	NM_207339	human	genbank	54_36p	1	provisional	missense	c.193	p.G65W	0	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
PAGE2	203569	genome.wustl.edu	36	X	55134516	55134516	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	55134516	55134516	G	T	SNP	PAGE2	NM_207339	human	genbank	54_36p	1	provisional	nonsense	c.220	p.E74*	0	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
MAGEH1	28986	genome.wustl.edu	36	X	55496032	55496032	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	55496032	55496032	C	T	SNP	MAGEH1	NM_014061	human	genbank	54_36p	1	reviewed	missense	c.500	p.A167V	0.95	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
USP51	158880	genome.wustl.edu	36	X	55530169	55530169	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	55530169	55530169	C	T	SNP	USP51	NM_201286	human	genbank	54_36p	-1	validated	silent	c.1929	p.V643	0	"superfamily_SSF54001,HMMPfam_UCH"	"HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
UBQLN2	29978	genome.wustl.edu	36	X	56607897	56607897	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	56607897	56607897	G	T	SNP	UBQLN2	NM_013444	human	genbank	54_36p	1	reviewed	missense	c.866	p.G289V	1	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,HMMSmart_SM00727,superfamily_ARM repeat,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165"	-	no_errors
SPIN3	169981	genome.wustl.edu	36	X	57037963	57037963	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	57037963	57037963	T	G	SNP	SPIN3	NM_001010862	human	genbank	54_36p	-1	validated	missense	c.143	p.N48T	1	NULL	HMMPfam_Spin-Ssty	-	no_errors
ARHGEF9	23229	genome.wustl.edu	36	X	62815163	62815163	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	62815163	62815163	C	A	SNP	ARHGEF9	NM_015185	human	genbank	54_36p	-1	validated	missense	c.576	p.W192C	1	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF"	"PatternScan_DH_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
ARHGEF9	23229	genome.wustl.edu	36	X	62833818	62833818	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	62833818	62833818	A	T	SNP	ARHGEF9	NM_015185	human	genbank	54_36p	-1	validated	missense	c.473	p.F158Y	1	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain"	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
FAM123B	139285	genome.wustl.edu	36	X	63327261	63327261	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	A	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sequenom_PCR_WGA		dbGAP	Illumina GAIIx	X	63327261	63327261	G	A	SNP	FAM123B	NM_152424	human	genbank	54_36p	-1	validated	silent	c.2631	p.G877	0.02	NULL	HMMPfam_WTX	-	no_errors
FAM123B	139285	genome.wustl.edu	36	X	63329595	63329595	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	63329595	63329595	C	A	SNP	FAM123B	NM_152424	human	genbank	54_36p	-1	validated	silent	c.297	p.L99	0.74	HMMPfam_WTX	HMMPfam_WTX	-	no_errors
ASB12	142689	genome.wustl.edu	36	X	63361903	63361903	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	63361903	63361903	T	C	SNP	ASB12	NM_130388	human	genbank	54_36p	-1	reviewed	missense	c.326	p.H109R	1	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SOCS_box"	-	no_errors
ASB12	142689	genome.wustl.edu	36	X	63361984	63361984	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	63361984	63361984	A	T	SNP	ASB12	NM_130388	human	genbank	54_36p	-1	reviewed	missense	c.245	p.V82D	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_SOCS_box,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
ZC4H2	55906	genome.wustl.edu	36	X	64058528	64058528	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	64058528	64058528	G	A	SNP	ZC4H2	NM_018684	human	genbank	54_36p	-1	provisional	missense	c.119	p.S40L	1	HMMPfam_zf-C4H2	HMMPfam_zf-C4H2	-	no_errors
LAS1L	81887	genome.wustl.edu	36	X	64660776	64660776	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	64660776	64660776	C	G	SNP	LAS1L	NM_031206	human	genbank	54_36p	-1	provisional	silent	c.1185	p.T395	1	NULL	HMMPfam_Las1	-	no_errors
HEPH	9843	genome.wustl.edu	36	X	65326359	65326359	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	65326359	65326359	C	T	SNP	HEPH	NM_014799	human	genbank	54_36p	1	reviewed	missense	c.116	p.A39V	1	superfamily_Cupredoxin	"superfamily_Cupredoxin,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2"	-	no_errors
HEPH	9843	genome.wustl.edu	36	X	65334323	65334323	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	65334323	65334323	C	T	SNP	HEPH	NM_014799	human	genbank	54_36p	1	reviewed	silent	c.774	p.A258	0.9	superfamily_Cupredoxin	"PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2,superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3"	-	no_errors
HEPH	9843	genome.wustl.edu	36	X	65334415	65334415	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	65334415	65334415	C	T	SNP	HEPH	NM_014799	human	genbank	54_36p	1	reviewed	missense	c.866	p.P289L	1	superfamily_Cupredoxin	"PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2,superfamily_Cupredoxin,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3"	-	no_errors
AR	367	genome.wustl.edu	36	X	66854056	66854056	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	66854056	66854056	T	A	SNP	AR	NM_000044	human	genbank	54_36p	1	reviewed	missense	c.2185	p.L729I	0.98	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMPfam_Androgen_recep,HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
OPHN1	4983	genome.wustl.edu	36	X	67200534	67200534	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	67200534	67200534	G	T	SNP	OPHN1	NM_002547	human	genbank	54_36p	-1	reviewed	missense	c.2045	p.T682N	0.92	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
FAM155B	27112	genome.wustl.edu	36	X	68666246	68666246	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	68666246	68666246	A	G	SNP	FAM155B	NM_015686	human	genbank	54_36p	1	validated	missense	c.1141	p.T381A	1	NULL	NULL	-	no_errors
EDA	1896	genome.wustl.edu	36	X	68753002	68753002	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	68753002	68753002	T	G	SNP	EDA	NM_001399	human	genbank	54_36p	1	reviewed	missense	c.125	p.L42R	1	NULL	"HMMPfam_Collagen,superfamily_TNF-like,HMMPfam_TNF"	-	no_errors
DGAT2L6	347516	genome.wustl.edu	36	X	69338542	69338542	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	69338542	69338542	G	T	SNP	DGAT2L6	NM_198512	human	genbank	54_36p	1	provisional	missense	c.550	p.V184L	1	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
AWAT1	158833	genome.wustl.edu	36	X	69372713	69372713	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	69372713	69372713	C	T	SNP	AWAT1	NM_001013579	human	genbank	54_36p	1	provisional	missense	c.254	p.T85M	0.99	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
ARR3	407	genome.wustl.edu	36	X	69413276	69413276	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	69413276	69413276	C	T	SNP	ARR3	NM_004312	human	genbank	54_36p	1	validated	silent	c.438	p.F146	1	"superfamily_E set domains,HMMPfam_Arrestin_N"	"superfamily_E set domains,HMMPfam_Arrestin_N,PatternScan_ARRESTINS,HMMPfam_Arrestin_C"	-	no_errors
RAB41	347517	genome.wustl.edu	36	X	69418889	69418889	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	69418889	69418889	A	G	SNP	RAB41	NM_001032726	human	genbank	54_36p	1	provisional	missense	c.97	p.K33E	0.31	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMPfam_Ras,HMMSmart_SM00175"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
KIF4A	24137	genome.wustl.edu	36	X	69490214	69490214	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	69490214	69490214	A	G	SNP	KIF4A	NM_012310	human	genbank	54_36p	1	validated	silent	c.1506	p.P502	0.44	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
MED12	9968	genome.wustl.edu	36	X	70269528	70269528	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	70269528	70269528	C	G	SNP	MED12	NM_005120	human	genbank	54_36p	1	validated	missense	c.4524	p.H1508Q	1	NULL	HMMPfam_Med12	-	no_errors
NLGN3	54413	genome.wustl.edu	36	X	70304178	70304178	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	70304178	70304178	C	G	SNP	NLGN3	NM_018977	human	genbank	54_36p	1	validated	nonsense	c.1446	p.Y482*	1	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2"	-	no_errors
TAF1	6872	genome.wustl.edu	36	X	70519672	70519672	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	70519672	70519672	G	A	SNP	TAF1	NM_004606	human	genbank	54_36p	1	reviewed	missense	c.1940	p.G647D	1	NULL	"HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
TAF1	6872	genome.wustl.edu	36	X	70544593	70544593	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	70544593	70544593	C	G	SNP	TAF1	NM_004606	human	genbank	54_36p	1	reviewed	missense	c.4311	p.D1437E	1	"HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1"	"HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_TBP-binding,superfamily_TAF_II_230,PatternScan_BROMODOMAIN_1"	-	no_errors
TAF1	6872	genome.wustl.edu	36	X	70596264	70596264	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	70596264	70596264	A	C	SNP	TAF1	NM_004606	human	genbank	54_36p	1	reviewed	missense	c.5262	p.E1754D	1	NULL	"HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_TBP-binding,superfamily_TAF_II_230,PatternScan_BROMODOMAIN_1"	-	no_errors
ACRC	93953	genome.wustl.edu	36	X	70740470	70740470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	70740470	70740470	C	T	SNP	ACRC	NM_052957	human	genbank	54_36p	1	validated	silent	c.618	p.D206	0.04	NULL	"HMMSmart_SM00731,HMMPfam_SprT-like"	-	no_errors
CXCR3	2833	genome.wustl.edu	36	X	70754028	70754028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	70754028	70754028	C	T	SNP	CXCR3	NM_001504	human	genbank	54_36p	-1	reviewed	missense	c.19	p.D7N	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RGAG4	340526	genome.wustl.edu	36	X	71267391	71267391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	71267391	71267391	C	T	SNP	RGAG4	NM_001024455	human	genbank	54_36p	-1	provisional	missense	c.725	p.R242H	0.88	HMMPfam_Retrotrans_gag	HMMPfam_Retrotrans_gag	-	no_errors
PHKA1	5255	genome.wustl.edu	36	X	71747725	71747725	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	71747725	71747725	G	A	SNP	PHKA1	NM_002637	human	genbank	54_36p	-1	validated	missense	c.2404	p.R802W	0.07	HMMPfam_PHK_AB	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	-	no_errors
LOC728748	728748	genome.wustl.edu	36	X	73536032	73536032	+	RNA	SNP	T	T	C	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	73536032	73536032	T	C	SNP	LOC728748	XR_037583	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
KIAA2022	340533	genome.wustl.edu	36	X	73876714	73876714	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	73876714	73876714	T	C	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	missense	c.4403	p.E1468G	1	NULL	NULL	-	no_errors
KIAA2022	340533	genome.wustl.edu	36	X	73880405	73880405	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	73880405	73880405	C	A	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	missense	c.712	p.A238S	1	NULL	NULL	-	no_errors
KIAA2022	340533	genome.wustl.edu	36	X	73882145	73882145	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	73882145	73882145	C	T	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	silent	c.66	p.G22	1	NULL	NULL	-	no_errors
MAGEE2	139599	genome.wustl.edu	36	X	74920217	74920228	+	In_Frame_Del	DEL	AAGCTCATATTC	AAGCTCATATTC	-	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	AAGCTCATATTC	AAGCTCATATTC	AAGCTCATATTC	-	AAGCTCATATTC	AAGCTCATATTC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	74920217	74920228	AAGCTCATATTC	-	DEL	MAGEE2	NM_138703	human	genbank	54_36p	-1	validated	in_frame_del	c.1395_1384	p.EYEL462in_frame_del	0.994:0.996:0.999:1.000:1.000:0.999:0.998:0.999:0.998:0.998:0.998:0.997	HMMPfam_MAGE	HMMPfam_MAGE	"(deletion:cds_exon[74920040,74921611])"	no_errors
MAGEE1	57692	genome.wustl.edu	36	X	75566885	75566885	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	75566885	75566885	G	C	SNP	MAGEE1	NM_020932	human	genbank	54_36p	1	validated	missense	c.2158	p.E720Q	0.01	NULL	HMMPfam_MAGE	-	no_errors
LPAR4	2846	genome.wustl.edu	36	X	77897606	77897606	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	77897606	77897606	G	A	SNP	LPAR4	NM_005296	human	genbank	54_36p	1	reviewed	missense	c.584	p.R195H	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LPAR4	2846	genome.wustl.edu	36	X	77897941	77897941	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	77897941	77897941	G	C	SNP	LPAR4	NM_005296	human	genbank	54_36p	1	reviewed	missense	c.919	p.D307H	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
LPAR4	2846	genome.wustl.edu	36	X	77897941	77897941	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	77897941	77897941	G	T	SNP	LPAR4	NM_005296	human	genbank	54_36p	1	reviewed	missense	c.919	p.D307Y	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
P2RY10	27334	genome.wustl.edu	36	X	78103370	78103370	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	78103370	78103370	C	A	SNP	P2RY10	NM_014499	human	genbank	54_36p	1	reviewed	missense	c.697	p.Q233K	0.86	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
LOC727874	727874	genome.wustl.edu	36	X	79703680	79703680	+	RNA	SNP	C	C	T	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	79703680	79703680	C	T	SNP	LOC727874	XR_042356	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
BRWD3	254065	genome.wustl.edu	36	X	79823651	79823651	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	79823651	79823651	G	C	SNP	BRWD3	NM_153252	human	genbank	54_36p	-1	validated	nonsense	c.4499	p.S1500*	1	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
SH3BGRL	6451	genome.wustl.edu	36	X	80419192	80419192	+	Silent	SNP	A	G	G	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	80419192	80419192	A	G	SNP	SH3BGRL	NM_003022	human	genbank	54_36p	1	validated	silent	c.99	p.G33	1	"HMMPfam_SH3BGR,superfamily_Thioredoxin-like"	"HMMPfam_SH3BGR,superfamily_Thioredoxin-like"	-	no_errors
CYLC1	1538	genome.wustl.edu	36	X	83014899	83014899	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	83014899	83014899	A	T	SNP	CYLC1	NM_021118	human	genbank	54_36p	1	provisional	missense	c.527	p.K176I	0.01	NULL	NULL	-	no_errors
CYLC1	1538	genome.wustl.edu	36	X	83015558	83015558	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	83015558	83015558	A	C	SNP	CYLC1	NM_021118	human	genbank	54_36p	1	provisional	missense	c.1186	p.K396Q	0.99	NULL	NULL	-	no_errors
ZNF711	7552	genome.wustl.edu	36	X	84406028	84406028	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	84406028	84406028	G	A	SNP	ZNF711	NM_021998	human	genbank	54_36p	1	reviewed	silent	c.714	p.G238	1	HMMPfam_Zfx_Zfy_act	"HMMPfam_Zfx_Zfy_act,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF711	7552	genome.wustl.edu	36	X	84412933	84412933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	84412933	84412933	C	A	SNP	ZNF711	NM_021998	human	genbank	54_36p	1	reviewed	missense	c.1729	p.L577I	1	"HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_Zfx_Zfy_act,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF711	7552	genome.wustl.edu	36	X	84413035	84413035	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	84413035	84413035	T	C	SNP	ZNF711	NM_021998	human	genbank	54_36p	1	reviewed	missense	c.1831	p.S611P	1	"HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_Zfx_Zfy_act,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
LOC441505	441505	genome.wustl.edu	36	X	85227167	85227167	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	X	85227167	85227167	C	G	SNP	LOC441505	XR_016229	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
DACH2	117154	genome.wustl.edu	36	X	85957759	85957759	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	85957759	85957759	G	T	SNP	DACH2	NM_053281	human	genbank	54_36p	1	reviewed	splice_site	c.1750+1	e11+1	1	-	-	-	no_errors
KLHL4	56062	genome.wustl.edu	36	X	86759705	86759705	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	86759705	86759705	C	A	SNP	KLHL4	NM_057162	human	genbank	54_36p	1	reviewed	missense	c.842	p.P281H	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
TGIF2LX	90316	genome.wustl.edu	36	X	89063758	89063758	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	89063758	89063758	C	T	SNP	TGIF2LX	NM_138960	human	genbank	54_36p	1	reviewed	silent	c.18	p.D6	0	NULL	"PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
PABPC5	140886	genome.wustl.edu	36	X	90577669	90577669	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	90577669	90577669	G	C	SNP	PABPC5	NM_080832	human	genbank	54_36p	1	validated	missense	c.437	p.G146A	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1"	"HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD,HMMSmart_SM00361"	-	no_errors
LOC401602	401602	genome.wustl.edu	36	X	92364563	92364563	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	92364563	92364563	G	C	SNP	LOC401602	XR_016272	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.57	-	-	-	pseudogene
LOC401602	401602	genome.wustl.edu	36	X	92365726	92365726	+	RNA	SNP	T	T	A	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	92365726	92365726	T	A	SNP	LOC401602	XR_016272	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC643310	643310	genome.wustl.edu	36	X	92429618	92429618	+	RNA	SNP	G	G	A	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	92429618	92429618	G	A	SNP	LOC643310	XR_038903	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC643310	643310	genome.wustl.edu	36	X	92430081	92430081	+	RNA	SNP	A	A	T	novel	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	92430081	92430081	A	T	SNP	LOC643310	XR_038903	human	genbank	54_36p	-1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC100132243	100132243	genome.wustl.edu	36	X	9339130	9339130	+	RNA	SNP	G	G	C	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	9339130	9339130	G	C	SNP	LOC100132243	XR_037396	human	genbank	54_36p	1	model	rna	NULL	NULL	1	-	-	-	pseudogene
LOC643486	643486	genome.wustl.edu	36	X	95479221	95479221	+	RNA	SNP	C	C	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	95479221	95479221	C	G	SNP	LOC643486	NR_003539	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.97	-	-	-	pseudogene
RPA4	29935	genome.wustl.edu	36	X	96026140	96026140	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	X	96026140	96026140	G	T	SNP	RPA4	NM_013347	human	genbank	54_36p	1	reviewed	missense	c.175	p.V59L	0	superfamily_Nucleic_acid_OB	"superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,HMMPfam_RPA_C,superfamily_SSF46785"	-	no_errors
DIAPH2	1730	genome.wustl.edu	36	X	96072406	96072406	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	96072406	96072406	A	T	SNP	DIAPH2	NM_006729	human	genbank	54_36p	1	reviewed	missense	c.997	p.I333L	1	HMMPfam_Drf_FH3	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,HMMPfam_Drf_DAD"	-	no_errors
DIAPH2	1730	genome.wustl.edu	36	X	96283423	96283423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	96283423	96283423	T	C	SNP	DIAPH2	NM_006729	human	genbank	54_36p	1	reviewed	missense	c.2693	p.L898P	1	"HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	"HMMSmart_SM00498,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	-	no_errors
SHROOM2	357	genome.wustl.edu	36	X	9860271	9860271	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	9860271	9860271	G	C	SNP	SHROOM2	NM_001649	human	genbank	54_36p	1	reviewed	missense	c.2948	p.S983T	0	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2"	-	no_errors
PCDH19	57526	genome.wustl.edu	36	X	99438459	99438459	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	99438459	99438459	G	A	SNP	PCDH19	NM_001105243	human	genbank	54_36p	-1	validated	silent	c.2778	p.P926	1	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDH19	57526	genome.wustl.edu	36	X	99549239	99549239	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	99549239	99549239	T	A	SNP	PCDH19	NM_001105243	human	genbank	54_36p	-1	validated	missense	c.1013	p.D338V	1	"HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
TSPAN6	7105	genome.wustl.edu	36	X	99775091	99775091	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	99775091	99775091	A	C	SNP	TSPAN6	NM_003270	human	genbank	54_36p	-1	reviewed	silent	c.552	p.T184	0.29	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
SYTL4	94121	genome.wustl.edu	36	X	99828803	99828803	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	99828803	99828803	C	G	SNP	SYTL4	NM_080737	human	genbank	54_36p	-1	validated	missense	c.1101	p.E367D	0.12	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
WWC3	55841	genome.wustl.edu	36	X	9995469	9995469	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	X	9995469	9995469	C	T	SNP	WWC3	NM_015691	human	genbank	54_36p	1	validated	silent	c.159	p.A53	0.42	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
ENSG00000183704	0	genome.wustl.edu	36	Y	11960742	11960742	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	Y	11960742	11960742	G	A	SNP	ENSG00000183704	ENST00000331172	human	ensembl	54_36p	-1	known	nonsense	c.535	p.R179*	0.04	NULL	NULL	-	no_stop_codon
EVI5	7813	genome.wustl.edu	36	1	92941593	92941594	+	Missense_Mutation	DNP	AG	AG	GA	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	AG	AG	AG	GA	AG	AG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	92941593	92941594	AG	GA	DNP	EVI5	NM_005665	human	genbank	54_36p	-1	validated	missense	c.643_642	p.F215L	1.000:0.986	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
L3MBTL2	83746	genome.wustl.edu	36	22	39935678	39935679	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	GG	GG	GG	AA	GG	GG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	22	39935678	39935679	GG	AA	DNP	L3MBTL2	NM_031488	human	genbank	54_36p	1	validated	missense	c.57_58	p.E20K	1.000:1.000	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT"	-	no_errors
LIMS1	3987	genome.wustl.edu	36	2	108642556	108642557	+	Nonsense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	TG	TG	TG	CT	TG	TG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	108642556	108642557	TG	CT	DNP	LIMS1	NM_004987	human	genbank	54_36p	1	reviewed	nonsense	c.60_61	p.EK21*	0.773:1.000	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
NDNL2	56160	genome.wustl.edu	36	15	27348490	27348491	+	Missense_Mutation	DNP	TC	TC	AT	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	TC	TC	TC	AT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	27348490	27348491	TC	AT	DNP	NDNL2	NM_138704	human	genbank	54_36p	-1	reviewed	missense	c.712_711	p.I238L	0.940:0.938	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
PELI1	57162	genome.wustl.edu	36	2	64175553	64175554	+	Missense_Mutation	DNP	TC	TC	AT	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	TC	TC	TC	AT	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	64175553	64175554	TC	AT	DNP	PELI1	NM_020651	human	genbank	54_36p	-1	validated	missense	c.1044_1043	p.G348D	1.000:1.000	HMMPfam_Pellino	HMMPfam_Pellino	-	no_errors
PHLPP2	23035	genome.wustl.edu	36	16	70294104	70294105	+	Missense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	TC	TC	TC	AA	TC	TC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	70294104	70294105	TC	AA	DNP	PHLPPL	NM_015020	human	genbank	54_36p	-1	validated	missense	c.316_315	p.QI105HF	1.000:1.000	NULL	"superfamily_PH domain-like,superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C"	-	no_errors
PRSS27	83886	genome.wustl.edu	36	16	2704190	2704191	+	Nonsense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	16	2704190	2704191	CC	AG	DNP	PRSS27	NM_031948	human	genbank	54_36p	-1	validated	nonsense	c.385_384	p.EL129*	0.985:0.986	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
SLC39A11	201266	genome.wustl.edu	36	17	68596423	68596424	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	68596423	68596424	CC	AG	DNP	SLC39A11	NM_139177	human	genbank	54_36p	-1	provisional	missense	c.76_75	p.A26S	0.997:0.971	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
THBS1	7057	genome.wustl.edu	36	15	37662126	37662127	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	GA	GA	GA	TT	GA	GA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	15	37662126	37662127	GA	TT	DNP	THBS1	NM_003246	human	genbank	54_36p	1	reviewed	missense	c.508_509	p.D170F	1.000:1.000	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases"	###############################################################################################################################################################################################################################################################	-	no_errors
ZNF295	49854	genome.wustl.edu	36	21	42287270	42287271	+	Nonsense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	CC	CC	CC	AG	CC	CC	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	42287270	42287271	CC	AG	DNP	ZNF295	NM_001098402	human	genbank	54_36p	-1	validated	nonsense	c.4_3	p.MEG1I*	1.000:1.000	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CCDC136	64753	genome.wustl.edu	36	7	128237616	128237635	+	In_Frame_Del	DEL	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	TGTAA	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	TGTAA	ATTCCAAATTGGCTAAGTCC	ATTCCAAATTGGCTAAGTCC	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	128237616	128237635	ATTCCAAATTGGCTAAGTCC	TCTAA	DEL	CCDC136	NM_022742	human	genbank	54_36p	1	validated	in_frame_del	c.1988_2007	p.DSKLAKSSKC663in_frame_delVQM	0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.258:0.264:0.450:0.488:0.616:0.617:0.614:0.565	NULL	"superfamily_Prefoldin,superfamily_Spectrin repeat"	"(deletion:cds_exon[128237429,128237656])"	no_errors
MFAP3L	9848	genome.wustl.edu	36	4	171163500	171163525	+	In_Frame_Del	DEL	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	GTTAGTTA	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	GTTAGTTA	GTGCTGTTAGTCACACTCTTAGCGGT	GTGCTGTTAGTCACACTCTTAGCGGT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	4	171163500	171163525	GTGCTGTTAGTCACACTCTTAGCGGT	GTTAGTTA	DEL	MFAP3L	NM_021647	human	genbank	54_36p	-1	validated	in_frame_del	c.104_79	p.TAKSVTNSTLNG27in_frame_delFKW	1.000:1.000:1.000:0.998:0.944:0.668:0.633:0.579:0.285:0.317:0.303:0.216:0.167:0.080:0.025:0.015:0.010:0.004:0.006:0.020:0.160:0.416:0.413:0.188:0.181:0.055	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"(deletion:cds_exon[171163306,171163603])"	no_errors
SLC13A1	6561	genome.wustl.edu	36	7	122595801	122595803	+	Frame_Shift_Del	DEL	CTG	CTG	AT	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	CTG	CTG	CTG	AT	CTG	CTG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	7	122595801	122595803	CTG	AT	DEL	SLC13A1	NM_022444	human	genbank	54_36p	-1	validated	frame_shift_del	c.604_602	p.P201fs	0.977:0.982:0.976	HMMPfam_Na_sulph_symp	"HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE"	"(deletion:cds_exon[122595794,122595851])"	no_errors
SLC39A6	25800	genome.wustl.edu	36	18	31956136	31956137	+	Frame_Shift_Del	DEL	TA	TA	-	novel	Unknown	TCGA-25-1316-01A-01W-0494-09	TCGA-25-1316-10A-01W-0494-09	TA	TA	TA	-	TA	TA	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	18	31956136	31956137	TA	-	DEL	SLC39A6	NM_012319	human	genbank	54_36p	-1	validated	frame_shift_del	c.1236_1235	p.I412fs	0.981:0.972	HMMPfam_Zip	HMMPfam_Zip	"(deletion:cds_exon[31956013,31956231])"	no_errors
ACE2	59272	hgsc.bcm.edu	36	X	15495857	15495857	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	15495857	15495857	T	A	SNP	ACE2	NM_021804	human	genbank	54_36p	-1	reviewed	missense	c.1910	p.D637V	0.96	NULL	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ACSL4	2182	hgsc.bcm.edu	36	X	108810946	108810946	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	108810946	108810946	G	T	SNP	ACSL4	NM_022977	human	genbank	54_36p	-1	reviewed	missense	c.715	p.P239T	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
AFF2	2334	hgsc.bcm.edu	36	X	147856866	147856866	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	147856866	147856866	G	T	SNP	AFF2	NM_002025	human	genbank	54_36p	1	validated	missense	c.3217	p.D1073Y	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AGTR2	186	hgsc.bcm.edu	36	X	115218213	115218213	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	115218213	115218213	C	A	SNP	AGTR2	NM_000686	human	genbank	54_36p	1	validated	missense	c.652	p.L218I	0.72	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
AGTR2	186	hgsc.bcm.edu	36	X	115218610	115218610	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	115218610	115218610	G	A	SNP	AGTR2	NM_000686	human	genbank	54_36p	1	validated	missense	c.1049	p.R350Q	0.01	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
AMOT	154796	hgsc.bcm.edu	36	X	111908519	111908519	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	111908519	111908519	C	G	SNP	AMOT	NM_133265	human	genbank	54_36p	-1	reviewed	missense	c.1960	p.E654Q	1	NULL	NULL	-	no_errors
AMOT	154796	hgsc.bcm.edu	36	X	111910973	111910973	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	111910973	111910973	T	G	SNP	AMOT	NM_133265	human	genbank	54_36p	-1	reviewed	missense	c.1043	p.E348A	1	NULL	NULL	-	no_errors
ARHGAP6	395	hgsc.bcm.edu	36	X	11097617	11097617	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	11097617	11097617	G	A	SNP	ARHGAP6	NM_013427	human	genbank	54_36p	-1	reviewed	missense	c.1738	p.R580W	1	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324"	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGEF9	23229	hgsc.bcm.edu	36	X	62842964	62842964	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	62842964	62842964	C	A	SNP	ARHGEF9	NM_015185	human	genbank	54_36p	-1	validated	missense	c.280	p.G94W	1	"superfamily_SH3,superfamily_DH-domain"	"PatternScan_DH_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
ARMCX2	9823	hgsc.bcm.edu	36	X	100798157	100798157	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	100798157	100798157	G	C	SNP	ARMCX2	NM_014782	human	genbank	54_36p	-1	reviewed	silent	c.1074	p.T358	0.95	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_DUF634"	-	no_errors
ARMCX2	9823	hgsc.bcm.edu	36	X	100798969	100798969	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	100798969	100798969	A	C	SNP	ARMCX2	NM_014782	human	genbank	54_36p	-1	reviewed	missense	c.262	p.S88A	0.03	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
ARR3	407	hgsc.bcm.edu	36	X	69406460	69406460	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	69406460	69406460	G	C	SNP	ARR3	NM_004312	human	genbank	54_36p	1	validated	missense	c.82	p.D28H	1	"superfamily_E set domains,HMMPfam_Arrestin_N"	"superfamily_E set domains,HMMPfam_Arrestin_N,PatternScan_ARRESTINS,HMMPfam_Arrestin_C"	-	no_errors
ARSF	416	hgsc.bcm.edu	36	X	3012505	3012505	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	3012505	3012505	G	A	SNP	ARSF	NM_004042	human	genbank	54_36p	1	reviewed	missense	c.628	p.G210S	0	"superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase"	"superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2"	-	no_errors
ARSF	416	hgsc.bcm.edu	36	X	3029221	3029221	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	3029221	3029221	G	A	SNP	ARSF	NM_004042	human	genbank	54_36p	1	reviewed	missense	c.1061	p.R354Q	0	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like"	"HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline phosphatase-like"	-	no_errors
ASB11	140456	hgsc.bcm.edu	36	X	15215980	15215980	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	15215980	15215980	G	T	SNP	ASB11	NM_080873	human	genbank	54_36p	-1	reviewed	missense	c.791	p.A264E	0.94	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SOCS_box"	-	no_errors
ATP11C	286410	hgsc.bcm.edu	36	X	138671799	138671799	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	138671799	138671799	T	A	SNP	ATP11C	NM_173694	human	genbank	54_36p	-1	validated	missense	c.2636	p.Y879F	1	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ATP1B4	23439	hgsc.bcm.edu	36	X	119380053	119380053	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	119380053	119380053	T	G	SNP	ATP1B4	NM_012069	human	genbank	54_36p	1	validated	missense	c.2	p.M1R	1	NULL	"PatternScan_ATPASE_NA_K_BETA_1,HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_2"	-	no_errors
ATP6AP1	537	hgsc.bcm.edu	36	X	153315926	153315926	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	153315926	153315926	T	G	SNP	ATP6AP1	NM_001183	human	genbank	54_36p	1	reviewed	missense	c.863	p.L288R	0.01	HMMPfam_ATP-synt_S1	HMMPfam_ATP-synt_S1	-	no_errors
ATRX	546	hgsc.bcm.edu	36	X	76664503	76664503	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	76664503	76664503	T	C	SNP	ATRX	NM_000489	human	genbank	54_36p	-1	reviewed	missense	c.6869	p.N2290S	1	NULL	"superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
ATRX	546	hgsc.bcm.edu	36	X	76805671	76805671	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	76805671	76805671	A	-	DEL	ATRX	NM_000489	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3976	p.S1326fs	1	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"(deletion:cds_exon[76805527,76805703])"	no_errors
AVPR2	554	hgsc.bcm.edu	36	X	152824648	152824657	+	Frame_Shift_Del	DEL	CCTTCTCGCT	CCTTCTCGCT	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	CCTTCTCGCT	CCTTCTCGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	152824648	152824657	CCTTCTCGCT	-	DEL	AVPR2	NM_000054	human	genbank	54_36p	1	reviewed	frame_shift_del	c.494_503	p.L168fs	0.995:0.987:0.985:0.993:0.993:0.995:0.984:0.670:0.663:0.638	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[152824180,152825064])"	no_errors
AWAT1	158833	hgsc.bcm.edu	36	X	69376481	69376481	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	69376481	69376481	G	A	SNP	AWAT1	NM_001013579	human	genbank	54_36p	1	provisional	silent	c.804	p.L268	1	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
BCORL1	63035	hgsc.bcm.edu	36	X	128977166	128977166	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	128977166	128977166	A	G	SNP	BCORL1	NM_021946	human	genbank	54_36p	1	validated	missense	c.2737	p.K913E	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
BEND2	139105	hgsc.bcm.edu	36	X	18123369	18123369	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	18123369	18123369	G	C	SNP	BEND2	NM_153346	human	genbank	54_36p	-1	validated	missense	c.1148	p.A383G	0	NULL	HMMPfam_BEN	-	no_errors
BRWD3	254065	hgsc.bcm.edu	36	X	79875622	79875622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	79875622	79875622	G	A	SNP	BRWD3	NM_153252	human	genbank	54_36p	-1	validated	silent	c.1116	p.N372	1	"superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
CACNA1F	778	hgsc.bcm.edu	36	X	48971729	48971729	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	48971729	48971729	G	C	SNP	CACNA1F	NM_005183	human	genbank	54_36p	-1	reviewed	missense	c.942	p.D314E	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CD99L2	83692	hgsc.bcm.edu	36	X	149689474	149689474	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	149689474	149689474	C	T	SNP	CD99L2	NM_031462	human	genbank	54_36p	-1	validated	missense	c.682	p.G228R	1	NULL	NULL	-	no_errors
CFP	5199	hgsc.bcm.edu	36	X	47374178	47374178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	47374178	47374178	C	T	SNP	CFP	NM_002621	human	genbank	54_36p	-1	reviewed	missense	c.10	p.E4K	0	NULL	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1"	-	no_errors
CLCN4	1183	hgsc.bcm.edu	36	X	10113170	10113170	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	X	10113170	10113170	T	A	SNP	CLCN4	NM_001830	human	genbank	54_36p	1	reviewed	missense	c.98	p.I33N	1	NULL	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMSmart_SM00116,HMMPfam_CBS"	-	no_errors
CLCN4	1183	hgsc.bcm.edu	36	X	10126092	10126092	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	10126092	10126092	C	A	SNP	CLCN4	NM_001830	human	genbank	54_36p	1	reviewed	silent	c.546	p.G182	0.88	"HMMPfam_Voltage_CLC,superfamily_Clc chloride channel"	"HMMPfam_CBS,HMMSmart_SM00116,HMMPfam_Voltage_CLC,superfamily_Clc chloride channel,superfamily_CBS-domain"	-	no_errors
COL4A6	1288	hgsc.bcm.edu	36	X	107292893	107292893	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	107292893	107292893	T	C	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	silent	c.4104	p.Q1368	0.06	HMMPfam_Collagen	"HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like"	-	no_errors
CPXCR1	53336	hgsc.bcm.edu	36	X	87895124	87895124	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	87895124	87895124	A	T	SNP	CPXCR1	NM_033048	human	genbank	54_36p	1	validated	missense	c.53	p.N18I	0.33	NULL	HMMSmart_ZnF_C2H2	-	no_errors
CPXCR1	53336	hgsc.bcm.edu	36	X	87895687	87895687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	87895687	87895687	C	T	SNP	CPXCR1	NM_033048	human	genbank	54_36p	1	validated	missense	c.616	p.R206C	0	NULL	HMMSmart_ZnF_C2H2	-	no_errors
CTPS2	56474	hgsc.bcm.edu	36	X	16545276	16545276	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	16545276	16545276	C	G	SNP	CTPS2	NM_019857	human	genbank	54_36p	-1	reviewed	silent	c.1464	p.L488	0.99	"superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_CTP_synth_N,superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase"	-	no_errors
CXorf21	80231	hgsc.bcm.edu	36	X	30487936	30487936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	30487936	30487936	C	T	SNP	CXorf21	NM_025159	human	genbank	54_36p	-1	predicted	missense	c.458	p.G153D	1	NULL	PatternScan_ADH_SHORT	-	no_errors
CXorf22	170063	hgsc.bcm.edu	36	X	35895718	35895718	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	35895718	35895718	C	T	SNP	CXorf22	NM_152632	human	genbank	54_36p	1	validated	silent	c.1662	p.R554	0	NULL	NULL	-	no_errors
CYLC1	1538	hgsc.bcm.edu	36	X	83015076	83015076	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	83015076	83015076	C	A	SNP	CYLC1	NM_021118	human	genbank	54_36p	1	provisional	nonsense	c.704	p.S235*	0	NULL	NULL	-	no_errors
CYLC1	1538	hgsc.bcm.edu	36	X	83015354	83015354	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	83015354	83015354	A	T	SNP	CYLC1	NM_021118	human	genbank	54_36p	1	provisional	nonsense	c.982	p.K328*	0.37	NULL	NULL	-	no_errors
DGKK	139189	hgsc.bcm.edu	36	X	50184032	50184033	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	50184032	50184033	-	A	INS	DGKK	ENST00000376025	human	ensembl	54_36p	-1	known	frame_shift_ins	c.710_709	p.Y237fs	0.981:0.994	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
DMD	1756	hgsc.bcm.edu	36	X	31049933	31049933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	31049933	31049933	C	A	SNP	DMD	NM_004021	human	genbank	54_36p	-1	reviewed	missense	c.3670	p.D1224Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DMD	1756	hgsc.bcm.edu	36	X	31407088	31407088	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	31407088	31407088	C	T	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	silent	c.8601	p.E2867	1	"superfamily_Spectrin repeat,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	-	no_errors
DOCK11	139818	hgsc.bcm.edu	36	X	117615509	117615525	+	Frame_Shift_Del	DEL	GCTACTTGAATCTGAAT	GCTACTTGAATCTGAAT	-	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	GCTACTTGAATCTGAAT	GCTACTTGAATCTGAAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	117615509	117615525	GCTACTTGAATCTGAAT	-	DEL	DOCK11	NM_144658	human	genbank	54_36p	1	validated	frame_shift_del	c.2351_2367	p.Y785fs	1.000:0.982:1.000:1.000:1.000:1.000:1.000:0.992:0.988:0.984:0.975:0.943:0.950:0.956:0.987:0.995:0.999	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto"	"(deletion:cds_exon[117615422,117615543])"	no_errors
DRP2	1821	hgsc.bcm.edu	36	X	100396880	100396880	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	100396880	100396880	C	T	SNP	DRP2	NM_001939	human	genbank	54_36p	1	validated	silent	c.2232	p.S744	0.99	NULL	"HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
EBP	10682	hgsc.bcm.edu	36	X	48267264	48267264	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	48267264	48267264	C	T	SNP	EBP	NM_006579	human	genbank	54_36p	1	reviewed	missense	c.161	p.A54V	0.95	HMMPfam_EBP	HMMPfam_EBP	-	no_errors
EDA	1896	hgsc.bcm.edu	36	X	68753061	68753061	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	68753061	68753061	C	A	SNP	EDA	NM_001399	human	genbank	54_36p	1	reviewed	missense	c.184	p.L62I	1	NULL	"HMMPfam_Collagen,superfamily_TNF-like,HMMPfam_TNF"	-	no_errors
EFHC2	80258	hgsc.bcm.edu	36	X	44005473	44005473	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	44005473	44005473	C	T	SNP	EFHC2	NM_025184	human	genbank	54_36p	-1	validated	missense	c.398	p.R133H	1	"HMMSmart_SM00676,HMMPfam_DUF1126"	"HMMSmart_SM00676,HMMPfam_DUF1126,superfamily_EF-hand"	-	no_errors
EIF2S3	1968	hgsc.bcm.edu	36	X	23996091	23996091	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	23996091	23996091	A	T	SNP	EIF2S3	NM_001415	human	genbank	54_36p	1	validated	silent	c.957	p.V319	0.86	"superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_eIF2_C,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"	-	no_errors
ERCC6L	54821	hgsc.bcm.edu	36	X	71341605	71341605	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	71341605	71341605	T	G	SNP	ERCC6L	NM_017669	human	genbank	54_36p	-1	validated	missense	c.3737	p.Q1246P	1	NULL	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
ERCC6L	54821	hgsc.bcm.edu	36	X	71342127	71342127	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	71342127	71342127	C	G	SNP	ERCC6L	NM_017669	human	genbank	54_36p	-1	validated	missense	c.3215	p.G1072A	0	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540"	-	no_errors
ERCC6L	54821	hgsc.bcm.edu	36	X	71343000	71343000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	71343000	71343000	G	A	SNP	ERCC6L	NM_017669	human	genbank	54_36p	-1	validated	missense	c.2342	p.P781L	0	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540"	-	no_errors
F8	2157	hgsc.bcm.edu	36	X	153838448	153838448	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	153838448	153838448	G	T	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	missense	c.1730	p.S577Y	1	superfamily_Cupredoxins	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
FAM123B	139285	hgsc.bcm.edu	36	X	63329263	63329263	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	63329263	63329263	G	A	SNP	FAM123B	NM_152424	human	genbank	54_36p	-1	validated	missense	c.629	p.S210L	0.11	HMMPfam_WTX	HMMPfam_WTX	-	no_errors
FAM47B	170062	hgsc.bcm.edu	36	X	34871989	34871989	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	34871989	34871989	C	A	SNP	FAM47B	NM_152631	human	genbank	54_36p	1	predicted	missense	c.1120	p.L374I	0.05	NULL	NULL	-	no_errors
FAM47B	170062	hgsc.bcm.edu	36	X	34872017	34872017	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	34872017	34872017	G	A	SNP	FAM47B	NM_152631	human	genbank	54_36p	1	predicted	nonsense	c.1148	p.W383*	0	NULL	NULL	-	no_errors
FOXP3	50943	hgsc.bcm.edu	36	X	49000922	49000922	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	49000922	49000922	C	T	SNP	FOXP3	NM_014009	human	genbank	54_36p	-1	reviewed	silent	c.360	p.V120	0.99	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
G6PD	2539	hgsc.bcm.edu	36	X	153413423	153413423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	153413423	153413423	G	A	SNP	G6PD	NM_000402	human	genbank	54_36p	-1	reviewed	missense	c.1624	p.P542S	1	NULL	"superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C"	-	no_errors
G6PD	2539	hgsc.bcm.edu	36	X	153413454	153413454	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	153413454	153413454	G	C	SNP	G6PD	NM_000402	human	genbank	54_36p	-1	reviewed	missense	c.1593	p.F531L	1	"HMMPfam_G6PD_C,superfamily_SSF55347"	"HMMPfam_G6PD_N,HMMPfam_G6PD_C,superfamily_NAD(P)-bd,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347"	-	no_errors
GABRE	2564	hgsc.bcm.edu	36	X	150880417	150880417	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	150880417	150880417	A	G	SNP	GABRE	NM_004961	human	genbank	54_36p	-1	reviewed	missense	c.640	p.S214P	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRQ	55879	hgsc.bcm.edu	36	X	151566256	151566256	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	151566256	151566256	C	G	SNP	GABRQ	NM_018558	human	genbank	54_36p	1	reviewed	missense	c.498	p.H166Q	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GNL3L	54552	hgsc.bcm.edu	36	X	54601673	54601673	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	54601673	54601673	C	G	SNP	GNL3L	NM_019067	human	genbank	54_36p	1	validated	missense	c.1526	p.P509R	0.16	NULL	"superfamily_SSF52540,HMMPfam_MMR_HSR1"	-	no_errors
GPR101	83550	hgsc.bcm.edu	36	X	135940734	135940734	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	135940734	135940734	A	T	SNP	GPR101	NM_054021	human	genbank	54_36p	-1	provisional	missense	c.766	p.F256I	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR112	139378	hgsc.bcm.edu	36	X	135218642	135218642	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	135218642	135218642	A	C	SNP	GPR112	NM_153834	human	genbank	54_36p	1	validated	missense	c.40	p.I14L	0.93	NULL	"superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR174	84636	hgsc.bcm.edu	36	X	78313828	78313828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	78313828	78313828	G	A	SNP	GPR174	NM_032553	human	genbank	54_36p	1	provisional	missense	c.668	p.G223E	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
GPR50	9248	hgsc.bcm.edu	36	X	150100216	150100227	+	In_Frame_Del	DEL	CACCACTGGCCA	CACCACTGGCCA	-	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	CACCACTGGCCA	CACCACTGGCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	150100216	150100227	CACCACTGGCCA	-	DEL	GPR50	NM_004224	human	genbank	54_36p	1	validated	in_frame_del	c.1503_1514	p.TTGH502in_frame_del	0.003:0.001:0.002:0.022:0.100:0.726:0.738:0.758:0.720:0.715:0.346:0.355	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_TRYPSIN_HIS"	"(deletion:cds_exon[150098901,150100567])"	no_errors
GPRASP1	9737	hgsc.bcm.edu	36	X	101798078	101798079	+	Frame_Shift_Del	DEL	GG	GG	-	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	101798078	101798079	GG	-	DEL	GPRASP1	NM_001099410	human	genbank	54_36p	1	validated	frame_shift_del	c.2581_2582	p.G861fs	0.001:0.003	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	"(deletion:cds_exon[101795498,101799685])"	no_errors
GRIA3	2892	hgsc.bcm.edu	36	X	122389591	122389591	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	122389591	122389591	G	A	SNP	GRIA3	NM_000828	human	genbank	54_36p	1	reviewed	missense	c.1996	p.E666K	1	"HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRIA3	2892	hgsc.bcm.edu	36	X	122426617	122426617	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	122426617	122426617	T	A	SNP	GRIA3	NM_000828	human	genbank	54_36p	1	reviewed	missense	c.2297	p.V766E	1	"HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II"	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
GRIPAP1	56850	hgsc.bcm.edu	36	X	48716510	48716510	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	48716510	48716510	C	T	SNP	GRIPAP1	NM_020137	human	genbank	54_36p	-1	validated	splice_site	c.2433+1	e25+1	1	-	-	-	no_errors
GRIPAP1	56850	hgsc.bcm.edu	36	X	48738643	48738643	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	48738643	48738643	C	T	SNP	GRIPAP1	NM_020137	human	genbank	54_36p	-1	validated	missense	c.269	p.R90H	1	NULL	superfamily_Prefoldin	-	no_errors
GRPR	2925	hgsc.bcm.edu	36	X	16078381	16078381	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	16078381	16078381	A	G	SNP	GRPR	NM_005314	human	genbank	54_36p	1	reviewed	missense	c.446	p.Q149R	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GSPT2	23708	hgsc.bcm.edu	36	X	51505196	51505196	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	51505196	51505196	A	T	SNP	GSPT2	NM_018094	human	genbank	54_36p	1	validated	missense	c.1734	p.Q578H	1	"HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C"	"HMMPfam_PAM2,superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C"	-	no_errors
HDAC6	10013	hgsc.bcm.edu	36	X	48563511	48563511	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	48563511	48563511	C	A	SNP	HDAC6	NM_006044	human	genbank	54_36p	1	reviewed	missense	c.2242	p.P748T	1	"superfamily_SSF52768,HMMPfam_Hist_deacetyl"	"superfamily_SSF52768,HMMPfam_Hist_deacetyl,HMMSmart_ZnF_UBP,HMMPfam_zf-UBP"	-	no_errors
HTATSF1	27336	hgsc.bcm.edu	36	X	135407528	135407528	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	135407528	135407528	G	C	SNP	HTATSF1	NM_014500	human	genbank	54_36p	1	provisional	missense	c.19	p.D7H	0	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
HTATSF1	27336	hgsc.bcm.edu	36	X	135420003	135420003	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	135420003	135420003	C	T	SNP	HTATSF1	NM_014500	human	genbank	54_36p	1	provisional	nonsense	c.1021	p.Q341*	1	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
HUWE1	10075	hgsc.bcm.edu	36	X	53594646	53594646	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	53594646	53594646	T	C	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.9326	p.H3109R	1	NULL	"HMMPfam_DUF908,superfamily_ARM repeat,HMMPfam_DUF913,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_WWE,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HUWE1	10075	hgsc.bcm.edu	36	X	53618861	53618861	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	53618861	53618861	A	G	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.6076	p.S2026P	1	superfamily_ARM repeat	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
HUWE1	10075	hgsc.bcm.edu	36	X	53672270	53672270	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	53672270	53672270	G	T	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.1141	p.Q381K	1	superfamily_ARM repeat	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
IGSF1	3547	hgsc.bcm.edu	36	X	130240331	130240331	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	130240331	130240331	G	T	SNP	IGSF1	NM_001555	human	genbank	54_36p	-1	validated	missense	c.1826	p.T609N	1	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408"	-	no_errors
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29845546	29845546	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	29845546	29845546	G	T	SNP	IL1RAPL1	NM_014271	human	genbank	54_36p	1	reviewed	nonsense	c.823	p.G275*	1	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29882678	29882678	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	29882678	29882678	G	A	SNP	IL1RAPL1	NM_014271	human	genbank	54_36p	1	reviewed	silent	c.1320	p.K440	1	"HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain"	"HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
IQSEC2	23096	hgsc.bcm.edu	36	X	53287693	53287693	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	53287693	53287693	C	A	SNP	IQSEC2	NM_015075	human	genbank	54_36p	-1	validated	missense	c.2398	p.V800L	1	"superfamily_SSF50729,HMMSmart_PH"	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
IRS4	8471	hgsc.bcm.edu	36	X	107863092	107863092	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	107863092	107863092	C	G	SNP	IRS4	NM_003604	human	genbank	54_36p	-1	reviewed	missense	c.3139	p.V1047L	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
ITM2A	9452	hgsc.bcm.edu	36	X	78503627	78503627	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	78503627	78503627	G	-	DEL	ITM2A	NM_004867	human	genbank	54_36p	-1	validated	frame_shift_del	c.558	p.R187fs	0.99	HMMPfam_BRICHOS	HMMPfam_BRICHOS	"(deletion:cds_exon[78503482,78503632])"	no_errors
KAL1	3730	hgsc.bcm.edu	36	X	8515963	8515963	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	8515963	8515963	G	T	SNP	KAL1	NM_000216	human	genbank	54_36p	-1	reviewed	missense	c.598	p.L200M	1	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
KAL1	3730	hgsc.bcm.edu	36	X	8551675	8551675	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	8551675	8551675	T	C	SNP	KAL1	NM_000216	human	genbank	54_36p	-1	reviewed	missense	c.292	p.K98E	0.86	NULL	"HMMPfam_fn3,HMMSmart_FN3,HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,superfamily_FN_III-like,PatternScan_4_DISULFIDE_CORE"	-	no_errors
KCND1	3750	hgsc.bcm.edu	36	X	48704813	48704813	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	48704813	48704813	G	C	SNP	KCND1	NM_004979	human	genbank	54_36p	-1	reviewed	silent	c.1917	p.P639	0.93	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KDM5C	8242	hgsc.bcm.edu	36	X	53263171	53263171	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	53263171	53263171	C	T	SNP	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	missense	c.536	p.R179H	1	"superfamily_ARID-like,HMMPfam_ARID"	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1"	-	no_errors
KDM5C	8242	hgsc.bcm.edu	36	X	53270730	53270730	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	53270730	53270730	C	G	SNP	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	missense	c.67	p.E23Q	1	"HMMPfam_JmjN,HMMSmart_SM00545"	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
KIAA2022	340533	hgsc.bcm.edu	36	X	73876034	73876034	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	X	73876034	73876034	T	-	DEL	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	frame_shift_del	c.4482	p.A1495fs	1	NULL	NULL	"(deletion:cds_exon[73875965,73876058])"	no_errors
KIAA2022	340533	hgsc.bcm.edu	36	X	73879897	73879897	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	73879897	73879897	G	T	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	missense	c.1220	p.P407H	0.13	NULL	NULL	-	no_errors
KIF4A	24137	hgsc.bcm.edu	36	X	69427358	69427358	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	69427358	69427358	A	T	SNP	KIF4A	NM_012310	human	genbank	54_36p	1	validated	silent	c.213	p.P71	0.99	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin"	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
L1CAM	3897	hgsc.bcm.edu	36	X	152783482	152783482	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	152783482	152783482	T	G	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	missense	c.3034	p.M1012L	1	NULL	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
L1CAM	3897	hgsc.bcm.edu	36	X	152783770	152783770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	152783770	152783770	C	T	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	missense	c.2839	p.V947M	0.26	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
L1CAM	3897	hgsc.bcm.edu	36	X	152783968	152783968	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	152783968	152783968	G	T	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	missense	c.2729	p.T910N	0.75	superfamily_Fibronectin type III	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
L1CAM	3897	hgsc.bcm.edu	36	X	152784145	152784145	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	152784145	152784145	G	A	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	missense	c.2552	p.T851M	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
MAGEA4	4103	hgsc.bcm.edu	36	X	150843513	150843513	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	150843513	150843513	G	T	SNP	MAGEA4	NM_001011548	human	genbank	54_36p	1	reviewed	missense	c.721	p.G241W	0.23	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGEB1	4112	hgsc.bcm.edu	36	X	30178651	30178651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	30178651	30178651	C	G	SNP	MAGEB1	NM_002363	human	genbank	54_36p	1	reviewed	silent	c.120	p.S40	0	NULL	HMMPfam_MAGE	-	no_errors
MAGEB17	645864	hgsc.bcm.edu	36	X	16099315	16099315	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	16099315	16099315	G	A	SNP	LOC645864	XM_001130425	human	genbank	54_36p	1	model	missense	c.1252	p.V418I	0	NULL	HMMPfam_MAGE	-	no_errors
MAGEB6	158809	hgsc.bcm.edu	36	X	26122569	26122569	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	26122569	26122569	T	A	SNP	MAGEB6	NM_173523	human	genbank	54_36p	1	reviewed	missense	c.685	p.Y229N	0.01	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGEC3	139081	hgsc.bcm.edu	36	X	140812334	140812334	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	140812334	140812334	A	G	SNP	MAGEC3	NM_138702	human	genbank	54_36p	1	reviewed	missense	c.1124	p.E375G	0	NULL	HMMPfam_MAGE	-	no_errors
MAGED2	10916	hgsc.bcm.edu	36	X	54857825	54857825	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	54857825	54857825	G	C	SNP	MAGED2	NM_014599	human	genbank	54_36p	1	reviewed	silent	c.1278	p.L426	1	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAOA	4128	hgsc.bcm.edu	36	X	43488000	43488005	+	In_Frame_Del	DEL	CGTGGG	CGTGGG	-	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	CGTGGG	CGTGGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	43488000	43488005	CGTGGG	-	DEL	MAOA	NM_000240	human	genbank	54_36p	1	reviewed	in_frame_del	c.1278_1283	p.VG427in_frame_del	0.051:0.075:0.077:0.011:0.991:0.995	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain"	"(deletion:cds_exon[43487985,43488096])"	no_errors
MAP3K15	389840	hgsc.bcm.edu	36	X	19290851	19290851	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	19290851	19290851	T	C	SNP	MAP3K15	NM_001001671	human	genbank	54_36p	-1	validated	missense	c.2030	p.Q677R	1	NULL	"HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM_homology"	-	no_errors
TAB3	257397	hgsc.bcm.edu	36	X	30783148	30783148	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	30783148	30783148	C	T	SNP	MAP3K7IP3	NM_152787	human	genbank	54_36p	-1	reviewed	missense	c.555	p.M185I	1	NULL	"HMMPfam_CUE,HMMSmart_SM00546,superfamily_NZF domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	-	no_errors
MAP7D2	256714	hgsc.bcm.edu	36	X	19953033	19953033	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	19953033	19953033	C	T	SNP	MAP7D2	NM_152780	human	genbank	54_36p	-1	provisional	missense	c.1246	p.E416K	1	HMMPfam_MAP7	HMMPfam_MAP7	-	no_errors
MAP7D3	79649	hgsc.bcm.edu	36	X	135154483	135154483	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	135154483	135154483	T	A	SNP	MAP7D3	NM_024597	human	genbank	54_36p	-1	validated	nonsense	c.391	p.R131*	0.99	NULL	HMMPfam_MAP7	-	no_errors
MID1	4281	hgsc.bcm.edu	36	X	10423677	10423677	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	10423677	10423677	C	G	SNP	MID1	NM_000381	human	genbank	54_36p	-1	reviewed	missense	c.811	p.E271Q	1	HMMSmart_SM00502	###############################################################################################################################################################################################################################################################	-	no_errors
MOSPD2	158747	hgsc.bcm.edu	36	X	14839425	14839425	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	14839425	14839425	C	A	SNP	MOSPD2	NM_152581	human	genbank	54_36p	1	provisional	missense	c.848	p.S283Y	0.97	NULL	"superfamily_CRAL/TRIO N-terminal domain,superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_CRAL_TRIO,HMMPfam_Motile_Sperm,superfamily_PapD-like"	-	no_errors
MSN	4478	hgsc.bcm.edu	36	X	64866095	64866095	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	64866095	64866095	A	C	SNP	MSN	NM_002444	human	genbank	54_36p	1	reviewed	missense	c.263	p.D88A	1	"HMMSmart_B41,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin"	-	no_errors
MTCP1NB	100272147	hgsc.bcm.edu	36	X	153947128	153947128	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	153947128	153947128	T	C	SNP	MTCP1NB	ENST00000330425	human	ensembl	54_36p	-1	known	missense	c.236	p.D79G	1	"HMMPfam_TCL1_MTCP1,superfamily_Oncogene products"	"HMMPfam_TCL1_MTCP1,superfamily_Oncogene products"	-	no_errors
MTMR8	55613	hgsc.bcm.edu	36	X	63491409	63491409	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	63491409	63491409	G	T	SNP	MTMR8	NM_017677	human	genbank	54_36p	-1	provisional	silent	c.441	p.T147	0.09	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
NAP1L3	4675	hgsc.bcm.edu	36	X	92814217	92814217	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	92814217	92814217	A	T	SNP	NAP1L3	NM_004538	human	genbank	54_36p	-1	reviewed	missense	c.743	p.V248E	0.62	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
NHS	4810	hgsc.bcm.edu	36	X	17653878	17653878	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	17653878	17653878	T	G	SNP	NHS	NM_198270	human	genbank	54_36p	1	reviewed	missense	c.1668	p.S556R	0.98	NULL	NULL	-	no_errors
NHS	4810	hgsc.bcm.edu	36	X	17660270	17660270	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	17660270	17660270	C	T	SNP	NHS	NM_198270	human	genbank	54_36p	1	reviewed	missense	c.4658	p.S1553F	0.01	NULL	NULL	-	no_errors
NKAP	79576	hgsc.bcm.edu	36	X	118961281	118961281	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	118961281	118961281	G	A	SNP	NKAP	NM_024528	human	genbank	54_36p	-1	validated	missense	c.316	p.R106C	0.95	NULL	HMMPfam_DUF926	-	no_errors
NLGN4X	57502	hgsc.bcm.edu	36	X	5831716	5831716	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	5831716	5831716	T	C	SNP	NLGN4X	NM_020742	human	genbank	54_36p	-1	reviewed	missense	c.1003	p.T335A	1	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2"	-	no_errors
NXF3	56000	hgsc.bcm.edu	36	X	102225226	102225226	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	102225226	102225226	C	G	SNP	NXF3	NM_022052	human	genbank	54_36p	-1	reviewed	missense	c.402	p.Q134H	0.97	"superfamily_RNA-binding domain RBD,HMMPfam_Tap-RNA_bind"	"superfamily_RNA-binding domain RBD,HMMPfam_Tap-RNA_bind,superfamily_NTF2-like,HMMPfam_NTF2"	-	no_errors
NXT2	55916	hgsc.bcm.edu	36	X	108666891	108666891	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	108666891	108666891	G	T	SNP	NXT2	NM_018698	human	genbank	54_36p	1	provisional	missense	c.165	p.Q55H	0.02	NULL	"superfamily_SSF54427,HMMPfam_NTF2"	-	no_errors
ODZ1	10178	hgsc.bcm.edu	36	X	123345314	123345314	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	123345314	123345314	C	T	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.7127	p.R2376K	1	NULL	"HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat"	-	no_errors
ODZ1	10178	hgsc.bcm.edu	36	X	123615300	123615300	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	123615300	123615300	G	A	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.1183	p.R395W	1	NULL	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
OGT	8473	hgsc.bcm.edu	36	X	70674534	70674534	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	70674534	70674534	C	T	SNP	OGT	NM_181672	human	genbank	54_36p	1	reviewed	missense	c.349	p.R117C	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1"	-	no_errors
OGT	8473	hgsc.bcm.edu	36	X	70693324	70693324	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	70693324	70693324	G	T	SNP	OGT	NM_181672	human	genbank	54_36p	1	reviewed	nonsense	c.1135	p.E379*	1	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like"	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
OPN1LW	5956	hgsc.bcm.edu	36	X	153071654	153071654	+	Missense_Mutation	SNP	C	C	A	rs713	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	153071654	153071654	C	A	SNP	OPN1LW	NM_020061	human	genbank	54_36p	1	reviewed	missense	c.457	p.L153M	0.88	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN"	-	no_errors
P2RY10	27334	hgsc.bcm.edu	36	X	78102726	78102726	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	78102726	78102726	C	G	SNP	P2RY10	NM_014499	human	genbank	54_36p	1	reviewed	missense	c.53	p.T18S	0.22	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
PASD1	139135	hgsc.bcm.edu	36	X	150593163	150593163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	150593163	150593163	C	T	SNP	PASD1	NM_173493	human	genbank	54_36p	1	validated	missense	c.2024	p.T675I	0	NULL	"HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
PDK3	5165	hgsc.bcm.edu	36	X	24433318	24433318	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	24433318	24433318	G	A	SNP	PDK3	NM_005391	human	genbank	54_36p	1	validated	missense	c.577	p.V193M	1	superfamily_ATP_bd_ATPase	"superfamily_SSF69012,HMMPfam_BCDHK_Adom3,superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c"	-	no_errors
PHKA2	5256	hgsc.bcm.edu	36	X	18825295	18825296	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	18825295	18825296	CC	-	DEL	PHKA2	NM_000292	human	genbank	54_36p	-1	validated	frame_shift_del	c.3189_3188	p.R1063fs	0.997:1.000	HMMPfam_PHK_AB	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	"(deletion:cds_exon[18825202,18825372])"	no_errors
PNCK	139728	hgsc.bcm.edu	36	X	152589209	152589209	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	152589209	152589209	A	T	SNP	PNCK	NM_001039582	human	genbank	54_36p	-1	validated	missense	c.998	p.I333N	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PNMA3	29944	hgsc.bcm.edu	36	X	151977436	151977436	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	151977436	151977436	C	A	SNP	PNMA3	NM_013364	human	genbank	54_36p	1	reviewed	missense	c.1368	p.S456R	0.44	NULL	NULL	-	no_errors
PORCN	64840	hgsc.bcm.edu	36	X	48259087	48259087	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	48259087	48259087	G	A	SNP	PORCN	NM_203475	human	genbank	54_36p	1	reviewed	missense	c.985	p.A329T	1	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
PRRG3	79057	hgsc.bcm.edu	36	X	150619985	150619985	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	150619985	150619985	A	T	SNP	PRRG3	NM_024082	human	genbank	54_36p	1	provisional	missense	c.520	p.T174S	0.93	NULL	"HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1"	-	no_errors
PTCHD1	139411	hgsc.bcm.edu	36	X	23307779	23307779	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	23307779	23307779	C	A	SNP	PTCHD1	NM_173495	human	genbank	54_36p	1	validated	silent	c.502	p.R168	1	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
RAB41	347517	hgsc.bcm.edu	36	X	69420885	69420885	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	69420885	69420885	A	G	SNP	RAB41	NM_001032726	human	genbank	54_36p	1	provisional	silent	c.594	p.S198	0	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
RBM10	8241	hgsc.bcm.edu	36	X	46913777	46913777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	46913777	46913777	G	A	SNP	RBM10	NM_005676	human	genbank	54_36p	1	reviewed	missense	c.137	p.R46H	0.88	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMSmart_SM00443,HMMPfam_G-patch"	-	no_errors
RENBP	5973	hgsc.bcm.edu	36	X	152858822	152858822	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	152858822	152858822	A	G	SNP	RENBP	NM_002910	human	genbank	54_36p	-1	reviewed	missense	c.974	p.M325T	1	"superfamily_Glyco_trans_6hp,HMMPfam_GlcNAc_2-epim"	"superfamily_Glyco_trans_6hp,HMMPfam_GlcNAc_2-epim"	-	no_errors
RENBP	5973	hgsc.bcm.edu	36	X	152860231	152860231	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	152860231	152860231	G	T	SNP	RENBP	NM_002910	human	genbank	54_36p	-1	reviewed	missense	c.809	p.A270D	0.04	superfamily_Glyco_trans_6hp	"superfamily_Glyco_trans_6hp,HMMPfam_GlcNAc_2-epim"	-	no_errors
RNF128	79589	hgsc.bcm.edu	36	X	105921083	105921083	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	105921083	105921083	A	G	SNP	RNF128	NM_194463	human	genbank	54_36p	1	reviewed	silent	c.1116	p.T372	1	NULL	"superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
SASH3	54440	hgsc.bcm.edu	36	X	128749644	128749644	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	128749644	128749644	C	A	SNP	SASH3	NM_018990	human	genbank	54_36p	1	provisional	missense	c.70	p.R24S	1	NULL	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2"	-	no_errors
SHROOM2	357	hgsc.bcm.edu	36	X	9801753	9801753	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	9801753	9801753	G	A	SNP	SHROOM2	NM_001649	human	genbank	54_36p	1	reviewed	missense	c.227	p.G76D	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2"	-	no_errors
SHROOM4	57477	hgsc.bcm.edu	36	X	50395248	50395248	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	50395248	50395248	C	T	SNP	SHROOM4	NM_020717	human	genbank	54_36p	-1	reviewed	missense	c.565	p.A189T	1	NULL	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2"	-	no_errors
SLC7A3	84889	hgsc.bcm.edu	36	X	70062449	70062449	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	70062449	70062449	C	T	SNP	SLC7A3	NM_001048164	human	genbank	54_36p	-1	validated	missense	c.1799	p.R600H	0	NULL	HMMPfam_AA_permease	-	no_errors
SMARCA1	6594	hgsc.bcm.edu	36	X	128458460	128458460	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	128458460	128458460	C	T	SNP	SMARCA1	NM_003069	human	genbank	54_36p	-1	reviewed	missense	c.1574	p.R525H	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C"	###############################################################################################################################################################################################################################################################	-	no_errors
SMARCA1	6594	hgsc.bcm.edu	36	X	128477390	128477390	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	128477390	128477390	G	T	SNP	SMARCA1	NM_003069	human	genbank	54_36p	-1	reviewed	silent	c.585	p.I195	1	"HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
SMC1A	8243	hgsc.bcm.edu	36	X	53453085	53453085	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	53453085	53453085	G	C	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	silent	c.1329	p.T443	0.96	"HMMPfam_SMC_N,superfamily_SSF52540"	"HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge"	-	no_errors
SNX12	29934	hgsc.bcm.edu	36	X	70199435	70199435	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	70199435	70199435	A	G	SNP	SNX12	NM_013346	human	genbank	54_36p	-1	reviewed	silent	c.255	p.D85	1	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	-	no_errors
SPANXN3	139067	hgsc.bcm.edu	36	X	142424465	142424465	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	142424465	142424465	A	T	SNP	SPANXN3	NM_001009609	human	genbank	54_36p	-1	validated	missense	c.271	p.L91I	0.1	HMMPfam_SPAN-X	HMMPfam_SPAN-X	-	no_errors
SPIN3	169981	hgsc.bcm.edu	36	X	57037387	57037387	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	57037387	57037387	A	-	DEL	SPIN3	NM_001010862	human	genbank	54_36p	-1	validated	frame_shift_del	c.719	p.F240fs	1	HMMPfam_Spin-Ssty	HMMPfam_Spin-Ssty	"(deletion:cds_exon[57037329,57038105])"	no_errors
SRPX2	27286	hgsc.bcm.edu	36	X	99812504	99812504	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	99812504	99812504	T	A	SNP	SRPX2	NM_014467	human	genbank	54_36p	1	validated	missense	c.1262	p.I421N	1	NULL	"HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_HYR,superfamily_Complement_control_module"	-	no_errors
STAG2	10735	hgsc.bcm.edu	36	X	123048091	123048091	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	123048091	123048091	G	T	SNP	STAG2	NM_001042749	human	genbank	54_36p	1	validated	nonsense	c.3067	p.E1023*	1	superfamily_ARM-type_fold	"HMMPfam_STAG,superfamily_ARM-type_fold"	-	no_errors
STARD8	9754	hgsc.bcm.edu	36	X	67854613	67854613	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	67854613	67854613	G	A	SNP	STARD8	NM_014725	human	genbank	54_36p	1	validated	missense	c.892	p.D298N	0.27	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
TAF1	6872	hgsc.bcm.edu	36	X	70596215	70596215	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	X	70596215	70596215	T	G	SNP	TAF1	NM_004606	human	genbank	54_36p	1	reviewed	missense	c.5213	p.L1738R	1	NULL	"HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_TBP-binding,superfamily_TAF_II_230,PatternScan_BROMODOMAIN_1"	-	no_errors
TBL1X	6907	hgsc.bcm.edu	36	X	9633064	9633064	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	9633064	9633064	C	A	SNP	TBL1X	NM_005647	human	genbank	54_36p	1	reviewed	missense	c.1146	p.N382K	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00667,HMMPfam_LisH,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1"	-	no_errors
TEX11	56159	hgsc.bcm.edu	36	X	69743567	69743567	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	69743567	69743567	C	T	SNP	TEX11	NM_001003811	human	genbank	54_36p	-1	reviewed	silent	c.1962	p.V654	0.01	NULL	"superfamily_TPR-like,HMMPfam_SPO22,HMMSmart_SM00028"	-	no_errors
TEX11	56159	hgsc.bcm.edu	36	X	69861895	69861895	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	69861895	69861895	A	G	SNP	TEX11	NM_001003811	human	genbank	54_36p	-1	reviewed	silent	c.912	p.L304	1	"HMMPfam_SPO22,superfamily_TPR-like"	"HMMPfam_SPO22,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
TEX13B	56156	hgsc.bcm.edu	36	X	107111840	107111840	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	107111840	107111840	C	A	SNP	TEX13B	NM_031273	human	genbank	54_36p	-1	reviewed	missense	c.174	p.E58D	0	NULL	NULL	-	no_errors
TLR7	51284	hgsc.bcm.edu	36	X	12814267	12814267	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	12814267	12814267	T	C	SNP	TLR7	NM_016562	human	genbank	54_36p	1	reviewed	missense	c.719	p.I240T	0.16	"superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
TLR8	51311	hgsc.bcm.edu	36	X	12848591	12848591	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	12848591	12848591	T	A	SNP	TLR8	NM_138636	human	genbank	54_36p	1	reviewed	missense	c.1511	p.L504H	0.11	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52047,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_TIR,HMMPfam_TIR"	-	no_errors
TLR8	51311	hgsc.bcm.edu	36	X	12848977	12848977	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	12848977	12848977	T	A	SNP	TLR8	NM_138636	human	genbank	54_36p	1	reviewed	missense	c.1897	p.S633T	0	superfamily_SSF52058	"HMMPfam_TIR,superfamily_TIR,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058"	-	no_errors
TMEM185A	84548	hgsc.bcm.edu	36	X	148498255	148498255	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	148498255	148498255	A	T	SNP	TMEM185A	NM_032508	human	genbank	54_36p	-1	provisional	missense	c.278	p.L93H	1	HMMPfam_Tmemb_185A	HMMPfam_Tmemb_185A	-	no_errors
TRMT2B	79979	hgsc.bcm.edu	36	X	100163624	100163624	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	100163624	100163624	G	A	SNP	TRMT2B	NM_024917	human	genbank	54_36p	-1	provisional	silent	c.840	p.Y280	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_MTS"	-	no_errors
UBA1	7317	hgsc.bcm.edu	36	X	46945276	46945276	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	46945276	46945276	C	-	DEL	UBA1	NM_003334	human	genbank	54_36p	1	reviewed	frame_shift_del	c.520	p.R174fs	0.77	"superfamily_MoeB,HMMPfam_ThiF"	"superfamily_MoeB,HMMPfam_ThiF,PatternScan_UBIQUITIN_ACTIVAT_1,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C"	"(deletion:cds_exon[46945237,46945343])"	no_errors
USP11	8237	hgsc.bcm.edu	36	X	46983436	46983436	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	X	46983436	46983436	A	G	SNP	USP11	NM_004651	human	genbank	54_36p	1	reviewed	missense	c.329	p.Y110C	1	HMMSmart_DUSP	"HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
WDR13	64743	hgsc.bcm.edu	36	X	48342266	48342266	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	48342266	48342266	C	T	SNP	WDR13	NM_017883	human	genbank	54_36p	1	reviewed	missense	c.259	p.R87C	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
XIAP	331	hgsc.bcm.edu	36	X	122868603	122868603	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	X	122868603	122868603	T	A	SNP	XIAP	NM_001167	human	genbank	54_36p	1	reviewed	missense	c.1385	p.F462Y	1	"superfamily_SSF57924,HMMSmart_RING"	"PatternScan_ZF_RING_1,superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_RING"	-	no_errors
ZDHHC9	51114	hgsc.bcm.edu	36	X	128785369	128785369	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	128785369	128785369	C	T	SNP	ZDHHC9	NM_001008222	human	genbank	54_36p	-1	validated	missense	c.454	p.A152T	1	HMMPfam_zf-DHHC	HMMPfam_zf-DHHC	-	no_errors
ZNF185	7739	hgsc.bcm.edu	36	X	151839940	151839940	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	151839940	151839940	C	T	SNP	ZNF185	NM_007150	human	genbank	54_36p	1	validated	silent	c.645	p.I215	0.56	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
ZNF41	7592	hgsc.bcm.edu	36	X	47192941	47192941	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	47192941	47192941	C	A	SNP	ZNF41	NM_007130	human	genbank	54_36p	-1	reviewed	missense	c.1172	p.G391V	0.3	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF41	7592	hgsc.bcm.edu	36	X	47193167	47193167	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	X	47193167	47193167	C	T	SNP	ZNF41	NM_007130	human	genbank	54_36p	-1	reviewed	missense	c.946	p.V316I	0	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF449	203523	hgsc.bcm.edu	36	X	134322057	134322057	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	X	134322057	134322057	A	T	SNP	ZNF449	NM_152695	human	genbank	54_36p	1	validated	missense	c.947	p.K316M	0.56	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF630	57232	hgsc.bcm.edu	36	X	47803829	47803829	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	X	47803829	47803829	C	A	SNP	ZNF630	NM_001037735	human	genbank	54_36p	-1	validated	nonsense	c.574	p.E192*	1	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ACOT11	26027	hgsc.bcm.edu	36	1	54832259	54832259	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	54832259	54832259	A	T	SNP	ACOT11	NM_015547	human	genbank	54_36p	1	reviewed	nonsense	c.430	p.K144*	1	superfamily_Thioesterase/thiol ester dehydrase-isomerase	"superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
ACTN2	88	hgsc.bcm.edu	36	1	234967080	234967080	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	234967080	234967080	T	G	SNP	ACTN2	NM_001103	human	genbank	54_36p	1	reviewed	silent	c.819	p.L273	1	superfamily_Spectrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
ACTN2	88	hgsc.bcm.edu	36	1	234985044	234985044	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	234985044	234985044	G	A	SNP	ACTN2	NM_001103	human	genbank	54_36p	1	reviewed	missense	c.2077	p.D693N	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM30	11085	hgsc.bcm.edu	36	1	120239099	120239099	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	120239099	120239099	T	C	SNP	ADAM30	NM_021794	human	genbank	54_36p	-1	reviewed	missense	c.1384	p.N462D	0.21	"HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAMTS4	9507	hgsc.bcm.edu	36	1	159427713	159427713	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	159427713	159427713	C	A	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	missense	c.2353	p.V785F	1	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS4	9507	hgsc.bcm.edu	36	1	159427713	159427713	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	159427713	159427713	C	G	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	missense	c.2353	p.V785L	1	HMMPfam_ADAM_spacer1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS4	9507	hgsc.bcm.edu	36	1	159430448	159430448	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	159430448	159430448	C	G	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	missense	c.1449	p.Q483H	1	HMMSmart_SM00608	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADORA3	140	hgsc.bcm.edu	36	1	111834883	111834883	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	111834883	111834883	C	T	SNP	ADORA3	NM_020683	human	genbank	54_36p	-1	reviewed	silent	c.375	p.G125	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF48726"	-	no_errors
AHCYL1	10768	hgsc.bcm.edu	36	1	110362131	110362131	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	110362131	110362131	C	T	SNP	AHCYL1	NM_006621	human	genbank	54_36p	1	validated	missense	c.1093	p.R365W	1	"superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_AdoHcyase_NAD"	"superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AdoHcyase,PatternScan_ADOHCYASE_1,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_AdoHcyase_NAD,PatternScan_ADOHCYASE_2"	-	no_errors
AMPD2	271	hgsc.bcm.edu	36	1	109970328	109970328	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	109970328	109970328	G	A	SNP	AMPD2	NM_004037	human	genbank	54_36p	1	validated	missense	c.539	p.R180Q	1	NULL	"superfamily_Metallo-dependent hydrolases,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE"	-	no_errors
AMPD2	271	hgsc.bcm.edu	36	1	109970497	109970497	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	109970497	109970497	C	A	SNP	AMPD2	NM_004037	human	genbank	54_36p	1	validated	missense	c.618	p.D206E	0.98	NULL	"HMMPfam_A_deaminase,PatternScan_A_DEAMINASE,superfamily_Metallo-dependent hydrolases"	-	no_errors
ARID1A	8289	hgsc.bcm.edu	36	1	26962198	26962198	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	26962198	26962198	G	T	SNP	ARID1A	NM_006015	human	genbank	54_36p	1	reviewed	missense	c.2567	p.G856V	1	NULL	"superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
ARL8A	127829	hgsc.bcm.edu	36	1	200371278	200371278	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	200371278	200371278	C	A	SNP	ARL8A	NM_138795	human	genbank	54_36p	-1	validated	splice_site	c.373-1	e5-1	1	-	-	-	no_errors
ASAP3	55616	hgsc.bcm.edu	36	1	23632595	23632595	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	23632595	23632595	C	A	SNP	ASAP3	NM_017707	human	genbank	54_36p	-1	reviewed	silent	c.2037	p.A679	0.33	superfamily_Ankyrin repeat	"PatternScan_AIPM_HOMOCIT_SYNTH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
ASTN1	460	hgsc.bcm.edu	36	1	175104627	175104627	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	175104627	175104627	C	T	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	missense	c.3623	p.R1208Q	1	NULL	"HMMSmart_EGF,HMMSmart_MACPF,superfamily_FN_III-like,HMMSmart_FN3"	-	no_errors
ATAD3B	83858	hgsc.bcm.edu	36	1	1414489	1414489	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	1414489	1414489	C	A	SNP	ATAD3B	NM_031921	human	genbank	54_36p	1	provisional	missense	c.1309	p.L437M	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	-	no_errors
ATF6	22926	hgsc.bcm.edu	36	1	160088224	160088224	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	160088224	160088224	C	G	SNP	ATF6	NM_007348	human	genbank	54_36p	1	validated	missense	c.1408	p.L470V	0.34	NULL	"HMMSmart_BRLZ,HMMPfam_bZIP_1,PatternScan_BZIP_BASIC"	-	no_errors
ATP13A2	23400	hgsc.bcm.edu	36	1	17191597	17191597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	17191597	17191597	G	C	SNP	ATP13A2	NM_022089	human	genbank	54_36p	-1	reviewed	missense	c.1816	p.P606A	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP1A2	477	hgsc.bcm.edu	36	1	158371025	158371025	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	158371025	158371025	T	C	SNP	ATP1A2	NM_000702	human	genbank	54_36p	1	reviewed	missense	c.1955	p.V652A	1	"superfamily_SSF81665,superfamily_SSF56784,HMMPfam_Hydrolase"	"HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C"	-	no_errors
ATP1A2	477	hgsc.bcm.edu	36	1	158376384	158376384	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	158376384	158376384	G	C	SNP	ATP1A2	NM_000702	human	genbank	54_36p	1	reviewed	missense	c.3020	p.R1007P	0.99	superfamily_SSF81665	"HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665"	-	no_errors
BAI2	576	hgsc.bcm.edu	36	1	31974901	31974901	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	31974901	31974901	G	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.2990	p.T997N	1	HMMPfam_7tm_2	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
BPNT1	10380	hgsc.bcm.edu	36	1	218319790	218319790	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	218319790	218319790	A	C	SNP	BPNT1	NM_006085	human	genbank	54_36p	-1	validated	missense	c.22	p.L8V	1	"HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase"	"HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase,PatternScan_IMP_1,PatternScan_IMP_2"	-	no_errors
C1orf101	257044	hgsc.bcm.edu	36	1	242813826	242813826	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	242813826	242813826	C	A	SNP	C1orf101	NM_173807	human	genbank	54_36p	1	validated	missense	c.2047	p.P683T	0.3	NULL	NULL	-	no_errors
OSCP1	127700	hgsc.bcm.edu	36	1	36660980	36660980	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	36660980	36660980	C	T	SNP	C1orf102	NM_145047	human	genbank	54_36p	-1	validated	missense	c.755	p.R252Q	1	NULL	HMMPfam_Oscp1	-	no_errors
C1orf173	127254	hgsc.bcm.edu	36	1	74810975	74810975	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	74810975	74810975	C	A	SNP	C1orf173	NM_001002912	human	genbank	54_36p	-1	predicted	missense	c.3007	p.A1003S	0.04	NULL	NULL	-	no_errors
C1orf183	55924	hgsc.bcm.edu	36	1	112071340	112071340	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	112071340	112071340	C	A	SNP	C1orf183	NM_019099	human	genbank	54_36p	-1	validated	missense	c.667	p.D223Y	1	NULL	NULL	-	no_errors
C1orf27	54953	hgsc.bcm.edu	36	1	184621787	184621787	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	184621787	184621787	T	C	SNP	C1orf27	ENST00000287859	human	ensembl	54_36p	1	known	silent	c.279	p.F93	1	NULL	NULL	-	no_errors
C1orf38	9473	hgsc.bcm.edu	36	1	28078808	28078808	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	28078808	28078808	C	T	SNP	C1orf38	NM_001105556	human	genbank	54_36p	1	validated	missense	c.302	p.T101I	0	NULL	NULL	-	no_errors
C1orf43	25912	hgsc.bcm.edu	36	1	152451668	152451668	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	152451668	152451668	G	A	SNP	C1orf43	NM_001098616	human	genbank	54_36p	-1	validated	missense	c.397	p.R133C	1	HMMPfam_NICE-3	HMMPfam_NICE-3	-	no_errors
C1orf95	375057	hgsc.bcm.edu	36	1	224803372	224803372	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	224803372	224803372	C	G	SNP	C1orf95	NM_001003665	human	genbank	54_36p	1	predicted	nonsense	c.144	p.Y48*	1	NULL	NULL	-	no_errors
C4BPA	722	hgsc.bcm.edu	36	1	205364250	205364250	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	205364250	205364250	T	C	SNP	C4BPA	NM_000715	human	genbank	54_36p	1	reviewed	missense	c.622	p.S208P	0.02	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CACNA1E	777	hgsc.bcm.edu	36	1	180007076	180007076	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	180007076	180007076	G	A	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	missense	c.4906	p.E1636K	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1S	779	hgsc.bcm.edu	36	1	199319053	199319053	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	199319053	199319053	T	-	DEL	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1253	p.N418fs	1	superfamily_SSF81324	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	"(deletion:cds_exon[199318913,199319073])"	no_errors
CADM3	57863	hgsc.bcm.edu	36	1	157430347	157430347	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	157430347	157430347	C	T	SNP	CADM3	NM_021189	human	genbank	54_36p	1	validated	missense	c.686	p.T229I	0.05	"superfamily_SSF48726,HMMPfam_C2-set_2,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_4.1m"	-	no_errors
CADM3	57863	hgsc.bcm.edu	36	1	157436271	157436271	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	157436271	157436271	C	A	SNP	CADM3	NM_021189	human	genbank	54_36p	1	validated	missense	c.1161	p.H387Q	0.96	HMMSmart_4.1m	"HMMSmart_4.1m,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726"	-	no_errors
CAMSAP1L1	23271	hgsc.bcm.edu	36	1	199084781	199084781	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	199084781	199084781	G	T	SNP	CAMSAP1L1	NM_203459	human	genbank	54_36p	1	validated	missense	c.2261	p.R754M	1	NULL	"superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781"	-	no_errors
CAMTA1	23261	hgsc.bcm.edu	36	1	7660282	7660282	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	7660282	7660282	T	A	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	missense	c.2816	p.F939Y	1	"superfamily_E set domains,HMMPfam_TIG"	"HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ"	-	no_errors
CASP9	842	hgsc.bcm.edu	36	1	15703827	15703827	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	15703827	15703827	T	G	SNP	CASP9	NM_001229	human	genbank	54_36p	-1	reviewed	missense	c.734	p.Q245P	1	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14"	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
CCDC18	343099	hgsc.bcm.edu	36	1	93453031	93453031	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	93453031	93453031	G	A	SNP	CCDC18	NM_206886	human	genbank	54_36p	1	validated	missense	c.1993	p.A665T	1	NULL	superfamily_Prefoldin	-	no_errors
CCNL2	81669	hgsc.bcm.edu	36	1	1312554	1312554	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	1312554	1312554	G	T	SNP	CCNL2	NM_030937	human	genbank	54_36p	-1	validated	silent	c.1483	p.R495	1	NULL	"HMMPfam_Cyclin_N,superfamily_Cyclin-like,HMMSmart_SM00385"	-	no_errors
CDA	978	hgsc.bcm.edu	36	1	20804076	20804076	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	20804076	20804076	G	A	SNP	CDA	NM_001785	human	genbank	54_36p	1	reviewed	missense	c.223	p.V75I	0.99	"HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES"	"HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES"	-	no_errors
CDC20	991	hgsc.bcm.edu	36	1	43600550	43600550	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	43600550	43600550	C	A	SNP	CDC20	NM_001255	human	genbank	54_36p	1	reviewed	missense	c.1301	p.A434D	1	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CDK11B	984	hgsc.bcm.edu	36	1	1640657	1640657	+	Splice_Site	SNP	A	A	G	rs1059830	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	1640657	1640657	A	G	SNP	CDC2L1	NM_033492	human	genbank	54_36p	-1	reviewed	splice_site	c.324+1	e3+1	0.99	-	-	-	no_errors
CDC42BPA	8476	hgsc.bcm.edu	36	1	225249204	225249204	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	225249204	225249204	C	G	SNP	CDC42BPA	NM_003607	human	genbank	54_36p	-1	reviewed	missense	c.4971	p.L1657F	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CDC73	79577	hgsc.bcm.edu	36	1	191448182	191448182	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	191448182	191448182	C	A	SNP	CDC73	NM_024529	human	genbank	54_36p	1	validated	missense	c.1106	p.T369N	1	HMMPfam_CDC73	HMMPfam_CDC73	-	no_errors
CELA3B	23436	hgsc.bcm.edu	36	1	22185724	22185724	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	22185724	22185724	G	A	SNP	ELA3B	NM_007352	human	genbank	54_36p	1	reviewed	silent	c.756	p.V252	1	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
CENPF	1063	hgsc.bcm.edu	36	1	212885501	212885501	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	212885501	212885501	C	G	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	missense	c.5965	p.Q1989E	0.58	NULL	"HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F"	-	no_errors
CFHR2	3080	hgsc.bcm.edu	36	1	195185355	195185355	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	195185355	195185355	G	A	SNP	CFHR2	NM_005666	human	genbank	54_36p	1	validated	missense	c.206	p.R69H	0	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CHD1L	9557	hgsc.bcm.edu	36	1	145222748	145222748	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	145222748	145222748	T	C	SNP	CHD1L	ENST00000361293	human	ensembl	54_36p	1	known	missense	c.1463	p.F488S	0.97	NULL	"superfamily_SSF52540,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
CHML	1122	hgsc.bcm.edu	36	1	239863810	239863810	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	239863810	239863810	G	A	SNP	CHML	NM_001821	human	genbank	54_36p	-1	reviewed	missense	c.1882	p.P628S	0.01	NULL	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
CHML	1122	hgsc.bcm.edu	36	1	239864151	239864151	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	239864151	239864151	G	C	SNP	CHML	NM_001821	human	genbank	54_36p	-1	reviewed	missense	c.1541	p.S514C	0.77	"HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain"	"HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
CLCA1	1179	hgsc.bcm.edu	36	1	86729572	86729572	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	86729572	86729572	A	G	SNP	CLCA1	NM_001285	human	genbank	54_36p	1	reviewed	missense	c.1394	p.N465S	1	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"HMMPfam_CLCA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_DUF1973,PatternScan_ATPASE_GAMMA"	-	no_errors
CLCA2	9635	hgsc.bcm.edu	36	1	86662672	86662672	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	86662672	86662672	C	A	SNP	CLCA2	NM_006536	human	genbank	54_36p	1	reviewed	missense	c.154	p.P52T	0.26	HMMPfam_CLCA_N	"HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973"	-	no_errors
CLCA4	22802	hgsc.bcm.edu	36	1	86809426	86809426	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	86809426	86809426	T	A	SNP	CLCA4	NM_012128	human	genbank	54_36p	1	reviewed	missense	c.1261	p.S421T	0	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	"HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973"	-	no_errors
CNTN2	6900	hgsc.bcm.edu	36	1	203305707	203305707	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	203305707	203305707	G	C	SNP	CNTN2	NM_005076	human	genbank	54_36p	1	reviewed	missense	c.2326	p.E776Q	0.99	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
COL11A1	1301	hgsc.bcm.edu	36	1	103260930	103260930	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	103260930	103260930	A	C	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.1237	p.F413V	1	NULL	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI"	-	no_errors
COL9A2	1298	hgsc.bcm.edu	36	1	40544435	40544435	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	40544435	40544435	G	A	SNP	COL9A2	NM_001852	human	genbank	54_36p	-1	reviewed	silent	c.1020	p.G340	0.94	NULL	HMMPfam_Collagen	-	no_errors
COL9A2	1298	hgsc.bcm.edu	36	1	40552478	40552479	+	Frame_Shift_Ins	INS	-	-	GA	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	40552478	40552479	-	GA	INS	COL9A2	NM_001852	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.235_234	p.K78fs	0.946:0.859	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
CRB1	23418	hgsc.bcm.edu	36	1	195677953	195677953	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	195677953	195677953	C	G	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.3913	p.P1305A	1	"superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF"	###############################################################################################################################################################################################################################################################	-	no_errors
CREB3L4	148327	hgsc.bcm.edu	36	1	152207768	152207768	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	152207768	152207768	A	G	SNP	CREB3L4	NM_130898	human	genbank	54_36p	1	provisional	missense	c.143	p.Q48R	0.81	NULL	"superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ"	-	no_errors
CRP	1401	hgsc.bcm.edu	36	1	157950307	157950307	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	157950307	157950307	C	T	SNP	CRP	NM_000567	human	genbank	54_36p	-1	validated	missense	c.307	p.E103K	0	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00159,HMMPfam_Pentaxin"	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00159,HMMPfam_Pentaxin,PatternScan_PENTAXIN"	-	no_errors
CSF1	1435	hgsc.bcm.edu	36	1	110265998	110265998	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	110265998	110265998	G	A	SNP	CSF1	NM_000757	human	genbank	54_36p	1	validated	missense	c.403	p.V135I	0.92	"HMMPfam_CSF-1,superfamily_4-helical cytokines"	"HMMPfam_CSF-1,superfamily_4-helical cytokines"	-	no_errors
CSRP1	1465	hgsc.bcm.edu	36	1	199725932	199725932	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	199725932	199725932	G	C	SNP	CSRP1	NM_004078	human	genbank	54_36p	-1	reviewed	missense	c.276	p.H92Q	0.81	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
CTSE	1510	hgsc.bcm.edu	36	1	204486930	204486930	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	204486930	204486930	C	T	SNP	CTSE	NM_001910	human	genbank	54_36p	1	reviewed	silent	c.450	p.A150	0.06	"superfamily_Pept_Aspartic,HMMPfam_Asp"	"superfamily_Pept_Aspartic,HMMPfam_A1_Propeptide,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
CTSE	1510	hgsc.bcm.edu	36	1	204495402	204495402	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	204495402	204495402	A	T	SNP	CTSE	NM_001910	human	genbank	54_36p	1	reviewed	silent	c.846	p.T282	0.94	"HMMPfam_Asp,PatternScan_ASP_PROTEASE,superfamily_Pept_Aspartic"	"HMMPfam_Asp,PatternScan_ASP_PROTEASE,superfamily_Pept_Aspartic,HMMPfam_A1_Propeptide"	-	no_errors
CYP4A11	1579	hgsc.bcm.edu	36	1	47173864	47173864	+	Missense_Mutation	SNP	C	C	A	rs62618709	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	47173864	47173864	C	A	SNP	CYP4A11	NM_000778	human	genbank	54_36p	-1	reviewed	missense	c.553	p.V185F	0.78	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4A11	1579	hgsc.bcm.edu	36	1	47173864	47173864	+	Missense_Mutation	SNP	C	C	A	rs62618709	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	47173864	47173864	C	A	SNP	CYP4A11	NM_000778	human	genbank	54_36p	-1	reviewed	missense	c.553	p.V185F	0.78	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
DCST2	127579	hgsc.bcm.edu	36	1	153265698	153265698	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	153265698	153265698	C	A	SNP	DCST2	NM_144622	human	genbank	54_36p	-1	validated	missense	c.1460	p.R487L	0.99	HMMPfam_DC_STAMP	HMMPfam_DC_STAMP	-	no_errors
DDOST	1650	hgsc.bcm.edu	36	1	20854540	20854540	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	20854540	20854540	G	A	SNP	DDOST	NM_005216	human	genbank	54_36p	-1	reviewed	silent	c.582	p.P194	1	HMMPfam_DDOST_48kD	HMMPfam_DDOST_48kD	-	no_errors
DDX59	83479	hgsc.bcm.edu	36	1	198884312	198884312	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	198884312	198884312	G	C	SNP	DDX59	NM_001031725	human	genbank	54_36p	-1	validated	missense	c.1474	p.L492V	0.54	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C"	"HMMPfam_zf-HIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
DLGAP3	58512	hgsc.bcm.edu	36	1	35142860	35142860	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	35142860	35142860	G	A	SNP	DLGAP3	NM_001080418	human	genbank	54_36p	-1	provisional	missense	c.712	p.H238Y	1	NULL	HMMPfam_GKAP	-	no_errors
DNAJC11	55735	hgsc.bcm.edu	36	1	6620969	6620973	+	Frame_Shift_Del	DEL	CAGCA	CAGCA	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	CAGCA	CAGCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	6620969	6620973	CAGCA	-	DEL	DNAJC11	NM_018198	human	genbank	54_36p	-1	validated	frame_shift_del	c.1296_1292	p.V431fs	1.000:1.000:0.996:0.788:0.997	NULL	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1"	"(deletion:cds_exon[6620942,6621011])"	no_errors
E2F2	1870	hgsc.bcm.edu	36	1	23709034	23709034	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	23709034	23709034	C	A	SNP	E2F2	NM_004091	human	genbank	54_36p	-1	reviewed	silent	c.1239	p.L413	1	NULL	"superfamily_SSF46785,HMMPfam_E2F_TDP"	-	no_errors
ECM1	1893	hgsc.bcm.edu	36	1	148750264	148750264	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	148750264	148750264	G	C	SNP	ECM1	NM_004425	human	genbank	54_36p	1	reviewed	missense	c.674	p.S225T	0	"HMMPfam_ECM1,superfamily_Serum albumin-like"	"HMMPfam_ECM1,superfamily_Serum albumin-like"	-	no_errors
EPS8L3	79574	hgsc.bcm.edu	36	1	110101296	110101296	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	110101296	110101296	G	T	SNP	EPS8L3	NM_139053	human	genbank	54_36p	-1	reviewed	nonsense	c.987	p.C329*	0.8	NULL	"HMMPfam_PTB,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
EPS8L3	79574	hgsc.bcm.edu	36	1	110103248	110103248	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	110103248	110103248	C	A	SNP	EPS8L3	NM_139053	human	genbank	54_36p	-1	reviewed	missense	c.420	p.K140N	0.01	HMMPfam_PTB	"HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PTB"	-	no_errors
ETV3L	440695	hgsc.bcm.edu	36	1	155329520	155329520	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	155329520	155329520	A	G	SNP	ETV3L	NM_001004341	human	genbank	54_36p	-1	provisional	missense	c.631	p.C211R	0.02	NULL	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
F11R	50848	hgsc.bcm.edu	36	1	159237075	159237075	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	159237075	159237075	C	A	SNP	F11R	NM_016946	human	genbank	54_36p	-1	reviewed	missense	c.358	p.G120W	0.99	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
FAAH	2166	hgsc.bcm.edu	36	1	46644311	46644311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	46644311	46644311	A	T	SNP	FAAH	NM_001441	human	genbank	54_36p	1	reviewed	missense	c.800	p.K267M	1	"superfamily_Amidase_sig_enz,HMMPfam_Amidase"	"superfamily_Amidase_sig_enz,HMMPfam_Amidase,PatternScan_AMIDASES"	-	no_errors
FABP3	2170	hgsc.bcm.edu	36	1	31618396	31618396	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	31618396	31618396	T	A	SNP	FABP3	NM_004102	human	genbank	54_36p	-1	reviewed	missense	c.53	p.D18V	1	"superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP"	"superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP"	-	no_errors
FAM129A	116496	hgsc.bcm.edu	36	1	183059456	183059456	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	183059456	183059456	T	G	SNP	FAM129A	NM_052966	human	genbank	54_36p	-1	validated	missense	c.761	p.Q254P	1	NULL	NULL	-	no_errors
FAM163A	148753	hgsc.bcm.edu	36	1	178049624	178049624	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	178049624	178049624	A	T	SNP	FAM163A	NM_173509	human	genbank	54_36p	1	provisional	missense	c.181	p.T61S	0.77	NULL	NULL	-	no_errors
FAM177B	400823	hgsc.bcm.edu	36	1	220989520	220989520	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	220989520	220989520	A	C	SNP	FAM177B	NM_207468	human	genbank	54_36p	1	validated	missense	c.332	p.Q111P	0.12	NULL	NULL	-	no_errors
FAM5B	57795	hgsc.bcm.edu	36	1	175509332	175509332	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	175509332	175509332	A	G	SNP	FAM5B	NM_021165	human	genbank	54_36p	1	provisional	missense	c.755	p.E252G	1	HMMSmart_SM00457	HMMSmart_SM00457	-	no_errors
FAM5C	339479	hgsc.bcm.edu	36	1	188396505	188396505	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	188396505	188396505	A	G	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.1100	p.L367P	0.97	NULL	"HMMPfam_MACPF,HMMSmart_SM00457"	-	no_errors
FBXO28	23219	hgsc.bcm.edu	36	1	222384835	222384835	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	222384835	222384835	G	A	SNP	FBXO28	NM_015176	human	genbank	54_36p	1	validated	silent	c.306	p.L102	1	NULL	HMMPfam_F-box	-	no_errors
FBXO6	26270	hgsc.bcm.edu	36	1	11655959	11655959	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	11655959	11655959	T	A	SNP	FBXO6	NM_018438	human	genbank	54_36p	1	reviewed	missense	c.548	p.L183H	0.01	"HMMPfam_FBA,superfamily_Galactose-binding domain-like"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_FBA,superfamily_Galactose-binding domain-like"	-	no_errors
FCRL1	115350	hgsc.bcm.edu	36	1	156038902	156038902	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	156038902	156038902	C	T	SNP	FCRL1	NM_052938	human	genbank	54_36p	-1	provisional	missense	c.496	p.A166T	0.04	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL3	115352	hgsc.bcm.edu	36	1	155932605	155932605	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	155932605	155932605	T	A	SNP	FCRL3	NM_052939	human	genbank	54_36p	-1	reviewed	missense	c.981	p.R327S	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,PatternScan_N6_MTASE,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL4	83417	hgsc.bcm.edu	36	1	155825629	155825629	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	155825629	155825629	A	C	SNP	FCRL4	NM_031282	human	genbank	54_36p	-1	provisional	missense	c.296	p.L99R	0	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL6	343413	hgsc.bcm.edu	36	1	158045941	158045941	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	158045941	158045941	G	A	SNP	FCRL6	NM_001004310	human	genbank	54_36p	1	validated	missense	c.730	p.D244N	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FLG	2312	hgsc.bcm.edu	36	1	150553011	150553011	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	150553011	150553011	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.975	p.A325	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin"	-	no_errors
FLG2	388698	hgsc.bcm.edu	36	1	150590163	150590163	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	150590163	150590163	T	C	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	silent	c.6723	p.T2241	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin"	-	no_errors
GBP5	115362	hgsc.bcm.edu	36	1	89503201	89503201	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	89503201	89503201	A	T	SNP	GBP5	NM_052942	human	genbank	54_36p	-1	validated	missense	c.905	p.I302N	1	"HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
GBP6	163351	hgsc.bcm.edu	36	1	89618566	89618566	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	89618566	89618566	C	T	SNP	GBP6	NM_198460	human	genbank	54_36p	1	validated	missense	c.659	p.P220L	0.33	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
GJA5	2702	hgsc.bcm.edu	36	1	145697869	145697869	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	145697869	145697869	C	T	SNP	GJA5	NM_005266	human	genbank	54_36p	-1	reviewed	missense	c.102	p.M34I	1	HMMPfam_Connexin	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
GLT25D2	23127	hgsc.bcm.edu	36	1	182210943	182210943	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	182210943	182210943	G	T	SNP	GLT25D2	NM_015101	human	genbank	54_36p	-1	validated	missense	c.403	p.H135N	1	NULL	"HMMPfam_Glyco_transf_25,PatternScan_ER_TARGET"	-	no_errors
GNL2	29889	hgsc.bcm.edu	36	1	37833980	37833980	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	37833980	37833980	T	G	SNP	GNL2	NM_013285	human	genbank	54_36p	-1	validated	missense	c.31	p.T11P	1	NULL	"HMMPfam_NGP1NT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1"	-	no_errors
GNPAT	8443	hgsc.bcm.edu	36	1	229468420	229468420	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	229468420	229468420	A	C	SNP	GNPAT	NM_014236	human	genbank	54_36p	1	reviewed	missense	c.810	p.R270S	1	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	-	no_errors
GPATCH2	55105	hgsc.bcm.edu	36	1	215671253	215671253	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	215671253	215671253	G	A	SNP	GPATCH2	NM_018040	human	genbank	54_36p	-1	provisional	missense	c.1444	p.P482S	1	"HMMSmart_SM00443,HMMPfam_G-patch"	"HMMSmart_SM00443,HMMPfam_G-patch"	-	no_errors
GRIK3	2899	hgsc.bcm.edu	36	1	37044371	37044371	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	37044371	37044371	G	A	SNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	silent	c.2235	p.Y745	1	"HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan"	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,superfamily_SSF55620"	-	no_errors
HEATR1	55127	hgsc.bcm.edu	36	1	234817932	234817932	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	234817932	234817932	A	T	SNP	HEATR1	NM_018072	human	genbank	54_36p	-1	validated	missense	c.1565	p.V522D	0.97	NULL	"superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT"	-	no_errors
HEATR1	55127	hgsc.bcm.edu	36	1	234823964	234823964	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	234823964	234823964	C	A	SNP	HEATR1	NM_018072	human	genbank	54_36p	-1	validated	silent	c.1164	p.L388	0.99	NULL	"HMMPfam_HEAT,HMMPfam_BP28CT,superfamily_ARM-type_fold"	-	no_errors
HFE2	148738	hgsc.bcm.edu	36	1	144127758	144127758	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	144127758	144127758	A	G	SNP	HFE2	NM_213653	human	genbank	54_36p	1	reviewed	missense	c.746	p.D249G	1	HMMPfam_RGM_C	"HMMPfam_RGM_N,HMMPfam_RGM_C"	-	no_errors
HHIPL2	79802	hgsc.bcm.edu	36	1	220783875	220783875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	220783875	220783875	G	A	SNP	HHIPL2	NM_024746	human	genbank	54_36p	-1	validated	missense	c.601	p.P201S	0.03	superfamily_Quino_gluc_DH	superfamily_Quino_gluc_DH	-	no_errors
HLX	3142	hgsc.bcm.edu	36	1	219124398	219124398	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	219124398	219124398	G	A	SNP	HLX	NM_021958	human	genbank	54_36p	1	validated	missense	c.1196	p.R399H	0.28	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184145146	184145146	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	184145146	184145146	A	G	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.676	p.T226A	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184147523	184147523	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	184147523	184147523	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.888	p.M296I	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184254030	184254030	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	184254030	184254030	C	G	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	nonsense	c.5393	p.S1798*	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184273689	184273689	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	184273689	184273689	A	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.5750	p.E1917V	1	superfamily_Immunoglobulin	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184275617	184275617	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	184275617	184275617	T	G	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.6163	p.F2055V	0.97	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184306404	184306404	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	184306404	184306404	A	G	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.8031	p.P2677	0.22	superfamily_Immunoglobulin	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184310531	184310531	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	184310531	184310531	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.8175	p.A2725	0.99	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184342660	184342660	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	184342660	184342660	A	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.10792	p.T3598S	1	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184380031	184380031	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	184380031	184380031	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.14028	p.A4676	0.53	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	hgsc.bcm.edu	36	1	184388576	184388576	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	184388576	184388576	G	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.14968	p.V4990L	1	"HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like"	###############################################################################################################################################################################################################################################################	-	no_errors
HOOK1	51361	hgsc.bcm.edu	36	1	60096727	60096727	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	60096727	60096727	G	A	SNP	HOOK1	NM_015888	human	genbank	54_36p	1	reviewed	missense	c.1282	p.E428K	1	HMMPfam_HOOK	"HMMPfam_HOOK,superfamily_Prefoldin"	-	no_errors
HRNR	388697	hgsc.bcm.edu	36	1	150462353	150462353	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	150462353	150462353	T	-	DEL	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	frame_shift_del	c.1	p.M1fs	0.99	superfamily_SSF47473	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK"	"(deletion:cds_exon[150462216,150462353])"	no_errors
HRNR	388697	hgsc.bcm.edu	36	1	150462353	150462353	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	150462353	150462353	T	-	DEL	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	frame_shift_del	c.1	p.M1fs	0.99	superfamily_SSF47473	"PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473"	"(deletion:cds_exon[150462216,150462353])"	no_errors
HSPG2	3339	hgsc.bcm.edu	36	1	22041909	22041909	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	22041909	22041909	G	C	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.8851	p.Q2951E	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPG2	3339	hgsc.bcm.edu	36	1	22086561	22086561	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	22086561	22086561	G	C	SNP	HSPG2	ENST00000311538	human	ensembl	54_36p	-1	known	missense	c.665	p.P222R	0.56	NULL	NULL	-	no_start_codon
IARS2	55699	hgsc.bcm.edu	36	1	218377959	218377959	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	218377959	218377959	T	A	SNP	IARS2	NM_018060	human	genbank	54_36p	1	validated	missense	c.2126	p.V709D	1	"superfamily_Nucleotidylyl transferase,HMMPfam_tRNA-synt_1"	###############################################################################################################################################################################################################################################################	-	no_errors
IFI6	2537	hgsc.bcm.edu	36	1	27865537	27865537	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	27865537	27865537	C	G	SNP	IFI6	NM_022873	human	genbank	54_36p	-1	reviewed	missense	c.359	p.G120A	0.05	HMMPfam_Ifi-6-16	HMMPfam_Ifi-6-16	-	no_errors
IKBKE	9641	hgsc.bcm.edu	36	1	204724975	204724975	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	204724975	204724975	A	G	SNP	IKBKE	NM_014002	human	genbank	54_36p	1	validated	silent	c.1446	p.G482	0.2	NULL	"PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
IL19	29949	hgsc.bcm.edu	36	1	205082537	205082537	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	205082537	205082537	G	A	SNP	IL19	NM_153758	human	genbank	54_36p	1	reviewed	missense	c.595	p.D199N	0.01	"HMMPfam_IL10,superfamily_4_helix_cytokine,HMMSmart_IL10"	"HMMPfam_IL10,superfamily_4_helix_cytokine,HMMSmart_IL10,PatternScan_INTERLEUKIN_10"	-	no_errors
IL23R	149233	hgsc.bcm.edu	36	1	67421114	67421114	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	67421114	67421114	A	T	SNP	IL23R	NM_144701	human	genbank	54_36p	1	reviewed	silent	c.375	p.P125	1	superfamily_Fibronectin type III	"superfamily_Fibronectin type III,HMMPfam_fn3"	-	no_errors
IL6R	3570	hgsc.bcm.edu	36	1	152687256	152687256	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	152687256	152687256	G	T	SNP	IL6R	NM_000565	human	genbank	54_36p	1	reviewed	silent	c.981	p.V327	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMPfam_IL6Ra-bind,PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
IL6R	3570	hgsc.bcm.edu	36	1	152704402	152704402	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	152704402	152704402	G	A	SNP	IL6R	NM_000565	human	genbank	54_36p	1	reviewed	silent	c.1329	p.S443	0	NULL	"PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_ig,HMMPfam_IL6Ra-bind,superfamily_Immunoglobulin"	-	no_errors
INADL	10207	hgsc.bcm.edu	36	1	62137900	62137900	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	62137900	62137900	G	T	SNP	INADL	NM_176877	human	genbank	54_36p	1	reviewed	missense	c.3189	p.W1063C	1	superfamily_PDZ domain-like	"HMMPfam_L27_2,HMMSmart_SM00569,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
INPP5B	3633	hgsc.bcm.edu	36	1	38125648	38125648	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	38125648	38125648	C	A	SNP	INPP5B	NM_005540	human	genbank	54_36p	-1	reviewed	missense	c.976	p.V326L	1	"superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos"	"PatternScan_LECTIN_LEGUME_BETA,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
IPO9	55705	hgsc.bcm.edu	36	1	200107005	200107005	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	200107005	200107005	G	A	SNP	IPO9	NM_018085	human	genbank	54_36p	1	validated	missense	c.2503	p.A835T	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N"	-	no_errors
IQGAP3	128239	hgsc.bcm.edu	36	1	154762923	154762923	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	154762923	154762923	G	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	silent	c.4875	p.N1625	1	NULL	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C"	-	no_errors
DCAF6	55827	hgsc.bcm.edu	36	1	166299619	166299619	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	166299619	166299619	A	G	SNP	IQWD1	NM_018442	human	genbank	54_36p	1	validated	missense	c.2224	p.M742V	1	"superfamily_WD40_like,HMMSmart_WD40"	"HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,HMMSmart_IQ"	-	no_errors
IRF6	3664	hgsc.bcm.edu	36	1	208030850	208030850	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	208030850	208030850	C	G	SNP	IRF6	NM_006147	human	genbank	54_36p	-1	reviewed	missense	c.673	p.D225H	1	"superfamily_SMAD_FHA,HMMPfam_IRF-3"	"HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3"	-	no_errors
ITPKB	3707	hgsc.bcm.edu	36	1	224889110	224889110	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	224889110	224889110	G	C	SNP	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	missense	c.2726	p.T909S	1	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	-	no_errors
IVL	3713	hgsc.bcm.edu	36	1	151149735	151149735	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	151149735	151149735	A	T	SNP	IVL	NM_005547	human	genbank	54_36p	1	reviewed	missense	c.838	p.M280L	0	HMMPfam_Involucrin	"PatternScan_INVOLUCRIN,HMMPfam_Involucrin_N,HMMPfam_Involucrin"	-	no_errors
IVNS1ABP	10625	hgsc.bcm.edu	36	1	183537277	183537277	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	183537277	183537277	G	A	SNP	IVNS1ABP	NM_006469	human	genbank	54_36p	-1	validated	silent	c.807	p.S269	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
IVNS1ABP	10625	hgsc.bcm.edu	36	1	183544621	183544621	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	183544621	183544621	T	A	SNP	IVNS1ABP	NM_006469	human	genbank	54_36p	-1	validated	silent	c.291	p.A97	0.98	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
KCNC4	3749	hgsc.bcm.edu	36	1	110567135	110567135	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	110567135	110567135	C	A	SNP	KCNC4	NM_004978	human	genbank	54_36p	1	reviewed	missense	c.705	p.F235L	1	superfamily_Voltage-gated potassium channels	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KCNJ9	3765	hgsc.bcm.edu	36	1	158324018	158324018	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	158324018	158324018	C	A	SNP	KCNJ9	NM_004983	human	genbank	54_36p	1	reviewed	missense	c.969	p.H323Q	1	"HMMPfam_IRK,superfamily_Ig_E-set"	"HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set"	-	no_errors
KIAA1614	57710	hgsc.bcm.edu	36	1	179152716	179152716	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	179152716	179152716	G	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	1	validated	missense	c.854	p.G285V	0	NULL	NULL	-	no_errors
KIAA1751	85452	hgsc.bcm.edu	36	1	1910196	1910197	+	In_Frame_Ins	INS	-	-	CCC	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	1910196	1910197	-	CCC	INS	KIAA1751	NM_001080484	human	genbank	54_36p	-1	predicted	in_frame_ins	c.144_143	p.49in_frame_insG	0.000:0.000	NULL	NULL	-	no_errors
KIF14	9928	hgsc.bcm.edu	36	1	198837703	198837703	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	198837703	198837703	C	T	SNP	KIF14	NM_014875	human	genbank	54_36p	-1	validated	missense	c.2096	p.R699H	1	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin"	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA"	-	no_errors
KIF17	57576	hgsc.bcm.edu	36	1	20886897	20886897	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	20886897	20886897	C	T	SNP	KIF17	NM_020816	human	genbank	54_36p	-1	validated	silent	c.1509	p.T503	0	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
KIF1B	23095	hgsc.bcm.edu	36	1	10308776	10308776	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	10308776	10308776	G	T	SNP	KIF1B	NM_015074	human	genbank	54_36p	1	reviewed	missense	c.2558	p.C853F	1	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
KIF21B	23046	hgsc.bcm.edu	36	1	199222879	199222879	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	199222879	199222879	G	T	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	missense	c.3482	p.T1161N	1	superfamily_WD40_like	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
KLHL20	27252	hgsc.bcm.edu	36	1	172010130	172010130	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	172010130	172010130	G	C	SNP	KLHL20	NM_014458	human	genbank	54_36p	1	reviewed	silent	c.1359	p.V453	0.99	"superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
KPRP	448834	hgsc.bcm.edu	36	1	150998772	150998772	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	150998772	150998772	C	T	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	silent	c.84	p.S28	0	NULL	NULL	-	no_errors
KTI12	112970	hgsc.bcm.edu	36	1	52271160	52271160	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	52271160	52271160	C	A	SNP	KTI12	NM_138417	human	genbank	54_36p	-1	validated	missense	c.862	p.A288S	0.96	HMMPfam_KTI12	"superfamily_SSF52540,HMMPfam_KTI12"	-	no_errors
L1TD1	54596	hgsc.bcm.edu	36	1	62449200	62449200	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	62449200	62449200	A	G	SNP	L1TD1	NM_019079	human	genbank	54_36p	1	validated	silent	c.2166	p.K722	0.48	HMMPfam_Transposase_22	HMMPfam_Transposase_22	-	no_errors
LCK	3932	hgsc.bcm.edu	36	1	32512572	32512572	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	32512572	32512572	G	T	SNP	LCK	NM_001042771	human	genbank	54_36p	1	reviewed	missense	c.55	p.V19L	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LEPR	3953	hgsc.bcm.edu	36	1	65875250	65875250	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	65875250	65875250	G	C	SNP	LEPR	NM_002303	human	genbank	54_36p	1	validated	missense	c.3462	p.K1154N	0.68	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1,HMMPfam_Lep_receptor_Ig,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
LEPRE1	64175	hgsc.bcm.edu	36	1	42985635	42985635	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	42985635	42985635	T	-	DEL	LEPRE1	NM_022356	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1950	p.F651fs	0.99	"HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy"	"superfamily_SSF48452,HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy"	"(deletion:cds_exon[42985170,42985670])"	no_errors
LGR6	59352	hgsc.bcm.edu	36	1	200516573	200516585	+	Frame_Shift_Del	DEL	GCTTCGAGGGGCT	GCTTCGAGGGGCT	-	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	GCTTCGAGGGGCT	GCTTCGAGGGGCT	GCTTCGAGGGGCT	-	GCTTCGAGGGGCT	GCTTCGAGGGGCT	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	200516573	200516585	GCTTCGAGGGGCT	-	DEL	LGR6	NM_001017403	human	genbank	54_36p	1	reviewed	frame_shift_del	c.686_698	p.F230fs	1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_RNI-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"(deletion:cds_exon[200516532,200516603])"	no_errors
LIN9	286826	hgsc.bcm.edu	36	1	224563500	224563501	+	In_Frame_Ins	INS	-	-	TGC	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	224563500	224563501	-	TGC	INS	LIN9	NM_173083	human	genbank	54_36p	-1	provisional	in_frame_ins	c.12_11	p.5in_frame_insH	1.000:1.000	NULL	HMMPfam_DIRP	-	no_errors
LIX1L	128077	hgsc.bcm.edu	36	1	144203726	144203726	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	144203726	144203726	T	A	SNP	LIX1L	NM_153713	human	genbank	54_36p	1	provisional	silent	c.591	p.S197	1	NULL	NULL	-	no_errors
LPAR3	23566	hgsc.bcm.edu	36	1	85052402	85052402	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	85052402	85052402	C	T	SNP	LPAR3	NM_012152	human	genbank	54_36p	-1	reviewed	silent	c.777	p.L259	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LPHN2	23266	hgsc.bcm.edu	36	1	82075294	82075294	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	82075294	82075294	T	C	SNP	LPHN2	NM_012302	human	genbank	54_36p	1	reviewed	missense	c.37	p.F13L	1	NULL	"HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin"	-	no_errors
LPHN2	23266	hgsc.bcm.edu	36	1	82228764	82228764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	82228764	82228764	G	A	SNP	LPHN2	NM_012302	human	genbank	54_36p	1	reviewed	missense	c.3559	p.D1187N	1	HMMPfam_Latrophilin	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_SM00008,HMMPfam_OLF,HMMSmart_SM00284,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
LRRC47	57470	hgsc.bcm.edu	36	1	3687595	3687595	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	3687595	3687595	C	A	SNP	LRRC47	NM_020710	human	genbank	54_36p	-1	validated	missense	c.1669	p.D557Y	1	NULL	"superfamily_SSF52047,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMPfam_B3_4"	-	no_errors
LRRC7	57554	hgsc.bcm.edu	36	1	70274878	70274878	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	70274878	70274878	T	G	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.2157	p.N719K	1	NULL	"superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
LRRC7	57554	hgsc.bcm.edu	36	1	70314368	70314368	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	70314368	70314368	G	A	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	silent	c.4137	p.T1379	0.31	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
LRRC8C	84230	hgsc.bcm.edu	36	1	89951416	89951416	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	89951416	89951416	G	T	SNP	LRRC8C	NM_032270	human	genbank	54_36p	1	validated	missense	c.699	p.K233N	1	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
MACF1	23499	hgsc.bcm.edu	36	1	39595898	39595898	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	39595898	39595898	G	A	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.7009	p.E2337K	1	"superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC"	"superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2"	-	no_errors
MACF1	23499	hgsc.bcm.edu	36	1	39625884	39625884	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	39625884	39625884	A	G	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.10103	p.E3368G	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
MACF1	23499	hgsc.bcm.edu	36	1	39668235	39668235	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	39668235	39668235	G	C	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.12358	p.G4120R	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
MAD2L2	10459	hgsc.bcm.edu	36	1	11658751	11658751	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	11658751	11658751	C	-	DEL	MAD2L2	NM_006341	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.366	p.L123fs	1	"superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA"	"superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA"	"(deletion:cds_exon[11658690,11658784])"	no_errors
MARK1	4139	hgsc.bcm.edu	36	1	218875350	218875350	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	218875350	218875350	G	A	SNP	MARK1	NM_018650	human	genbank	54_36p	1	validated	missense	c.1132	p.G378S	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_SM00165,superfamily_Kinase associated domain 1 KA1,HMMPfam_KA1"	-	no_errors
MFSD2A	84879	hgsc.bcm.edu	36	1	40195401	40195401	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	40195401	40195401	C	G	SNP	MFSD2	NM_032793	human	genbank	54_36p	1	validated	missense	c.149	p.A50G	1	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
MIA3	375056	hgsc.bcm.edu	36	1	220869082	220869082	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	220869082	220869082	T	C	SNP	MIA3	NM_198551	human	genbank	54_36p	1	validated	missense	c.1897	p.S633P	0.13	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2"	-	no_errors
MIA3	375056	hgsc.bcm.edu	36	1	220870005	220870005	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	220870005	220870005	G	C	SNP	MIA3	NM_198551	human	genbank	54_36p	1	validated	missense	c.2820	p.Q940H	0.96	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2"	-	no_errors
MMEL1	79258	hgsc.bcm.edu	36	1	2517896	2517896	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	2517896	2517896	G	A	SNP	MMEL1	NM_033467	human	genbank	54_36p	-1	reviewed	silent	c.1338	p.Y446	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
MORN1	79906	hgsc.bcm.edu	36	1	2295839	2295839	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	2295839	2295839	G	T	SNP	MORN1	NM_024848	human	genbank	54_36p	-1	provisional	missense	c.555	p.D185E	0.02	"superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN"	"superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN"	-	no_errors
MORN1	79906	hgsc.bcm.edu	36	1	2307164	2307164	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	2307164	2307164	C	T	SNP	MORN1	NM_024848	human	genbank	54_36p	-1	provisional	missense	c.391	p.V131M	0.01	"HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain"	"HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain"	-	no_errors
PRSS38	339501	hgsc.bcm.edu	36	1	226071694	226071694	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	226071694	226071694	C	T	SNP	MPN2	NM_183062	human	genbank	54_36p	1	validated	missense	c.473	p.T158I	0.02	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
MRPL9	65005	hgsc.bcm.edu	36	1	150000577	150000577	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	150000577	150000577	T	C	SNP	MRPL9	NM_031420	human	genbank	54_36p	-1	reviewed	missense	c.562	p.I188V	1	NULL	"HMMPfam_Ribosomal_L9_N,superfamily_L9 N-domain-like"	-	no_errors
MTF2	22823	hgsc.bcm.edu	36	1	93374936	93374936	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	93374936	93374936	G	T	SNP	MTF2	NM_007358	human	genbank	54_36p	1	validated	missense	c.1546	p.V516L	1	NULL	"HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
MTOR	2475	hgsc.bcm.edu	36	1	11195520	11195520	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	11195520	11195520	G	C	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.3318	p.N1106K	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
MTOR	2475	hgsc.bcm.edu	36	1	11195530	11195530	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	11195530	11195530	A	T	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.3308	p.F1103Y	1	superfamily_ARM-type_fold	"HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452"	-	no_errors
MTOR	2475	hgsc.bcm.edu	36	1	11213970	11213970	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	11213970	11213970	C	T	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.2623	p.E875K	1	superfamily_ARM-type_fold	"HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452"	-	no_errors
MYCL1	4610	hgsc.bcm.edu	36	1	40135829	40135829	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	40135829	40135829	C	G	SNP	MYCL1	NM_001033081	human	genbank	54_36p	-1	validated	silent	c.897	p.S299	0.06	"HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353"	"HMMPfam_Myc_N,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353"	-	no_errors
MYOM3	127294	hgsc.bcm.edu	36	1	24306263	24306263	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	24306263	24306263	G	A	SNP	MYOM3	NM_152372	human	genbank	54_36p	-1	validated	nonsense	c.289	p.R97*	0.98	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_EF_HAND_1,HMMPfam_ig"	-	no_errors
NAV1	89796	hgsc.bcm.edu	36	1	200018497	200018497	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	200018497	200018497	C	A	SNP	NAV1	NM_020443	human	genbank	54_36p	1	reviewed	missense	c.2234	p.A745E	1	NULL	"PatternScan_PPASE,superfamily_SSF52540,HMMSmart_AAA"	-	no_errors
NAV1	89796	hgsc.bcm.edu	36	1	200046324	200046324	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	200046324	200046324	A	G	SNP	NAV1	NM_020443	human	genbank	54_36p	1	reviewed	missense	c.4603	p.K1535E	1	superfamily_SSF52540	"HMMSmart_AAA,PatternScan_PPASE,superfamily_SSF52540"	-	no_errors
NAV1	89796	hgsc.bcm.edu	36	1	200048286	200048286	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	200048286	200048286	G	C	SNP	NAV1	NM_020443	human	genbank	54_36p	1	reviewed	missense	c.5086	p.V1696L	1	HMMSmart_AAA	"HMMSmart_AAA,PatternScan_PPASE,superfamily_SSF52540"	-	no_errors
NBPF1	55672	hgsc.bcm.edu	36	1	16763950	16763952	+	In_Frame_Del	DEL	TCG	TCG	-	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	TCG	TCG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	16763950	16763952	TCG	-	DEL	NBPF1	ENST00000287968	human	ensembl	54_36p	-1	known	in_frame_del	c.1534_1532	p.T511in_frame_del	0.108:0.109:0.111	NULL	HMMPfam_DUF1220	"(deletion:cds_exon[16763889,16764000])"	no_errors
NBPF1	55672	hgsc.bcm.edu	36	1	16764843	16764843	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	16764843	16764843	T	C	SNP	NBPF1	ENST00000287968	human	ensembl	54_36p	-1	known	missense	c.1355	p.Q452R	0	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NBPF12	440675	hgsc.bcm.edu	36	1	144929375	144929375	+	Missense_Mutation	SNP	C	C	A	rs5015286	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	144929375	144929375	C	A	SNP	NBPF12	XM_001715810	human	genbank	54_36p	1	model	missense	c.628	p.P210T	0	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NBPF12	440675	hgsc.bcm.edu	36	1	144929408	144929408	+	Missense_Mutation	SNP	T	T	C	rs4098124	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	144929408	144929408	T	C	SNP	NBPF12	XM_001715810	human	genbank	54_36p	1	model	missense	c.661	p.Y221H	0	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NBPF14	25832	hgsc.bcm.edu	36	1	146476133	146476133	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	146476133	146476133	C	T	SNP	NBPF14	NM_015383	human	genbank	54_36p	-1	predicted	missense	c.1798	p.G600R	0	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NBPF3	84224	hgsc.bcm.edu	36	1	21680843	21680843	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	21680843	21680843	G	A	SNP	NBPF3	NM_032264	human	genbank	54_36p	1	validated	missense	c.1600	p.V534M	0	HMMPfam_DUF1220	HMMPfam_DUF1220	-	no_errors
NBPF7	343505	hgsc.bcm.edu	36	1	120183350	120183350	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	120183350	120183350	T	A	SNP	NBPF7	NM_001047980	human	genbank	54_36p	-1	predicted	missense	c.818	p.D273V	0	NULL	HMMPfam_DUF1220	-	no_errors
NES	10763	hgsc.bcm.edu	36	1	154908577	154908577	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	154908577	154908577	T	C	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.2027	p.E676G	0.01	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
NFASC	23114	hgsc.bcm.edu	36	1	203206450	203206450	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	203206450	203206450	A	T	SNP	NFASC	NM_015090	human	genbank	54_36p	1	validated	missense	c.1120	p.N374Y	1	"HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726"	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
NOTCH2	4853	hgsc.bcm.edu	36	1	120262689	120262689	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	120262689	120262689	C	T	SNP	NOTCH2	NM_024408	human	genbank	54_36p	-1	reviewed	missense	c.5792	p.R1931H	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH2	4853	hgsc.bcm.edu	36	1	120269944	120269944	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	120269944	120269944	C	A	SNP	NOTCH2	NM_024408	human	genbank	54_36p	-1	reviewed	missense	c.4018	p.A1340S	0	"HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH2	4853	hgsc.bcm.edu	36	1	120294980	120294980	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	120294980	120294980	T	C	SNP	NOTCH2	NM_024408	human	genbank	54_36p	-1	reviewed	missense	c.2369	p.Y790C	0.05	"HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196"	###############################################################################################################################################################################################################################################################	-	no_errors
NPR1	4881	hgsc.bcm.edu	36	1	151924921	151924921	+	Missense_Mutation	SNP	G	G	A	rs61757359	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	151924921	151924921	G	A	SNP	NPR1	NM_000906	human	genbank	54_36p	1	validated	missense	c.1621	p.G541S	1	"HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
NR1I3	9970	hgsc.bcm.edu	36	1	159469286	159469286	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	159469286	159469286	G	T	SNP	NR1I3	NM_001077482	human	genbank	54_36p	-1	reviewed	missense	c.483	p.F161L	0.73	superfamily_Str_ncl_receptor	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
NTRK1	4914	hgsc.bcm.edu	36	1	155118005	155118005	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	155118005	155118005	C	G	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	missense	c.2338	p.R780G	0.16	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
NUF2	83540	hgsc.bcm.edu	36	1	161576840	161576840	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	161576840	161576840	G	C	SNP	NUF2	NM_031423	human	genbank	54_36p	1	reviewed	missense	c.669	p.L223F	1	NULL	HMMPfam_Nuf2	-	no_errors
NVL	4931	hgsc.bcm.edu	36	1	222481965	222481965	+	Missense_Mutation	SNP	A	A	G	rs41271483	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	222481965	222481965	A	G	SNP	NVL	NM_002533	human	genbank	54_36p	-1	validated	missense	c.2557	p.S853P	0.16	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
OLFM3	118427	hgsc.bcm.edu	36	1	102075049	102075049	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	102075049	102075049	T	A	SNP	OLFM3	NM_058170	human	genbank	54_36p	-1	validated	missense	c.190	p.R64W	1	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
OR2B11	127623	hgsc.bcm.edu	36	1	245681884	245681884	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	245681884	245681884	G	-	DEL	OR2B11	NM_001004492	human	genbank	54_36p	-1	provisional	frame_shift_del	c.24	p.L9fs	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[245680954,245681907])"	no_errors
OR2T3	343173	hgsc.bcm.edu	36	1	246703816	246703817	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	246703816	246703817	-	T	INS	OR2T3	NM_001005495	human	genbank	54_36p	1	provisional	frame_shift_ins	c.542_543	p.C184fs	0.000:0.000	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T34	127068	hgsc.bcm.edu	36	1	246804218	246804218	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	246804218	246804218	A	G	SNP	OR2T34	NM_001001821	human	genbank	54_36p	-1	provisional	missense	c.464	p.V155A	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PAFAH2	5051	hgsc.bcm.edu	36	1	26171773	26171773	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	26171773	26171773	C	T	SNP	PAFAH2	NM_000437	human	genbank	54_36p	-1	reviewed	missense	c.947	p.S316N	1	"HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases"	"HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases"	-	no_errors
PAPPA2	60676	hgsc.bcm.edu	36	1	174942195	174942195	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	174942195	174942195	G	T	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.3443	p.G1148V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PAPPA2	60676	hgsc.bcm.edu	36	1	175025638	175025638	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	175025638	175025638	G	A	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.4786	p.E1596K	0.96	"HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	###############################################################################################################################################################################################################################################################	-	no_errors
PARP1	142	hgsc.bcm.edu	36	1	224631528	224631528	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	224631528	224631528	C	T	SNP	PARP1	NM_001618	human	genbank	54_36p	-1	reviewed	missense	c.1845	p.M615I	1	"HMMPfam_WGR,HMMSmart_SM00773"	###############################################################################################################################################################################################################################################################	-	no_errors
PARS2	25973	hgsc.bcm.edu	36	1	54996505	54996505	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	54996505	54996505	C	T	SNP	PARS2	NM_152268	human	genbank	54_36p	-1	provisional	silent	c.918	p.E306	1	superfamily_Class II aaRS and biotin synthetases	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
PDE4DIP	9659	hgsc.bcm.edu	36	1	143577954	143577954	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	143577954	143577954	C	G	SNP	PDE4DIP	NM_014644	human	genbank	54_36p	-1	validated	missense	c.5645	p.G1882A	0	NULL	HMMPfam_Microtub_assoc	-	no_errors
PDE4DIP	9659	hgsc.bcm.edu	36	1	143617840	143617840	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	143617840	143617840	C	A	SNP	PDE4DIP	NM_014644	human	genbank	54_36p	-1	validated	missense	c.2374	p.V792L	1	NULL	HMMPfam_Microtub_assoc	-	no_errors
PDE4DIP	9659	hgsc.bcm.edu	36	1	143623633	143623633	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	143623633	143623633	C	G	SNP	PDE4DIP	NM_014644	human	genbank	54_36p	-1	validated	missense	c.1999	p.V667L	1	NULL	HMMPfam_Microtub_assoc	-	no_errors
PHACTR4	65979	hgsc.bcm.edu	36	1	28658317	28658317	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	28658317	28658317	A	-	DEL	PHACTR4	NM_023923	human	genbank	54_36p	1	reviewed	frame_shift_del	c.181	p.S64fs	1	NULL	"HMMSmart_RPEL,HMMPfam_RPEL"	"(deletion:cds_exon[28658183,28658356])"	no_errors
PIGK	10026	hgsc.bcm.edu	36	1	77399927	77399927	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	77399927	77399927	T	G	SNP	PIGK	NM_005482	human	genbank	54_36p	-1	reviewed	silent	c.642	p.R214	1	HMMPfam_Peptidase_C13	HMMPfam_Peptidase_C13	-	no_errors
PIGM	93183	hgsc.bcm.edu	36	1	158267443	158267443	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	158267443	158267443	C	A	SNP	PIGM	NM_145167	human	genbank	54_36p	-1	reviewed	silent	c.711	p.T237	0.01	HMMPfam_Mannosyl_trans	HMMPfam_Mannosyl_trans	-	no_errors
PKP1	5317	hgsc.bcm.edu	36	1	199553496	199553496	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	199553496	199553496	A	T	SNP	PKP1	NM_000299	human	genbank	54_36p	1	reviewed	missense	c.1020	p.R340S	1	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
PKP1	5317	hgsc.bcm.edu	36	1	199557862	199557862	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	199557862	199557862	G	A	SNP	PKP1	NM_000299	human	genbank	54_36p	1	reviewed	missense	c.1544	p.S515N	1	superfamily_ARM repeat	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
POU2F1	5451	hgsc.bcm.edu	36	1	165648050	165648050	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	165648050	165648050	G	-	DEL	POU2F1	NM_002697	human	genbank	54_36p	1	provisional	frame_shift_del	c.1717	p.A573fs	1	NULL	"HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	"(deletion:cds_exon[165647820,165648165])"	no_errors
PPFIA4	8497	hgsc.bcm.edu	36	1	201296733	201296733	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	201296733	201296733	G	A	SNP	PPFIA4	NM_015053	human	genbank	54_36p	1	validated	missense	c.1279	p.V427I	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
PPT1	5538	hgsc.bcm.edu	36	1	40318657	40318657	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	40318657	40318657	C	T	SNP	PPT1	NM_000310	human	genbank	54_36p	-1	reviewed	missense	c.626	p.R209Q	1	"HMMPfam_Palm_thioest,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Palm_thioest,superfamily_alpha/beta-Hydrolases"	-	no_errors
PRAMEF12	390999	hgsc.bcm.edu	36	1	12759909	12759909	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	12759909	12759909	G	T	SNP	PRAMEF12	NM_001080830	human	genbank	54_36p	1	provisional	missense	c.1032	p.E344D	0.44	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF3	401940	hgsc.bcm.edu	36	1	13203354	13203354	+	Silent	SNP	G	G	C	rs1320957	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	13203354	13203354	G	C	SNP	PRAMEF3	NM_001013692	human	genbank	54_36p	-1	validated	silent	c.513	p.V171	0.01	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRDM2	7799	hgsc.bcm.edu	36	1	13978981	13978982	+	In_Frame_Ins	INS	-	-	CTC	rs2308040	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	13978981	13978982	-	CTC	INS	PRDM2	NM_012231	human	genbank	54_36p	1	reviewed	in_frame_ins	c.2104_2105	p.704in_frame_insP	0.047:0.150	NULL	"superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PRDM2	7799	hgsc.bcm.edu	36	1	13979571	13979571	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	13979571	13979571	C	T	SNP	PRDM2	NM_012231	human	genbank	54_36p	1	reviewed	silent	c.2694	p.G898	0.03	NULL	"HMMPfam_SET,HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_SET domain"	-	no_errors
PRKCZ	5590	hgsc.bcm.edu	36	1	2072153	2072153	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	2072153	2072153	A	C	SNP	PRKCZ	NM_002744	human	genbank	54_36p	1	reviewed	missense	c.752	p.D251A	1	superfamily_Kinase_like	###############################################################################################################################################################################################################################################################	-	no_errors
PRKCZ	5590	hgsc.bcm.edu	36	1	2072179	2072179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	2072179	2072179	C	T	SNP	PRKCZ	NM_002744	human	genbank	54_36p	1	reviewed	missense	c.778	p.R260C	1	"HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
PRRX1	5396	hgsc.bcm.edu	36	1	168962105	168962105	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	168962105	168962105	G	A	SNP	PRRX1	NM_022716	human	genbank	54_36p	1	reviewed	missense	c.538	p.V180I	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
PSMB4	5692	hgsc.bcm.edu	36	1	149639671	149639671	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	149639671	149639671	C	G	SNP	PSMB4	NM_002796	human	genbank	54_36p	1	reviewed	silent	c.477	p.G159	1	"superfamily_SSF56235,HMMPfam_Proteasome"	"superfamily_SSF56235,HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
PTGFRN	5738	hgsc.bcm.edu	36	1	117311463	117311463	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	117311463	117311463	T	C	SNP	PTGFRN	NM_020440	human	genbank	54_36p	1	provisional	missense	c.2047	p.F683L	1	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
PTPRC	5788	hgsc.bcm.edu	36	1	196952466	196952470	+	Frame_Shift_Del	DEL	ATCAA	ATCAA	-	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	ATCAA	ATCAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	196952466	196952470	ATCAA	-	DEL	PTPRC	NM_002838	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1318_1322	p.K441fs	0.000:0.000:0.000:0.000:0.000	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	"(deletion:cds_exon[196952434,196952592])"	no_errors
PUM1	9698	hgsc.bcm.edu	36	1	31240608	31240608	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	31240608	31240608	T	C	SNP	PUM1	NM_001020658	human	genbank	54_36p	-1	reviewed	missense	c.767	p.K256R	1	NULL	"superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025"	-	no_errors
RAB3B	5865	hgsc.bcm.edu	36	1	52215215	52215215	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	52215215	52215215	C	G	SNP	RAB3B	NM_002867	human	genbank	54_36p	-1	provisional	missense	c.163	p.V55L	0.99	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	-	no_errors
RAD54L	8438	hgsc.bcm.edu	36	1	46488323	46488323	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	46488323	46488323	G	A	SNP	RAD54L	NM_003579	human	genbank	54_36p	1	reviewed	missense	c.155	p.R52Q	1	NULL	"HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
RASSF5	83593	hgsc.bcm.edu	36	1	204826798	204826798	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	204826798	204826798	C	A	SNP	RASSF5	NM_182664	human	genbank	54_36p	1	reviewed	missense	c.1006	p.P336T	1	NULL	"superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_RA"	-	no_errors
RGS16	6004	hgsc.bcm.edu	36	1	180837829	180837829	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	180837829	180837829	G	A	SNP	RGS16	NM_002928	human	genbank	54_36p	-1	reviewed	silent	c.282	p.F94	1	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
RGS7	6000	hgsc.bcm.edu	36	1	239328667	239328667	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	239328667	239328667	G	A	SNP	RGS7	NM_002924	human	genbank	54_36p	-1	validated	missense	c.97	p.R33W	1	superfamily_SSF46785	"superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
RHBG	57127	hgsc.bcm.edu	36	1	154620972	154620972	+	Frame_Shift_Del	DEL	C	C	-	rs11303415	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	154620972	154620972	C	-	DEL	RHBG	NM_020407	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1265	p.R425fs	0.71	"HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)"	"HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)"	"(deletion:cds_exon[154620942,154621016])"	no_errors
RNF220	55182	hgsc.bcm.edu	36	1	44650948	44650948	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	44650948	44650948	G	T	SNP	RNF220	NM_018150	human	genbank	54_36p	1	validated	missense	c.592	p.A198S	1	NULL	superfamily_RING/U-box	-	no_errors
ROR1	4919	hgsc.bcm.edu	36	1	64287993	64287993	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	64287993	64287993	C	T	SNP	ROR1	NM_005012	human	genbank	54_36p	1	validated	missense	c.206	p.T69M	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409"	###############################################################################################################################################################################################################################################################	-	no_errors
ROR1	4919	hgsc.bcm.edu	36	1	64380784	64380784	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	64380784	64380784	C	G	SNP	ROR1	NM_005012	human	genbank	54_36p	1	validated	missense	c.1037	p.T346S	1	"HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SIKE1	80143	hgsc.bcm.edu	36	1	115124580	115124580	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	115124580	115124580	C	A	SNP	SIKE	NM_001102396	human	genbank	54_36p	-1	validated	splice_site	c.171+1	e1+1	0.17	-	-	-	no_errors
RPS6KC1	26750	hgsc.bcm.edu	36	1	211470508	211470508	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	211470508	211470508	A	T	SNP	RPS6KC1	NM_012424	human	genbank	54_36p	1	validated	nonsense	c.1090	p.K364*	1	superfamily_Protein kinase-like (PK-like)	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00745,HMMPfam_MIT,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	-	no_errors
RUSC1	23623	hgsc.bcm.edu	36	1	153562021	153562021	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	153562021	153562021	T	G	SNP	RUSC1	NM_001105203	human	genbank	54_36p	1	validated	missense	c.1748	p.V583G	0.98	HMMPfam_RUN	"HMMPfam_RUN,HMMSmart_SM00593,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
RXFP4	339403	hgsc.bcm.edu	36	1	154178638	154178645	+	Frame_Shift_Del	DEL	GTGACGGT	GTGACGGT	-	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	GTGACGGT	GTGACGGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	154178638	154178645	GTGACGGT	-	DEL	RXFP4	NM_181885	human	genbank	54_36p	1	validated	frame_shift_del	c.514_521	p.V172fs	0.970:0.970:0.865:0.852:0.852:0.004:0.004:0.861	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	"(deletion:cds_exon[154178125,154179249])"	no_errors
RYR2	6262	hgsc.bcm.edu	36	1	236014831	236014831	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	236014831	236014831	A	G	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.13196	p.N4399S	0.91	HMMPfam_RR_TM4-6	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
S100A10	6281	hgsc.bcm.edu	36	1	150222273	150222273	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	150222273	150222273	C	T	SNP	S100A10	NM_002966	human	genbank	54_36p	-1	reviewed	missense	c.284	p.G95E	0.95	NULL	"superfamily_EF-hand,HMMPfam_S_100,PatternScan_S100_CABP"	-	no_errors
S100A7L2	645922	hgsc.bcm.edu	36	1	151677364	151677364	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	151677364	151677364	T	C	SNP	S100A7L2	NM_001045479	human	genbank	54_36p	-1	validated	silent	c.66	p.G22	0	superfamily_SSF47473	"PatternScan_S100_CABP,superfamily_SSF47473,PatternScan_EF_HAND_1"	-	no_errors
SAMD11	148398	hgsc.bcm.edu	36	1	864328	864329	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	864328	864329	-	C	INS	SAMD11	NM_152486	human	genbank	54_36p	1	validated	frame_shift_ins	c.476_477	p.D160fs	1.000:0.997	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
SCCPDH	51097	hgsc.bcm.edu	36	1	244956825	244956825	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	244956825	244956825	A	G	SNP	SCCPDH	NM_016002	human	genbank	54_36p	1	validated	missense	c.199	p.T67A	1	"superfamily_NAD(P)-bd,HMMPfam_Saccharop_dh"	"superfamily_NAD(P)-bd,HMMPfam_Saccharop_dh"	-	no_errors
SELP	6403	hgsc.bcm.edu	36	1	167848917	167848917	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	167848917	167848917	G	T	SNP	SELP	NM_003005	human	genbank	54_36p	-1	reviewed	missense	c.649	p.L217M	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
SELP	6403	hgsc.bcm.edu	36	1	167849547	167849548	+	Frame_Shift_Del	DEL	GG	GG	-	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	167849547	167849548	GG	-	DEL	SELP	NM_003005	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.490_489	p.C163fs	0.016:0.311	"HMMPfam_EGF,superfamily_EGF/Laminin"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin"	"(deletion:cds_exon[167849448,167849555])"	no_errors
SEMA4A	64218	hgsc.bcm.edu	36	1	154397868	154397868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	154397868	154397868	C	T	SNP	SEMA4A	NM_022367	human	genbank	54_36p	1	provisional	silent	c.918	p.H306	1	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold"	-	no_errors
SEMA4A	64218	hgsc.bcm.edu	36	1	154397905	154397905	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	154397905	154397905	C	T	SNP	SEMA4A	NM_022367	human	genbank	54_36p	1	provisional	missense	c.955	p.H319Y	0	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema"	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold"	-	no_errors
SERTAD4	56256	hgsc.bcm.edu	36	1	208479473	208479473	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	208479473	208479473	G	A	SNP	SERTAD4	NM_019605	human	genbank	54_36p	1	validated	missense	c.188	p.R63K	1	NULL	HMMPfam_SERTA	-	no_errors
SESN2	83667	hgsc.bcm.edu	36	1	28471771	28471771	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	28471771	28471771	C	T	SNP	SESN2	NM_031459	human	genbank	54_36p	1	reviewed	silent	c.630	p.F210	0.95	HMMPfam_PA26	"HMMPfam_PA26,superfamily_SSF69118"	-	no_errors
SETDB1	9869	hgsc.bcm.edu	36	1	149183055	149183055	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	149183055	149183055	A	G	SNP	SETDB1	NM_012432	human	genbank	54_36p	1	reviewed	missense	c.911	p.Y304C	1	HMMSmart_TUDOR	"HMMSmart_TUDOR,HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET"	-	no_errors
SF3B4	10262	hgsc.bcm.edu	36	1	148162383	148162384	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	148162383	148162384	-	G	INS	SF3B4	NM_005850	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1061_1060	p.R354fs	1.000:1.000	NULL	"HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1"	-	no_errors
SIPA1L2	57568	hgsc.bcm.edu	36	1	230647919	230647919	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	230647919	230647919	C	T	SNP	SIPA1L2	NM_020808	human	genbank	54_36p	-1	validated	missense	c.3332	p.R1111Q	1	NULL	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
SLAMF1	6504	hgsc.bcm.edu	36	1	158883331	158883331	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	158883331	158883331	G	A	SNP	SLAMF1	NM_003037	human	genbank	54_36p	-1	validated	missense	c.29	p.T10I	0	HMMPfam_SLAM	HMMPfam_SLAM	-	no_errors
SLAMF6	114836	hgsc.bcm.edu	36	1	158727778	158727778	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	158727778	158727778	G	T	SNP	SLAMF6	NM_052931	human	genbank	54_36p	-1	reviewed	missense	c.407	p.T136N	0	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
SLAMF7	57823	hgsc.bcm.edu	36	1	158984742	158984742	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	158984742	158984742	C	A	SNP	SLAMF7	NM_021181	human	genbank	54_36p	1	provisional	missense	c.190	p.Q64K	0	"HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
SLC25A44	9673	hgsc.bcm.edu	36	1	154444402	154444402	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	154444402	154444402	A	T	SNP	SLC25A44	NM_014655	human	genbank	54_36p	1	validated	missense	c.727	p.M243L	1	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	-	no_errors
SLC2A1	6513	hgsc.bcm.edu	36	1	43165445	43165445	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	43165445	43165445	A	G	SNP	SLC2A1	NM_006516	human	genbank	54_36p	-1	reviewed	missense	c.1333	p.F445L	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SLC44A5	204962	hgsc.bcm.edu	36	1	75457529	75457529	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	75457529	75457529	C	G	SNP	SLC44A5	NM_152697	human	genbank	54_36p	-1	validated	splice_site	c.1266+1	e15+1	1	-	-	-	no_errors
SMPDL3B	27293	hgsc.bcm.edu	36	1	28144398	28144398	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	28144398	28144398	G	A	SNP	SMPDL3B	NM_014474	human	genbank	54_36p	1	validated	missense	c.130	p.V44M	0.97	"superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos"	"superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos"	-	no_errors
SMPDL3B	27293	hgsc.bcm.edu	36	1	28155060	28155060	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	28155060	28155060	C	T	SNP	SMPDL3B	NM_014474	human	genbank	54_36p	1	validated	silent	c.885	p.S295	0.96	superfamily_Metallo-dependent phosphatases	"HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases"	-	no_errors
SMYD2	56950	hgsc.bcm.edu	36	1	212558104	212558104	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	212558104	212558104	A	G	SNP	SMYD2	NM_020197	human	genbank	54_36p	1	validated	silent	c.408	p.S136	0.99	"HMMSmart_SET,superfamily_SSF82199"	"HMMSmart_SET,superfamily_SSF82199,PatternScan_ZF_MYND_1,HMMPfam_zf-MYND"	-	no_errors
SNX27	81609	hgsc.bcm.edu	36	1	149897409	149897409	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	149897409	149897409	C	G	SNP	SNX27	NM_030918	human	genbank	54_36p	1	reviewed	missense	c.618	p.N206K	1	"superfamily_PX,HMMSmart_PX,HMMPfam_PX"	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PX,HMMSmart_PX,HMMPfam_PX,HMMPfam_RA"	-	no_errors
SNX7	51375	hgsc.bcm.edu	36	1	98933689	98933689	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	98933689	98933689	C	T	SNP	SNX7	NM_015976	human	genbank	54_36p	1	reviewed	missense	c.475	p.P159S	1	NULL	"superfamily_PX domain,HMMSmart_SM00312,HMMPfam_PX"	-	no_errors
SORT1	6272	hgsc.bcm.edu	36	1	109658889	109658889	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	109658889	109658889	G	C	SNP	SORT1	NM_002959	human	genbank	54_36p	-1	reviewed	missense	c.2285	p.A762G	1	NULL	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,PatternScan_HEMOCYANIN_2"	-	no_errors
SOX13	9580	hgsc.bcm.edu	36	1	202360506	202360506	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	202360506	202360506	C	G	SNP	SOX13	NM_005686	human	genbank	54_36p	1	reviewed	missense	c.1490	p.P497R	1	superfamily_HMG-box	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
SPAG17	200162	hgsc.bcm.edu	36	1	118445922	118445922	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	118445922	118445922	G	A	SNP	SPAG17	NM_206996	human	genbank	54_36p	-1	validated	missense	c.598	p.R200W	0.14	NULL	NULL	-	no_errors
SPATA21	374955	hgsc.bcm.edu	36	1	16608712	16608712	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	16608712	16608712	G	A	SNP	SPATA21	NM_198546	human	genbank	54_36p	-1	provisional	silent	c.558	p.S186	0	NULL	"superfamily_SSF47473,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
SPEN	23013	hgsc.bcm.edu	36	1	16127227	16127227	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	16127227	16127227	T	G	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	missense	c.1905	p.S635R	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC"	-	no_errors
SPRR1B	6699	hgsc.bcm.edu	36	1	151271550	151271550	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	151271550	151271550	C	T	SNP	SPRR1B	NM_003125	human	genbank	54_36p	1	provisional	silent	c.105	p.P35	0.01	HMMPfam_Cornifin	HMMPfam_Cornifin	-	no_errors
ST6GALNAC3	256435	hgsc.bcm.edu	36	1	76650418	76650418	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	76650418	76650418	A	G	SNP	ST6GALNAC3	NM_152996	human	genbank	54_36p	1	provisional	silent	c.351	p.E117	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
SYT6	148281	hgsc.bcm.edu	36	1	114443306	114443306	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	114443306	114443306	T	A	SNP	SYT6	NM_205848	human	genbank	54_36p	-1	validated	missense	c.1042	p.I348F	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SYT6	148281	hgsc.bcm.edu	36	1	114481862	114481862	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	114481862	114481862	G	A	SNP	SYT6	NM_205848	human	genbank	54_36p	-1	validated	silent	c.594	p.T198	0.98	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
TAF12	6883	hgsc.bcm.edu	36	1	28804553	28804553	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	28804553	28804553	T	C	SNP	TAF12	NM_005644	human	genbank	54_36p	-1	reviewed	missense	c.368	p.Q123R	1	"superfamily_Histone-fold,HMMPfam_TFIID_20kDa"	"superfamily_Histone-fold,HMMPfam_TFIID_20kDa"	-	no_errors
TAF5L	27097	hgsc.bcm.edu	36	1	227804776	227804776	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	227804776	227804776	G	A	SNP	TAF5L	NM_014409	human	genbank	54_36p	-1	reviewed	missense	c.761	p.P254L	1	superfamily_WD40 repeat-like	"HMMPfam_TFIID_90kDa,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
TGFBR3	7049	hgsc.bcm.edu	36	1	91996862	91996862	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	91996862	91996862	G	T	SNP	TGFBR3	NM_003243	human	genbank	54_36p	-1	validated	missense	c.280	p.H94N	0.99	NULL	"HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1"	-	no_errors
THBS3	7059	hgsc.bcm.edu	36	1	153434495	153434495	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	153434495	153434495	C	G	SNP	THBS3	NM_007112	human	genbank	54_36p	-1	reviewed	missense	c.2215	p.D739H	1	superfamily_Concanavalin A-like lectins/glucanases	"HMMSmart_SM00210,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_TSP_C"	-	no_errors
THBS3	7059	hgsc.bcm.edu	36	1	153441286	153441286	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	153441286	153441286	C	G	SNP	THBS3	NM_007112	human	genbank	54_36p	-1	reviewed	missense	c.630	p.E210D	0.97	NULL	"HMMSmart_SM00179,HMMSmart_SM00210,HMMPfam_TSP_3,HMMSmart_SM00181,HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_TSP type-3 repeat,superfamily_EGF/Laminin"	-	no_errors
TIE1	7075	hgsc.bcm.edu	36	1	43559542	43559542	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	43559542	43559542	C	A	SNP	TIE1	NM_005424	human	genbank	54_36p	1	provisional	silent	c.3123	p.V1041	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	###############################################################################################################################################################################################################################################################	-	no_errors
TIPRL	261726	hgsc.bcm.edu	36	1	166427328	166427328	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	166427328	166427328	A	-	DEL	TIPRL	NM_152902	human	genbank	54_36p	1	validated	frame_shift_del	c.482	p.H161fs	1	HMMPfam_TIP41	HMMPfam_TIP41	"(deletion:cds_exon[166427231,166427362])"	no_errors
TIPRL	261726	hgsc.bcm.edu	36	1	166432504	166432504	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	166432504	166432504	G	A	SNP	TIPRL	NM_152902	human	genbank	54_36p	1	validated	silent	c.612	p.E204	1	HMMPfam_TIP41	HMMPfam_TIP41	-	no_errors
TMEM48	55706	hgsc.bcm.edu	36	1	54035264	54035264	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	54035264	54035264	A	T	SNP	TMEM48	NM_018087	human	genbank	54_36p	-1	provisional	missense	c.1364	p.V455E	0.61	HMMPfam_Ndc1_Nup	HMMPfam_Ndc1_Nup	-	no_errors
TNNI3K	51086	hgsc.bcm.edu	36	1	74677791	74677791	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	74677791	74677791	C	T	SNP	TNNI3K	NM_015978	human	genbank	54_36p	1	validated	silent	c.1908	p.F636	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
TNNI3K	51086	hgsc.bcm.edu	36	1	74701769	74701769	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	74701769	74701769	A	T	SNP	TNNI3K	NM_015978	human	genbank	54_36p	1	validated	missense	c.2068	p.I690F	1	"HMMPfam_Pkinase_Tyr,superfamily_Kinase_like"	"HMMPfam_Pkinase_Tyr,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
TNR	7143	hgsc.bcm.edu	36	1	173639206	173639206	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	173639206	173639206	G	A	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	silent	c.669	p.S223	0.96	"HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_1"	"PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like"	-	no_errors
CELF3	11189	hgsc.bcm.edu	36	1	149948134	149948134	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	149948134	149948134	C	T	SNP	TNRC4	NM_007185	human	genbank	54_36p	-1	reviewed	silent	c.450	p.A150	0.75	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1"	-	no_errors
TOR1AIP1	26092	hgsc.bcm.edu	36	1	178153307	178153307	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	178153307	178153307	C	A	SNP	TOR1AIP1	NM_015602	human	genbank	54_36p	1	validated	missense	c.1062	p.F354L	0	HMMPfam_LAP1C	HMMPfam_LAP1C	-	no_errors
TRAF5	7188	hgsc.bcm.edu	36	1	209599931	209599931	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	209599931	209599931	C	G	SNP	TRAF5	NM_001033910	human	genbank	54_36p	1	reviewed	missense	c.433	p.R145G	0.56	"superfamily_TRAF domain-like,HMMPfam_zf-TRAF"	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,HMMPfam_zf-TRAF,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
TRIM33	51592	hgsc.bcm.edu	36	1	114768789	114768789	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	114768789	114768789	G	A	SNP	TRIM33	NM_015906	human	genbank	54_36p	-1	reviewed	missense	c.1807	p.P603S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM58	25893	hgsc.bcm.edu	36	1	246106056	246106056	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	246106056	246106056	C	A	SNP	TRIM58	NM_015431	human	genbank	54_36p	1	validated	missense	c.1103	p.P368Q	0	"HMMPfam_SPRY,HMMSmart_SPRY"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
TRIM58	25893	hgsc.bcm.edu	36	1	246106397	246106397	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	246106397	246106397	A	G	SNP	TRIM58	NM_015431	human	genbank	54_36p	1	validated	missense	c.1444	p.R482G	0.01	NULL	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMSmart_SPRY,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
TRNAU1AP	54952	hgsc.bcm.edu	36	1	28770319	28770319	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	28770319	28770319	G	C	SNP	TRNAU1AP	NM_017846	human	genbank	54_36p	1	validated	missense	c.575	p.S192T	1	superfamily_RNA-binding domain RBD	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1"	-	no_errors
TTC24	164118	hgsc.bcm.edu	36	1	154822140	154822140	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	154822140	154822140	C	T	SNP	TTC24	NM_001105669	human	genbank	54_36p	1	validated	missense	c.628	p.P210S	0.01	NULL	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
TTF2	8458	hgsc.bcm.edu	36	1	117436944	117436944	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	117436944	117436944	G	C	SNP	TTF2	NM_003594	human	genbank	54_36p	1	reviewed	missense	c.2874	p.L958F	1	NULL	"HMMPfam_zf-GRF,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
TXLNA	200081	hgsc.bcm.edu	36	1	32430561	32430561	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	32430561	32430561	G	T	SNP	TXLNA	NM_175852	human	genbank	54_36p	1	validated	missense	c.1026	p.Q342H	1	HMMPfam_Taxilin	HMMPfam_Taxilin	-	no_errors
TXNDC12	51060	hgsc.bcm.edu	36	1	52259248	52259248	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	52259248	52259248	T	A	SNP	TXNDC12	NM_015913	human	genbank	54_36p	-1	provisional	missense	c.464	p.Q155L	1	superfamily_Thioredoxin-like	"superfamily_Thioredoxin-like,PatternScan_THIOREDOXIN_1"	-	no_errors
TYW3	127253	hgsc.bcm.edu	36	1	74977011	74977011	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	74977011	74977011	C	G	SNP	TYW3	NM_138467	human	genbank	54_36p	1	provisional	missense	c.305	p.P102R	1	"HMMPfam_TYW3,superfamily_DUF207"	"HMMPfam_TYW3,superfamily_DUF207"	-	no_errors
UBE4B	10277	hgsc.bcm.edu	36	1	10153945	10153945	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	10153945	10153945	C	T	SNP	UBE4B	NM_001105562	human	genbank	54_36p	1	reviewed	missense	c.3496	p.R1166W	1	HMMPfam_Ufd2P_core	"HMMPfam_Ufd2P_core,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504"	-	no_errors
UBR4	23352	hgsc.bcm.edu	36	1	19326770	19326770	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	19326770	19326770	T	G	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	silent	c.9162	p.V3054	0.94	NULL	"superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	hgsc.bcm.edu	36	1	19391336	19391336	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	19391336	19391336	G	A	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	nonsense	c.1327	p.R443*	1	NULL	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
USP24	23358	hgsc.bcm.edu	36	1	55372611	55372611	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	55372611	55372611	G	C	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	missense	c.2785	p.L929V	1	NULL	"superfamily_Ubiquitin-like,PatternScan_SUGAR_TRANSPORT_1,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP24	23358	hgsc.bcm.edu	36	1	55385220	55385220	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	55385220	55385220	A	C	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	silent	c.1740	p.T580	0.99	NULL	"HMMPfam_UCH,PatternScan_SUGAR_TRANSPORT_1,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like"	-	no_errors
VANGL2	57216	hgsc.bcm.edu	36	1	158656913	158656913	+	Missense_Mutation	SNP	G	G	A	rs61744131	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	158656913	158656913	G	A	SNP	VANGL2	NM_020335	human	genbank	54_36p	1	validated	missense	c.889	p.V297I	1	HMMPfam_Strabismus	HMMPfam_Strabismus	-	no_errors
VAV3	10451	hgsc.bcm.edu	36	1	108099623	108099623	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	108099623	108099623	A	G	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	silent	c.1122	p.D374	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VAV3	10451	hgsc.bcm.edu	36	1	108101405	108101405	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	1	108101405	108101405	C	G	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	splice_site	c.1086+1	e11+1	1	-	-	-	no_errors
VN1R5	317705	hgsc.bcm.edu	36	1	245486650	245486650	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	245486650	245486650	C	T	SNP	VN1R5	NM_173858	human	genbank	54_36p	1	validated	silent	c.654	p.H218	0	NULL	HMMPfam_V1R	-	pseudogene
VPS13D	55187	hgsc.bcm.edu	36	1	12236389	12236389	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	12236389	12236389	G	T	SNP	VPS13D	NM_015378	human	genbank	54_36p	1	reviewed	missense	c.588	p.K196N	1	NULL	"superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_DUF1162"	-	no_errors
WDR47	22911	hgsc.bcm.edu	36	1	109339758	109339758	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	109339758	109339758	G	C	SNP	WDR47	NM_014969	human	genbank	54_36p	-1	validated	missense	c.1661	p.P554R	1	NULL	"HMMSmart_LisH,HMMSmart_CTLH,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
WDR63	126820	hgsc.bcm.edu	36	1	85336824	85336824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	85336824	85336824	G	C	SNP	WDR63	NM_145172	human	genbank	54_36p	1	validated	missense	c.1374	p.E458D	0.02	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
WDR78	79819	hgsc.bcm.edu	36	1	67065207	67065207	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	67065207	67065207	C	A	SNP	WDR78	NM_024763	human	genbank	54_36p	-1	validated	missense	c.2223	p.L741F	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
YIPF1	54432	hgsc.bcm.edu	36	1	54104629	54104629	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	54104629	54104629	G	A	SNP	YIPF1	NM_018982	human	genbank	54_36p	-1	provisional	silent	c.663	p.I221	1	HMMPfam_Yip1	HMMPfam_Yip1	-	no_errors
YY1AP1	55249	hgsc.bcm.edu	36	1	153896254	153896254	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	153896254	153896254	C	G	SNP	YY1AP1	NM_139118	human	genbank	54_36p	-1	reviewed	missense	c.2209	p.G737R	0.01	NULL	NULL	-	no_errors
ZBTB40	9923	hgsc.bcm.edu	36	1	22711050	22711050	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	22711050	22711050	T	A	SNP	ZBTB40	NM_001083621	human	genbank	54_36p	1	validated	missense	c.2297	p.V766E	1	HMMSmart_SM00355	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZCCHC11	23318	hgsc.bcm.edu	36	1	52713588	52713588	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	52713588	52713588	T	C	SNP	ZCCHC11	NM_001009881	human	genbank	54_36p	-1	validated	missense	c.2231	p.N744S	0.42	NULL	"PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2"	-	no_errors
ZCCHC17	51538	hgsc.bcm.edu	36	1	31584404	31584404	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	1	31584404	31584404	G	C	SNP	ZCCHC17	NM_016505	human	genbank	54_36p	1	provisional	missense	c.239	p.R80T	1	"superfamily_Nucleic acid-binding proteins,HMMPfam_S1,HMMSmart_SM00316"	"superfamily_Nucleic acid-binding proteins,HMMPfam_S1,HMMSmart_SM00316"	-	no_errors
ZFYVE9	9372	hgsc.bcm.edu	36	1	52571104	52571104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	52571104	52571104	A	T	SNP	ZFYVE9	NM_004799	human	genbank	54_36p	1	reviewed	missense	c.3515	p.H1172L	1	NULL	"HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZMYM4	9202	hgsc.bcm.edu	36	1	35628234	35628234	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	35628234	35628234	G	C	SNP	ZMYM4	NM_005095	human	genbank	54_36p	1	validated	missense	c.2535	p.L845F	1	"HMMPfam_zf-FCS,HMMSmart_SM00746"	"HMMPfam_zf-FCS,HMMSmart_SM00746,PatternScan_GLYCO_HORMONE_BETA_1"	-	no_errors
ZMYND12	84217	hgsc.bcm.edu	36	1	42694165	42694165	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	42694165	42694165	A	-	DEL	ZMYND12	NM_032257	human	genbank	54_36p	-1	provisional	frame_shift_del	c.91	p.C31fs	1	"PatternScan_ZF_MYND_1,HMMPfam_zf-MYND"	"PatternScan_ZF_MYND_1,HMMPfam_zf-MYND,superfamily_TPR-like"	"(deletion:cds_exon[42694146,42694255])"	no_errors
ZNF238	10472	hgsc.bcm.edu	36	1	242283789	242283793	+	Frame_Shift_Del	DEL	TTTTC	TTTTC	-	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	TTTTC	TTTTC	TTTTC	-	TTTTC	TTTTC	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	242283789	242283793	TTTTC	-	DEL	ZNF238	NM_205768	human	genbank	54_36p	1	validated	frame_shift_del	c.90_94	p.F31fs	0.963:1.000:1.000:1.000:1.000	"superfamily_BTB/POZ_fold,HMMPfam_BTB"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[242283713,242285295])"	no_errors
ZNF281	23528	hgsc.bcm.edu	36	1	198644306	198644306	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	198644306	198644306	T	C	SNP	ZNF281	NM_012482	human	genbank	54_36p	-1	provisional	missense	c.1151	p.N384S	0.86	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF642	339559	hgsc.bcm.edu	36	1	40717713	40717713	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	1	40717713	40717713	G	-	DEL	ZNF642	NM_198494	human	genbank	54_36p	1	validated	frame_shift_del	c.93	p.W32fs	0.74	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[40717621,40717747])"	no_errors
ZNF691	51058	hgsc.bcm.edu	36	1	43090048	43090048	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	1	43090048	43090048	C	G	SNP	ZNF691	NM_015911	human	genbank	54_36p	1	provisional	missense	c.832	p.Q278E	0.96	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ABCA12	26154	hgsc.bcm.edu	36	2	215622593	215622593	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	215622593	215622593	A	T	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	splice_site	c.693+2	e6+2	1	-	-	-	no_errors
ABCG8	64241	hgsc.bcm.edu	36	2	43926872	43926872	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	43926872	43926872	C	T	SNP	ABCG8	NM_022437	human	genbank	54_36p	1	reviewed	silent	c.240	p.C80	0.03	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane"	-	no_errors
ACTR1B	10120	hgsc.bcm.edu	36	2	97642245	97642245	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	97642245	97642245	A	G	SNP	ACTR1B	NM_005735	human	genbank	54_36p	-1	reviewed	splice_site	c.315+2	e4+2	1	-	-	-	no_errors
ACVR1C	130399	hgsc.bcm.edu	36	2	158098773	158098773	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	158098773	158098773	C	T	SNP	ACVR1C	NM_145259	human	genbank	54_36p	-1	validated	missense	c.1385	p.R462H	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase"	"superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
AFF3	3899	hgsc.bcm.edu	36	2	99989528	99989528	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	99989528	99989528	C	T	SNP	AFF3	NM_001025108	human	genbank	54_36p	-1	reviewed	missense	c.946	p.E316K	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AFTPH	54812	hgsc.bcm.edu	36	2	64632389	64632389	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	64632389	64632389	A	G	SNP	AFTPH	NM_203437	human	genbank	54_36p	1	validated	missense	c.277	p.T93A	1	NULL	PatternScan_EF_HAND_1	-	no_errors
AGBL5	60509	hgsc.bcm.edu	36	2	27129391	27129391	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	27129391	27129391	C	A	SNP	AGBL5	NM_021831	human	genbank	54_36p	1	validated	missense	c.61	p.H21N	0.96	NULL	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	-	no_errors
AGPS	8540	hgsc.bcm.edu	36	2	178072684	178072684	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	178072684	178072684	T	A	SNP	AGPS	NM_003659	human	genbank	54_36p	1	reviewed	nonsense	c.1455	p.Y485*	1	"superfamily_FAD-linked oxidases C-terminal domain,HMMPfam_FAD-oxidase_C"	"superfamily_FAD-binding domain,HMMPfam_FAD_binding_4,superfamily_FAD-linked oxidases C-terminal domain,HMMPfam_FAD-oxidase_C"	-	no_errors
ALK	238	hgsc.bcm.edu	36	2	29270274	29270274	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	29270274	29270274	T	A	SNP	ALK	NM_004304	human	genbank	54_36p	-1	reviewed	missense	c.4183	p.T1395S	0.98	superfamily_Protein kinase-like (PK-like)	"superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_MAM,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
ANKAR	150709	hgsc.bcm.edu	36	2	190316408	190316408	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	190316408	190316408	C	G	SNP	ANKAR	NM_144708	human	genbank	54_36p	1	provisional	missense	c.3760	p.Q1254E	0.47	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
ANKRD23	200539	hgsc.bcm.edu	36	2	96871972	96871972	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	96871972	96871972	T	C	SNP	ANKRD23	NM_144994	human	genbank	54_36p	-1	reviewed	missense	c.31	p.S11G	0.99	NULL	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
AOX1	316	hgsc.bcm.edu	36	2	201215769	201215769	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	201215769	201215769	G	T	SNP	AOX1	NM_001159	human	genbank	54_36p	1	reviewed	missense	c.2847	p.K949N	1	"superfamily_Molybdenum cofactor-binding domain,HMMPfam_Ald_Xan_dh_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
AOX1	316	hgsc.bcm.edu	36	2	201242694	201242694	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	201242694	201242694	A	T	SNP	AOX1	NM_001159	human	genbank	54_36p	1	reviewed	missense	c.3950	p.D1317V	1	superfamily_Molybdenum cofactor-binding domain	###############################################################################################################################################################################################################################################################	-	no_errors
APLF	200558	hgsc.bcm.edu	36	2	68594309	68594309	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	68594309	68594309	C	T	SNP	APLF	NM_173545	human	genbank	54_36p	1	validated	silent	c.615	p.I205	0	NULL	"superfamily_SMAD_FHA,HMMPfam_zf-CCHH"	-	no_errors
APLF	200558	hgsc.bcm.edu	36	2	68658523	68658523	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	68658523	68658523	C	A	SNP	APLF	NM_173545	human	genbank	54_36p	1	validated	missense	c.1401	p.S467R	1	NULL	"superfamily_SMAD_FHA,HMMPfam_zf-CCHH"	-	no_errors
APOB	338	hgsc.bcm.edu	36	2	21084401	21084401	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	21084401	21084401	G	A	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	silent	c.8844	p.F2948	0.01	NULL	"superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081"	-	no_errors
APOB	338	hgsc.bcm.edu	36	2	21091467	21091467	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	21091467	21091467	C	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.3679	p.G1227S	1	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
ARHGAP25	9938	hgsc.bcm.edu	36	2	68906740	68906740	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	68906740	68906740	C	T	SNP	ARHGAP25	NM_001007231	human	genbank	54_36p	1	validated	silent	c.1848	p.S616	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP25	9938	hgsc.bcm.edu	36	2	68906755	68906755	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	68906755	68906755	G	T	SNP	ARHGAP25	NM_001007231	human	genbank	54_36p	1	validated	missense	c.1863	p.E621D	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ARMC9	80210	hgsc.bcm.edu	36	2	231789595	231789595	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	231789595	231789595	G	A	SNP	ARMC9	NM_025139	human	genbank	54_36p	1	validated	missense	c.349	p.D117N	1	superfamily_ARM-type_fold	"HMMSmart_LisH,superfamily_ARM-type_fold"	-	no_errors
ASB3	51130	hgsc.bcm.edu	36	2	53810179	53810179	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	53810179	53810179	G	A	SNP	ASB3	NM_016115	human	genbank	54_36p	-1	reviewed	silent	c.388	p.L130	1	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	"HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_SOCS_box"	-	no_errors
ASTL	431705	hgsc.bcm.edu	36	2	96164819	96164821	+	In_Frame_Del	DEL	GCC	GCC	-	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	GCC	GCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	96164819	96164821	GCC	-	DEL	ASTL	NM_001002036	human	genbank	54_36p	-1	validated	in_frame_del	c.241_239	p.R80in_frame_del	0.990:0.991:0.992	NULL	"superfamily_Metalloproteases (zincins) catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin"	"(deletion:cds_exon[96164817,96164878])"	no_errors
ATP5G3	518	hgsc.bcm.edu	36	2	175752224	175752224	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	175752224	175752224	C	G	SNP	ATP5G3	NM_001002258	human	genbank	54_36p	-1	reviewed	missense	c.121	p.G41R	1	NULL	"superfamily_F1F0 ATP synthase subunit C,HMMPfam_ATP-synt_C,PatternScan_ATPASE_C"	-	no_errors
ATP6V1C2	245973	hgsc.bcm.edu	36	2	10821976	10821976	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	10821976	10821976	G	A	SNP	ATP6V1C2	NM_001039362	human	genbank	54_36p	1	reviewed	missense	c.352	p.V118M	0.96	HMMPfam_V-ATPase_C	HMMPfam_V-ATPase_C	-	no_errors
ATP6V1C2	245973	hgsc.bcm.edu	36	2	10821976	10821976	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	10821976	10821976	G	C	SNP	ATP6V1C2	NM_001039362	human	genbank	54_36p	1	reviewed	missense	c.352	p.V118L	0.96	HMMPfam_V-ATPase_C	HMMPfam_V-ATPase_C	-	no_errors
BAZ2B	29994	hgsc.bcm.edu	36	2	160003066	160003066	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	160003066	160003066	G	T	SNP	BAZ2B	NM_013450	human	genbank	54_36p	-1	validated	silent	c.1287	p.S429	1	NULL	"superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
BCL11A	53335	hgsc.bcm.edu	36	2	60542989	60542989	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	60542989	60542989	G	A	SNP	BCL11A	NM_022893	human	genbank	54_36p	-1	reviewed	missense	c.562	p.H188Y	1	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
BIRC6	57448	hgsc.bcm.edu	36	2	32546564	32546564	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	32546564	32546564	G	A	SNP	BIRC6	NM_016252	human	genbank	54_36p	1	reviewed	nonsense	c.5661	p.W1887*	1	NULL	"superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con"	-	no_errors
BIRC6	57448	hgsc.bcm.edu	36	2	32681599	32681599	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	32681599	32681599	C	T	SNP	BIRC6	NM_016252	human	genbank	54_36p	1	reviewed	missense	c.14015	p.T4672M	1	"HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like"	"HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat"	-	no_errors
BMPR2	659	hgsc.bcm.edu	36	2	203128907	203128907	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	203128907	203128907	G	A	SNP	BMPR2	NM_001204	human	genbank	54_36p	1	reviewed	silent	c.2274	p.L758	1	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_SSF57302,HMMPfam_Activin_recp,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
C2orf18	54978	hgsc.bcm.edu	36	2	26852839	26852839	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	26852839	26852839	G	T	SNP	C2orf18	NM_017877	human	genbank	54_36p	1	validated	missense	c.631	p.A211S	1	NULL	"superfamily_SSF103481,HMMPfam_DUF6"	-	no_errors
C2orf44	80304	hgsc.bcm.edu	36	2	24115310	24115310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	24115310	24115310	C	T	SNP	C2orf44	NM_025203	human	genbank	54_36p	-1	validated	missense	c.559	p.A187T	1	NULL	NULL	-	no_errors
C2orf71	388939	hgsc.bcm.edu	36	2	29141430	29141431	+	In_Frame_Ins	INS	-	-	GCT	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	29141430	29141431	-	GCT	INS	C2orf71	NM_001029883	human	genbank	54_36p	-1	predicted	in_frame_ins	c.3676_3675	p.1225in_frame_insS	0.882:0.718	NULL	NULL	-	no_errors
CAD	790	hgsc.bcm.edu	36	2	27310987	27310987	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	27310987	27310987	C	T	SNP	CAD	NM_004341	human	genbank	54_36p	1	reviewed	missense	c.3716	p.T1239M	0.98	"HMMPfam_CPSase_L_D2,superfamily_SSF56059"	###############################################################################################################################################################################################################################################################	-	no_errors
CAD	790	hgsc.bcm.edu	36	2	27312788	27312788	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	27312788	27312788	C	T	SNP	CAD	NM_004341	human	genbank	54_36p	1	reviewed	missense	c.4207	p.R1403W	0.99	"HMMPfam_MGS,superfamily_SSF52335"	###############################################################################################################################################################################################################################################################	-	no_errors
CCDC141	285025	hgsc.bcm.edu	36	2	179410073	179410073	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	179410073	179410073	C	A	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	missense	c.2393	p.R798M	0.09	NULL	HMMPfam_I-set	-	no_errors
CCDC141	285025	hgsc.bcm.edu	36	2	179426450	179426450	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	179426450	179426450	C	A	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	missense	c.1482	p.R494S	1	NULL	HMMPfam_I-set	-	no_errors
CCDC88A	55704	hgsc.bcm.edu	36	2	55499508	55499508	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	55499508	55499508	C	-	DEL	CCDC88A	NM_018084	human	genbank	54_36p	-1	validated	frame_shift_del	c.112	p.E38fs	1	NULL	superfamily_Prefoldin	"(deletion:cds_exon[55499456,55499556])"	no_errors
CCDC93	54520	hgsc.bcm.edu	36	2	118419574	118419574	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	118419574	118419574	C	A	SNP	CCDC93	NM_019044	human	genbank	54_36p	-1	validated	splice_site	c.1350+1	e17+1	0.5	-	-	-	no_errors
CHN1	1123	hgsc.bcm.edu	36	2	175525161	175525161	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	175525161	175525161	C	G	SNP	CHN1	NM_001025201	human	genbank	54_36p	-1	reviewed	missense	c.35	p.R12T	1	NULL	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
CHRNA1	1134	hgsc.bcm.edu	36	2	175326592	175326592	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	175326592	175326592	G	A	SNP	CHRNA1	NM_001039523	human	genbank	54_36p	-1	reviewed	silent	c.738	p.I246	1	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
CHRND	1144	hgsc.bcm.edu	36	2	233101515	233101515	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	233101515	233101515	C	A	SNP	CHRND	NM_000751	human	genbank	54_36p	1	reviewed	missense	c.414	p.F138L	0	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
CHRND	1144	hgsc.bcm.edu	36	2	233103001	233103001	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	233103001	233103001	G	A	SNP	CHRND	NM_000751	human	genbank	54_36p	1	reviewed	missense	c.728	p.R243H	1	"HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
CLEC4F	165530	hgsc.bcm.edu	36	2	70889992	70889992	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	70889992	70889992	T	G	SNP	CLEC4F	NM_173535	human	genbank	54_36p	-1	validated	missense	c.1689	p.R563S	0	NULL	"PatternScan_C_TYPE_LECTIN_1,superfamily_C-type_lectin_fold"	-	no_errors
CLIP4	79745	hgsc.bcm.edu	36	2	29220191	29220191	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	29220191	29220191	C	T	SNP	CLIP4	NM_024692	human	genbank	54_36p	1	validated	missense	c.761	p.A254V	0.99	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
CNGA3	1261	hgsc.bcm.edu	36	2	98360684	98360684	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	98360684	98360684	G	T	SNP	CNGA3	NM_001298	human	genbank	54_36p	1	reviewed	missense	c.204	p.Q68H	0	NULL	"superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
CNGA3	1261	hgsc.bcm.edu	36	2	98379650	98379650	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	98379650	98379650	G	A	SNP	CNGA3	NM_001298	human	genbank	54_36p	1	reviewed	missense	c.1585	p.V529M	1	"HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding"	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324"	-	no_errors
CNGA3	1261	hgsc.bcm.edu	36	2	98379966	98379966	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	98379966	98379966	G	T	SNP	CNGA3	NM_001298	human	genbank	54_36p	1	reviewed	missense	c.1901	p.G634V	0.94	NULL	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324"	-	no_errors
CNTNAP5	129684	hgsc.bcm.edu	36	2	124891577	124891577	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	124891577	124891577	C	T	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	silent	c.469	p.L157	0.98	"HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	hgsc.bcm.edu	36	2	124998353	124998353	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	124998353	124998353	G	A	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	missense	c.1328	p.S443N	0.52	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
COL6A3	1293	hgsc.bcm.edu	36	2	237914353	237914353	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	237914353	237914353	G	C	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.7945	p.L2649V	1	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	-	no_errors
COL6A3	1293	hgsc.bcm.edu	36	2	237930743	237930743	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	237930743	237930743	C	T	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.6568	p.G2190R	0	NULL	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
COL6A3	1293	hgsc.bcm.edu	36	2	237950405	237950405	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	237950405	237950405	A	C	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.2819	p.V940G	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
COL6A3	1293	hgsc.bcm.edu	36	2	237968338	237968338	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	237968338	237968338	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	nonsense	c.340	p.G114*	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
COPS8	10920	hgsc.bcm.edu	36	2	237663282	237663282	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	237663282	237663282	A	G	SNP	COPS8	NM_006710	human	genbank	54_36p	1	reviewed	silent	c.237	p.Q79	1	HMMPfam_PCI_Csn8	HMMPfam_PCI_Csn8	-	no_errors
CPS1	1373	hgsc.bcm.edu	36	2	211229544	211229544	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	211229544	211229544	G	A	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	silent	c.3609	p.S1203	0.44	superfamily_Glutathione synthetase ATP-binding domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
CPS1	1373	hgsc.bcm.edu	36	2	211231582	211231582	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	211231582	211231582	C	A	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	silent	c.3681	p.T1227	1	superfamily_Glutathione synthetase ATP-binding domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
CREG2	200407	hgsc.bcm.edu	36	2	101333854	101333854	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	101333854	101333854	C	T	SNP	CREG2	NM_153836	human	genbank	54_36p	-1	validated	missense	c.836	p.R279K	0.01	NULL	superfamily_FMN_binding	-	no_errors
CRIM1	51232	hgsc.bcm.edu	36	2	36618062	36618062	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	36618062	36618062	G	A	SNP	CRIM1	NM_016441	human	genbank	54_36p	1	provisional	missense	c.2492	p.R831Q	1	"HMMPfam_VWC,HMMSmart_VWC"	"HMMSmart_IB,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Antistasin,superfamily_Antihaemostatic"	-	no_errors
CSRNP3	80034	hgsc.bcm.edu	36	2	166243961	166243961	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	166243961	166243961	G	C	SNP	CSRNP3	NM_024969	human	genbank	54_36p	1	provisional	missense	c.1210	p.V404L	0.83	NULL	NULL	-	no_errors
CTDSP1	58190	hgsc.bcm.edu	36	2	218974574	218974574	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	218974574	218974574	C	T	SNP	CTDSP1	NM_021198	human	genbank	54_36p	1	provisional	silent	c.111	p.G37	1	NULL	"superfamily_SSF56784,HMMPfam_NIF,HMMSmart_CPDc"	-	no_errors
DARS	1615	hgsc.bcm.edu	36	2	136417426	136417426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	136417426	136417426	C	T	SNP	DARS	NM_001349	human	genbank	54_36p	-1	validated	missense	c.415	p.V139I	1	"superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti"	"superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
DCTN1	1639	hgsc.bcm.edu	36	2	74448402	74448402	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	74448402	74448402	G	C	SNP	DCTN1	NM_004082	human	genbank	54_36p	-1	reviewed	missense	c.2113	p.L705V	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Spectrin repeat"	-	no_errors
DCTN1	1639	hgsc.bcm.edu	36	2	74450063	74450063	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	74450063	74450063	G	T	SNP	DCTN1	NM_004082	human	genbank	54_36p	-1	reviewed	silent	c.1456	p.R486	1	NULL	"HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Spectrin repeat,superfamily_Cap-Gly domain"	-	no_errors
DLX2	1746	hgsc.bcm.edu	36	2	172675111	172675111	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	172675111	172675111	A	G	SNP	DLX2	NM_004405	human	genbank	54_36p	-1	reviewed	splice_site	c.400+2	e1+2	1	-	-	-	no_errors
DNAH7	56171	hgsc.bcm.edu	36	2	196445387	196445387	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	196445387	196445387	G	T	SNP	DNAH7	NM_018897	human	genbank	54_36p	-1	validated	silent	c.6465	p.G2155	0.97	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT"	-	no_errors
DNAJC10	54431	hgsc.bcm.edu	36	2	183301929	183301929	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	183301929	183301929	A	G	SNP	DNAJC10	NM_018981	human	genbank	54_36p	1	provisional	missense	c.596	p.N199S	1	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1"	-	no_errors
DPP4	1803	hgsc.bcm.edu	36	2	162560109	162560109	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	162560109	162560109	C	A	SNP	DPP4	NM_001935	human	genbank	54_36p	-1	reviewed	missense	c.2072	p.R691I	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9"	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER"	-	no_errors
DTNB	1838	hgsc.bcm.edu	36	2	25531819	25531819	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	25531819	25531819	C	A	SNP	DTNB	NM_021907	human	genbank	54_36p	-1	reviewed	silent	c.1128	p.A376	0.99	NULL	"superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
DUSP19	142679	hgsc.bcm.edu	36	2	183651997	183651997	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	183651997	183651997	A	G	SNP	DUSP19	NM_080876	human	genbank	54_36p	1	validated	missense	c.91	p.I31V	0.81	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMPfam_DSPc"	-	no_errors
DUSP19	142679	hgsc.bcm.edu	36	2	183668515	183668515	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	183668515	183668515	G	C	SNP	DUSP19	NM_080876	human	genbank	54_36p	1	validated	missense	c.538	p.V180L	1	"HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
ECEL1	9427	hgsc.bcm.edu	36	2	233055839	233055840	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	233055839	233055840	CT	-	DEL	ECEL1	NM_004826	human	genbank	54_36p	-1	validated	frame_shift_del	c.1651_1650	p.V551fs	0.992:0.755	superfamily_Metalloproteases (zincins) catalytic domain	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	"(deletion:cds_exon[233055805,233055908])"	no_errors
EFEMP1	2202	hgsc.bcm.edu	36	2	55951730	55951730	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	55951730	55951730	G	A	SNP	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	missense	c.1033	p.R345W	1	"superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181"	"superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
EFEMP1	2202	hgsc.bcm.edu	36	2	55958421	55958421	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	55958421	55958421	C	G	SNP	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	missense	c.724	p.G242R	1	"HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
EFEMP1	2202	hgsc.bcm.edu	36	2	55962258	55962258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	55962258	55962258	C	A	SNP	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	missense	c.633	p.Q211H	1	"HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
EFEMP1	2202	hgsc.bcm.edu	36	2	55998334	55998335	+	Frame_Shift_Del	DEL	AG	AG	-	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	55998334	55998335	AG	-	DEL	EFEMP1	NM_001039348	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.487_486	p.Y163fs	1.000:0.994	NULL	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	"(deletion:cds_exon[55998304,55998690])"	no_errors
EIF2AK3	9451	hgsc.bcm.edu	36	2	88638527	88638527	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	88638527	88638527	G	A	SNP	EIF2AK3	NM_004836	human	genbank	54_36p	-1	validated	nonsense	c.3193	p.R1065*	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Quinoprotein alcohol dehydrogenase-like,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
EPB41L5	57669	hgsc.bcm.edu	36	2	120493254	120493254	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	120493254	120493254	A	G	SNP	EPB41L5	NM_020909	human	genbank	54_36p	1	provisional	missense	c.124	p.I42V	0.93	"HMMSmart_SM00295,superfamily_Ubiquitin-like"	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA"	-	no_errors
FAM119A	151194	hgsc.bcm.edu	36	2	208197198	208197198	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	208197198	208197198	C	T	SNP	FAM119A	NM_145280	human	genbank	54_36p	-1	validated	silent	c.147	p.A49	1	"HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
FAM124B	79843	hgsc.bcm.edu	36	2	224974492	224974492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	224974492	224974492	C	A	SNP	FAM124B	NM_024785	human	genbank	54_36p	-1	validated	missense	c.238	p.D80Y	1	NULL	NULL	-	no_errors
FAM179A	165186	hgsc.bcm.edu	36	2	29103334	29103334	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	29103334	29103334	G	A	SNP	FAM179A	NM_199280	human	genbank	54_36p	1	validated	silent	c.1965	p.L655	0.33	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
FASTKD1	79675	hgsc.bcm.edu	36	2	170102782	170102782	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	170102782	170102782	T	G	SNP	FASTKD1	NM_024622	human	genbank	54_36p	-1	validated	missense	c.2061	p.Q687H	0.94	HMMPfam_FAST_2	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
FASTKD2	22868	hgsc.bcm.edu	36	2	207360933	207360933	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	207360933	207360933	A	G	SNP	FASTKD2	NM_014929	human	genbank	54_36p	1	reviewed	missense	c.1622	p.H541R	0.1	HMMPfam_FAST_2	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
FBLN7	129804	hgsc.bcm.edu	36	2	112661454	112661454	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	112661454	112661454	C	T	SNP	FBLN7	NM_153214	human	genbank	54_36p	1	validated	missense	c.1220	p.T407M	1	NULL	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
FSHR	2492	hgsc.bcm.edu	36	2	49234922	49234922	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	49234922	49234922	T	A	SNP	FSHR	NM_000145	human	genbank	54_36p	-1	reviewed	missense	c.139	p.N47Y	0.98	"superfamily_L domain-like,HMMSmart_SM00013"	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FZD7	8324	hgsc.bcm.edu	36	2	202608551	202608551	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	202608551	202608551	C	-	DEL	FZD7	NM_003507	human	genbank	54_36p	1	reviewed	frame_shift_del	c.936	p.A313fs	1	HMMPfam_Frizzled	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled"	"(deletion:cds_exon[202607616,202609340])"	no_errors
GALNT3	2591	hgsc.bcm.edu	36	2	166334963	166334963	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	166334963	166334963	C	A	SNP	GALNT3	NM_004482	human	genbank	54_36p	-1	reviewed	missense	c.494	p.G165V	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458"	-	no_errors
GCKR	2646	hgsc.bcm.edu	36	2	27575776	27575776	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	27575776	27575776	C	T	SNP	GCKR	NM_001486	human	genbank	54_36p	1	reviewed	silent	c.504	p.A168	0.99	superfamily_SIS domain	"superfamily_SIS domain,PatternScan_GCKR"	-	no_errors
GCKR	2646	hgsc.bcm.edu	36	2	27583621	27583621	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	27583621	27583621	G	A	SNP	GCKR	NM_001486	human	genbank	54_36p	1	reviewed	missense	c.1082	p.R361H	0.98	superfamily_SIS domain	"PatternScan_GCKR,superfamily_SIS domain"	-	no_errors
GPR113	165082	hgsc.bcm.edu	36	2	26387453	26387453	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	26387453	26387453	G	A	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	missense	c.2050	p.L684F	0.01	HMMPfam_7tm_2	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR113	165082	hgsc.bcm.edu	36	2	26389455	26389455	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	26389455	26389455	G	C	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	missense	c.916	p.P306A	0.64	NULL	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GREB1	9687	hgsc.bcm.edu	36	2	11633945	11633945	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	11633945	11633945	G	T	SNP	GREB1	NM_014668	human	genbank	54_36p	1	reviewed	missense	c.470	p.C157F	1	NULL	NULL	-	no_errors
GREB1	9687	hgsc.bcm.edu	36	2	11695321	11695321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	11695321	11695321	C	T	SNP	GREB1	NM_014668	human	genbank	54_36p	1	reviewed	missense	c.5375	p.P1792L	0.89	NULL	NULL	-	no_errors
GTF3C3	9330	hgsc.bcm.edu	36	2	197348113	197348113	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	197348113	197348113	G	C	SNP	GTF3C3	NM_012086	human	genbank	54_36p	-1	provisional	missense	c.1803	p.D601E	1	superfamily_TPR-like	"HMMSmart_SM00028,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
HDAC4	9759	hgsc.bcm.edu	36	2	239689521	239689521	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	239689521	239689521	G	A	SNP	HDAC4	NM_006037	human	genbank	54_36p	-1	reviewed	silent	c.2106	p.R702	0.23	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	-	no_errors
HDAC4	9759	hgsc.bcm.edu	36	2	239750469	239750469	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	239750469	239750469	T	G	SNP	HDAC4	NM_006037	human	genbank	54_36p	-1	reviewed	missense	c.578	p.H193P	1	NULL	"HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase"	-	no_errors
HECW2	57520	hgsc.bcm.edu	36	2	196793824	196793824	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	196793824	196793824	C	T	SNP	HECW2	NM_020760	human	genbank	54_36p	-1	provisional	silent	c.4233	p.K1411	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HJURP	55355	hgsc.bcm.edu	36	2	234414835	234414835	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	234414835	234414835	C	T	SNP	HJURP	NM_018410	human	genbank	54_36p	-1	validated	missense	c.1330	p.E444K	0.01	NULL	NULL	-	no_errors
HOXD10	3236	hgsc.bcm.edu	36	2	176692084	176692084	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	176692084	176692084	A	C	SNP	HOXD10	NM_002148	human	genbank	54_36p	1	reviewed	missense	c.902	p.K301T	1	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HS1BP3	64342	hgsc.bcm.edu	36	2	20682472	20682472	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	20682472	20682472	A	T	SNP	HS1BP3	NM_022460	human	genbank	54_36p	-1	reviewed	nonsense	c.935	p.L312*	1	NULL	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	-	no_errors
IL1F10	84639	hgsc.bcm.edu	36	2	113548448	113548448	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	113548448	113548448	A	T	SNP	IL1F10	NM_032556	human	genbank	54_36p	1	reviewed	missense	c.104	p.D35V	0.08	"HMMSmart_SM00125,superfamily_Cytokine"	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1"	-	no_errors
IL1RL2	8808	hgsc.bcm.edu	36	2	102184517	102184517	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	102184517	102184517	G	A	SNP	IL1RL2	NM_003854	human	genbank	54_36p	1	reviewed	missense	c.559	p.A187T	0	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
IMMT	10989	hgsc.bcm.edu	36	2	86251952	86251952	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	86251952	86251952	G	A	SNP	IMMT	NM_006839	human	genbank	54_36p	-1	validated	missense	c.449	p.S150F	1	HMMPfam_Mitofilin	HMMPfam_Mitofilin	-	no_errors
INPP5D	3635	hgsc.bcm.edu	36	2	233633530	233633530	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	233633530	233633530	G	C	SNP	INPP5D	ENST00000359570	human	ensembl	54_36p	1	known	missense	c.98	p.S33T	1	"HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF55550"	"HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF55550,superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos"	-	no_errors
IRS1	3667	hgsc.bcm.edu	36	2	227369507	227369507	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	227369507	227369507	T	C	SNP	IRS1	NM_005544	human	genbank	54_36p	-1	validated	missense	c.2192	p.D731G	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
IRS1	3667	hgsc.bcm.edu	36	2	227369510	227369511	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	227369510	227369511	CC	-	DEL	IRS1	NM_005544	human	genbank	54_36p	-1	validated	frame_shift_del	c.2189_2188	p.G730fs	0.128:0.050	NULL	"HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729"	"(deletion:cds_exon[227367970,227371698])"	no_errors
ITGA4	3676	hgsc.bcm.edu	36	2	182095165	182095165	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	182095165	182095165	C	A	SNP	ITGA4	NM_000885	human	genbank	54_36p	1	reviewed	missense	c.1925	p.P642H	1	"HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
KCMF1	56888	hgsc.bcm.edu	36	2	85133899	85133899	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	85133899	85133899	A	-	DEL	KCMF1	NM_020122	human	genbank	54_36p	1	validated	frame_shift_del	c.1002	p.S335fs	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"(deletion:cds_exon[85133782,85134043])"	no_errors
KCNIP3	30818	hgsc.bcm.edu	36	2	95403774	95403774	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	95403774	95403774	G	-	DEL	KCNIP3	NM_013434	human	genbank	54_36p	1	reviewed	frame_shift_del	c.185	p.S62fs	1	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	"(deletion:cds_exon[95403771,95403895])"	no_errors
KCNIP3	30818	hgsc.bcm.edu	36	2	95403795	95403795	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	95403795	95403795	T	C	SNP	KCNIP3	NM_013434	human	genbank	54_36p	1	reviewed	missense	c.206	p.L69P	1	NULL	"HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand"	-	no_errors
KCNIP3	30818	hgsc.bcm.edu	36	2	95403838	95403838	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	95403838	95403838	G	A	SNP	KCNIP3	NM_013434	human	genbank	54_36p	1	reviewed	silent	c.249	p.Q83	1	superfamily_EF-hand	"HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand"	-	no_errors
KIAA1841	84542	hgsc.bcm.edu	36	2	61168827	61168828	+	Frame_Shift_Del	DEL	TG	TG	-	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	61168827	61168828	TG	-	DEL	KIAA1841	NM_032506	human	genbank	54_36p	1	validated	frame_shift_del	c.920_921	p.F308fs	0.983:0.086	NULL	NULL	"(deletion:cds_exon[61168798,61168884])"	no_errors
KLF11	8462	hgsc.bcm.edu	36	2	10105902	10105902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	10105902	10105902	C	T	SNP	KLF11	NM_003597	human	genbank	54_36p	1	validated	silent	c.987	p.F329	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
KLHL29	114818	hgsc.bcm.edu	36	2	23768052	23768052	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	23768052	23768052	C	T	SNP	KLHL29	ENST00000288548	human	ensembl	54_36p	1	known	silent	c.423	p.S141	0.33	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
KLHL29	114818	hgsc.bcm.edu	36	2	23779600	23779601	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	23779600	23779601	-	T	INS	KLHL29	ENST00000288548	human	ensembl	54_36p	1	known	frame_shift_ins	c.1483_1484	p.P496fs	1.000:1.000	"HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain"	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_Kelch_2,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
KLHL29	114818	hgsc.bcm.edu	36	2	23779600	23779601	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	23779600	23779601	-	T	INS	KLHL29	ENST00000288548	human	ensembl	54_36p	1	known	frame_shift_ins	c.1483_1484	p.P496fs	1.000:1.000	"HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain"	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_Kelch_2,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
LCLAT1	253558	hgsc.bcm.edu	36	2	30716603	30716603	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	30716603	30716603	C	T	SNP	LCLAT1	NM_182551	human	genbank	54_36p	1	validated	missense	c.859	p.R287W	0.88	NULL	"superfamily_Glycerol-3-phosphate (1)-acyltransferase,HMMPfam_Acyltransferase,HMMSmart_SM00563"	-	no_errors
LCT	3938	hgsc.bcm.edu	36	2	136291618	136291618	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	136291618	136291618	C	A	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	missense	c.1470	p.E490D	0.95	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat"	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2"	-	no_errors
LRP1B	53353	hgsc.bcm.edu	36	2	140975891	140975891	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	140975891	140975891	A	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.8685	p.F2895L	1	"superfamily_SSF63825,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	hgsc.bcm.edu	36	2	141176508	141176508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	141176508	141176508	G	C	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.6108	p.S2036R	0.95	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	hgsc.bcm.edu	36	2	141176527	141176527	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	141176527	141176527	T	C	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.6089	p.E2030G	0.99	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	hgsc.bcm.edu	36	2	141341666	141341666	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	141341666	141341666	A	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.4542	p.F1514L	1	"HMMPfam_Ldl_recept_b,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	hgsc.bcm.edu	36	2	141494100	141494100	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	141494100	141494100	T	G	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.1831	p.N611H	1	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	hgsc.bcm.edu	36	2	169693767	169693767	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	169693767	169693767	A	T	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	splice_site	c.13800+2	e78+2	1	-	-	-	no_errors
LRP2	4036	hgsc.bcm.edu	36	2	169770382	169770382	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	169770382	169770382	C	G	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.7568	p.W2523S	1	"superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b"	###############################################################################################################################################################################################################################################################	-	no_errors
LRPPRC	10128	hgsc.bcm.edu	36	2	44026844	44026844	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	44026844	44026844	C	T	SNP	LRPPRC	NM_133259	human	genbank	54_36p	-1	reviewed	missense	c.2122	p.D708N	0.99	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_PPR"	-	no_errors
MAPRE3	22924	hgsc.bcm.edu	36	2	27102020	27102021	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	27102020	27102021	-	C	INS	MAPRE3	NM_012326	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.535_536	p.C182fs	0.987:0.998	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMPfam_EB1"	-	no_errors
MARCO	8685	hgsc.bcm.edu	36	2	119448588	119448588	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	119448588	119448588	C	G	SNP	MARCO	NM_006770	human	genbank	54_36p	1	reviewed	missense	c.590	p.P197R	0.99	HMMPfam_Collagen	"HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
MDH1B	130752	hgsc.bcm.edu	36	2	207333927	207333927	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	207333927	207333927	T	C	SNP	MDH1B	NM_001039845	human	genbank	54_36p	-1	validated	silent	c.78	p.Q26	1	NULL	"superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_LDH C-terminal domain-like"	-	no_errors
MFSD6	54842	hgsc.bcm.edu	36	2	191009562	191009562	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	191009562	191009562	T	G	SNP	MFSD6	NM_017694	human	genbank	54_36p	1	validated	missense	c.562	p.F188V	0	superfamily_MFS_gen_substrate_transporter	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
MGAT5	4249	hgsc.bcm.edu	36	2	134728487	134728487	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	134728487	134728487	G	C	SNP	MGAT5	NM_002410	human	genbank	54_36p	1	validated	missense	c.43	p.G15R	1	NULL	NULL	-	no_errors
MGAT5	4249	hgsc.bcm.edu	36	2	134791632	134791633	+	Frame_Shift_Del	DEL	GA	GA	-	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	134791632	134791633	GA	-	DEL	MGAT5	NM_002410	human	genbank	54_36p	1	validated	frame_shift_del	c.469_470	p.E157fs	1.000:1.000	NULL	NULL	"(deletion:cds_exon[134791570,134791646])"	no_errors
MOGAT1	116255	hgsc.bcm.edu	36	2	223261438	223261439	+	Frame_Shift_Del	DEL	AA	AA	-	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	223261438	223261439	AA	-	DEL	MOGAT1	NM_058165	human	genbank	54_36p	1	validated	frame_shift_del	c.226_227	p.N77fs	0.721:0.734	HMMPfam_DAGAT	HMMPfam_DAGAT	"(deletion:cds_exon[223261307,223261485])"	no_errors
MYL1	4632	hgsc.bcm.edu	36	2	210867218	210867218	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	210867218	210867218	G	T	SNP	MYL1	NM_079420	human	genbank	54_36p	-1	reviewed	silent	c.474	p.T158	0.84	"superfamily_EF-hand,HMMSmart_SM00054"	"superfamily_EF-hand,HMMSmart_SM00054"	-	no_errors
MYO3B	140469	hgsc.bcm.edu	36	2	170764928	170764928	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	170764928	170764928	C	G	SNP	MYO3B	NM_138995	human	genbank	54_36p	1	provisional	missense	c.209	p.A70G	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO7B	4648	hgsc.bcm.edu	36	2	128109807	128109807	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	128109807	128109807	G	A	SNP	MYO7B	NM_001080527	human	genbank	54_36p	1	provisional	missense	c.5783	p.R1928Q	0.28	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	###############################################################################################################################################################################################################################################################	-	no_errors
MYT1L	23040	hgsc.bcm.edu	36	2	1870318	1870318	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	1870318	1870318	C	A	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	missense	c.2585	p.S862I	1	HMMPfam_MYT1	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1"	-	no_errors
NAT8B	51471	hgsc.bcm.edu	36	2	73781752	73781752	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	73781752	73781752	G	A	SNP	ENSG00000204872	ENST00000377712	human	ensembl	54_36p	-1	novel	silent	c.117	p.A39	0.07	superfamily_Acyl-CoA N-acyltransferases (Nat)	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1"	-	no_errors
NCK2	8440	hgsc.bcm.edu	36	2	105837967	105837967	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	105837967	105837967	A	T	SNP	NCK2	NM_001004720	human	genbank	54_36p	1	reviewed	missense	c.16	p.I6F	1	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	-	no_errors
NCKAP1	10787	hgsc.bcm.edu	36	2	183556332	183556332	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	183556332	183556332	C	A	SNP	NCKAP1	NM_205842	human	genbank	54_36p	-1	validated	missense	c.1046	p.R349L	1	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NCOA1	8648	hgsc.bcm.edu	36	2	24781576	24781576	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	24781576	24781576	C	T	SNP	NCOA1	NM_003743	human	genbank	54_36p	1	reviewed	missense	c.1067	p.P356L	1	superfamily_PYP-like sensor domain (PAS domain)	###############################################################################################################################################################################################################################################################	-	no_errors
NEUROD1	4760	hgsc.bcm.edu	36	2	182251168	182251169	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	182251168	182251169	-	G	INS	NEUROD1	NM_002500	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.665_664	p.Q222fs	1.000:1.000	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
NLRC4	58484	hgsc.bcm.edu	36	2	32329080	32329080	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	32329080	32329080	G	A	SNP	NLRC4	NM_021209	human	genbank	54_36p	-1	validated	nonsense	c.1357	p.R453*	0.8	NULL	"HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like"	-	no_errors
NR4A2	4929	hgsc.bcm.edu	36	2	156892706	156892706	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	156892706	156892706	T	-	DEL	NR4A2	NM_006186	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1061	p.E354fs	1	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"(deletion:cds_exon[156892609,156892772])"	no_errors
NR4A2	4929	hgsc.bcm.edu	36	2	156894619	156894620	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	156894619	156894620	-	G	INS	NR4A2	NM_006186	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.326_325	p.Q109fs	1.000:1.000	NULL	"HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
NRBP1	29959	hgsc.bcm.edu	36	2	27516209	27516209	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	27516209	27516209	G	C	SNP	NRBP1	NM_013392	human	genbank	54_36p	1	validated	missense	c.976	p.A326P	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase"	-	no_errors
NRXN1	9378	hgsc.bcm.edu	36	2	50704226	50704226	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	50704226	50704226	T	A	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	silent	c.864	p.G288	1	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_SM00294"	-	no_errors
OTOF	9381	hgsc.bcm.edu	36	2	26537068	26537068	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	26537068	26537068	T	C	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.5764	p.N1922D	1	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB"	-	no_errors
OTOF	9381	hgsc.bcm.edu	36	2	26537253	26537253	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	26537253	26537253	G	A	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.5683	p.R1895C	1	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB"	-	no_errors
OTOF	9381	hgsc.bcm.edu	36	2	26549843	26549843	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	26549843	26549843	A	-	DEL	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3505	p.S1169fs	1	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI"	"(deletion:cds_exon[26549778,26549939])"	no_errors
OTOF	9381	hgsc.bcm.edu	36	2	26549844	26549845	+	In_Frame_Ins	INS	-	-	TCA	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	26549844	26549845	-	TCA	INS	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.3504_3503	p.Q1168in_frame_insHE	1.000:1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
OTOF	9381	hgsc.bcm.edu	36	2	26592844	26592844	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	26592844	26592844	A	C	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.455	p.L152R	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
PASK	23178	hgsc.bcm.edu	36	2	241695558	241695558	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	241695558	241695558	G	A	SNP	PASK	NM_015148	human	genbank	54_36p	-1	validated	nonsense	c.3697	p.Q1233*	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PAX3	5077	hgsc.bcm.edu	36	2	222793215	222793215	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	222793215	222793215	T	A	SNP	PAX3	NM_181459	human	genbank	54_36p	-1	reviewed	missense	c.1061	p.Y354F	1	NULL	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PAX3	5077	hgsc.bcm.edu	36	2	222805126	222805126	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	222805126	222805126	C	T	SNP	PAX3	NM_181459	human	genbank	54_36p	-1	reviewed	missense	c.707	p.R236H	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
PDE1A	5136	hgsc.bcm.edu	36	2	183095267	183095267	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	183095267	183095267	A	G	SNP	PDE1A	NM_005019	human	genbank	54_36p	-1	validated	missense	c.82	p.W28R	1	NULL	"HMMPfam_PDEase_I_N,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDK1	5163	hgsc.bcm.edu	36	2	173168901	173168901	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	173168901	173168901	C	T	SNP	PDK1	NM_002610	human	genbank	54_36p	1	reviewed	silent	c.1269	p.P423	0.98	NULL	"superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387"	-	no_errors
PELI1	57162	hgsc.bcm.edu	36	2	64175555	64175555	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	64175555	64175555	C	A	SNP	PELI1	NM_020651	human	genbank	54_36p	-1	validated	nonsense	c.1042	p.G348*	1	HMMPfam_Pellino	HMMPfam_Pellino	-	no_errors
PER2	8864	hgsc.bcm.edu	36	2	238831994	238831994	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	238831994	238831994	T	C	SNP	PER2	NM_022817	human	genbank	54_36p	-1	reviewed	missense	c.1658	p.K553R	0	NULL	"HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3"	-	no_errors
PFN4	375189	hgsc.bcm.edu	36	2	24198905	24198905	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	24198905	24198905	C	T	SNP	PFN4	NM_199346	human	genbank	54_36p	-1	provisional	missense	c.5	p.S2N	0.99	NULL	"superfamily_Profilin (actin-binding protein),HMMPfam_Profilin,HMMSmart_SM00392"	-	no_errors
PGAP1	80055	hgsc.bcm.edu	36	2	197417024	197417025	+	Frame_Shift_Ins	INS	-	-	TA	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	197417024	197417025	-	TA	INS	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	frame_shift_ins	c.2358_2357	p.R786fs	0.947:0.808	NULL	"HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases"	-	no_errors
PGAP1	80055	hgsc.bcm.edu	36	2	197445444	197445444	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	197445444	197445444	A	C	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	missense	c.1694	p.F565C	1	NULL	"HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases"	-	no_errors
PGAP1	80055	hgsc.bcm.edu	36	2	197445444	197445444	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	197445444	197445444	A	C	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	missense	c.1694	p.F565C	1	NULL	"HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases"	-	no_errors
PIKFYVE	200576	hgsc.bcm.edu	36	2	208909061	208909061	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	208909061	208909061	G	A	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	missense	c.4412	p.R1471K	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PLB1	151056	hgsc.bcm.edu	36	2	28702847	28702847	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	28702847	28702847	G	T	SNP	PLB1	NM_153021	human	genbank	54_36p	1	validated	missense	c.3628	p.V1210F	0.02	"superfamily_SGNH hydrolase,HMMPfam_Lipase_GDSL"	"superfamily_SGNH hydrolase,PatternScan_LIPASE_GDSL_SER,HMMPfam_Lipase_GDSL"	-	no_errors
PLCD4	84812	hgsc.bcm.edu	36	2	219206683	219206683	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	219206683	219206683	T	C	SNP	PLCD4	NM_032726	human	genbank	54_36p	1	provisional	missense	c.1561	p.S521P	1	"superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149"	###############################################################################################################################################################################################################################################################	-	no_errors
PLEK	5341	hgsc.bcm.edu	36	2	68469035	68469035	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	68469035	68469035	T	C	SNP	PLEK	NM_002664	human	genbank	54_36p	1	validated	missense	c.670	p.F224L	1	superfamily_SSF46785	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP"	-	no_errors
PMS1	5378	hgsc.bcm.edu	36	2	190416992	190416992	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	190416992	190416992	C	T	SNP	PMS1	NM_000534	human	genbank	54_36p	1	reviewed	silent	c.640	p.L214	1	"superfamily_ATP_bd_ATPase,superfamily_Ribosomal_S5_D2-typ_fold"	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_mis_repair,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
POLR1B	84172	hgsc.bcm.edu	36	2	113042125	113042125	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	113042125	113042125	G	A	SNP	POLR1B	NM_019014	human	genbank	54_36p	1	validated	silent	c.1857	p.L619	1	"superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpa2_4"	###############################################################################################################################################################################################################################################################	-	no_errors
PPIG	9360	hgsc.bcm.edu	36	2	170201655	170201655	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	170201655	170201655	A	G	SNP	PPIG	NM_004792	human	genbank	54_36p	1	validated	silent	c.1641	p.R547	1	NULL	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
PREB	10113	hgsc.bcm.edu	36	2	27208046	27208046	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	27208046	27208046	C	T	SNP	PREB	NM_013388	human	genbank	54_36p	-1	reviewed	missense	c.1157	p.R386Q	0.99	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like"	-	no_errors
PRKD3	23683	hgsc.bcm.edu	36	2	37334916	37334916	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	37334916	37334916	G	T	SNP	PRKD3	NM_005813	human	genbank	54_36p	-1	reviewed	missense	c.2434	p.L812M	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
PROM2	150696	hgsc.bcm.edu	36	2	95308477	95308480	+	Frame_Shift_Del	DEL	GCCC	GCCC	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	GCCC	GCCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	95308477	95308480	GCCC	-	DEL	PROM2	NM_144707	human	genbank	54_36p	1	provisional	frame_shift_del	c.1132_1135	p.A378fs	0.082:0.022:0.002:0.001	HMMPfam_Prominin	"HMMPfam_Prominin,PatternScan_PA2_HIS"	"(deletion:cds_exon[95308460,95308619])"	no_errors
PSME4	23198	hgsc.bcm.edu	36	2	53947483	53947483	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	53947483	53947483	C	T	SNP	PSME4	NM_014614	human	genbank	54_36p	-1	validated	missense	c.4960	p.A1654T	1	NULL	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
PTPRN	5798	hgsc.bcm.edu	36	2	219870250	219870250	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	219870250	219870250	G	A	SNP	PTPRN	NM_002846	human	genbank	54_36p	-1	reviewed	silent	c.2037	p.C679	0.97	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PUM2	23369	hgsc.bcm.edu	36	2	20357651	20357651	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	20357651	20357651	T	C	SNP	PUM2	NM_015317	human	genbank	54_36p	-1	provisional	silent	c.1119	p.Q373	1	NULL	"superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025"	-	no_errors
RAD51AP2	729475	hgsc.bcm.edu	36	2	17555666	17555666	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	17555666	17555666	C	T	SNP	RAD51AP2	NM_001099218	human	genbank	54_36p	-1	provisional	silent	c.3366	p.P1122	1	NULL	NULL	-	no_errors
RBKS	64080	hgsc.bcm.edu	36	2	27904043	27904043	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	27904043	27904043	C	T	SNP	RBKS	NM_022128	human	genbank	54_36p	-1	reviewed	silent	c.690	p.Q230	0.1	"HMMPfam_PfkB,superfamily_SSF53613"	"PatternScan_PFKB_KINASES_1,HMMPfam_PfkB,superfamily_SSF53613,PatternScan_PFKB_KINASES_2"	-	no_errors
RBM43	375287	hgsc.bcm.edu	36	2	151816334	151816334	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	151816334	151816334	T	-	DEL	RBM43	NM_198557	human	genbank	54_36p	-1	validated	frame_shift_del	c.406	p.I136fs	0.99	NULL	NULL	"(deletion:cds_exon[151815666,151816424])"	no_errors
REL	5966	hgsc.bcm.edu	36	2	60997526	60997526	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	60997526	60997526	A	G	SNP	REL	NM_002908	human	genbank	54_36p	1	validated	silent	c.405	p.K135	1	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD"	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD,PatternScan_REL_1,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	-	no_errors
REV1	51455	hgsc.bcm.edu	36	2	99386651	99386651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	99386651	99386651	C	G	SNP	REV1	NM_016316	human	genbank	54_36p	-1	reviewed	silent	c.3105	p.A1035	0.13	NULL	"HMMPfam_BRCT,superfamily_BRCT domain,HMMSmart_SM00292,superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain"	-	no_errors
RIF1	55183	hgsc.bcm.edu	36	2	152033312	152033312	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	152033312	152033312	G	C	SNP	RIF1	NM_018151	human	genbank	54_36p	1	validated	splice_site	c.6825+1	e31+1	1	-	-	-	no_errors
RNF25	64320	hgsc.bcm.edu	36	2	219237067	219237067	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	219237067	219237067	T	C	SNP	RNF25	NM_022453	human	genbank	54_36p	-1	reviewed	missense	c.1237	p.R413G	1	NULL	"HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RNF25	64320	hgsc.bcm.edu	36	2	219237390	219237390	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	219237390	219237390	G	A	SNP	RNF25	NM_022453	human	genbank	54_36p	-1	reviewed	missense	c.914	p.P305L	0.05	NULL	"HMMSmart_SM00184,HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
SCN1A	6323	hgsc.bcm.edu	36	2	166611528	166611528	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	166611528	166611528	G	A	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	nonsense	c.1375	p.Q459*	1	NULL	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ,PatternScan_RIBONUCLEASE_P"	-	no_errors
SCN2A	6326	hgsc.bcm.edu	36	2	165878864	165878864	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	165878864	165878864	G	A	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	silent	c.1383	p.Q461	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN2A	6326	hgsc.bcm.edu	36	2	165907051	165907051	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	165907051	165907051	G	A	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	splice_site	c.2389-1	e14-1	1	-	-	-	no_errors
SCN3A	6328	hgsc.bcm.edu	36	2	165655734	165655734	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	165655734	165655734	G	A	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	silent	c.5175	p.D1725	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
SEMA4F	10505	hgsc.bcm.edu	36	2	74754329	74754329	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	74754329	74754329	G	C	SNP	SEMA4F	NM_004263	human	genbank	54_36p	1	provisional	missense	c.688	p.A230P	0.4	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat"	-	no_errors
SFXN5	94097	hgsc.bcm.edu	36	2	73139227	73139227	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	73139227	73139227	A	G	SNP	SFXN5	NM_144579	human	genbank	54_36p	-1	validated	missense	c.109	p.F37L	1	HMMPfam_Mtc	HMMPfam_Mtc	-	no_errors
SH3BP4	23677	hgsc.bcm.edu	36	2	235614424	235614424	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	235614424	235614424	A	T	SNP	SH3BP4	NM_014521	human	genbank	54_36p	1	reviewed	missense	c.272	p.E91V	1	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
SLC16A14	151473	hgsc.bcm.edu	36	2	230619270	230619270	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	230619270	230619270	C	T	SNP	SLC16A14	NM_152527	human	genbank	54_36p	-1	provisional	silent	c.816	p.G272	0	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC19A3	80704	hgsc.bcm.edu	36	2	228271949	228271949	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	228271949	228271949	C	A	SNP	SLC19A3	NM_025243	human	genbank	54_36p	-1	validated	silent	c.726	p.G242	0	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Folate_carrier"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Folate_carrier"	-	no_errors
SLC35F5	80255	hgsc.bcm.edu	36	2	114216747	114216747	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	114216747	114216747	A	-	DEL	SLC35F5	NM_025181	human	genbank	54_36p	-1	provisional	frame_shift_del	c.742	p.C248fs	1	superfamily_Multidrug resistance efflux transporter EmrE	"superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_DUF6"	"(deletion:cds_exon[114216739,114216926])"	no_errors
SLC4A5	57835	hgsc.bcm.edu	36	2	74311894	74311894	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	74311894	74311894	C	G	SNP	SLC4A5	NM_021196	human	genbank	54_36p	-1	reviewed	missense	c.2824	p.V942L	0.95	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC8A1	6546	hgsc.bcm.edu	36	2	40245569	40245569	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	40245569	40245569	C	-	DEL	SLC8A1	NM_021097	human	genbank	54_36p	-1	validated	frame_shift_del	c.2098	p.E700fs	1	NULL	"HMMPfam_Na_Ca_ex,HMMPfam_Calx-beta,HMMSmart_SM00237"	"(deletion:cds_exon[40245498,40245628])"	no_errors
SLC8A1	6546	hgsc.bcm.edu	36	2	40510125	40510125	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	40510125	40510125	C	A	SNP	SLC8A1	NM_021097	human	genbank	54_36p	-1	validated	missense	c.800	p.R267L	1	NULL	"HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_Na_Ca_ex"	-	no_errors
SLC9A4	389015	hgsc.bcm.edu	36	2	102509162	102509162	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	102509162	102509162	A	C	SNP	SLC9A4	NM_001011552	human	genbank	54_36p	1	validated	missense	c.1963	p.N655H	0.99	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
SMARCAL1	50485	hgsc.bcm.edu	36	2	216988268	216988268	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	216988268	216988268	C	G	SNP	SMARCAL1	NM_014140	human	genbank	54_36p	1	reviewed	missense	c.596	p.P199R	0	NULL	"HMMPfam_HARP,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
SMARCAL1	50485	hgsc.bcm.edu	36	2	217020051	217020051	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	217020051	217020051	G	A	SNP	SMARCAL1	NM_014140	human	genbank	54_36p	1	reviewed	silent	c.1776	p.T592	0.41	"HMMSmart_DEXDc,superfamily_SSF52540"	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HARP,HMMSmart_DEXDc,superfamily_SSF52540"	-	no_errors
SNED1	25992	hgsc.bcm.edu	36	2	241653476	241653479	+	Frame_Shift_Del	DEL	CAGG	CAGG	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	CAGG	CAGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	241653476	241653479	CAGG	-	DEL	SNED1	NM_001080437	human	genbank	54_36p	1	provisional	frame_shift_del	c.2802_2805	p.Q936fs	0.891:0.889:0.900:0.944	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[241653388,241653684])"	no_errors
SNRNP200	23020	hgsc.bcm.edu	36	2	96314752	96314752	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	96314752	96314752	C	G	SNP	SNRNP200	NM_014014	human	genbank	54_36p	-1	validated	missense	c.4057	p.G1353R	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMSmart_SM00611,HMMPfam_Sec63"	-	no_errors
SOS1	6654	hgsc.bcm.edu	36	2	39066517	39066517	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	39066517	39066517	G	C	SNP	SOS1	NM_005633	human	genbank	54_36p	-1	reviewed	silent	c.3954	p.S1318	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SPEG	10290	hgsc.bcm.edu	36	2	220024117	220024117	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	220024117	220024117	C	A	SNP	SPEG	NM_005876	human	genbank	54_36p	1	validated	missense	c.2129	p.S710Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SPHKAP	80309	hgsc.bcm.edu	36	2	228591546	228591546	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	228591546	228591546	C	T	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	silent	c.2268	p.P756	0	NULL	HMMPfam_AKAP_110	-	no_errors
SPHKAP	80309	hgsc.bcm.edu	36	2	228594672	228594672	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	228594672	228594672	G	A	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	silent	c.696	p.N232	0.21	NULL	HMMPfam_AKAP_110	-	no_errors
SPR	6697	hgsc.bcm.edu	36	2	72972064	72972064	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	72972064	72972064	A	T	SNP	SPR	NM_003124	human	genbank	54_36p	1	reviewed	nonsense	c.676	p.K226*	0.3	superfamily_NAD(P)-bd	"superfamily_NAD(P)-bd,HMMPfam_adh_short"	-	no_errors
SPRED2	200734	hgsc.bcm.edu	36	2	65412678	65412678	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	65412678	65412678	A	G	SNP	SPRED2	NM_181784	human	genbank	54_36p	-1	validated	missense	c.385	p.S129P	1	NULL	"HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_Sprouty"	-	no_errors
SPTBN1	6711	hgsc.bcm.edu	36	2	54723706	54723706	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	54723706	54723706	T	A	SNP	SPTBN1	NM_003128	human	genbank	54_36p	1	reviewed	nonsense	c.3941	p.L1314*	1	"HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SPTBN1	6711	hgsc.bcm.edu	36	2	54727846	54727846	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	54727846	54727846	C	T	SNP	SPTBN1	NM_003128	human	genbank	54_36p	1	reviewed	silent	c.4941	p.T1647	0.02	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like"	-	no_errors
ST6GAL2	84620	hgsc.bcm.edu	36	2	106826760	106826760	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	106826760	106826760	C	T	SNP	ST6GAL2	NM_032528	human	genbank	54_36p	-1	validated	missense	c.106	p.A36T	0	NULL	"HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase"	-	no_errors
STAT1	6772	hgsc.bcm.edu	36	2	191552805	191552805	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	2	191552805	191552805	C	G	SNP	STAT1	NM_007315	human	genbank	54_36p	-1	reviewed	missense	c.1665	p.W555C	1	"HMMPfam_STAT_bind,superfamily_p53-like transcription factors"	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2"	-	no_errors
STK11IP	114790	hgsc.bcm.edu	36	2	220171079	220171079	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	220171079	220171079	C	A	SNP	STK11IP	NM_052902	human	genbank	54_36p	1	validated	silent	c.27	p.P9	0.72	NULL	"superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1"	-	no_start_codon
STON1-GTF2A1L	286749	hgsc.bcm.edu	36	2	48701926	48701926	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	48701926	48701926	G	A	SNP	STON1-GTF2A1L	NM_172311	human	genbank	54_36p	1	reviewed	silent	c.2352	p.S784	0.82	HMMPfam_TFIIA	"superfamily_AP50,HMMPfam_Adap_comp_sub,superfamily_TFIIA_helical,HMMPfam_TFIIA,superfamily_TFIIA_betabarrel"	-	no_errors
TAF1B	9014	hgsc.bcm.edu	36	2	9962475	9962475	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	9962475	9962475	G	-	DEL	TAF1B	NM_005680	human	genbank	54_36p	1	reviewed	frame_shift_del	c.844	p.V282fs	0.01	NULL	NULL	"(deletion:cds_exon[9962439,9962586])"	no_errors
TET3	200424	hgsc.bcm.edu	36	2	74180209	74180211	+	In_Frame_Del	DEL	AGG	AGG	-	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	AGG	AGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	74180209	74180211	AGG	-	DEL	TET3	NM_144993	human	genbank	54_36p	1	provisional	in_frame_del	c.3161_3163	p.E1055in_frame_del	1.000:1.000:1.000	NULL	NULL	"(deletion:cds_exon[74179911,74180247])"	no_errors
TFCP2L1	29842	hgsc.bcm.edu	36	2	121755283	121755283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	121755283	121755283	C	T	SNP	TFCP2L1	NM_014553	human	genbank	54_36p	-1	validated	missense	c.97	p.E33K	1	HMMPfam_CP2	"HMMPfam_CP2,superfamily_SAM_homology"	-	no_errors
THADA	63892	hgsc.bcm.edu	36	2	43367627	43367627	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	43367627	43367627	T	C	SNP	THADA	NM_001083953	human	genbank	54_36p	-1	validated	silent	c.5088	p.T1696	0.35	NULL	"superfamily_ARM repeat,HMMPfam_DUF2428,PatternScan_FORMATE_NITRITE_TP_1"	-	no_errors
THADA	63892	hgsc.bcm.edu	36	2	43657867	43657867	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	43657867	43657867	G	A	SNP	THADA	NM_001083953	human	genbank	54_36p	-1	validated	missense	c.835	p.R279C	0	NULL	"PatternScan_FORMATE_NITRITE_TP_1,superfamily_ARM repeat,HMMPfam_DUF2428"	-	no_errors
THADA	63892	hgsc.bcm.edu	36	2	43657870	43657870	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	43657870	43657870	G	A	SNP	THADA	NM_001083953	human	genbank	54_36p	-1	validated	missense	c.832	p.L278F	0.32	NULL	"PatternScan_FORMATE_NITRITE_TP_1,superfamily_ARM repeat,HMMPfam_DUF2428"	-	no_errors
THAP4	51078	hgsc.bcm.edu	36	2	242194401	242194401	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	242194401	242194401	C	T	SNP	THAP4	NM_015963	human	genbank	54_36p	-1	provisional	splice_site	c.1400+1	e3+1	1	-	-	-	no_errors
THSD7B	80731	hgsc.bcm.edu	36	2	137568942	137568942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	137568942	137568942	C	T	SNP	THSD7B	NM_001080427	human	genbank	54_36p	1	provisional	missense	c.887	p.T296I	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
THSD7B	80731	hgsc.bcm.edu	36	2	138133773	138133773	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	138133773	138133773	C	A	SNP	THSD7B	NM_001080427	human	genbank	54_36p	1	provisional	missense	c.4358	p.S1453Y	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	-	no_errors
TMEM131	23505	hgsc.bcm.edu	36	2	97780348	97780348	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	97780348	97780348	G	A	SNP	TMEM131	NM_015348	human	genbank	54_36p	-1	validated	silent	c.2782	p.L928	0.92	NULL	NULL	-	no_errors
TMEM177	80775	hgsc.bcm.edu	36	2	120155729	120155729	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	120155729	120155729	A	C	SNP	TMEM177	NM_001105198	human	genbank	54_36p	1	validated	missense	c.830	p.N277T	1	NULL	NULL	-	no_errors
TMEM18	129787	hgsc.bcm.edu	36	2	662847	662847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	662847	662847	C	A	SNP	TMEM18	NM_152834	human	genbank	54_36p	-1	validated	missense	c.194	p.C65F	0.99	NULL	NULL	-	no_errors
TMEM37	140738	hgsc.bcm.edu	36	2	119911121	119911122	+	In_Frame_Ins	INS	-	-	GTGTGC	rs3217464	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	119911121	119911122	-	GTGTGC	INS	TMEM37	NM_183240	human	genbank	54_36p	1	validated	in_frame_ins	c.208_209	p.T70in_frame_insSVP	0.975:0.000	NULL	NULL	-	no_errors
TNS1	7145	hgsc.bcm.edu	36	2	218420723	218420723	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	218420723	218420723	T	C	SNP	TNS1	NM_022648	human	genbank	54_36p	-1	reviewed	missense	c.2387	p.Y796C	0.96	NULL	"superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB"	-	no_errors
TPO	7173	hgsc.bcm.edu	36	2	1486754	1486754	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	2	1486754	1486754	A	T	SNP	TPO	NM_000547	human	genbank	54_36p	1	reviewed	missense	c.2414	p.H805L	0.06	"HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM54	57159	hgsc.bcm.edu	36	2	27375038	27375038	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	27375038	27375038	C	T	SNP	TRIM54	NM_032546	human	genbank	54_36p	1	reviewed	missense	c.268	p.H90Y	1	superfamily_SSF57850	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX"	-	no_errors
TRIP12	9320	hgsc.bcm.edu	36	2	230377159	230377159	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	230377159	230377159	A	T	SNP	TRIP12	NM_004238	human	genbank	54_36p	-1	provisional	missense	c.2454	p.D818E	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_WWE,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
TRIP12	9320	hgsc.bcm.edu	36	2	230432098	230432098	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	230432098	230432098	C	T	SNP	TRIP12	NM_004238	human	genbank	54_36p	-1	provisional	missense	c.535	p.A179T	1	NULL	"HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WWE,superfamily_ARM-type_fold"	-	no_errors
TUBA4A	7277	hgsc.bcm.edu	36	2	219824183	219824183	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	219824183	219824183	T	C	SNP	TUBA4A	NM_006000	human	genbank	54_36p	-1	reviewed	missense	c.482	p.Y161C	1	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin"	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
USP34	9736	hgsc.bcm.edu	36	2	61292479	61292479	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	61292479	61292479	G	C	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	missense	c.8772	p.F2924L	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP34	9736	hgsc.bcm.edu	36	2	61429042	61429042	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	61429042	61429042	C	A	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	silent	c.1752	p.G584	0.77	NULL	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
VIL1	7429	hgsc.bcm.edu	36	2	219005901	219005901	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	219005901	219005901	C	T	SNP	VIL1	NM_007127	human	genbank	54_36p	1	reviewed	missense	c.1483	p.R495C	0.55	"superfamily_SSF55753,HMMSmart_GEL"	"superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF82754,superfamily_VHP,HMMPfam_VHP,HMMSmart_VHP"	-	no_errors
VIT	5212	hgsc.bcm.edu	36	2	36864042	36864042	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	36864042	36864042	A	G	SNP	VIT	NM_053276	human	genbank	54_36p	1	provisional	silent	c.903	p.G301	1	NULL	"superfamily_LCCL,HMMSmart_LCCL,HMMPfam_LCCL,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	-	no_errors
WDR33	55339	hgsc.bcm.edu	36	2	128180449	128180450	+	Frame_Shift_Ins	INS	-	-	CACTTCT	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	128180449	128180450	-	CACTTCT	INS	WDR33	NM_018383	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.3929_3928	p.G1310fs	1.000:1.000	NULL	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMPfam_Collagen"	-	no_errors
WDR75	84128	hgsc.bcm.edu	36	2	190048275	190048275	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	190048275	190048275	G	C	SNP	WDR75	NM_032168	human	genbank	54_36p	1	provisional	missense	c.2380	p.D794H	0.57	NULL	"PatternScan_WD_REPEATS_1,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40"	-	no_errors
XIRP2	129446	hgsc.bcm.edu	36	2	167700789	167700789	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	167700789	167700789	C	A	SNP	XIRP2	NM_152381	human	genbank	54_36p	1	validated	missense	c.533	p.P178H	1	NULL	HMMPfam_Xin	-	no_errors
XIRP2	129446	hgsc.bcm.edu	36	2	167815906	167815906	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	167815906	167815906	G	A	SNP	XIRP2	NM_152381	human	genbank	54_36p	1	validated	missense	c.9758	p.R3253K	0.7	NULL	HMMPfam_Xin	-	no_errors
YSK4	80122	hgsc.bcm.edu	36	2	135460621	135460621	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	135460621	135460621	T	A	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	missense	c.2291	p.E764V	0.03	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ZDBF2	57683	hgsc.bcm.edu	36	2	206883093	206883093	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	206883093	206883093	A	-	DEL	ZDBF2	NM_020923	human	genbank	54_36p	1	validated	frame_shift_del	c.5596	p.V1868fs	0	NULL	HMMPfam_zf-DBF	"(deletion:cds_exon[206877686,206884562])"	no_errors
ZEB2	9839	hgsc.bcm.edu	36	2	144872480	144872480	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	144872480	144872480	G	T	SNP	ZEB2	NM_014795	human	genbank	54_36p	-1	validated	missense	c.2744	p.T915N	1	NULL	"PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX"	-	no_errors
ZEB2	9839	hgsc.bcm.edu	36	2	144872888	144872888	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	144872888	144872888	C	T	SNP	ZEB2	NM_014795	human	genbank	54_36p	-1	validated	missense	c.2336	p.R779K	1	NULL	"HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1,superfamily_SSF57667"	-	no_errors
ZNF804A	91752	hgsc.bcm.edu	36	2	185439358	185439358	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	185439358	185439358	A	T	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	missense	c.129	p.E43D	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF804A	91752	hgsc.bcm.edu	36	2	185510456	185510456	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	185510456	185510456	C	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	missense	c.2088	p.N696K	0	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ABCC5	10057	hgsc.bcm.edu	36	3	185121793	185121793	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	3	185121793	185121793	C	G	SNP	ABCC5	NM_005688	human	genbank	54_36p	-1	reviewed	missense	c.4303	p.V1435L	1	NULL	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABHD5	51099	hgsc.bcm.edu	36	3	43718856	43718856	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	43718856	43718856	G	A	SNP	ABHD5	NM_016006	human	genbank	54_36p	1	reviewed	silent	c.279	p.L93	0.99	superfamily_SSF53474	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	-	no_errors
ABHD6	57406	hgsc.bcm.edu	36	3	58246189	58246189	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	58246189	58246189	C	T	SNP	ABHD6	NM_020676	human	genbank	54_36p	1	validated	missense	c.806	p.P269L	0.95	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	-	no_errors
ACTL6A	86	hgsc.bcm.edu	36	3	180770642	180770642	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	180770642	180770642	C	T	SNP	ACTL6A	NM_004301	human	genbank	54_36p	1	reviewed	missense	c.196	p.P66S	1	"HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268"	"HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268,PatternScan_ASP_PROTEASE,PatternScan_ACTINS_2"	-	no_errors
ACTR8	93973	hgsc.bcm.edu	36	3	53879207	53879207	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	53879207	53879207	C	G	SNP	ACTR8	NM_022899	human	genbank	54_36p	-1	validated	missense	c.1573	p.D525H	1	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN"	-	no_errors
ACTR8	93973	hgsc.bcm.edu	36	3	53886374	53886374	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	53886374	53886374	A	T	SNP	ACTR8	NM_022899	human	genbank	54_36p	-1	validated	silent	c.591	p.P197	1	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	-	no_errors
ACY1	95	hgsc.bcm.edu	36	3	51995533	51995534	+	Frame_Shift_Ins	INS	-	-	TG	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	51995533	51995534	-	TG	INS	ACY1	NM_000666	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.499_500	p.R168fs	0.985:0.983	"superfamily_SSF53187,HMMPfam_Peptidase_M20"	"superfamily_SSF53187,PatternScan_ARGE_DAPE_CPG2_1,HMMPfam_Peptidase_M20,PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer"	-	no_errors
ADAMTS9	56999	hgsc.bcm.edu	36	3	64562774	64562774	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	64562774	64562774	G	A	SNP	ADAMTS9	NM_182920	human	genbank	54_36p	-1	reviewed	silent	c.3903	p.D1301	0.03	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
ADCY5	111	hgsc.bcm.edu	36	3	124488299	124488299	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	124488299	124488299	G	T	SNP	ADCY5	NM_183357	human	genbank	54_36p	-1	validated	missense	c.3580	p.P1194T	1	"HMMSmart_CYCc,HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1"	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
ALAS1	211	hgsc.bcm.edu	36	3	52220371	52220371	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	52220371	52220371	G	A	SNP	ALAS1	NM_000688	human	genbank	54_36p	1	validated	missense	c.1363	p.A455T	1	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2"	-	no_errors
ALDH1L1	10840	hgsc.bcm.edu	36	3	127354975	127354975	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	127354975	127354975	A	T	SNP	ALDH1L1	NM_012190	human	genbank	54_36p	-1	reviewed	splice_site	c.858+2	e6+2	1	-	-	-	no_errors
ANO10	55129	hgsc.bcm.edu	36	3	43449204	43449204	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	43449204	43449204	T	C	SNP	ANO10	NM_018075	human	genbank	54_36p	-1	validated	missense	c.1817	p.K606R	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
APEH	327	hgsc.bcm.edu	36	3	49687675	49687675	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	49687675	49687675	C	A	SNP	APEH	NM_001640	human	genbank	54_36p	1	reviewed	nonsense	c.201	p.Y67*	1	superfamily_Peptidase_S9A_N	"superfamily_Peptidase_S9A_N,superfamily_SSF53474,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER"	-	no_errors
ARIH2	10425	hgsc.bcm.edu	36	3	48987259	48987259	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	48987259	48987259	C	T	SNP	ARIH2	NM_006321	human	genbank	54_36p	1	provisional	silent	c.894	p.P298	1	"HMMSmart_SM00647,HMMPfam_IBR,superfamily_RING/U-box"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1"	-	no_errors
ARPP21	10777	hgsc.bcm.edu	36	3	35810268	35810268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	35810268	35810268	G	A	SNP	ARPP-21	NM_016300	human	genbank	54_36p	1	validated	silent	c.2253	p.Q751	1	NULL	"HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H"	-	no_errors
ASTE1	28990	hgsc.bcm.edu	36	3	132215737	132215737	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	132215737	132215737	T	-	DEL	ASTE1	NM_014065	human	genbank	54_36p	-1	validated	frame_shift_del	c.1894	p.R632fs	0.01	NULL	"HMMPfam_XPG_N,superfamily_SSF88723"	"(deletion:cds_exon[132215591,132215921])"	no_errors
ATG3	64422	hgsc.bcm.edu	36	3	113751742	113751742	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	113751742	113751742	C	G	SNP	ATG3	NM_022488	human	genbank	54_36p	-1	provisional	missense	c.222	p.L74F	1	HMMPfam_Autophagy_N	"HMMPfam_Autophagy_N,HMMPfam_Autophagy_act_C,HMMPfam_Autophagy_Cterm"	-	no_errors
ATG3	64422	hgsc.bcm.edu	36	3	113763031	113763031	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	113763031	113763031	G	A	SNP	ATG3	NM_022488	human	genbank	54_36p	-1	provisional	missense	c.35	p.A12V	0.99	HMMPfam_Autophagy_N	"HMMPfam_Autophagy_N,HMMPfam_Autophagy_act_C,HMMPfam_Autophagy_Cterm"	-	no_errors
ATP13A4	84239	hgsc.bcm.edu	36	3	194607799	194607799	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	194607799	194607799	G	T	SNP	ATP13A4	NM_032279	human	genbank	54_36p	-1	validated	silent	c.3375	p.A1125	0.96	NULL	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_HAD-like"	-	no_errors
ATP13A4	84239	hgsc.bcm.edu	36	3	194693626	194693626	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	194693626	194693626	C	A	SNP	ATP13A4	NM_032279	human	genbank	54_36p	-1	validated	silent	c.399	p.V133	1	NULL	"HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M"	-	no_errors
ATP13A5	344905	hgsc.bcm.edu	36	3	194525413	194525413	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	194525413	194525413	C	T	SNP	ATP13A5	NM_198505	human	genbank	54_36p	-1	provisional	silent	c.1608	p.L536	1	"superfamily_SSF81665,superfamily_SSF81660"	"superfamily_SSF81665,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,superfamily_SSF56784"	-	no_errors
ATP13A5	344905	hgsc.bcm.edu	36	3	194535424	194535424	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	194535424	194535424	C	T	SNP	ATP13A5	NM_198505	human	genbank	54_36p	-1	provisional	missense	c.1102	p.V368I	1	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665"	"HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665"	-	no_errors
ATP13A5	344905	hgsc.bcm.edu	36	3	194579201	194579201	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	194579201	194579201	T	C	SNP	ATP13A5	NM_198505	human	genbank	54_36p	-1	provisional	missense	c.8	p.E3G	0.03	NULL	"HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665"	-	no_errors
ATP2B2	491	hgsc.bcm.edu	36	3	10376757	10376757	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	10376757	10376757	C	G	SNP	ATP2B2	NM_001001331	human	genbank	54_36p	-1	reviewed	missense	c.1710	p.E570D	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	###############################################################################################################################################################################################################################################################	-	no_errors
BAP1	8314	hgsc.bcm.edu	36	3	52415413	52415413	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	52415413	52415413	G	A	SNP	BAP1	NM_004656	human	genbank	54_36p	-1	reviewed	missense	c.679	p.R227C	1	superfamily_Cysteine proteinases	"HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases"	-	no_errors
BBX	56987	hgsc.bcm.edu	36	3	108918169	108918169	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	108918169	108918169	T	C	SNP	BBX	NM_020235	human	genbank	54_36p	1	validated	missense	c.188	p.L63P	1	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box,HMMPfam_DUF2028"	-	no_errors
BOC	91653	hgsc.bcm.edu	36	3	114481502	114481502	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	114481502	114481502	C	A	SNP	BOC	NM_033254	human	genbank	54_36p	1	validated	missense	c.2162	p.T721K	0.98	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_N6_MTASE,PatternScan_CYTOCHROME_P450"	-	no_errors
BOC	91653	hgsc.bcm.edu	36	3	114484983	114484983	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	114484983	114484983	C	A	SNP	BOC	NM_033254	human	genbank	54_36p	1	validated	missense	c.2467	p.P823T	1	NULL	"PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_CYTOCHROME_P450,superfamily_Immunoglobulin"	-	no_errors
BOC	91653	hgsc.bcm.edu	36	3	114485036	114485036	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	114485036	114485036	G	A	SNP	BOC	NM_033254	human	genbank	54_36p	1	validated	silent	c.2520	p.P840	0	NULL	"PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_CYTOCHROME_P450,superfamily_Immunoglobulin"	-	no_errors
BRPF1	7862	hgsc.bcm.edu	36	3	9756506	9756506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	9756506	9756506	G	C	SNP	BRPF1	NM_001003694	human	genbank	54_36p	1	reviewed	missense	c.1423	p.G475R	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP"	-	no_errors
C3orf20	84077	hgsc.bcm.edu	36	3	14743469	14743469	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	14743469	14743469	G	T	SNP	C3orf20	NM_032137	human	genbank	54_36p	1	predicted	missense	c.1624	p.A542S	0	NULL	NULL	-	no_errors
C3orf23	285343	hgsc.bcm.edu	36	3	44384187	44384187	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	44384187	44384187	A	G	SNP	C3orf23	NM_173826	human	genbank	54_36p	1	validated	silent	c.555	p.R185	0.99	NULL	NULL	-	no_errors
C3orf30	152405	hgsc.bcm.edu	36	3	120349021	120349021	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	120349021	120349021	T	C	SNP	C3orf30	NM_152539	human	genbank	54_36p	1	predicted	missense	c.1295	p.F432S	0	NULL	NULL	-	no_errors
C3orf32	51066	hgsc.bcm.edu	36	3	8647591	8647591	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	8647591	8647591	C	A	SNP	C3orf32	NM_015931	human	genbank	54_36p	-1	predicted	missense	c.359	p.R120I	0.9	NULL	NULL	-	no_errors
C3orf59	151963	hgsc.bcm.edu	36	3	193999858	193999858	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	193999858	193999858	C	G	SNP	C3orf59	NM_178496	human	genbank	54_36p	-1	validated	missense	c.481	p.D161H	1	NULL	NULL	-	no_errors
CACNA1D	776	hgsc.bcm.edu	36	3	53785084	53785084	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	53785084	53785084	T	G	SNP	CACNA1D	NM_000720	human	genbank	54_36p	1	validated	missense	c.4394	p.I1465S	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA2D2	9254	hgsc.bcm.edu	36	3	50391996	50391996	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	50391996	50391996	G	-	DEL	CACNA2D2	NM_001005505	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1023	p.F342fs	1	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1,HMMPfam_VGCC_alpha2"	"(deletion:cds_exon[50391867,50392025])"	no_errors
CADPS	8618	hgsc.bcm.edu	36	3	62453050	62453050	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	62453050	62453050	T	G	SNP	CADPS	NM_003716	human	genbank	54_36p	-1	reviewed	missense	c.2839	p.S947R	1	NULL	"HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041"	-	no_errors
CAMK1	8536	hgsc.bcm.edu	36	3	9778325	9778325	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	9778325	9778325	C	T	SNP	CAMK1	NM_003656	human	genbank	54_36p	-1	reviewed	silent	c.546	p.P182	0.86	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CAMKV	79012	hgsc.bcm.edu	36	3	49874769	49874769	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	49874769	49874769	C	T	SNP	CAMKV	NM_024046	human	genbank	54_36p	-1	validated	silent	c.57	p.E19	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	-	no_errors
CASR	846	hgsc.bcm.edu	36	3	123486612	123486612	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	123486612	123486612	C	T	SNP	CASR	NM_000388	human	genbank	54_36p	1	reviewed	missense	c.3121	p.R1041W	0	NULL	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
CCDC39	339829	hgsc.bcm.edu	36	3	181848716	181848716	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	181848716	181848716	T	A	SNP	CCDC39	NM_181426	human	genbank	54_36p	-1	validated	missense	c.1293	p.K431N	0.4	NULL	superfamily_Prefoldin	-	no_errors
CCDC39	339829	hgsc.bcm.edu	36	3	181859971	181859971	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	181859971	181859971	A	G	SNP	CCDC39	NM_181426	human	genbank	54_36p	-1	validated	missense	c.701	p.M234T	1	NULL	superfamily_Prefoldin	-	no_errors
CCDC80	151887	hgsc.bcm.edu	36	3	113839678	113839678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	113839678	113839678	C	T	SNP	CCDC80	NM_199511	human	genbank	54_36p	-1	validated	missense	c.1765	p.G589S	0	NULL	NULL	-	no_errors
CCR9	10803	hgsc.bcm.edu	36	3	45918067	45918067	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	45918067	45918067	C	T	SNP	CCR9	NM_031200	human	genbank	54_36p	1	reviewed	silent	c.783	p.T261	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CCRL2	9034	hgsc.bcm.edu	36	3	46424640	46424640	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	46424640	46424640	C	T	SNP	CCRL2	NM_003965	human	genbank	54_36p	1	reviewed	silent	c.66	p.S22	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
CD200R1	131450	hgsc.bcm.edu	36	3	114130471	114130471	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	114130471	114130471	G	A	SNP	CD200R1	NM_138806	human	genbank	54_36p	-1	reviewed	silent	c.651	p.S217	0.02	"superfamily_Immunoglobulin,HMMPfam_C2-set_2"	"superfamily_Immunoglobulin,HMMPfam_C2-set_2"	-	no_errors
CELSR3	1951	hgsc.bcm.edu	36	3	48655322	48655322	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	48655322	48655322	C	T	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	splice_site	c.8407-1	e30-1	1	-	-	-	no_errors
CELSR3	1951	hgsc.bcm.edu	36	3	48659350	48659350	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	48659350	48659350	C	T	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.7145	p.S2382N	0.01	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CHMP2B	25978	hgsc.bcm.edu	36	3	87377619	87377619	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	87377619	87377619	A	G	SNP	CHMP2B	NM_014043	human	genbank	54_36p	1	reviewed	silent	c.192	p.Q64	1	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors
CIDEC	63924	hgsc.bcm.edu	36	3	9886605	9886605	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	9886605	9886605	G	C	SNP	CIDEC	NM_022094	human	genbank	54_36p	-1	provisional	missense	c.515	p.S172C	1	NULL	"superfamily_CAD  PB1 domains,HMMPfam_CIDE-N,HMMSmart_SM00266,PatternScan_SERPIN"	-	no_errors
CLCN2	1181	hgsc.bcm.edu	36	3	185553623	185553623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	185553623	185553623	T	A	SNP	CLCN2	NM_004366	human	genbank	54_36p	-1	validated	missense	c.2035	p.T679S	1	HMMPfam_CBS	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS"	-	no_errors
CLDN11	5010	hgsc.bcm.edu	36	3	171619588	171619588	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	171619588	171619588	A	T	SNP	CLDN11	NM_005602	human	genbank	54_36p	1	reviewed	missense	c.40	p.S14C	0.97	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
CLDN18	51208	hgsc.bcm.edu	36	3	139200500	139200500	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	139200500	139200500	G	A	SNP	CLDN18	NM_001002026	human	genbank	54_36p	1	validated	missense	c.100	p.D34N	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
CNTN6	27255	hgsc.bcm.edu	36	3	1399790	1399790	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	1399790	1399790	A	T	SNP	CNTN6	NM_014461	human	genbank	54_36p	1	reviewed	missense	c.2331	p.K777N	1	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
COL6A6	131873	hgsc.bcm.edu	36	3	131823372	131823380	+	In_Frame_Del	DEL	AGGAGAGGC	AGGAGAGGC	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	AGGAGAGGC	AGGAGAGGC	AGGAGAGGC	-	AGGAGAGGC	AGGAGAGGC	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	131823372	131823380	AGGAGAGGC	-	DEL	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	in_frame_del	c.4833_4841	p.EAG1613in_frame_del	0.376:0.507:0.508:0.395:0.132:0.026:0.000:0.000:0.000	HMMPfam_Collagen	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen"	"(deletion:cds_exon[131823355,131823417])"	no_errors
COL7A1	1294	hgsc.bcm.edu	36	3	48577600	48577601	+	Frame_Shift_Ins	INS	-	-	GG	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	48577600	48577601	-	GG	INS	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.8566_8565	p.S2855fs	0.049:0.106	NULL	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	-	no_errors
COL7A1	1294	hgsc.bcm.edu	36	3	48580956	48580956	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	48580956	48580956	C	T	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	missense	c.7774	p.A2592T	0.11	HMMPfam_Collagen	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
CPN2	1370	hgsc.bcm.edu	36	3	195544981	195544981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	195544981	195544981	G	A	SNP	CPN2	NM_001080513	human	genbank	54_36p	-1	validated	missense	c.146	p.P49L	0.05	"HMMSmart_LRRNT,superfamily_SSF52047"	"HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52047,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT"	-	no_errors
CSRNP1	64651	hgsc.bcm.edu	36	3	39161586	39161586	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	39161586	39161586	G	T	SNP	AXUD1	NM_033027	human	genbank	54_36p	-1	reviewed	missense	c.371	p.S124Y	1	NULL	NULL	-	no_errors
CTNNB1	1499	hgsc.bcm.edu	36	3	41250773	41250773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	41250773	41250773	G	C	SNP	CTNNB1	NM_001098209	human	genbank	54_36p	1	validated	missense	c.1664	p.G555A	1	"superfamily_ARM repeat,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm"	-	no_errors
CYP8B1	1582	hgsc.bcm.edu	36	3	42891319	42891319	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	42891319	42891319	C	T	SNP	CYP8B1	NM_004391	human	genbank	54_36p	-1	reviewed	missense	c.994	p.G332S	0.3	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450"	-	no_errors
DAG1	1605	hgsc.bcm.edu	36	3	49543630	49543630	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	49543630	49543630	G	T	SNP	DAG1	NM_004393	human	genbank	54_36p	1	reviewed	missense	c.682	p.V228L	1	"HMMPfam_DAG1,superfamily_SSF111006"	"HMMPfam_DAG1,superfamily_Cadherin,HMMSmart_CADG,superfamily_SSF111006"	-	no_errors
DAG1	1605	hgsc.bcm.edu	36	3	49544914	49544914	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	49544914	49544914	G	A	SNP	DAG1	NM_004393	human	genbank	54_36p	1	reviewed	missense	c.1966	p.V656M	0.69	HMMPfam_DAG1	"HMMSmart_CADG,HMMPfam_DAG1,superfamily_Cadherin,superfamily_SSF111006"	-	no_errors
DHX30	22907	hgsc.bcm.edu	36	3	47863232	47863232	+	Missense_Mutation	SNP	G	G	A	rs36045705	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	47863232	47863232	G	A	SNP	DHX30	NM_138615	human	genbank	54_36p	1	reviewed	missense	c.1666	p.V556I	1	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE"	"superfamily_dsRNA-binding domain-like,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
DLEC1	9940	hgsc.bcm.edu	36	3	38114134	38114134	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	38114134	38114134	T	A	SNP	DLEC1	NM_007337	human	genbank	54_36p	1	reviewed	splice_site	c.2565+2	e17+2	1	-	-	-	no_errors
DLEC1	9940	hgsc.bcm.edu	36	3	38133126	38133126	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	38133126	38133126	G	A	SNP	DLEC1	NM_007337	human	genbank	54_36p	1	reviewed	silent	c.4035	p.S1345	0	NULL	NULL	-	no_errors
DLG1	1739	hgsc.bcm.edu	36	3	198347889	198347889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	198347889	198347889	C	T	SNP	DLG1	NM_004087	human	genbank	54_36p	-1	validated	missense	c.1040	p.S347N	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	###############################################################################################################################################################################################################################################################	-	no_errors
DNAH1	25981	hgsc.bcm.edu	36	3	52379212	52379214	+	In_Frame_Del	DEL	CAA	CAA	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	CAA	CAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	52379212	52379214	CAA	-	DEL	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	in_frame_del	c.6185_6187	p.T2063in_frame_del	0.994:0.692:0.933	NULL	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	"(deletion:cds_exon[52379166,52379285])"	no_errors
DPPA2	151871	hgsc.bcm.edu	36	3	110516051	110516051	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	110516051	110516051	T	C	SNP	DPPA2	NM_138815	human	genbank	54_36p	-1	provisional	missense	c.29	p.K10R	0.18	NULL	HMMSmart_SAP	-	no_errors
DYNC1LI1	51143	hgsc.bcm.edu	36	3	32545051	32545051	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	32545051	32545051	C	G	SNP	DYNC1LI1	NM_016141	human	genbank	54_36p	-1	validated	missense	c.1353	p.L451F	1	HMMPfam_DLIC	"HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DZIP3	9666	hgsc.bcm.edu	36	3	109846258	109846258	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	109846258	109846258	G	C	SNP	DZIP3	NM_014648	human	genbank	54_36p	1	validated	missense	c.1699	p.V567L	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
ECT2	1894	hgsc.bcm.edu	36	3	173955783	173955783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	173955783	173955783	G	C	SNP	ECT2	NM_018098	human	genbank	54_36p	1	reviewed	missense	c.135	p.E45D	1	NULL	"superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like"	-	no_errors
EHHADH	1962	hgsc.bcm.edu	36	3	186404907	186404907	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	186404907	186404907	C	G	SNP	EHHADH	NM_001966	human	genbank	54_36p	-1	validated	missense	c.901	p.G301R	1	"superfamily_NAD(P)-bd,HMMPfam_3HCDH_N"	"superfamily_SSF52096,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE,superfamily_NAD(P)-bd,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6DGDH_C_like,HMMPfam_3HCDH"	-	no_errors
EIF4A2	1974	hgsc.bcm.edu	36	3	187984101	187984101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	187984101	187984101	G	T	SNP	EIF4A2	NM_001967	human	genbank	54_36p	1	validated	missense	c.8	p.G3V	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
EIF4A2	1974	hgsc.bcm.edu	36	3	187988016	187988016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	187988016	187988016	G	C	SNP	EIF4A2	NM_001967	human	genbank	54_36p	1	validated	missense	c.948	p.M316I	1	"HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
EPHA3	2042	hgsc.bcm.edu	36	3	89342107	89342107	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	89342107	89342107	T	G	SNP	EPHA3	NM_005233	human	genbank	54_36p	1	reviewed	silent	c.561	p.G187	1	"HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Galactose-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA3	2042	hgsc.bcm.edu	36	3	89582131	89582131	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	89582131	89582131	T	G	SNP	EPHA3	NM_005233	human	genbank	54_36p	1	reviewed	missense	c.2611	p.F871V	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA6	285220	hgsc.bcm.edu	36	3	98188958	98188958	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	98188958	98188958	G	C	SNP	EPHA6	NM_001080448	human	genbank	54_36p	1	provisional	missense	c.545	p.R182P	1	"superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB3	2049	hgsc.bcm.edu	36	3	185773410	185773410	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	185773410	185773410	T	-	DEL	EPHB3	NM_004443	human	genbank	54_36p	1	reviewed	frame_shift_del	c.608	p.I203fs	1	"superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[185772986,185773658])"	no_errors
EPHB3	2049	hgsc.bcm.edu	36	3	185778418	185778418	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	185778418	185778418	A	C	SNP	EPHB3	NM_004443	human	genbank	54_36p	1	reviewed	missense	c.1678	p.I560L	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MECOM	2122	hgsc.bcm.edu	36	3	170302618	170302618	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	170302618	170302618	T	C	SNP	EVI1	NM_001105077	human	genbank	54_36p	-1	validated	missense	c.2323	p.M775V	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FGF12	2257	hgsc.bcm.edu	36	3	193560948	193560948	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	193560948	193560948	A	T	SNP	FGF12	NM_021032	human	genbank	54_36p	-1	reviewed	silent	c.273	p.G91	0.96	"superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF"	"superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
FLNB	2317	hgsc.bcm.edu	36	3	58083926	58083926	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	58083926	58083926	A	C	SNP	FLNB	NM_001457	human	genbank	54_36p	1	validated	missense	c.3193	p.T1065P	1	"HMMPfam_Filamin,superfamily_Ig_E-set,HMMSmart_IG_FLMN"	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN"	-	no_errors
FNDC3B	64778	hgsc.bcm.edu	36	3	173448059	173448059	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	173448059	173448059	C	T	SNP	FNDC3B	NM_022763	human	genbank	54_36p	1	validated	missense	c.307	p.P103S	1	NULL	"superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
FRMD4B	23150	hgsc.bcm.edu	36	3	69326925	69326925	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	69326925	69326925	G	T	SNP	FRMD4B	NM_015123	human	genbank	54_36p	-1	validated	missense	c.1426	p.Q476K	1	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C"	-	no_errors
FRMD4B	23150	hgsc.bcm.edu	36	3	69350185	69350185	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	69350185	69350185	C	A	SNP	FRMD4B	NM_015123	human	genbank	54_36p	-1	validated	missense	c.767	p.G256V	1	"PatternScan_FERM_2,HMMPfam_FERM_M,HMMSmart_SM00295,superfamily_PH domain-like"	"HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like"	-	no_errors
GHRL	51738	hgsc.bcm.edu	36	3	10303459	10303459	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	10303459	10303459	C	A	SNP	GHRL	NM_016362	human	genbank	54_36p	-1	reviewed	missense	c.263	p.G88V	0.99	HMMPfam_Motilin_assoc	"HMMPfam_Motilin_ghrelin,HMMPfam_Motilin_assoc"	-	no_errors
GHSR	2693	hgsc.bcm.edu	36	3	173648269	173648269	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	173648269	173648269	A	T	SNP	GHSR	NM_198407	human	genbank	54_36p	-1	reviewed	missense	c.629	p.L210H	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GLB1	2720	hgsc.bcm.edu	36	3	33074624	33074625	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	33074624	33074625	CC	-	DEL	GLB1	NM_000404	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.694_693	p.A232fs	0.429:0.540	"HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F35"	"(deletion:cds_exon[33074585,33074765])"	no_errors
GNAT1	2779	hgsc.bcm.edu	36	3	50207281	50207281	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	3	50207281	50207281	G	C	SNP	GNAT1	NM_000172	human	genbank	54_36p	1	reviewed	missense	c.942	p.E314D	1	"superfamily_SSF52540,HMMPfam_G-alpha"	"superfamily_SSF52540,HMMPfam_G-alpha,superfamily_Transducn_insert"	-	no_errors
GOLGA4	2803	hgsc.bcm.edu	36	3	37298467	37298467	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	37298467	37298467	G	T	SNP	GOLGA4	NM_002078	human	genbank	54_36p	1	reviewed	missense	c.177	p.Q59H	1	NULL	"superfamily_Prefoldin,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_GRIP,HMMSmart_SM00755,superfamily_GRIP domain"	-	no_errors
GOLGA4	2803	hgsc.bcm.edu	36	3	37340332	37340332	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	37340332	37340332	C	G	SNP	GOLGA4	NM_002078	human	genbank	54_36p	1	reviewed	missense	c.1951	p.Q651E	0.46	NULL	"HMMPfam_GRIP,HMMSmart_SM00755,PatternScan_PHOSPHOPANTETHEINE,superfamily_Prefoldin,superfamily_GRIP domain"	-	no_errors
GOLGB1	2804	hgsc.bcm.edu	36	3	122898330	122898330	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	122898330	122898330	G	C	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.3715	p.Q1239E	0.12	NULL	"superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340"	-	no_errors
GOLIM4	27333	hgsc.bcm.edu	36	3	169233012	169233012	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	169233012	169233012	G	T	SNP	GOLIM4	NM_014498	human	genbank	54_36p	-1	reviewed	missense	c.1166	p.A389E	0	NULL	NULL	-	no_errors
GORASP1	64689	hgsc.bcm.edu	36	3	39114975	39114975	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	39114975	39114975	G	C	SNP	GORASP1	NM_031899	human	genbank	54_36p	-1	reviewed	missense	c.1079	p.T360R	1	HMMPfam_GRASP55_65	"superfamily_PDZ domain-like,HMMPfam_GRASP55_65"	-	no_errors
HEG1	57493	hgsc.bcm.edu	36	3	126230766	126230766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	126230766	126230766	C	T	SNP	HEG1	NM_020733	human	genbank	54_36p	-1	validated	silent	c.573	p.E191	0	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
HPS3	84343	hgsc.bcm.edu	36	3	150351082	150351082	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	150351082	150351082	C	T	SNP	HPS3	NM_032383	human	genbank	54_36p	1	reviewed	silent	c.1170	p.N390	1	NULL	NULL	-	no_errors
HPS3	84343	hgsc.bcm.edu	36	3	150368429	150368429	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	150368429	150368429	G	A	SNP	HPS3	NM_032383	human	genbank	54_36p	1	reviewed	silent	c.2856	p.E952	0.05	NULL	NULL	-	no_errors
HRG	3273	hgsc.bcm.edu	36	3	187872125	187872125	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	187872125	187872125	T	G	SNP	HRG	NM_000412	human	genbank	54_36p	1	reviewed	missense	c.411	p.N137K	0.45	HMMSmart_SM00043	"HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin"	-	no_errors
HRH1	3269	hgsc.bcm.edu	36	3	11275790	11275790	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	11275790	11275790	G	T	SNP	HRH1	NM_000861	human	genbank	54_36p	1	reviewed	missense	c.67	p.A23S	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HYAL3	8372	hgsc.bcm.edu	36	3	50307888	50307888	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	50307888	50307888	C	G	SNP	HYAL3	NM_003549	human	genbank	54_36p	-1	reviewed	silent	c.150	p.L50	0.99	"HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases,PatternScan_EGF_1,PatternScan_EGF_2"	-	no_errors
IFRD2	7866	hgsc.bcm.edu	36	3	50302845	50302845	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	50302845	50302845	C	G	SNP	IFRD2	NM_006764	human	genbank	54_36p	-1	validated	missense	c.241	p.V81L	1	"HMMPfam_IFRD,superfamily_ARM-type_fold"	"HMMPfam_IFRD,superfamily_ARM-type_fold,HMMPfam_IFRD_C"	-	no_errors
IGSF10	285313	hgsc.bcm.edu	36	3	152638411	152638411	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	152638411	152638411	C	T	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	missense	c.6628	p.E2210K	0.98	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_I-set,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_ig"	-	no_errors
IGSF10	285313	hgsc.bcm.edu	36	3	152646065	152646065	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	152646065	152646065	A	T	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	missense	c.4394	p.F1465Y	0.18	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
IL17RC	84818	hgsc.bcm.edu	36	3	9937623	9937623	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	9937623	9937623	G	A	SNP	IL17RC	NM_153461	human	genbank	54_36p	1	reviewed	missense	c.805	p.E269K	0.64	NULL	HMMPfam_SEFIR	-	no_errors
IL17RC	84818	hgsc.bcm.edu	36	3	9949300	9949300	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	9949300	9949300	A	G	SNP	IL17RC	NM_153461	human	genbank	54_36p	1	reviewed	missense	c.1609	p.K537E	0.98	NULL	HMMPfam_SEFIR	-	no_errors
IL17RD	54756	hgsc.bcm.edu	36	3	57110354	57110354	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	57110354	57110354	G	-	DEL	IL17RD	NM_017563	human	genbank	54_36p	-1	validated	frame_shift_del	c.961	p.R321fs	1	NULL	HMMPfam_SEFIR	"(deletion:cds_exon[57110247,57110431])"	no_errors
IL20RB	53833	hgsc.bcm.edu	36	3	138191004	138191004	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	138191004	138191004	C	T	SNP	IL20RB	NM_144717	human	genbank	54_36p	1	validated	silent	c.438	p.T146	0.04	superfamily_Fibronectin type III	"HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
IMPG2	50939	hgsc.bcm.edu	36	3	102447416	102447416	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	102447416	102447416	G	C	SNP	IMPG2	NM_016247	human	genbank	54_36p	-1	validated	missense	c.1463	p.S488C	1	NULL	"superfamily_SEA domain,HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_2,superfamily_EGF/Laminin"	-	no_errors
IMPG2	50939	hgsc.bcm.edu	36	3	102521134	102521134	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	102521134	102521134	C	G	SNP	IMPG2	NM_016247	human	genbank	54_36p	-1	validated	missense	c.318	p.K106N	1	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_2,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
IQCF1	132141	hgsc.bcm.edu	36	3	51904143	51904143	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	51904143	51904143	G	A	SNP	IQCF1	NM_152397	human	genbank	54_36p	-1	provisional	missense	c.421	p.R141C	0.01	"HMMSmart_SM00015,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00015,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
IRAK2	3656	hgsc.bcm.edu	36	3	10258843	10258843	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	10258843	10258843	G	A	SNP	IRAK2	NM_001570	human	genbank	54_36p	1	reviewed	silent	c.1809	p.R603	1	NULL	"PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_DEATH_like,HMMPfam_Death,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
ITIH4	3700	hgsc.bcm.edu	36	3	52823078	52823078	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	52823078	52823078	G	A	SNP	ITIH4	NM_002218	human	genbank	54_36p	-1	validated	silent	c.2676	p.D892	0	HMMPfam_ITI_HC_C	"HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
ITIH4	3700	hgsc.bcm.edu	36	3	52827536	52827536	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	52827536	52827536	T	C	SNP	ITIH4	NM_002218	human	genbank	54_36p	-1	validated	missense	c.2134	p.M712V	0	NULL	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like"	-	no_errors
ITPR1	3708	hgsc.bcm.edu	36	3	4817273	4817273	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	4817273	4817273	G	A	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	missense	c.6952	p.G2318S	1	NULL	"HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans"	-	no_errors
ITPR1	3708	hgsc.bcm.edu	36	3	4828092	4828092	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	4828092	4828092	G	C	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	missense	c.7272	p.K2424N	1	HMMPfam_Ion_trans	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2"	-	no_errors
JAGN1	84522	hgsc.bcm.edu	36	3	9909740	9909740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	9909740	9909740	G	A	SNP	JAGN1	NM_032492	human	genbank	54_36p	1	validated	silent	c.231	p.P77	0.96	HMMPfam_DUF1352	HMMPfam_DUF1352	-	no_errors
KALRN	8997	hgsc.bcm.edu	36	3	125692410	125692410	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	125692410	125692410	A	G	SNP	KALRN	NM_001024660	human	genbank	54_36p	1	reviewed	missense	c.4570	p.N1524D	1	"superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH"	###############################################################################################################################################################################################################################################################	-	no_errors
KAT2B	8850	hgsc.bcm.edu	36	3	20111785	20111785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	20111785	20111785	G	A	SNP	KAT2B	NM_003884	human	genbank	54_36p	1	reviewed	missense	c.457	p.V153M	1	HMMPfam_PCAF_N	"HMMPfam_PCAF_N,superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
KCNAB1	7881	hgsc.bcm.edu	36	3	157716844	157716844	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	157716844	157716844	G	A	SNP	KCNAB1	NM_172160	human	genbank	54_36p	1	reviewed	silent	c.957	p.L319	1	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	-	no_errors
KCNH8	131096	hgsc.bcm.edu	36	3	19529731	19529732	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	19529731	19529732	-	C	INS	KCNH8	NM_144633	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.2345_2346	p.N785fs	0.105:0.007	NULL	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding"	-	no_errors
KIAA0226	9711	hgsc.bcm.edu	36	3	198893168	198893168	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	198893168	198893168	C	T	SNP	KIAA0226	NM_014687	human	genbank	54_36p	-1	predicted	splice_site	c.2127-1	e15-1	1	-	-	-	no_errors
KIAA2018	205717	hgsc.bcm.edu	36	3	114860172	114860172	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	114860172	114860172	T	-	DEL	KIAA2018	NM_001009899	human	genbank	54_36p	-1	validated	frame_shift_del	c.3047	p.N1016fs	0.39	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	"(deletion:cds_exon[114856481,114862962])"	no_errors
KIAA2018	205717	hgsc.bcm.edu	36	3	114860516	114860516	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	114860516	114860516	A	G	SNP	KIAA2018	NM_001009899	human	genbank	54_36p	-1	validated	silent	c.2703	p.H901	0.98	NULL	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	-	no_errors
KLF15	28999	hgsc.bcm.edu	36	3	127554211	127554211	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	127554211	127554211	G	C	SNP	KLF15	NM_014079	human	genbank	54_36p	-1	validated	missense	c.245	p.S82C	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LAMB2	3913	hgsc.bcm.edu	36	3	49144735	49144735	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	49144735	49144735	C	A	SNP	LAMB2	NM_002292	human	genbank	54_36p	-1	reviewed	silent	c.357	p.R119	0.09	"HMMSmart_LamNT,HMMPfam_Laminin_N"	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
LEPREL1	55214	hgsc.bcm.edu	36	3	191320738	191320738	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	191320738	191320738	G	C	SNP	LEPREL1	NM_018192	human	genbank	54_36p	-1	validated	missense	c.477	p.I159M	0.9	superfamily_TPR-like	"superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy,PatternScan_ER_TARGET"	-	no_errors
LHFPL4	375323	hgsc.bcm.edu	36	3	9518917	9518917	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	9518917	9518917	A	T	SNP	LHFPL4	NM_198560	human	genbank	54_36p	-1	reviewed	missense	c.722	p.V241E	0.96	NULL	HMMPfam_L_HGMIC_fpl	-	no_errors
LHFPL4	375323	hgsc.bcm.edu	36	3	9522725	9522725	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	9522725	9522725	A	T	SNP	LHFPL4	NM_198560	human	genbank	54_36p	-1	reviewed	missense	c.569	p.L190H	1	HMMPfam_L_HGMIC_fpl	HMMPfam_L_HGMIC_fpl	-	no_errors
LIMD1	8994	hgsc.bcm.edu	36	3	45611883	45611883	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	45611883	45611883	G	T	SNP	LIMD1	NM_014240	human	genbank	54_36p	1	validated	missense	c.508	p.D170Y	0.24	NULL	"HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
LRRC15	131578	hgsc.bcm.edu	36	3	195561407	195561407	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	195561407	195561407	G	C	SNP	LRRC15	NM_130830	human	genbank	54_36p	-1	validated	missense	c.1661	p.S554C	0.97	NULL	"superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT"	-	no_errors
LRRC15	131578	hgsc.bcm.edu	36	3	195562155	195562155	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	195562155	195562155	T	C	SNP	LRRC15	NM_130830	human	genbank	54_36p	-1	validated	missense	c.913	p.I305V	0.99	"HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
MAGI1	9223	hgsc.bcm.edu	36	3	65317620	65317620	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	65317620	65317620	T	C	SNP	MAGI1	NM_001033057	human	genbank	54_36p	-1	reviewed	missense	c.3862	p.K1288E	0.15	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MAP4	4134	hgsc.bcm.edu	36	3	48015308	48015308	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	48015308	48015308	T	A	SNP	MAP4	NM_002375	human	genbank	54_36p	-1	reviewed	missense	c.47	p.D16V	1	NULL	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP"	-	no_errors
MBD4	8930	hgsc.bcm.edu	36	3	130634717	130634717	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	130634717	130634717	C	G	SNP	MBD4	NM_003925	human	genbank	54_36p	-1	reviewed	missense	c.1475	p.R492T	0.94	"superfamily_DNA-glycosylase,HMMPfam_HhH-GPD"	"superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-glycosylase,HMMPfam_HhH-GPD"	-	no_errors
MCCC1	56922	hgsc.bcm.edu	36	3	184237749	184237749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	184237749	184237749	G	A	SNP	MCCC1	NM_020166	human	genbank	54_36p	-1	reviewed	silent	c.1545	p.L515	1	NULL	"HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN"	-	no_errors
MCM2	4171	hgsc.bcm.edu	36	3	128806515	128806515	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	128806515	128806515	A	G	SNP	MCM2	NM_004526	human	genbank	54_36p	1	reviewed	missense	c.499	p.M167V	1	NULL	"superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,PatternScan_MCM_1"	-	no_errors
MCM2	4171	hgsc.bcm.edu	36	3	128822333	128822333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	128822333	128822333	G	A	SNP	MCM2	NM_004526	human	genbank	54_36p	1	reviewed	missense	c.2368	p.D790N	1	"HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540"	"HMMPfam_MCM,HMMSmart_MCM,superfamily_Nucleic_acid_OB,PatternScan_MCM_1,superfamily_SSF52540"	-	no_errors
MFN1	55669	hgsc.bcm.edu	36	3	180564867	180564867	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	180564867	180564867	G	A	SNP	MFN1	NM_033540	human	genbank	54_36p	1	reviewed	missense	c.625	p.E209K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin"	-	no_errors
MORC1	27136	hgsc.bcm.edu	36	3	110206787	110206787	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	110206787	110206787	G	A	SNP	MORC1	NM_014429	human	genbank	54_36p	-1	reviewed	silent	c.1833	p.S611	0.03	NULL	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMPfam_zf-CW"	-	no_errors
MRPS22	56945	hgsc.bcm.edu	36	3	140552585	140552585	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	140552585	140552585	A	G	SNP	MRPS22	NM_020191	human	genbank	54_36p	1	reviewed	missense	c.725	p.Y242C	1	HMMPfam_MRP-S22	HMMPfam_MRP-S22	-	no_errors
MST1R	4486	hgsc.bcm.edu	36	3	49909996	49909996	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	49909996	49909996	C	A	SNP	MST1R	NM_002447	human	genbank	54_36p	-1	validated	silent	c.2007	p.R669	0	"HMMSmart_SM00429,HMMPfam_TIG"	###############################################################################################################################################################################################################################################################	-	no_errors
MYH15	22989	hgsc.bcm.edu	36	3	109606965	109606965	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	109606965	109606965	T	A	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	missense	c.4706	p.K1569M	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat"	-	no_errors
MYLK	4638	hgsc.bcm.edu	36	3	124995347	124995347	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	124995347	124995347	T	C	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	missense	c.32	p.H11R	0.01	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NKTR	4820	hgsc.bcm.edu	36	3	42655651	42655651	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	42655651	42655651	G	A	SNP	NKTR	NM_005385	human	genbank	54_36p	1	reviewed	missense	c.3451	p.A1151T	0	NULL	"superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
NMD3	51068	hgsc.bcm.edu	36	3	162435608	162435608	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	162435608	162435608	T	A	SNP	NMD3	NM_015938	human	genbank	54_36p	1	provisional	nonsense	c.491	p.L164*	0.98	HMMPfam_NMD3	HMMPfam_NMD3	-	no_errors
NR1I2	8856	hgsc.bcm.edu	36	3	121014352	121014352	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	121014352	121014352	G	T	SNP	NR1I2	NM_022002	human	genbank	54_36p	1	reviewed	missense	c.766	p.G256W	0.99	superfamily_Str_ncl_receptor	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
NUP210	23225	hgsc.bcm.edu	36	3	13334231	13334231	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	13334231	13334231	T	A	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	nonsense	c.5614	p.K1872*	0.75	NULL	"superfamily_Invasin/intimin cell-adhesion fragments,HMMPfam_Big_2,HMMSmart_SM00635"	-	no_errors
NUP210	23225	hgsc.bcm.edu	36	3	13339842	13339842	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	13339842	13339842	C	A	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	missense	c.4735	p.V1579F	0.01	NULL	"HMMPfam_Big_2,HMMSmart_SM00635,superfamily_Invasin/intimin cell-adhesion fragments"	-	no_errors
OSBPL11	114885	hgsc.bcm.edu	36	3	126753982	126753982	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	126753982	126753982	T	C	SNP	OSBPL11	NM_022776	human	genbank	54_36p	-1	reviewed	missense	c.1387	p.M463V	1	HMMPfam_Oxysterol_BP	"superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
OXSR1	9943	hgsc.bcm.edu	36	3	38240307	38240307	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	38240307	38240307	G	T	SNP	OXSR1	NM_005109	human	genbank	54_36p	1	reviewed	missense	c.601	p.V201F	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
PARP3	10039	hgsc.bcm.edu	36	3	51956865	51956865	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	51956865	51956865	A	T	SNP	PARP3	NM_001003931	human	genbank	54_36p	1	reviewed	missense	c.1367	p.E456V	1	"superfamily_SSF56399,HMMPfam_PARP"	"HMMPfam_WGR,HMMSmart_WGR,superfamily_PARP_reg,HMMPfam_PARP_reg,superfamily_SSF56399,HMMPfam_PARP"	-	no_errors
PBRM1	55193	hgsc.bcm.edu	36	3	52660820	52660820	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	52660820	52660820	T	C	SNP	PBRM1	NM_018165	human	genbank	54_36p	-1	validated	missense	c.692	p.K231R	1	"superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	"superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,HMMPfam_BAH,HMMSmart_BAH,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
PBRM1	55193	hgsc.bcm.edu	36	3	52667321	52667321	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	52667321	52667321	T	G	SNP	PBRM1	NM_018165	human	genbank	54_36p	-1	validated	silent	c.579	p.I193	0.99	"HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain"	"HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_BAH,HMMSmart_BAH,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,superfamily_HMG-box,PatternScan_BROMODOMAIN_1"	-	no_errors
PCCB	5096	hgsc.bcm.edu	36	3	137531521	137531535	+	In_Frame_Del	DEL	AACGTCCTTGGAGAA	AACGTCCTTGGAGAA	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	AACGTCCTTGGAGAA	AACGTCCTTGGAGAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	137531521	137531535	AACGTCCTTGGAGAA	-	DEL	PCCB	NM_000532	human	genbank	54_36p	1	reviewed	in_frame_del	c.1583_1597	p.RPWRK529in_frame_del	0.981:0.967:0.982:0.990:0.989:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_SSF52096,HMMPfam_Carboxyl_trans"	"superfamily_SSF52096,HMMPfam_Carboxyl_trans"	"(deletion:cds_exon[137531437,137531558])"	no_errors
PDCD6IP	10015	hgsc.bcm.edu	36	3	33852627	33852627	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	33852627	33852627	C	G	SNP	PDCD6IP	NM_013374	human	genbank	54_36p	1	reviewed	missense	c.922	p.L308V	1	HMMPfam_BRO1	HMMPfam_BRO1	-	no_errors
PDE12	201626	hgsc.bcm.edu	36	3	57517547	57517547	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	57517547	57517547	A	T	SNP	PDE12	NM_177966	human	genbank	54_36p	1	validated	missense	c.401	p.E134V	1	NULL	"HMMPfam_Exo_endo_phos,superfamily_DNase I-like"	-	no_errors
PDE12	201626	hgsc.bcm.edu	36	3	57517956	57517956	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	57517956	57517956	A	C	SNP	PDE12	NM_177966	human	genbank	54_36p	1	validated	silent	c.810	p.V270	1	NULL	"HMMPfam_Exo_endo_phos,superfamily_DNase I-like"	-	no_errors
PDE12	201626	hgsc.bcm.edu	36	3	57517972	57517972	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	57517972	57517972	A	T	SNP	PDE12	NM_177966	human	genbank	54_36p	1	validated	missense	c.826	p.T276S	0.99	NULL	"HMMPfam_Exo_endo_phos,superfamily_DNase I-like"	-	no_errors
PEX5L	51555	hgsc.bcm.edu	36	3	181074906	181074906	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	181074906	181074906	C	G	SNP	PEX5L	NM_016559	human	genbank	54_36p	-1	provisional	splice_site	c.630-1	e7-1	1	-	-	-	no_errors
PIGZ	80235	hgsc.bcm.edu	36	3	198159623	198159623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	198159623	198159623	T	A	SNP	PIGZ	NM_025163	human	genbank	54_36p	-1	reviewed	missense	c.542	p.E181V	1	HMMPfam_Glyco_transf_22	HMMPfam_Glyco_transf_22	-	no_errors
PIK3R4	30849	hgsc.bcm.edu	36	3	131905315	131905315	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	131905315	131905315	C	A	SNP	PIK3R4	NM_014602	human	genbank	54_36p	-1	validated	missense	c.3040	p.D1014Y	1	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM-type_fold,HMMPfam_HEAT,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
PIK3R4	30849	hgsc.bcm.edu	36	3	131908665	131908665	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	131908665	131908665	T	C	SNP	PIK3R4	NM_014602	human	genbank	54_36p	-1	validated	silent	c.2538	p.R846	0.99	superfamily_WD40_like	"HMMPfam_HEAT,HMMPfam_Pkinase_Tyr,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
PIK3R4	30849	hgsc.bcm.edu	36	3	131946116	131946116	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	131946116	131946116	C	G	SNP	PIK3R4	NM_014602	human	genbank	54_36p	-1	validated	missense	c.637	p.E213Q	1	"HMMPfam_Pkinase_Tyr,superfamily_Kinase_like"	"HMMPfam_HEAT,HMMPfam_Pkinase_Tyr,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
PLCH1	23007	hgsc.bcm.edu	36	3	156715336	156715336	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	156715336	156715336	G	T	SNP	PLCH1	NM_014996	human	genbank	54_36p	-1	validated	missense	c.1412	p.S471Y	1	superfamily_PLC-like_Pdiesterase_TIM-brl	###############################################################################################################################################################################################################################################################	-	no_errors
PLSCR1	5359	hgsc.bcm.edu	36	3	147729140	147729140	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	147729140	147729140	G	A	SNP	PLSCR1	NM_021105	human	genbank	54_36p	-1	validated	missense	c.263	p.A88V	0.99	HMMPfam_Scramblase	HMMPfam_Scramblase	-	no_errors
PPP2R3A	5523	hgsc.bcm.edu	36	3	137228537	137228537	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	137228537	137228537	T	A	SNP	PPP2R3A	NM_002718	human	genbank	54_36p	1	reviewed	missense	c.2169	p.S723R	0.99	superfamily_EF-hand	"superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
PRICKLE2	166336	hgsc.bcm.edu	36	3	64059776	64059776	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	64059776	64059776	G	A	SNP	PRICKLE2	NM_198859	human	genbank	54_36p	-1	validated	silent	c.2526	p.I842	1	NULL	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
PRICKLE2	166336	hgsc.bcm.edu	36	3	64108040	64108040	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	64108040	64108040	T	A	SNP	PRICKLE2	NM_198859	human	genbank	54_36p	-1	validated	missense	c.1166	p.N389I	1	NULL	"HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_SSF57716"	-	no_errors
PRKAR2A	5576	hgsc.bcm.edu	36	3	48764620	48764620	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	48764620	48764620	T	G	SNP	PRKAR2A	NM_004157	human	genbank	54_36p	-1	reviewed	missense	c.1074	p.K358N	1	"superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding"	"superfamily_cAMP-dep_prot_kin_reg_I/II_a/b,HMMPfam_RIIa,HMMSmart_RIIa,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
PRKCI	5584	hgsc.bcm.edu	36	3	171496413	171496413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	3	171496413	171496413	C	T	SNP	PRKCI	NM_002740	human	genbank	54_36p	1	reviewed	missense	c.1438	p.R480C	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRG	5793	hgsc.bcm.edu	36	3	62117807	62117807	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	62117807	62117807	G	T	SNP	PTPRG	NM_002841	human	genbank	54_36p	1	reviewed	missense	c.709	p.V237F	1	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
QARS	5859	hgsc.bcm.edu	36	3	49112485	49112485	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	49112485	49112485	C	T	SNP	QARS	NM_005051	human	genbank	54_36p	-1	reviewed	missense	c.1208	p.R403Q	0.99	"superfamily_SSF52374,HMMPfam_tRNA-synt_1c"	"HMMPfam_tRNA_synt_1c_R1,HMMPfam_tRNA_synt_1c_R2,superfamily_SSF52374,HMMPfam_tRNA-synt_1c,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1c_C,superfamily_Ribosomal_L25rel"	-	no_errors
RHOA	387	hgsc.bcm.edu	36	3	49387977	49387977	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	49387977	49387977	C	A	SNP	RHOA	NM_001664	human	genbank	54_36p	-1	validated	missense	c.50	p.G17V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174"	-	no_errors
RTP1	132112	hgsc.bcm.edu	36	3	188400128	188400128	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	188400128	188400128	T	C	SNP	RTP1	NM_153708	human	genbank	54_36p	1	validated	missense	c.368	p.V123A	1	NULL	NULL	-	no_errors
SACM1L	22908	hgsc.bcm.edu	36	3	45726053	45726053	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	45726053	45726053	T	C	SNP	SACM1L	NM_014016	human	genbank	54_36p	1	validated	silent	c.393	p.F131	1	HMMPfam_Syja_N	HMMPfam_Syja_N	-	no_errors
SCAP	22937	hgsc.bcm.edu	36	3	47459376	47459376	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	47459376	47459376	A	C	SNP	SCAP	NM_012235	human	genbank	54_36p	-1	reviewed	missense	c.112	p.L38V	1	NULL	"superfamily_Multidrug efflux transporter AcrB transmembrane domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
SCN11A	11280	hgsc.bcm.edu	36	3	38864043	38864043	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	38864043	38864043	T	A	SNP	SCN11A	NM_014139	human	genbank	54_36p	-1	validated	missense	c.4522	p.M1508L	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc"	-	no_errors
SCN11A	11280	hgsc.bcm.edu	36	3	38896586	38896586	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	38896586	38896586	G	C	SNP	SCN11A	NM_014139	human	genbank	54_36p	-1	validated	silent	c.3252	p.P1084	0	superfamily_Voltage-gated potassium channels	"HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN5A	6331	hgsc.bcm.edu	36	3	38570913	38570913	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	38570913	38570913	G	-	DEL	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.4674	p.N1558fs	1	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ"	"(deletion:cds_exon[38570774,38571044])"	no_errors
SCN5A	6331	hgsc.bcm.edu	36	3	38626341	38626341	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	38626341	38626341	G	T	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	silent	c.822	p.G274	0.99	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN5A	6331	hgsc.bcm.edu	36	3	38626347	38626347	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	38626347	38626347	G	T	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	missense	c.816	p.F272L	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SEMA5B	54437	hgsc.bcm.edu	36	3	124125229	124125229	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	124125229	124125229	G	A	SNP	SEMA5B	NM_001031702	human	genbank	54_36p	-1	validated	silent	c.1197	p.F399	1	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
SETD2	29072	hgsc.bcm.edu	36	3	47137595	47137595	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	47137595	47137595	C	G	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	missense	c.2026	p.D676H	0.65	NULL	"superfamily_Ferritin/RR_like,superfamily_SSF82199,HMMSmart_AWS,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_SRI_2"	-	no_errors
SFMBT1	51460	hgsc.bcm.edu	36	3	52935168	52935168	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	52935168	52935168	G	A	SNP	SFMBT1	NM_001005158	human	genbank	54_36p	-1	reviewed	silent	c.1050	p.G350	1	"superfamily_Tudor/PWWP/MBT,HMMPfam_MBT"	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
SGEF	26084	hgsc.bcm.edu	36	3	155426382	155426382	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	155426382	155426382	A	G	SNP	uc003ezv.1	ENST00000356448	human	ensembl	54_36p	1	known	silent	c.1983	p.E661	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1"	-	no_errors
SHQ1	55164	hgsc.bcm.edu	36	3	72949148	72949148	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	72949148	72949148	G	T	SNP	SHQ1	NM_018130	human	genbank	54_36p	-1	validated	missense	c.805	p.R269S	0.06	HMMPfam_SHQ1	"superfamily_HSP20_chap,HMMPfam_CS,HMMPfam_SHQ1"	-	no_errors
SIAH2	6478	hgsc.bcm.edu	36	3	151942737	151942737	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	151942737	151942737	C	T	SNP	SIAH2	NM_005067	human	genbank	54_36p	-1	reviewed	missense	c.856	p.G286S	1	"HMMPfam_Sina,superfamily_Traf_like"	"PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING,HMMPfam_Sina,superfamily_Traf_like"	-	no_errors
SLC35A5	55032	hgsc.bcm.edu	36	3	113782516	113782516	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	113782516	113782516	A	G	SNP	SLC35A5	NM_017945	human	genbank	54_36p	1	provisional	missense	c.862	p.S288G	0.36	HMMPfam_Nuc_sug_transp	"superfamily_SSF103481,HMMPfam_Nuc_sug_transp"	-	no_errors
SLC4A7	9497	hgsc.bcm.edu	36	3	27465245	27465245	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	27465245	27465245	T	A	SNP	SLC4A7	NM_003615	human	genbank	54_36p	-1	validated	missense	c.163	p.S55C	1	NULL	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC4A7	9497	hgsc.bcm.edu	36	3	27473170	27473170	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	27473170	27473170	T	C	SNP	SLC4A7	NM_003615	human	genbank	54_36p	-1	validated	silent	c.9	p.R3	0.98	NULL	"HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein"	-	no_errors
SLC6A20	54716	hgsc.bcm.edu	36	3	45776362	45776362	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	45776362	45776362	G	A	SNP	SLC6A20	NM_020208	human	genbank	54_36p	-1	reviewed	silent	c.1620	p.D540	0.96	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLC6A20	54716	hgsc.bcm.edu	36	3	45798696	45798696	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	45798696	45798696	T	G	SNP	SLC6A20	NM_020208	human	genbank	54_36p	-1	reviewed	missense	c.145	p.I49L	0.99	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLC7A14	57709	hgsc.bcm.edu	36	3	171681274	171681274	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	171681274	171681274	C	T	SNP	SLC7A14	NM_020949	human	genbank	54_36p	-1	validated	silent	c.1491	p.G497	0.38	NULL	HMMPfam_AA_permease	-	no_errors
SR140	23350	hgsc.bcm.edu	36	3	144236469	144236469	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	144236469	144236469	C	T	SNP	SR140	NM_001080415	human	genbank	54_36p	1	provisional	missense	c.1903	p.R635C	1	"superfamily_ENTH/VHS domain,HMMSmart_SM00582"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,superfamily_ENTH/VHS domain,HMMSmart_SM00582"	-	no_errors
SRPRB	58477	hgsc.bcm.edu	36	3	135012709	135012709	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	135012709	135012709	T	C	SNP	SRPRB	NM_021203	human	genbank	54_36p	1	reviewed	missense	c.386	p.L129S	1	"HMMPfam_SRPRB,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_SRPRB,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
STXBP5L	9515	hgsc.bcm.edu	36	3	122111127	122111127	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	122111127	122111127	T	C	SNP	STXBP5L	NM_014980	human	genbank	54_36p	1	validated	silent	c.12	p.F4	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMPfam_LLGL"	-	no_errors
TBCCD1	55171	hgsc.bcm.edu	36	3	187759049	187759049	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	187759049	187759049	C	A	SNP	TBCCD1	NM_018138	human	genbank	54_36p	-1	validated	missense	c.343	p.V115L	1	NULL	"HMMPfam_TBCC,HMMSmart_CARP"	-	no_errors
TFRC	7037	hgsc.bcm.edu	36	3	197266559	197266559	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	197266559	197266559	T	C	SNP	TFRC	NM_003234	human	genbank	54_36p	-1	validated	missense	c.1688	p.Y563C	0.8	superfamily_Zn-dependent exopeptidases	"superfamily_Zn-dependent exopeptidases,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer"	-	no_errors
TGFBR2	7048	hgsc.bcm.edu	36	3	30688465	30688465	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	30688465	30688465	G	C	SNP	TGFBR2	NM_001024847	human	genbank	54_36p	1	reviewed	missense	c.861	p.K287N	1	"HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	"HMMPfam_ecTbetaR2,superfamily_Snake toxin-like,HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TIPARP	25976	hgsc.bcm.edu	36	3	157878713	157878724	+	In_Frame_Del	DEL	TAGACAAAGTCA	TAGACAAAGTCA	-	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	TAGACAAAGTCA	TAGACAAAGTCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	157878713	157878724	TAGACAAAGTCA	-	DEL	TIPARP	NM_015508	human	genbank	54_36p	1	provisional	in_frame_del	c.533_544	p.KVID180in_frame_del	0.865:0.891:0.979:0.980:0.978:0.990:0.992:0.990:0.987:0.985:0.947:0.956	NULL	"HMMPfam_zf-CCCH,superfamily_SSF56399,HMMPfam_PARP"	"(deletion:cds_exon[157878181,157879097])"	no_errors
TKT	7086	hgsc.bcm.edu	36	3	53235821	53235821	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	53235821	53235821	A	C	SNP	TKT	NM_001064	human	genbank	54_36p	-1	validated	missense	c.1687	p.Y563D	1	"superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C"	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transketolase_N,PatternScan_TRANSKETOLASE_1,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C"	-	no_errors
TKT	7086	hgsc.bcm.edu	36	3	53238390	53238390	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	53238390	53238390	C	T	SNP	TKT	NM_001064	human	genbank	54_36p	-1	validated	missense	c.1210	p.A404T	1	"HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)"	"HMMPfam_Transketolase_N,PatternScan_TRANSKETOLASE_1,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like,superfamily_Thiamin diphosphate-binding fold (THDP-binding)"	-	no_errors
TMEM39A	55254	hgsc.bcm.edu	36	3	120633692	120633692	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	120633692	120633692	G	A	SNP	TMEM39A	NM_018266	human	genbank	54_36p	-1	provisional	silent	c.1293	p.V431	0.97	HMMPfam_Tmp39	HMMPfam_Tmp39	-	no_errors
TNIK	23043	hgsc.bcm.edu	36	3	172428700	172428700	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	172428700	172428700	C	G	SNP	TNIK	NM_015028	human	genbank	54_36p	-1	provisional	missense	c.128	p.R43P	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
TNK2	10188	hgsc.bcm.edu	36	3	197096239	197096239	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	197096239	197096239	C	T	SNP	TNK2	NM_001010938	human	genbank	54_36p	-1	reviewed	silent	c.486	p.R162	0.99	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_GTPase_binding"	-	no_errors
TOMM70A	9868	hgsc.bcm.edu	36	3	101587814	101587814	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	101587814	101587814	T	G	SNP	TOMM70A	NM_014820	human	genbank	54_36p	-1	validated	missense	c.563	p.K188T	1	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMPfam_TPR_2"	-	no_errors
TOPBP1	11073	hgsc.bcm.edu	36	3	134841559	134841559	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	134841559	134841559	C	G	SNP	TOPBP1	NM_007027	human	genbank	54_36p	-1	reviewed	missense	c.1906	p.E636Q	1	"HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT"	"superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_Secretoglobin"	-	no_errors
TRH	7200	hgsc.bcm.edu	36	3	131178462	131178462	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	131178462	131178462	G	T	SNP	TRH	NM_007117	human	genbank	54_36p	1	validated	missense	c.442	p.V148F	0	HMMPfam_TRH	HMMPfam_TRH	-	no_errors
TRIM42	287015	hgsc.bcm.edu	36	3	141889473	141889473	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	141889473	141889473	T	C	SNP	TRIM42	NM_152616	human	genbank	54_36p	1	reviewed	missense	c.1259	p.V420A	0.01	NULL	"PatternScan_TNFR_NGFR_1,superfamily_RING/U-box,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
TRIM42	287015	hgsc.bcm.edu	36	3	141892504	141892504	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	141892504	141892504	A	C	SNP	TRIM42	NM_152616	human	genbank	54_36p	1	reviewed	missense	c.1865	p.Y622S	1	"HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_zf-B_box,HMMSmart_SM00336,PatternScan_TNFR_NGFR_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
TRIM59	286827	hgsc.bcm.edu	36	3	161639062	161639062	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	161639062	161639062	T	-	DEL	TRIM59	NM_173084	human	genbank	54_36p	-1	validated	frame_shift_del	c.604	p.S202fs	0	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain"	"(deletion:cds_exon[161638454,161639665])"	no_errors
TRIM71	131405	hgsc.bcm.edu	36	3	32890468	32890468	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	32890468	32890468	G	-	DEL	TRIM71	NM_001039111	human	genbank	54_36p	1	provisional	frame_shift_del	c.1007	p.R336fs	1	NULL	"HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_Filamin,HMMSmart_IG_FLMN,superfamily_Ig_E-set,superfamily_SSF101898,HMMPfam_NHL"	"(deletion:cds_exon[32890314,32890481])"	no_errors
TRIM71	131405	hgsc.bcm.edu	36	3	32907173	32907173	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	32907173	32907173	C	T	SNP	TRIM71	NM_001039111	human	genbank	54_36p	1	provisional	silent	c.1473	p.G491	0.85	"HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin"	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_NHL,HMMSmart_IG_FLMN,HMMSmart_RING,superfamily_Ig_E-set,HMMPfam_Filamin,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF101898"	-	no_errors
TTLL3	26140	hgsc.bcm.edu	36	3	9843888	9843888	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	9843888	9843888	T	C	SNP	TTLL3	NM_001025930	human	genbank	54_36p	1	provisional	missense	c.1082	p.F361S	1	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
TXNDC6	347736	hgsc.bcm.edu	36	3	139505158	139505158	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	139505158	139505158	C	T	SNP	TXNDC6	NM_178130	human	genbank	54_36p	-1	provisional	missense	c.626	p.G209D	1	"HMMPfam_NDK,superfamily_NDK,HMMSmart_NDK"	"superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1,HMMPfam_NDK,superfamily_NDK,HMMSmart_NDK"	-	no_errors
UBP1	7342	hgsc.bcm.edu	36	3	33425224	33425224	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	33425224	33425224	G	A	SNP	UBP1	NM_014517	human	genbank	54_36p	-1	validated	missense	c.889	p.P297S	1	NULL	"HMMPfam_CP2,superfamily_SAM/Pointed domain"	-	no_errors
ULK4	54986	hgsc.bcm.edu	36	3	41472020	41472020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	41472020	41472020	G	A	SNP	ULK4	NM_017886	human	genbank	54_36p	-1	validated	missense	c.3464	p.T1155I	1	superfamily_ARM-type_fold	"PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,superfamily_ARM-type_fold"	-	no_errors
ULK4	54986	hgsc.bcm.edu	36	3	41835989	41835989	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	41835989	41835989	T	-	DEL	ULK4	NM_017886	human	genbank	54_36p	-1	validated	frame_shift_del	c.1778	p.K593fs	1	superfamily_ARM-type_fold	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"(deletion:cds_exon[41835919,41836002])"	no_errors
UQCRC1	7384	hgsc.bcm.edu	36	3	48613215	48613215	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	48613215	48613215	G	C	SNP	UQCRC1	NM_003365	human	genbank	54_36p	-1	validated	silent	c.1029	p.T343	1	"HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase"	"superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16,HMMPfam_Peptidase_M16_C"	-	no_errors
USP4	7375	hgsc.bcm.edu	36	3	49312914	49312914	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	3	49312914	49312914	C	G	SNP	USP4	NM_003363	human	genbank	54_36p	-1	validated	missense	c.1502	p.R501T	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"HMMSmart_SM00695,HMMPfam_DUF1055,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
VILL	50853	hgsc.bcm.edu	36	3	38018307	38018308	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	3	38018307	38018308	-	C	INS	VILL	NM_015873	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1431_1432	p.H479fs	1.000:1.000	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin"	"HMMSmart_SM00262,superfamily_Actin depolymerizing proteins,HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24,PatternScan_CYTOCHROME_B5_1,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
WDR49	151790	hgsc.bcm.edu	36	3	168733444	168733444	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	168733444	168733444	T	G	SNP	WDR49	NM_178824	human	genbank	54_36p	-1	provisional	missense	c.914	p.E305A	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
WDR53	348793	hgsc.bcm.edu	36	3	197766020	197766020	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	197766020	197766020	T	C	SNP	WDR53	NM_182627	human	genbank	54_36p	-1	provisional	missense	c.536	p.E179G	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
XIRP1	165904	hgsc.bcm.edu	36	3	39204941	39204941	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	39204941	39204941	C	A	SNP	XIRP1	NM_194293	human	genbank	54_36p	-1	provisional	missense	c.1000	p.D334Y	0.4	NULL	HMMPfam_Xin	-	no_errors
XPC	7508	hgsc.bcm.edu	36	3	14175227	14175227	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	3	14175227	14175227	T	G	SNP	XPC	ENST00000285021	human	ensembl	54_36p	-1	known	missense	c.1160	p.K387T	0.16	NULL	"HMMPfam_Rad4,HMMPfam_BHD_1,HMMPfam_BHD_2,HMMPfam_BHD_3"	-	no_errors
XRN1	54464	hgsc.bcm.edu	36	3	143514209	143514209	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	143514209	143514209	T	C	SNP	XRN1	NM_019001	human	genbank	54_36p	-1	validated	missense	c.4739	p.H1580R	0.88	NULL	"HMMPfam_XRN_N,superfamily_dsRNA-binding domain-like"	-	no_errors
XRN1	54464	hgsc.bcm.edu	36	3	143623024	143623024	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	143623024	143623024	A	T	SNP	XRN1	NM_019001	human	genbank	54_36p	-1	validated	missense	c.1019	p.L340H	1	NULL	"HMMPfam_XRN_N,superfamily_dsRNA-binding domain-like"	-	no_errors
ZBTB11	27107	hgsc.bcm.edu	36	3	102853083	102853083	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	3	102853083	102853083	G	A	SNP	ZBTB11	NM_014415	human	genbank	54_36p	-1	validated	nonsense	c.2779	p.R927*	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZDHHC23	254887	hgsc.bcm.edu	36	3	115155677	115155677	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	115155677	115155677	G	T	SNP	ZDHHC23	NM_173570	human	genbank	54_36p	1	validated	missense	c.602	p.G201V	0	NULL	HMMPfam_zf-DHHC	-	no_errors
ZIC1	7545	hgsc.bcm.edu	36	3	148613880	148613880	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	3	148613880	148613880	C	G	SNP	ZIC1	NM_003412	human	genbank	54_36p	1	validated	missense	c.1196	p.S399C	1	NULL	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZMAT3	64393	hgsc.bcm.edu	36	3	180227980	180227980	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	180227980	180227980	G	A	SNP	ZMAT3	NM_022470	human	genbank	54_36p	-1	reviewed	missense	c.583	p.R195W	0.29	NULL	"HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF148	7707	hgsc.bcm.edu	36	3	126434866	126434866	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	126434866	126434866	T	A	SNP	ZNF148	NM_021964	human	genbank	54_36p	-1	validated	missense	c.1394	p.D465V	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF445	353274	hgsc.bcm.edu	36	3	44467430	44467430	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	44467430	44467430	A	G	SNP	ZNF445	NM_181489	human	genbank	54_36p	-1	validated	silent	c.627	p.L209	0.05	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF654	55279	hgsc.bcm.edu	36	3	88272850	88272850	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	3	88272850	88272850	A	C	SNP	ZNF654	NM_018293	human	genbank	54_36p	1	validated	missense	c.1700	p.K567T	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ADD1	118	hgsc.bcm.edu	36	4	2898181	2898181	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	2898181	2898181	A	C	SNP	ADD1	NM_176801	human	genbank	54_36p	1	reviewed	silent	c.1969	p.R657	1	NULL	"superfamily_Aldolase_II_N,HMMPfam_Aldolase_II"	-	no_errors
AFM	173	hgsc.bcm.edu	36	4	74572362	74572362	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	74572362	74572362	G	T	SNP	AFM	NM_001133	human	genbank	54_36p	1	reviewed	missense	c.673	p.G225W	0.95	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like"	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like,PatternScan_ALBUMIN"	-	no_errors
ALB	213	hgsc.bcm.edu	36	4	74498093	74498093	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	74498093	74498093	C	T	SNP	ALB	NM_000477	human	genbank	54_36p	1	reviewed	silent	c.936	p.H312	0.54	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like"	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like,PatternScan_ALBUMIN"	-	no_errors
ANK2	287	hgsc.bcm.edu	36	4	114398988	114398988	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	114398988	114398988	A	G	SNP	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	missense	c.1358	p.N453S	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
ANK2	287	hgsc.bcm.edu	36	4	114499583	114499584	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	114499583	114499584	-	G	INS	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.10360_10361	p.T3457fs	0.019:0.001	NULL	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
ANKRD17	26057	hgsc.bcm.edu	36	4	74170001	74170001	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	74170001	74170001	C	T	SNP	ANKRD17	NM_032217	human	genbank	54_36p	-1	reviewed	missense	c.6988	p.G2330S	1	NULL	"HMMPfam_MutS_V,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
ANKRD17	26057	hgsc.bcm.edu	36	4	74175444	74175444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	74175444	74175444	G	C	SNP	ANKRD17	NM_032217	human	genbank	54_36p	-1	reviewed	missense	c.6765	p.S2255R	1	NULL	"HMMPfam_MutS_V,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
ART3	419	hgsc.bcm.edu	36	4	77222084	77222084	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	77222084	77222084	C	T	SNP	ART3	NM_001179	human	genbank	54_36p	1	validated	silent	c.153	p.Y51	0.12	"superfamily_SSF56399,HMMPfam_ART"	"superfamily_SSF56399,HMMPfam_ART,PatternScan_ART"	-	no_errors
ART3	419	hgsc.bcm.edu	36	4	77222495	77222495	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	77222495	77222495	A	T	SNP	ART3	NM_001179	human	genbank	54_36p	1	validated	silent	c.564	p.S188	0	"HMMPfam_ART,superfamily_SSF56399"	"HMMPfam_ART,PatternScan_ART,superfamily_SSF56399"	-	no_errors
BMP2K	55589	hgsc.bcm.edu	36	4	80005744	80005744	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	80005744	80005744	T	C	SNP	BMP2K	NM_198892	human	genbank	54_36p	1	reviewed	silent	c.1077	p.D359	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BMPR1B	658	hgsc.bcm.edu	36	4	96244728	96244728	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	96244728	96244728	A	T	SNP	BMPR1B	NM_001203	human	genbank	54_36p	1	reviewed	missense	c.130	p.N44Y	1	"HMMPfam_Activin_recp,superfamily_Snake toxin-like"	"HMMPfam_Activin_recp,superfamily_Snake toxin-like,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BOD1L	259282	hgsc.bcm.edu	36	4	13210996	13210996	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	13210996	13210996	C	T	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	missense	c.6626	p.S2209N	1	superfamily_SSF81995	"superfamily_SSF81995,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
BOD1L	259282	hgsc.bcm.edu	36	4	13221695	13221695	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	13221695	13221695	A	G	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	silent	c.1452	p.S484	1	superfamily_SSF81995	"HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF81995"	-	no_errors
C4orf14	84273	hgsc.bcm.edu	36	4	57525376	57525376	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	57525376	57525376	C	A	SNP	C4orf14	NM_032313	human	genbank	54_36p	-1	provisional	missense	c.1838	p.G613V	0.01	NULL	"superfamily_SSF52540,HMMPfam_MMR_HSR1"	-	no_errors
FAM193A	8603	hgsc.bcm.edu	36	4	2666651	2666651	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	2666651	2666651	C	A	SNP	C4orf8	NM_003704	human	genbank	54_36p	1	validated	silent	c.2400	p.G800	0.93	NULL	NULL	-	no_errors
CCDC158	339965	hgsc.bcm.edu	36	4	77502321	77502321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	77502321	77502321	C	T	SNP	FLJ25770	NM_001042784	human	genbank	54_36p	-1	validated	missense	c.2002	p.E668K	0.08	NULL	NULL	-	no_errors
CCNG2	901	hgsc.bcm.edu	36	4	78304535	78304535	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	78304535	78304535	G	C	SNP	CCNG2	NM_004354	human	genbank	54_36p	1	reviewed	missense	c.790	p.D264H	1	NULL	"superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_N"	-	no_errors
CENPE	1062	hgsc.bcm.edu	36	4	104285137	104285137	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	104285137	104285137	A	G	SNP	CENPE	NM_001813	human	genbank	54_36p	-1	validated	silent	c.4945	p.L1649	0	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I"	-	no_errors
CNGA1	1259	hgsc.bcm.edu	36	4	47633854	47633854	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	47633854	47633854	C	G	SNP	CNGA1	NM_000087	human	genbank	54_36p	-1	reviewed	missense	c.1414	p.D472H	1	superfamily_cAMP-binding domain-like	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
CNGA1	1259	hgsc.bcm.edu	36	4	47640057	47640057	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	47640057	47640057	G	C	SNP	CNGA1	NM_000087	human	genbank	54_36p	-1	reviewed	nonsense	c.347	p.S116*	0.92	NULL	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like,superfamily_Voltage-gated potassium channels"	-	no_errors
COQ2	27235	hgsc.bcm.edu	36	4	84407796	84407796	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	84407796	84407796	G	A	SNP	COQ2	NM_015697	human	genbank	54_36p	-1	validated	silent	c.957	p.A319	0.49	HMMPfam_UbiA	"HMMPfam_UbiA,PatternScan_UBIA"	-	no_errors
CXCL13	10563	hgsc.bcm.edu	36	4	78748015	78748015	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	78748015	78748015	T	G	SNP	CXCL13	NM_006419	human	genbank	54_36p	1	validated	splice_site	c.197+2	e2+2	1	-	-	-	no_errors
D4S234E	27065	hgsc.bcm.edu	36	4	4444175	4444175	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	4444175	4444175	G	C	SNP	D4S234E	NM_001040101	human	genbank	54_36p	1	validated	missense	c.202	p.E68Q	1	HMMPfam_Calcyon	HMMPfam_Calcyon	-	no_errors
DCHS2	54798	hgsc.bcm.edu	36	4	155375228	155375228	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	155375228	155375228	C	G	SNP	DCHS2	NM_017639	human	genbank	54_36p	-1	validated	missense	c.8661	p.L2887F	0.74	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DCHS2	54798	hgsc.bcm.edu	36	4	155525030	155525030	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	155525030	155525030	G	A	SNP	DCHS2	NM_017639	human	genbank	54_36p	-1	validated	silent	c.174	p.L58	0	superfamily_Cadherin-like	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
DCLK2	166614	hgsc.bcm.edu	36	4	151372943	151372943	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	151372943	151372943	A	G	SNP	DCLK2	NM_001040260	human	genbank	54_36p	1	validated	missense	c.1304	p.H435R	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DHX15	1665	hgsc.bcm.edu	36	4	24152731	24152731	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	24152731	24152731	G	A	SNP	DHX15	NM_001358	human	genbank	54_36p	-1	reviewed	nonsense	c.1348	p.R450*	1	"superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C"	"HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_AAA,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
DKK2	27123	hgsc.bcm.edu	36	4	108065170	108065170	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	108065170	108065170	A	T	SNP	DKK2	NM_014421	human	genbank	54_36p	-1	reviewed	silent	c.510	p.T170	0.99	NULL	HMMPfam_Dickkopf_N	-	no_errors
DKK2	27123	hgsc.bcm.edu	36	4	108065300	108065300	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	108065300	108065300	C	G	SNP	DKK2	NM_014421	human	genbank	54_36p	-1	reviewed	missense	c.380	p.C127S	1	HMMPfam_Dickkopf_N	HMMPfam_Dickkopf_N	-	no_errors
EDNRA	1909	hgsc.bcm.edu	36	4	148626405	148626405	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	148626405	148626405	G	A	SNP	EDNRA	NM_001957	human	genbank	54_36p	1	validated	missense	c.122	p.R41H	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ENAM	10117	hgsc.bcm.edu	36	4	71728122	71728122	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	71728122	71728122	T	A	SNP	ENAM	NM_031889	human	genbank	54_36p	1	validated	missense	c.2115	p.D705E	0.2	NULL	NULL	-	no_errors
EVC2	132884	hgsc.bcm.edu	36	4	5675310	5675310	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	5675310	5675310	C	A	SNP	EVC2	NM_147127	human	genbank	54_36p	-1	validated	missense	c.2356	p.A786S	0	NULL	NULL	-	no_errors
EVC2	132884	hgsc.bcm.edu	36	4	5675312	5675312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	5675312	5675312	G	A	SNP	EVC2	NM_147127	human	genbank	54_36p	-1	validated	missense	c.2354	p.A785V	0.24	NULL	NULL	-	no_errors
FAM13A	10144	hgsc.bcm.edu	36	4	89890081	89890081	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	89890081	89890081	C	T	SNP	FAM13A	NM_014883	human	genbank	54_36p	-1	validated	missense	c.1943	p.R648Q	0.01	NULL	"superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
FAM160A1	729830	hgsc.bcm.edu	36	4	152779297	152779297	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	152779297	152779297	G	A	SNP	FAM160A1	XM_001718535	human	genbank	54_36p	1	model	missense	c.1162	p.A388T	1	HMMPfam_RAI16-like	HMMPfam_RAI16-like	-	no_errors
FAT1	2195	hgsc.bcm.edu	36	4	187762615	187762615	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	187762615	187762615	C	G	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.10458	p.E3486D	0.01	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	###############################################################################################################################################################################################################################################################	-	no_errors
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	153468834	153468834	C	T	SNP	FBXW7	NM_033632	human	genbank	54_36p	-1	reviewed	missense	c.1394	p.R465H	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
TMEM150C	441027	hgsc.bcm.edu	36	4	83642942	83642942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	83642942	83642942	C	T	SNP	FLJ12993	NM_001080506	human	genbank	54_36p	-1	predicted	missense	c.197	p.C66Y	1	HMMPfam_Frag1	HMMPfam_Frag1	-	no_errors
ARHGEF38	54848	hgsc.bcm.edu	36	4	106693383	106693383	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	106693383	106693383	A	C	SNP	FLJ20184	NM_017700	human	genbank	54_36p	1	predicted	missense	c.12	p.K4N	1	NULL	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF"	-	no_errors
ARHGEF38	54848	hgsc.bcm.edu	36	4	106729858	106729858	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	106729858	106729858	G	C	SNP	FLJ20184	NM_017700	human	genbank	54_36p	1	predicted	missense	c.201	p.K67N	1	NULL	"HMMPfam_RhoGEF,superfamily_DH-domain,PatternScan_DH_1"	-	no_errors
FRG1	2483	hgsc.bcm.edu	36	4	191099194	191099194	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	191099194	191099194	C	T	SNP	FRG1	NM_004477	human	genbank	54_36p	1	reviewed	silent	c.36	p.L12	1	NULL	"PatternScan_LIPOCALIN,superfamily_Actin-crosslinking proteins,HMMPfam_FRG1"	-	no_errors
FSTL5	56884	hgsc.bcm.edu	36	4	162900106	162900106	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	162900106	162900106	C	G	SNP	FSTL5	NM_020116	human	genbank	54_36p	-1	validated	missense	c.634	p.D212H	1	superfamily_SSF47473	"PatternScan_KAZAL,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_efhand,superfamily_SSF47473,PatternScan_EF_HAND_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_Amine_DH_B_like"	-	no_errors
GABRA4	2557	hgsc.bcm.edu	36	4	46667929	46667929	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	46667929	46667929	T	A	SNP	GABRA4	NM_000809	human	genbank	54_36p	-1	reviewed	missense	c.802	p.I268F	1	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRB1	2560	hgsc.bcm.edu	36	4	47100191	47100191	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	47100191	47100191	A	T	SNP	GABRB1	NM_000812	human	genbank	54_36p	1	reviewed	missense	c.644	p.D215V	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRB1	2560	hgsc.bcm.edu	36	4	47122715	47122715	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	47122715	47122715	G	C	SNP	GABRB1	NM_000812	human	genbank	54_36p	1	reviewed	missense	c.1348	p.D450H	1	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM"	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GABRG1	2565	hgsc.bcm.edu	36	4	45738000	45738000	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	45738000	45738000	G	A	SNP	GABRG1	NM_173536	human	genbank	54_36p	-1	reviewed	missense	c.1160	p.T387I	0.22	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRG1	2565	hgsc.bcm.edu	36	4	45748339	45748339	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	45748339	45748339	C	T	SNP	GABRG1	NM_173536	human	genbank	54_36p	-1	reviewed	silent	c.990	p.V330	1	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM"	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GC	2638	hgsc.bcm.edu	36	4	72848029	72848029	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	72848029	72848029	A	T	SNP	GC	NM_000583	human	genbank	54_36p	-1	reviewed	missense	c.661	p.S221T	1	"HMMSmart_SM00103,superfamily_Serum albumin-like,HMMPfam_Serum_albumin"	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like,PatternScan_ALBUMIN,HMMPfam_VitD-bind_III"	-	no_errors
GK2	2712	hgsc.bcm.edu	36	4	80547003	80547003	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	80547003	80547003	G	T	SNP	GK2	NM_033214	human	genbank	54_36p	-1	validated	missense	c.1376	p.A459D	0.98	"superfamily_SSF53067,HMMPfam_FGGY_C"	"superfamily_SSF53067,HMMPfam_FGGY_N,PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2"	-	no_errors
GLRA3	8001	hgsc.bcm.edu	36	4	175834847	175834847	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	175834847	175834847	G	A	SNP	GLRA3	NM_006529	human	genbank	54_36p	-1	validated	missense	c.884	p.T295M	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
GLRA3	8001	hgsc.bcm.edu	36	4	175946608	175946608	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	175946608	175946608	C	G	SNP	GLRA3	NM_006529	human	genbank	54_36p	-1	validated	missense	c.133	p.D45H	1	"HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GPRIN3	285513	hgsc.bcm.edu	36	4	90388256	90388256	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	90388256	90388256	G	C	SNP	GPRIN3	NM_198281	human	genbank	54_36p	-1	validated	missense	c.2029	p.Q677E	1	NULL	NULL	-	no_errors
GUCY1A3	2982	hgsc.bcm.edu	36	4	156851177	156851177	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	156851177	156851177	G	A	SNP	GUCY1A3	NM_000856	human	genbank	54_36p	1	validated	missense	c.410	p.G137D	1	NULL	"HMMPfam_HNOBA,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
HERC5	51191	hgsc.bcm.edu	36	4	89616064	89616064	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	89616064	89616064	C	T	SNP	HERC5	NM_016323	human	genbank	54_36p	1	reviewed	missense	c.1442	p.S481F	0.91	NULL	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
IL8	3576	hgsc.bcm.edu	36	4	74826241	74826241	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	74826241	74826241	C	A	SNP	IL8	NM_000584	human	genbank	54_36p	1	reviewed	nonsense	c.183	p.C61*	0.02	"HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CXC"	"HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CXC"	-	no_errors
INTU	27152	hgsc.bcm.edu	36	4	128784161	128784161	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	128784161	128784161	A	G	SNP	INTU	NM_015693	human	genbank	54_36p	1	provisional	missense	c.182	p.K61R	1	NULL	"HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
IRF2	3660	hgsc.bcm.edu	36	4	185576686	185576686	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	185576686	185576686	T	A	SNP	IRF2	NM_002199	human	genbank	54_36p	-1	reviewed	nonsense	c.358	p.K120*	1	NULL	"HMMSmart_SM00348,superfamily_Winged helix DNA-binding domain,HMMPfam_IRF,PatternScan_IRF"	-	no_errors
KCTD8	386617	hgsc.bcm.edu	36	4	43871767	43871767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	43871767	43871767	G	A	SNP	KCTD8	NM_198353	human	genbank	54_36p	-1	validated	missense	c.1219	p.R407C	1	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra"	-	no_errors
KIAA1109	84162	hgsc.bcm.edu	36	4	123337348	123337348	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	123337348	123337348	G	A	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	missense	c.1161	p.M387I	1	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_FSA_C"	-	no_errors
FAM190A	401145	hgsc.bcm.edu	36	4	91540245	91540245	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	91540245	91540245	T	A	SNP	KIAA1680	NM_207491	human	genbank	54_36p	1	validated	missense	c.1545	p.D515E	1	NULL	NULL	-	no_errors
KIT	3815	hgsc.bcm.edu	36	4	55219002	55219002	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	55219002	55219002	A	G	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	missense	c.64	p.T22A	1	NULL	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
KIT	3815	hgsc.bcm.edu	36	4	55256459	55256459	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	55256459	55256459	C	T	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	missense	c.92	p.P31L	0.98	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726"	-	no_errors
KIT	3815	hgsc.bcm.edu	36	4	55288401	55288401	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	55288401	55288401	C	A	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	nonsense	c.1710	p.Y570*	1	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726"	-	no_errors
KLHL5	51088	hgsc.bcm.edu	36	4	38791160	38791160	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	38791160	38791160	C	T	SNP	KLHL5	NM_015990	human	genbank	54_36p	1	validated	missense	c.1952	p.T651M	0.97	"superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
LIMCH1	22998	hgsc.bcm.edu	36	4	41381272	41381272	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	41381272	41381272	C	G	SNP	LIMCH1	NM_014988	human	genbank	54_36p	1	validated	missense	c.2795	p.T932R	0	NULL	"HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
LRBA	987	hgsc.bcm.edu	36	4	151423206	151423206	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	151423206	151423206	C	T	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.8195	p.R2732K	1	superfamily_WD40 repeat-like	"superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
MAN2B2	23324	hgsc.bcm.edu	36	4	6670082	6670082	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	6670082	6670082	G	T	SNP	MAN2B2	NM_015274	human	genbank	54_36p	1	validated	missense	c.2776	p.D926Y	1	"superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C"	"superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38,superfamily_Families 57/38 glycoside transferase middle domain,HMMPfam_Alpha-mann_mid,superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C"	-	no_errors
MANBA	4126	hgsc.bcm.edu	36	4	103864166	103864166	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	103864166	103864166	A	G	SNP	MANBA	NM_005908	human	genbank	54_36p	-1	reviewed	missense	c.277	p.W93R	0.98	superfamily_Gal_bind_like	"superfamily_Gal_bind_like,superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_2_C"	-	no_errors
MTTP	4547	hgsc.bcm.edu	36	4	100735064	100735064	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	100735064	100735064	G	T	SNP	MTTP	NM_000253	human	genbank	54_36p	1	reviewed	splice_site	c.909+1	e7+1	1	-	-	-	no_errors
MTTP	4547	hgsc.bcm.edu	36	4	100759232	100759232	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	100759232	100759232	G	T	SNP	MTTP	NM_000253	human	genbank	54_36p	1	reviewed	nonsense	c.2296	p.E766*	1	NULL	"superfamily_Lipid_transp_b-sht_shell,HMMPfam_Vitellogenin_N,HMMSmart_LPD_N,superfamily_LV_superhelical"	-	no_errors
NFKB1	4790	hgsc.bcm.edu	36	4	103724953	103724953	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	103724953	103724953	G	A	SNP	NFKB1	NM_003998	human	genbank	54_36p	1	reviewed	missense	c.1004	p.R335Q	1	"superfamily_ANK,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD,PatternScan_REL_1,superfamily_ANK,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Ank,HMMSmart_ANK,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
NFXL1	152518	hgsc.bcm.edu	36	4	47548694	47548694	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	47548694	47548694	C	T	SNP	NFXL1	NM_152995	human	genbank	54_36p	-1	validated	missense	c.2444	p.R815H	1	NULL	"superfamily_RING/U-box,PatternScan_ZF_PHD_1,HMMPfam_zf-NF-X1,HMMSmart_SM00438"	-	no_errors
OTUD4	54726	hgsc.bcm.edu	36	4	146312272	146312272	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	146312272	146312272	C	A	SNP	OTUD4	NM_001102653	human	genbank	54_36p	-1	reviewed	missense	c.99	p.Q33H	1	"superfamily_SSF54001,HMMPfam_OTU"	"superfamily_SSF54001,HMMPfam_OTU"	-	no_errors
PDCL2	132954	hgsc.bcm.edu	36	4	56123405	56123405	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	56123405	56123405	A	C	SNP	PDCL2	NM_152401	human	genbank	54_36p	-1	reviewed	missense	c.494	p.F165C	1	"HMMPfam_Phosducin,superfamily_Thiordxn-like_fd"	"HMMPfam_Phosducin,superfamily_Thiordxn-like_fd"	-	no_errors
PDE6B	5158	hgsc.bcm.edu	36	4	640768	640770	+	In_Frame_Del	DEL	AAA	AAA	-	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	AAA	AAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	640768	640770	AAA	-	DEL	PDE6B	NM_000283	human	genbank	54_36p	1	reviewed	in_frame_del	c.1213_1215	p.K405in_frame_del	1.000:1.000:0.992	"HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like"	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	"(deletion:cds_exon[640663,640812])"	no_errors
PDGFC	56034	hgsc.bcm.edu	36	4	157951447	157951447	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	157951447	157951447	C	A	SNP	PDGFC	NM_016205	human	genbank	54_36p	-1	reviewed	missense	c.487	p.V163F	0.97	"HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMSmart_SM00042,HMMPfam_CUB,superfamily_Spermadhesin CUB domain,superfamily_Cystine-knot cytokines,HMMSmart_SM00141,HMMPfam_PDGF"	-	no_errors
PIGG	54872	hgsc.bcm.edu	36	4	510847	510864	+	In_Frame_Del	DEL	CTCTCTGTCCTGGCTGCC	CTCTCTGTCCTGGCTGCC	-	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	CTCTCTGTCCTGGCTGCC	CTCTCTGTCCTGGCTGCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	510847	510864	CTCTCTGTCCTGGCTGCC	-	DEL	PIGG	NM_017733	human	genbank	54_36p	1	validated	in_frame_del	c.2065_2082	p.VLAALS691in_frame_del	0.997:1.000:1.000:1.000:0.996:0.001:0.013:0.405:0.519:0.935:0.998:0.998:0.969:0.967:0.629:0.775:0.737:0.008	NULL	superfamily_Alkaline_phosphatase_core	"(deletion:cds_exon[510828,511019])"	no_errors
POLN	353497	hgsc.bcm.edu	36	4	2179581	2179581	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	2179581	2179581	G	A	SNP	POLN	NM_181808	human	genbank	54_36p	-1	validated	silent	c.645	p.L215	0.91	NULL	"superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482"	-	no_errors
RBPJ	3516	hgsc.bcm.edu	36	4	26041436	26041436	+	Silent	SNP	C	C	T	rs1064380	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	26041436	26041436	C	T	SNP	RBPJ	NM_005349	human	genbank	54_36p	1	validated	silent	c.1212	p.V404	0.97	"superfamily_E set domains,HMMPfam_TIG"	"superfamily_p53-like transcription factors,HMMPfam_LAG1-DNAbind,superfamily_DNA-binding protein LAG-1 (CSL),HMMPfam_Beta-trefoil,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
RFC1	5981	hgsc.bcm.edu	36	4	38978038	38978038	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	38978038	38978038	G	A	SNP	RFC1	NM_002913	human	genbank	54_36p	-1	reviewed	nonsense	c.2806	p.Q936*	1	"superfamily_Pol_clamp_load_C,HMMPfam_RFC1"	"superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1"	-	no_errors
SCLT1	132320	hgsc.bcm.edu	36	4	130179665	130179665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	130179665	130179665	C	G	SNP	SCLT1	NM_144643	human	genbank	54_36p	-1	validated	missense	c.271	p.V91L	1	NULL	NULL	-	no_errors
SEC24B	10427	hgsc.bcm.edu	36	4	110635355	110635355	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	110635355	110635355	A	G	SNP	SEC24B	NM_006323	human	genbank	54_36p	1	reviewed	missense	c.1382	p.Y461C	1	superfamily_beta-sandwich domain of Sec23/24	###############################################################################################################################################################################################################################################################	-	no_errors
SHISA3	152573	hgsc.bcm.edu	36	4	42097904	42097904	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	42097904	42097904	G	C	SNP	SHISA3	NM_001080505	human	genbank	54_36p	1	provisional	missense	c.396	p.Q132H	1	NULL	NULL	-	no_errors
SLC2A9	56606	hgsc.bcm.edu	36	4	9531239	9531239	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	9531239	9531239	C	G	SNP	SLC2A9	NM_020041	human	genbank	54_36p	-1	reviewed	silent	c.870	p.L290	1	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SLC4A4	8671	hgsc.bcm.edu	36	4	72630963	72630963	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	72630963	72630963	G	A	SNP	SLC4A4	NM_001098484	human	genbank	54_36p	1	reviewed	nonsense	c.2475	p.W825*	1	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC4A4	8671	hgsc.bcm.edu	36	4	72639728	72639728	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	72639728	72639728	C	A	SNP	SLC4A4	NM_001098484	human	genbank	54_36p	1	reviewed	missense	c.2702	p.P901H	1	HMMPfam_HCO3_cotransp	"HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein"	-	no_errors
SLIT2	9353	hgsc.bcm.edu	36	4	20228183	20228183	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	20228183	20228183	C	G	SNP	SLIT2	NM_004787	human	genbank	54_36p	1	provisional	missense	c.4160	p.P1387R	1	"superfamily_EGF/Laminin,HMMSmart_SM00181"	###############################################################################################################################################################################################################################################################	-	no_errors
SMAD1	4086	hgsc.bcm.edu	36	4	146698398	146698398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	146698398	146698398	G	C	SNP	SMAD1	NM_001003688	human	genbank	54_36p	1	reviewed	missense	c.1260	p.W420C	1	"superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524"	"superfamily_SMAD MH1 domain,HMMSmart_SM00523,HMMPfam_MH1,superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524"	-	no_errors
SPATA18	132671	hgsc.bcm.edu	36	4	52630789	52630789	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	52630789	52630789	G	C	SNP	SPATA18	NM_145263	human	genbank	54_36p	1	provisional	silent	c.468	p.S156	0.99	NULL	NULL	-	no_errors
SPOCK3	50859	hgsc.bcm.edu	36	4	167892745	167892745	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	167892745	167892745	C	A	SNP	SPOCK3	NM_016950	human	genbank	54_36p	-1	validated	nonsense	c.1213	p.E405*	1	NULL	"superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_2,HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211"	-	no_errors
SRP72	6731	hgsc.bcm.edu	36	4	57048888	57048888	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	57048888	57048888	A	C	SNP	SRP72	NM_006947	human	genbank	54_36p	1	validated	silent	c.1176	p.A392	0.78	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMPfam_SRP72"	-	no_errors
SYNPO2	171024	hgsc.bcm.edu	36	4	120167701	120167701	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	120167701	120167701	G	A	SNP	SYNPO2	NM_133477	human	genbank	54_36p	1	validated	silent	c.729	p.S243	0	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
TACC3	10460	hgsc.bcm.edu	36	4	1700105	1700106	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	4	1700105	1700106	-	C	INS	TACC3	NM_006342	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1178_1179	p.M396fs	0.029:0.000	NULL	HMMPfam_TACC	-	no_errors
TLR3	7098	hgsc.bcm.edu	36	4	187241239	187241239	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	187241239	187241239	C	G	SNP	TLR3	NM_003265	human	genbank	54_36p	1	reviewed	missense	c.1405	p.L469V	0.01	superfamily_SSF52058	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
TMEM33	55161	hgsc.bcm.edu	36	4	41650930	41650930	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	41650930	41650930	A	C	SNP	TMEM33	NM_018126	human	genbank	54_36p	1	validated	missense	c.701	p.Q234P	1	HMMPfam_UPF0121	HMMPfam_UPF0121	-	no_errors
TMPRSS11B	132724	hgsc.bcm.edu	36	4	68779575	68779575	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	68779575	68779575	G	T	SNP	TMPRSS11B	NM_182502	human	genbank	54_36p	-1	validated	nonsense	c.627	p.Y209*	0	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_SEA domain,HMMPfam_SEA,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS"	-	no_errors
TMPRSS11D	9407	hgsc.bcm.edu	36	4	68375829	68375829	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	68375829	68375829	A	T	SNP	TMPRSS11D	NM_004262	human	genbank	54_36p	-1	reviewed	missense	c.697	p.S233T	0	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_SSF82671,HMMSmart_SEA,HMMPfam_SEA,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
TMPRSS11F	389208	hgsc.bcm.edu	36	4	68647321	68647321	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	68647321	68647321	T	A	SNP	TMPRSS11F	NM_207407	human	genbank	54_36p	-1	validated	silent	c.42	p.S14	0.79	NULL	"superfamily_SSF82671,HMMSmart_SEA,HMMPfam_SEA,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
TTC29	83894	hgsc.bcm.edu	36	4	147944251	147944251	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	147944251	147944251	C	-	DEL	TTC29	NM_031956	human	genbank	54_36p	-1	validated	frame_shift_del	c.1138	p.A380fs	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"(deletion:cds_exon[147944059,147944287])"	no_errors
UGDH	7358	hgsc.bcm.edu	36	4	39188367	39188367	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	39188367	39188367	C	A	SNP	UGDH	NM_003359	human	genbank	54_36p	-1	reviewed	splice_site	c.663+1	e4+1	1	-	-	-	no_errors
UGT2A2	574537	hgsc.bcm.edu	36	4	70539788	70539788	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	70539788	70539788	G	A	SNP	UGT2A2	NM_001105677	human	genbank	54_36p	-1	inferred	nonsense	c.136	p.Q46*	0.22	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UNC5C	8633	hgsc.bcm.edu	36	4	96359271	96359271	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	96359271	96359271	G	A	SNP	UNC5C	NM_003728	human	genbank	54_36p	-1	reviewed	missense	c.1517	p.T506I	1	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	-	no_errors
USO1	8615	hgsc.bcm.edu	36	4	76927369	76927369	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	76927369	76927369	T	C	SNP	USO1	NM_003715	human	genbank	54_36p	1	reviewed	missense	c.986	p.I329T	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Uso1_p115_head,HMMPfam_Uso1_p115_C"	-	no_errors
USO1	8615	hgsc.bcm.edu	36	4	76940641	76940641	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	76940641	76940641	C	G	SNP	USO1	NM_003715	human	genbank	54_36p	1	reviewed	nonsense	c.1677	p.Y559*	1	"HMMPfam_Uso1_p115_head,superfamily_ARM repeat"	"HMMPfam_Uso1_p115_head,HMMPfam_Uso1_p115_C,superfamily_ARM repeat"	-	no_errors
USO1	8615	hgsc.bcm.edu	36	4	76940643	76940643	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	76940643	76940643	T	-	DEL	USO1	NM_003715	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1679	p.M560fs	0.99	"HMMPfam_Uso1_p115_head,superfamily_ARM repeat"	"HMMPfam_Uso1_p115_head,HMMPfam_Uso1_p115_C,superfamily_ARM repeat"	"(deletion:cds_exon[76940528,76940646])"	no_errors
USP46	64854	hgsc.bcm.edu	36	4	53187119	53187119	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	4	53187119	53187119	C	-	DEL	USP46	NM_022832	human	genbank	54_36p	-1	validated	frame_shift_del	c.384	p.L128fs	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	"(deletion:cds_exon[53186942,53187171])"	no_errors
WDFY3	23001	hgsc.bcm.edu	36	4	85936871	85936871	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	4	85936871	85936871	T	A	SNP	WDFY3	NM_014991	human	genbank	54_36p	-1	reviewed	missense	c.2994	p.E998D	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
WDR1	9948	hgsc.bcm.edu	36	4	9726837	9726837	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	9726837	9726837	C	T	SNP	WDR1	NM_017491	human	genbank	54_36p	-1	reviewed	missense	c.136	p.D46N	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
WHSC1	7468	hgsc.bcm.edu	36	4	1872564	1872564	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	4	1872564	1872564	A	-	DEL	WHSC1	NM_001042424	human	genbank	54_36p	1	reviewed	frame_shift_del	c.385	p.T129fs	1	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[1872180,1872776])"	no_errors
WHSC1	7468	hgsc.bcm.edu	36	4	1932563	1932563	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	4	1932563	1932563	G	C	SNP	WHSC1	NM_001042424	human	genbank	54_36p	1	reviewed	missense	c.3259	p.E1087Q	1	"HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	###############################################################################################################################################################################################################################################################	-	no_errors
ZFYVE28	57732	hgsc.bcm.edu	36	4	2244812	2244812	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	2244812	2244812	C	A	SNP	ZFYVE28	NM_020972	human	genbank	54_36p	-1	provisional	missense	c.2209	p.V737L	1	NULL	"HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZNF518B	85460	hgsc.bcm.edu	36	4	10054267	10054267	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	4	10054267	10054267	A	C	SNP	ZNF518B	NM_053042	human	genbank	54_36p	-1	validated	silent	c.2784	p.A928	0	NULL	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF518B	85460	hgsc.bcm.edu	36	4	10055182	10055182	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	4	10055182	10055182	C	G	SNP	ZNF518B	NM_053042	human	genbank	54_36p	-1	validated	missense	c.1869	p.R623S	0	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ACOT12	134526	hgsc.bcm.edu	36	5	80677567	80677567	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	80677567	80677567	C	T	SNP	ACOT12	NM_130767	human	genbank	54_36p	-1	validated	nonsense	c.666	p.W222*	0	"superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT"	"superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT,superfamily_Bet v1-like,HMMPfam_START"	-	no_errors
ACSL6	23305	hgsc.bcm.edu	36	5	131336940	131336940	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	131336940	131336940	C	T	SNP	ACSL6	NM_001009185	human	genbank	54_36p	-1	validated	missense	c.1121	p.R374H	1	"superfamily_SSF56801,HMMPfam_AMP-binding"	"superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ADAMTS12	81792	hgsc.bcm.edu	36	5	33631905	33631905	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	33631905	33631905	C	T	SNP	ADAMTS12	NM_030955	human	genbank	54_36p	-1	reviewed	missense	c.2545	p.A849T	1	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS12	81792	hgsc.bcm.edu	36	5	33917038	33917038	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	33917038	33917038	C	T	SNP	ADAMTS12	NM_030955	human	genbank	54_36p	-1	reviewed	silent	c.432	p.T144	0.98	HMMPfam_Pep_M12B_propep	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS16	170690	hgsc.bcm.edu	36	5	5292978	5292978	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	5292978	5292978	C	G	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	silent	c.2463	p.S821	0.25	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
ADAMTS16	170690	hgsc.bcm.edu	36	5	5371277	5371277	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	5371277	5371277	A	G	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	missense	c.3442	p.T1148A	0.57	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS16	170690	hgsc.bcm.edu	36	5	5372202	5372202	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	5372202	5372202	A	T	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	missense	c.3626	p.K1209M	0.85	HMMPfam_PLAC	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS2	9509	hgsc.bcm.edu	36	5	178473838	178473838	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	178473838	178473838	T	C	SNP	ADAMTS2	NM_014244	human	genbank	54_36p	-1	reviewed	missense	c.3272	p.K1091R	1	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADCY2	108	hgsc.bcm.edu	36	5	7573994	7573994	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	7573994	7573994	G	A	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	silent	c.552	p.K184	1	NULL	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
ADCY2	108	hgsc.bcm.edu	36	5	7765980	7765980	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	7765980	7765980	G	T	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	missense	c.1590	p.M530I	1	HMMPfam_DUF1053	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
AGGF1	55109	hgsc.bcm.edu	36	5	76385634	76385634	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	76385634	76385634	G	T	SNP	AGGF1	NM_018046	human	genbank	54_36p	1	validated	missense	c.1556	p.G519V	1	superfamily_SMAD/FHA domain	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00443,HMMPfam_G-patch"	-	no_errors
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	36	5	139883948	139883948	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	139883948	139883948	C	G	SNP	ANKHD1-EIF4EBP3	NM_020690	human	genbank	54_36p	1	reviewed	missense	c.4431	p.N1477K	1	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1"	-	no_errors
ANXA6	309	hgsc.bcm.edu	36	5	150492274	150492274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	150492274	150492274	C	T	SNP	ANXA6	NM_001155	human	genbank	54_36p	-1	reviewed	missense	c.692	p.R231Q	0.99	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_ANX"	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_ANX"	-	no_errors
AP3S1	1176	hgsc.bcm.edu	36	5	115258697	115258699	+	In_Frame_Del	DEL	ATT	ATT	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	ATT	ATT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	115258697	115258699	ATT	-	DEL	AP3S1	NM_001284	human	genbank	54_36p	1	validated	in_frame_del	c.288_290	p.L97in_frame_del	0.982:0.980:1.000	"HMMPfam_Clat_adaptor_s,superfamily_SNARE-like"	"HMMPfam_Clat_adaptor_s,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_S"	"(deletion:cds_exon[115258683,115258754])"	no_errors
APBB3	10307	hgsc.bcm.edu	36	5	139921934	139921934	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	139921934	139921934	G	A	SNP	APBB3	NM_006051	human	genbank	54_36p	-1	reviewed	silent	c.561	p.H187	1	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID"	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID"	-	no_errors
APC	324	hgsc.bcm.edu	36	5	112182853	112182853	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	112182853	112182853	C	G	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.1225	p.L409V	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding"	-	no_errors
APC	324	hgsc.bcm.edu	36	5	112201745	112201745	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	112201745	112201745	T	C	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.2555	p.L852S	0.98	NULL	"HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat"	-	no_errors
APC	324	hgsc.bcm.edu	36	5	112203047	112203047	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	112203047	112203047	A	G	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.3857	p.E1286G	1	NULL	"HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat"	-	no_errors
APC	324	hgsc.bcm.edu	36	5	112204518	112204518	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	112204518	112204518	A	G	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	silent	c.5328	p.V1776	1	NULL	"HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat"	-	no_errors
ARHGAP26	23092	hgsc.bcm.edu	36	5	142261788	142261788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	142261788	142261788	C	T	SNP	ARHGAP26	NM_015071	human	genbank	54_36p	1	validated	silent	c.702	p.N234	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,PatternScan_IG_MHC"	-	no_errors
ARRDC3	57561	hgsc.bcm.edu	36	5	90707095	90707095	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	90707095	90707095	C	G	SNP	ARRDC3	NM_020801	human	genbank	54_36p	-1	validated	missense	c.602	p.G201A	1	"superfamily_Ig_E-set,HMMPfam_Arrestin_C"	"HMMPfam_Arrestin_N,superfamily_Ig_E-set,HMMPfam_Arrestin_C"	-	no_errors
BHMT2	23743	hgsc.bcm.edu	36	5	78414808	78414808	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	78414808	78414808	C	T	SNP	BHMT2	NM_017614	human	genbank	54_36p	1	reviewed	silent	c.636	p.P212	0.06	"superfamily_S_methyl_trans,HMMPfam_S-methyl_trans"	"superfamily_S_methyl_trans,HMMPfam_S-methyl_trans"	-	no_errors
BRD8	10902	hgsc.bcm.edu	36	5	137529604	137529604	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	137529604	137529604	T	A	SNP	BRD8	NM_139199	human	genbank	54_36p	-1	reviewed	missense	c.1090	p.I364F	1	NULL	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
C5orf22	55322	hgsc.bcm.edu	36	5	31581529	31581529	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	31581529	31581529	C	T	SNP	C5orf22	NM_018356	human	genbank	54_36p	1	validated	missense	c.1012	p.L338F	1	NULL	NULL	-	no_errors
C5orf33	133686	hgsc.bcm.edu	36	5	36255475	36255477	+	In_Frame_Del	DEL	CTT	CTT	-	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	36255475	36255477	CTT	-	DEL	C5orf33	NM_001085411	human	genbank	54_36p	-1	validated	in_frame_del	c.624_622	p.K208in_frame_del	1.000:1.000:1.000	superfamily_NAD kinase (Pfam 01513)	"superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase"	"(deletion:cds_exon[36255455,36255538])"	no_errors
C5orf33	133686	hgsc.bcm.edu	36	5	36255477	36255477	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	36255477	36255477	T	A	SNP	C5orf33	NM_001085411	human	genbank	54_36p	-1	validated	nonsense	c.622	p.K208*	1	superfamily_NAD kinase (Pfam 01513)	"HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)"	-	no_errors
C5orf35	133383	hgsc.bcm.edu	36	5	56248457	56248457	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	56248457	56248457	T	A	SNP	C5orf35	NM_153706	human	genbank	54_36p	1	predicted	missense	c.871	p.F291I	1	superfamily_SET domain	superfamily_SET domain	-	no_errors
C5orf42	65250	hgsc.bcm.edu	36	5	37156188	37156188	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	37156188	37156188	T	C	SNP	C5orf42	NM_023073	human	genbank	54_36p	-1	predicted	missense	c.5729	p.H1910R	0.01	NULL	NULL	-	no_errors
C5orf42	65250	hgsc.bcm.edu	36	5	37220792	37220792	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	37220792	37220792	G	C	SNP	C5orf42	NM_023073	human	genbank	54_36p	-1	predicted	missense	c.979	p.P327A	0	NULL	NULL	-	no_errors
C6	729	hgsc.bcm.edu	36	5	41189853	41189853	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	41189853	41189853	C	T	SNP	C6	NM_000065	human	genbank	54_36p	-1	reviewed	silent	c.2106	p.T702	0	superfamily_Complement_control_module	###############################################################################################################################################################################################################################################################	-	no_errors
CAMK4	814	hgsc.bcm.edu	36	5	110847810	110847810	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	110847810	110847810	C	T	SNP	CAMK4	NM_001744	human	genbank	54_36p	1	reviewed	missense	c.1169	p.A390V	0	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CARD6	84674	hgsc.bcm.edu	36	5	40889849	40889849	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	40889849	40889849	A	T	SNP	CARD6	NM_032587	human	genbank	54_36p	1	reviewed	silent	c.2658	p.I886	0	NULL	"superfamily_DEATH_like,HMMPfam_CARD"	-	no_errors
CCNH	902	hgsc.bcm.edu	36	5	86736503	86736503	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	86736503	86736503	C	T	SNP	CCNH	NM_001239	human	genbank	54_36p	-1	reviewed	silent	c.603	p.T201	0.76	superfamily_Cyclin_like	"PatternScan_CYCLINS,superfamily_Cyclin_like,HMMSmart_CYCLIN,HMMPfam_Cyclin_N"	-	no_errors
CCT5	22948	hgsc.bcm.edu	36	5	10315704	10315704	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	10315704	10315704	C	G	SNP	CCT5	NM_012073	human	genbank	54_36p	1	reviewed	missense	c.1291	p.L431V	0.27	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1"	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like"	-	no_errors
CDH18	1016	hgsc.bcm.edu	36	5	19757273	19757273	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	19757273	19757273	C	T	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	missense	c.583	p.A195T	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH6	1004	hgsc.bcm.edu	36	5	31358918	31358918	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	31358918	31358918	C	T	SNP	CDH6	NM_004932	human	genbank	54_36p	1	reviewed	missense	c.2119	p.R707C	0.07	HMMPfam_Cadherin_C	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH9	1007	hgsc.bcm.edu	36	5	27024186	27024186	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	27024186	27024186	G	A	SNP	CDH9	NM_016279	human	genbank	54_36p	-1	reviewed	silent	c.12	p.Y4	0	NULL	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CHSY3	337876	hgsc.bcm.edu	36	5	129548619	129548619	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	129548619	129548619	G	A	SNP	CHSY3	NM_175856	human	genbank	54_36p	1	validated	missense	c.1885	p.G629R	1	"HMMPfam_CHGN,superfamily_SSF53448"	"HMMPfam_CHGN,superfamily_SSF53448"	-	no_errors
CLPTM1L	81037	hgsc.bcm.edu	36	5	1394926	1394926	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	1394926	1394926	A	G	SNP	CLPTM1L	NM_030782	human	genbank	54_36p	-1	provisional	missense	c.313	p.Y105H	1	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors
CMYA5	202333	hgsc.bcm.edu	36	5	79070229	79070229	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	79070229	79070229	G	C	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	silent	c.9885	p.L3295	0.33	NULL	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY"	-	no_errors
CTNND2	1501	hgsc.bcm.edu	36	5	11026590	11026590	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	11026590	11026590	G	A	SNP	CTNND2	NM_001332	human	genbank	54_36p	-1	validated	missense	c.3653	p.P1218L	1	NULL	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
CTNND2	1501	hgsc.bcm.edu	36	5	11212781	11212781	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	11212781	11212781	G	T	SNP	CTNND2	NM_001332	human	genbank	54_36p	-1	validated	missense	c.2066	p.P689H	1	"HMMSmart_SM00185,superfamily_ARM repeat"	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
DDX46	9879	hgsc.bcm.edu	36	5	134127670	134127670	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	134127670	134127670	G	T	SNP	DDX46	NM_014829	human	genbank	54_36p	1	reviewed	missense	c.195	p.R65S	1	NULL	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
DHX29	54505	hgsc.bcm.edu	36	5	54615167	54615167	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	54615167	54615167	G	A	SNP	DHX29	NM_019030	human	genbank	54_36p	-1	validated	missense	c.1586	p.S529L	0.96	NULL	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
DHX29	54505	hgsc.bcm.edu	36	5	54627893	54627898	+	In_Frame_Del	DEL	CTTTGT	CTTTGT	-	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	CTTTGT	CTTTGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	54627893	54627898	CTTTGT	-	DEL	DHX29	NM_019030	human	genbank	54_36p	-1	validated	in_frame_del	c.417_412	p.TK138in_frame_del	1.000:1.000:1.000:0.992:1.000:1.000	NULL	"HMMPfam_Helicase_C,HMMSmart_HELICc,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DEAD,HMMPfam_DUF1605,HMMSmart_DEXDc,superfamily_SSF52540"	"(deletion:cds_exon[54627805,54627934])"	no_errors
DMXL1	1657	hgsc.bcm.edu	36	5	118604052	118604052	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	118604052	118604052	T	C	SNP	DMXL1	NM_005509	human	genbank	54_36p	1	validated	silent	c.8628	p.N2876	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_SUBTILASE_ASP,PatternScan_WD_REPEATS_1"	-	no_errors
DNAH5	1767	hgsc.bcm.edu	36	5	13767612	13767612	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	13767612	13767612	C	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.13027	p.D4343N	1	HMMPfam_Dynein_heavy	"HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DNAH5	1767	hgsc.bcm.edu	36	5	13807367	13807367	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	13807367	13807367	T	C	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	silent	c.10500	p.K3500	1	NULL	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAH5	1767	hgsc.bcm.edu	36	5	13816005	13816005	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	13816005	13816005	G	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.10107	p.F3369L	1	NULL	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAH5	1767	hgsc.bcm.edu	36	5	13830370	13830373	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	TGTC	TGTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	13830370	13830373	TGTC	-	DEL	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	frame_shift_del	c.9046_9043	p.D3015fs	1.000:1.000:1.000:1.000	superfamily_SSF52540	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	"(deletion:cds_exon[13830311,13830464])"	no_errors
DNAH5	1767	hgsc.bcm.edu	36	5	13883837	13883837	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	13883837	13883837	G	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.5930	p.A1977D	1	"HMMSmart_AAA,superfamily_SSF52540"	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAH5	1767	hgsc.bcm.edu	36	5	13921012	13921012	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	13921012	13921012	C	A	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.3924	p.K1308N	1	superfamily_Spectrin	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAJC18	202052	hgsc.bcm.edu	36	5	138801136	138801136	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	138801136	138801136	G	A	SNP	DNAJC18	NM_152686	human	genbank	54_36p	-1	provisional	silent	c.51	p.D17	0.99	NULL	"superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1,HMMPfam_DUF1977"	-	no_errors
DOCK2	1794	hgsc.bcm.edu	36	5	169416336	169416336	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	169416336	169416336	G	C	SNP	DOCK2	NM_004946	human	genbank	54_36p	1	validated	missense	c.4366	p.E1456Q	0.98	NULL	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Cytochrome c"	-	no_errors
DPYSL3	1809	hgsc.bcm.edu	36	5	146757506	146757506	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	146757506	146757506	C	T	SNP	DPYSL3	NM_001387	human	genbank	54_36p	-1	validated	silent	c.1377	p.L459	1	NULL	"superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556"	-	no_errors
DRD1	1812	hgsc.bcm.edu	36	5	174801396	174801396	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	174801396	174801396	A	G	SNP	DRD1	NM_000794	human	genbank	54_36p	-1	reviewed	missense	c.1313	p.I438T	1	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ERBB2IP	55914	hgsc.bcm.edu	36	5	65378114	65378114	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	65378114	65378114	G	A	SNP	ERBB2IP	NM_018695	human	genbank	54_36p	1	reviewed	missense	c.1780	p.V594I	0.99	NULL	"superfamily_SSF52058,HMMPfam_LRR_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
F2R	2149	hgsc.bcm.edu	36	5	76064569	76064569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	76064569	76064569	C	T	SNP	F2R	NM_001992	human	genbank	54_36p	1	reviewed	missense	c.763	p.H255Y	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
F2R	2149	hgsc.bcm.edu	36	5	76064685	76064685	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	76064685	76064685	C	T	SNP	F2R	NM_001992	human	genbank	54_36p	1	reviewed	silent	c.879	p.I293	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
F2R	2149	hgsc.bcm.edu	36	5	76064933	76064933	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	76064933	76064933	C	T	SNP	F2R	NM_001992	human	genbank	54_36p	1	reviewed	missense	c.1127	p.S376F	0.85	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
FAM151B	167555	hgsc.bcm.edu	36	5	79851401	79851401	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	79851401	79851401	T	G	SNP	FAM151B	NM_205548	human	genbank	54_36p	1	predicted	missense	c.451	p.L151V	1	HMMPfam_DUF2181	HMMPfam_DUF2181	-	no_errors
FAM71B	153745	hgsc.bcm.edu	36	5	156522348	156522348	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	156522348	156522348	G	A	SNP	FAM71B	NM_130899	human	genbank	54_36p	-1	validated	silent	c.1506	p.H502	0.02	NULL	NULL	-	no_errors
FAM71B	153745	hgsc.bcm.edu	36	5	156522680	156522680	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	156522680	156522680	C	A	SNP	FAM71B	NM_130899	human	genbank	54_36p	-1	validated	nonsense	c.1174	p.G392*	0	NULL	NULL	-	no_errors
FAM71B	153745	hgsc.bcm.edu	36	5	156523083	156523083	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	156523083	156523083	A	T	SNP	FAM71B	NM_130899	human	genbank	54_36p	-1	validated	silent	c.771	p.A257	0	NULL	NULL	-	no_errors
FASTKD3	79072	hgsc.bcm.edu	36	5	7920785	7920785	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	7920785	7920785	A	C	SNP	FASTKD3	NM_024091	human	genbank	54_36p	-1	validated	missense	c.412	p.C138G	0.8	NULL	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
FAT2	2196	hgsc.bcm.edu	36	5	150881655	150881655	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	150881655	150881655	C	G	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	silent	c.10692	p.L3564	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT2	2196	hgsc.bcm.edu	36	5	150903283	150903283	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	150903283	150903283	G	C	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	missense	c.7598	p.P2533R	0	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FBXO38	81545	hgsc.bcm.edu	36	5	147787404	147787404	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	147787404	147787404	A	G	SNP	FBXO38	NM_205836	human	genbank	54_36p	1	validated	missense	c.2354	p.Q785R	1	NULL	"superfamily_F-box domain,HMMPfam_F-box,superfamily_RNI-like"	-	no_errors
ARHGEF37	389337	hgsc.bcm.edu	36	5	148991932	148991932	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	148991932	148991932	G	A	SNP	FLJ41603	NM_001001669	human	genbank	54_36p	1	validated	nonsense	c.2013	p.W671*	1	superfamily_SH3	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_BAR,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,HMMPfam_SH3_1"	-	no_errors
FYB	2533	hgsc.bcm.edu	36	5	39238125	39238125	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	39238125	39238125	C	G	SNP	FYB	NM_001465	human	genbank	54_36p	-1	validated	missense	c.695	p.R232T	0.01	NULL	"PatternScan_XYLOSE_ISOMERASE_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
GABRA1	2554	hgsc.bcm.edu	36	5	161232726	161232726	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	161232726	161232726	G	A	SNP	GABRA1	NM_000806	human	genbank	54_36p	1	reviewed	missense	c.281	p.R94H	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRA6	2559	hgsc.bcm.edu	36	5	161049331	161049331	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	161049331	161049331	C	T	SNP	GABRA6	NM_000811	human	genbank	54_36p	1	reviewed	missense	c.641	p.T214I	1	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
GABRA6	2559	hgsc.bcm.edu	36	5	161051681	161051681	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	161051681	161051681	C	T	SNP	GABRA6	NM_000811	human	genbank	54_36p	1	reviewed	missense	c.983	p.T328I	1	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GABRA6	2559	hgsc.bcm.edu	36	5	161061315	161061315	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	161061315	161061315	T	C	SNP	GABRA6	NM_000811	human	genbank	54_36p	1	reviewed	silent	c.1320	p.Y440	1	superfamily_Neurotransmitter-gated ion-channel transmembrane pore	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GPR98	84059	hgsc.bcm.edu	36	5	89985251	89985251	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	89985251	89985251	T	C	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	silent	c.4104	p.N1368	1	superfamily_Concanavalin A-like lectins/glucanases	"HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS"	-	no_errors
GRIA1	2890	hgsc.bcm.edu	36	5	153170856	153170856	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	153170856	153170856	G	T	SNP	GRIA1	NM_000827	human	genbank	54_36p	1	reviewed	missense	c.2599	p.A867S	1	NULL	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
H2AFY	9555	hgsc.bcm.edu	36	5	134706992	134706992	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	134706992	134706992	G	T	SNP	H2AFY	NM_138610	human	genbank	54_36p	-1	reviewed	silent	c.810	p.A270	1	"superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro"	"HMMSmart_SM00414,superfamily_Histone-fold,HMMPfam_Histone,superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro"	-	no_errors
HAPLN1	1404	hgsc.bcm.edu	36	5	82973357	82973357	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	82973357	82973357	C	T	SNP	HAPLN1	NM_001884	human	genbank	54_36p	-1	validated	missense	c.779	p.R260H	0.82	"HMMSmart_SM00445,HMMPfam_Xlink"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,HMMSmart_SM00406,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1"	-	no_errors
HAVCR1	26762	hgsc.bcm.edu	36	5	156412146	156412147	+	In_Frame_Ins	INS	-	-	GTT	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	156412146	156412147	-	GTT	INS	HAVCR1	NM_001099414	human	genbank	54_36p	-1	validated	in_frame_ins	c.477_476	p.161in_frame_insT	0.005:0.017	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,PatternScan_IG_MHC"	-	no_errors
HCN1	348980	hgsc.bcm.edu	36	5	45681093	45681093	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	45681093	45681093	C	A	SNP	HCN1	NM_021072	human	genbank	54_36p	-1	validated	missense	c.800	p.R267L	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1"	-	no_errors
HEATR7B2	133558	hgsc.bcm.edu	36	5	41097435	41097435	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	41097435	41097435	G	T	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	silent	c.609	p.P203	0	NULL	superfamily_ARM repeat	-	no_errors
IL7R	3575	hgsc.bcm.edu	36	5	35912067	35912067	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	35912067	35912067	A	T	SNP	IL7R	NM_002185	human	genbank	54_36p	1	reviewed	missense	c.1102	p.T368S	0	NULL	"superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
JAKMIP2	9832	hgsc.bcm.edu	36	5	146977681	146977681	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	146977681	146977681	G	A	SNP	JAKMIP2	NM_014790	human	genbank	54_36p	-1	provisional	nonsense	c.2332	p.Q778*	1	NULL	NULL	-	no_errors
JAKMIP2	9832	hgsc.bcm.edu	36	5	147020721	147020721	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	147020721	147020721	G	A	SNP	JAKMIP2	NM_014790	human	genbank	54_36p	-1	provisional	missense	c.610	p.R204W	1	NULL	NULL	-	no_errors
KDM3B	51780	hgsc.bcm.edu	36	5	137736317	137736317	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	137736317	137736317	A	G	SNP	JMJD1B	NM_016604	human	genbank	54_36p	1	validated	missense	c.248	p.H83R	1	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
KDM3B	51780	hgsc.bcm.edu	36	5	137789008	137789008	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	137789008	137789008	G	C	SNP	JMJD1B	NM_016604	human	genbank	54_36p	1	validated	missense	c.4249	p.V1417L	1	superfamily_Clavaminate synthase-like	"HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like"	-	no_errors
KIF2A	3796	hgsc.bcm.edu	36	5	61712708	61712708	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	61712708	61712708	A	G	SNP	KIF2A	NM_001098511	human	genbank	54_36p	1	validated	missense	c.2020	p.I674V	1	NULL	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
LARP1	23367	hgsc.bcm.edu	36	5	154154929	154154929	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	154154929	154154929	G	A	SNP	LARP1	NM_033551	human	genbank	54_36p	1	validated	missense	c.1234	p.E412K	1	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715,HMMPfam_La,PatternScan_CYTOCHROME_B5_1,HMMSmart_SM00684"	-	no_errors
LARP1	23367	hgsc.bcm.edu	36	5	154162068	154162069	+	In_Frame_Ins	INS	-	-	GAT	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	154162068	154162069	-	GAT	INS	LARP1	NM_033551	human	genbank	54_36p	1	validated	in_frame_ins	c.2025_2026	p.675in_frame_insD	1.000:1.000	NULL	"HMMSmart_SM00684,HMMPfam_La,HMMSmart_SM00715,PatternScan_CYTOCHROME_B5_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
LPCAT1	79888	hgsc.bcm.edu	36	5	1542918	1542919	+	Frame_Shift_Ins	INS	-	-	CC	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	1542918	1542919	-	CC	INS	LPCAT1	NM_024830	human	genbank	54_36p	-1	validated	frame_shift_ins	c.549_548	p.R184fs	0.965:0.996	"superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC"	"PatternScan_EF_HAND_1,superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF47473,HMMSmart_EFh"	-	no_errors
MAML1	9794	hgsc.bcm.edu	36	5	179133521	179133521	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	179133521	179133521	C	A	SNP	MAML1	NM_014757	human	genbank	54_36p	1	reviewed	silent	c.2088	p.P696	0.98	NULL	HMMPfam_MamL-1	-	no_errors
MAN2A1	4124	hgsc.bcm.edu	36	5	109218791	109218791	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	109218791	109218791	T	A	SNP	MAN2A1	NM_002372	human	genbank	54_36p	1	reviewed	missense	c.3028	p.S1010T	0.08	"superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
MAPK9	5601	hgsc.bcm.edu	36	5	179624429	179624429	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	179624429	179624429	T	C	SNP	MAPK9	NM_002752	human	genbank	54_36p	-1	reviewed	missense	c.269	p.N90S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MCCC2	64087	hgsc.bcm.edu	36	5	70936053	70936053	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	70936053	70936053	T	C	SNP	MCCC2	ENST00000340941	human	ensembl	54_36p	1	known	splice_site	c.624+2	e6+2	1	-	-	-	mismatch_between_exon_seq_and_reference
MEF2C	4208	hgsc.bcm.edu	36	5	88054305	88054305	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	88054305	88054305	C	A	SNP	MEF2C	NM_002397	human	genbank	54_36p	-1	validated	missense	c.1294	p.D432Y	1	NULL	"HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF"	-	no_errors
MEGF10	84466	hgsc.bcm.edu	36	5	126783741	126783741	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	126783741	126783741	C	T	SNP	MEGF10	NM_032446	human	genbank	54_36p	1	validated	silent	c.1533	p.D511	0.99	"HMMSmart_SM00181,HMMSmart_SM00180,superfamily_EGF/Laminin"	"HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00180,HMMPfam_Laminin_EGF,HMMPfam_EGF_2,superfamily_Plant inhibitors of proteinases and amylases"	-	no_errors
MTMR12	54545	hgsc.bcm.edu	36	5	32299044	32299044	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	32299044	32299044	C	A	SNP	MTMR12	NM_001040446	human	genbank	54_36p	-1	reviewed	silent	c.645	p.L215	1	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related"	-	no_errors
MYOT	9499	hgsc.bcm.edu	36	5	137241202	137241202	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	137241202	137241202	A	T	SNP	MYOT	NM_006790	human	genbank	54_36p	1	reviewed	missense	c.626	p.D209V	0.86	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET"	-	no_errors
NIPBL	25836	hgsc.bcm.edu	36	5	37011811	37011811	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	37011811	37011811	A	G	SNP	NIPBL	NM_133433	human	genbank	54_36p	1	reviewed	missense	c.1045	p.S349G	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NIPBL	25836	hgsc.bcm.edu	36	5	37055186	37055186	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	37055186	37055186	A	G	SNP	NIPBL	NM_133433	human	genbank	54_36p	1	reviewed	missense	c.4937	p.D1646G	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NMUR2	56923	hgsc.bcm.edu	36	5	151764254	151764254	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	151764254	151764254	G	A	SNP	NMUR2	NM_020167	human	genbank	54_36p	-1	reviewed	missense	c.614	p.T205M	0.97	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
NPR3	4883	hgsc.bcm.edu	36	5	32820708	32820708	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	32820708	32820708	A	T	SNP	NPR3	NM_000908	human	genbank	54_36p	1	validated	missense	c.1473	p.L491F	1	NULL	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_ANF_RECEPTORS"	-	no_errors
NR2F1	7025	hgsc.bcm.edu	36	5	92946865	92946865	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	92946865	92946865	A	G	SNP	NR2F1	NM_005654	human	genbank	54_36p	1	provisional	missense	c.380	p.N127S	1	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716"	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMPfam_zf-C4_C,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
NR3C1	2908	hgsc.bcm.edu	36	5	142658506	142658506	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	142658506	142658506	C	G	SNP	NR3C1	NM_001024094	human	genbank	54_36p	-1	reviewed	missense	c.1815	p.M605I	1	"superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	"HMMPfam_GCR,HMMSmart_ZnF_C4,superfamily_SSF57716,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
NRG2	9542	hgsc.bcm.edu	36	5	139225327	139225327	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	139225327	139225327	G	T	SNP	NRG2	NM_013982	human	genbank	54_36p	-1	reviewed	missense	c.1180	p.P394T	1	superfamily_SSF57196	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Neuregulin"	-	no_errors
ODZ2	57451	hgsc.bcm.edu	36	5	167622010	167622010	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	167622010	167622010	A	-	DEL	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	frame_shift_del	c.7939	p.N2647fs	1	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[167621632,167622393])"	no_errors
OSMR	9180	hgsc.bcm.edu	36	5	38917468	38917468	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	38917468	38917468	C	G	SNP	OSMR	NM_003999	human	genbank	54_36p	1	reviewed	missense	c.263	p.T88S	0.89	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
OXCT1	5019	hgsc.bcm.edu	36	5	41798052	41798052	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	41798052	41798052	A	T	SNP	OXCT1	NM_000436	human	genbank	54_36p	-1	reviewed	missense	c.1256	p.M419K	1	"superfamily_SSF100950,HMMPfam_CoA_trans"	"superfamily_SSF100950,HMMPfam_CoA_trans,PatternScan_COA_TRANSF_1,PatternScan_COA_TRANSF_2"	-	no_errors
OXCT1	5019	hgsc.bcm.edu	36	5	41898503	41898503	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	41898503	41898503	C	A	SNP	OXCT1	NM_000436	human	genbank	54_36p	-1	reviewed	missense	c.185	p.G62V	1	"PatternScan_COA_TRANSF_1,HMMPfam_CoA_trans,superfamily_SSF100950"	"PatternScan_COA_TRANSF_1,PatternScan_COA_TRANSF_2,HMMPfam_CoA_trans,superfamily_SSF100950"	-	no_errors
PCDH12	51294	hgsc.bcm.edu	36	5	141317324	141317324	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	141317324	141317324	C	G	SNP	PCDH12	NM_016580	human	genbank	54_36p	-1	reviewed	missense	c.277	p.D93H	1	"superfamily_Cadherin,HMMPfam_Cadherin_2,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
CDHR2	54825	hgsc.bcm.edu	36	5	175928408	175928408	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	175928408	175928408	G	T	SNP	PCDH24	NM_017675	human	genbank	54_36p	1	reviewed	missense	c.248	p.S83I	0	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1"	-	no_errors
PCDHAC1	56135	hgsc.bcm.edu	36	5	140286718	140286718	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	140286718	140286718	G	A	SNP	PCDHAC1	NM_018898	human	genbank	54_36p	1	reviewed	silent	c.57	p.A19	0.01	superfamily_Cadherin-like	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB15	56121	hgsc.bcm.edu	36	5	140605479	140605481	+	In_Frame_Del	DEL	ATG	ATG	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	ATG	ATG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	140605479	140605481	ATG	-	DEL	PCDHB15	NM_018935	human	genbank	54_36p	1	reviewed	in_frame_del	c.149_151	p.D51in_frame_del	0.982:0.984:1.000	"HMMPfam_Cadherin_2,superfamily_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	"(deletion:cds_exon[140605331,140607694])"	no_errors
PCDHB15	56121	hgsc.bcm.edu	36	5	140606488	140606488	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	140606488	140606488	G	A	SNP	PCDHB15	NM_018935	human	genbank	54_36p	1	reviewed	silent	c.1158	p.Q386	0	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB5	26167	hgsc.bcm.edu	36	5	140497565	140497565	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	140497565	140497565	C	T	SNP	PCDHB5	NM_015669	human	genbank	54_36p	1	reviewed	missense	c.2365	p.R789W	0	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDHGB4	8641	hgsc.bcm.edu	36	5	140748197	140748197	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	140748197	140748197	G	-	DEL	PCDHGB4	NM_003736	human	genbank	54_36p	1	reviewed	frame_shift_del	c.562	p.G188fs	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	"(deletion:cds_exon[140747636,140750032])"	no_errors
PCDHGC4	56098	hgsc.bcm.edu	36	5	140846674	140846674	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	140846674	140846674	G	C	SNP	PCDHGC4	NM_018928	human	genbank	54_36p	1	reviewed	missense	c.1750	p.V584L	0.36	superfamily_Cadherin-like	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCSK1	5122	hgsc.bcm.edu	36	5	95754502	95754502	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	95754502	95754502	G	A	SNP	PCSK1	NM_000439	human	genbank	54_36p	-1	reviewed	silent	c.2221	p.L741	1	NULL	"superfamily_Prot_inh_propept,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein"	-	no_errors
PCSK1	5122	hgsc.bcm.edu	36	5	95787360	95787360	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	95787360	95787360	C	G	SNP	PCSK1	NM_000439	human	genbank	54_36p	-1	reviewed	missense	c.316	p.E106Q	1	NULL	"HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53,HMMPfam_P_proprotein,superfamily_Gal_bind_like,superfamily_Prot_inh_propept"	-	no_errors
PDE8B	8622	hgsc.bcm.edu	36	5	76657161	76657161	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	76657161	76657161	C	A	SNP	PDE8B	NM_003719	human	genbank	54_36p	1	validated	silent	c.441	p.G147	1	HMMPfam_Response_reg	"HMMPfam_PDE8,HMMPfam_Response_reg,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDGFRB	5159	hgsc.bcm.edu	36	5	149492605	149492605	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	149492605	149492605	T	G	SNP	PDGFRB	NM_002609	human	genbank	54_36p	-1	reviewed	missense	c.1028	p.Y343S	1	"superfamily_SSF48726,HMMSmart_IG"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
PDZD2	23037	hgsc.bcm.edu	36	5	32125880	32125880	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	32125880	32125880	T	-	DEL	PDZD2	NM_178140	human	genbank	54_36p	1	reviewed	frame_shift_del	c.6569	p.L2190fs	0	NULL	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP"	"(deletion:cds_exon[32122994,32127038])"	no_errors
PIK3R1	5295	hgsc.bcm.edu	36	5	67623842	67623842	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	67623842	67623842	G	C	SNP	PIK3R1	NM_181523	human	genbank	54_36p	1	reviewed	splice_site	c.917-1	e7-1	1	-	-	-	no_errors
PPAP2A	8611	hgsc.bcm.edu	36	5	54757623	54757623	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	54757623	54757623	A	C	SNP	PPAP2A	NM_176895	human	genbank	54_36p	-1	reviewed	missense	c.554	p.L185R	1	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	-	no_errors
PPWD1	23398	hgsc.bcm.edu	36	5	64908589	64908589	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	64908589	64908589	C	G	SNP	PPWD1	NM_015342	human	genbank	54_36p	1	validated	missense	c.1097	p.T366S	1	superfamily_WD40_like	"PatternScan_CSA_PPIASE_1,PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase"	-	no_errors
PRR16	51334	hgsc.bcm.edu	36	5	120049708	120049708	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	120049708	120049708	C	A	SNP	PRR16	NM_016644	human	genbank	54_36p	1	provisional	missense	c.251	p.P84Q	0.95	NULL	NULL	-	no_errors
RANBP3L	202151	hgsc.bcm.edu	36	5	36337238	36337238	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	36337238	36337238	G	A	SNP	RANBP3L	NM_145000	human	genbank	54_36p	-1	provisional	missense	c.38	p.P13L	0	NULL	"superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1"	-	no_errors
RAPGEF6	51735	hgsc.bcm.edu	36	5	130794642	130794642	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	130794642	130794642	T	G	SNP	RAPGEF6	NM_016340	human	genbank	54_36p	-1	provisional	missense	c.4274	p.K1425T	0.99	NULL	"superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00147,HMMPfam_RasGEF"	-	no_errors
RAPGEF6	51735	hgsc.bcm.edu	36	5	130843272	130843272	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	130843272	130843272	T	G	SNP	RAPGEF6	NM_016340	human	genbank	54_36p	-1	provisional	missense	c.1914	p.K638N	1	superfamily_Ras GEF	"HMMPfam_RA,HMMSmart_SM00314,HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_cAMP-binding domain-like"	-	no_errors
RASGRF2	5924	hgsc.bcm.edu	36	5	80445321	80445321	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	80445321	80445321	C	G	SNP	RASGRF2	NM_006909	human	genbank	54_36p	1	validated	missense	c.2296	p.P766A	0.6	"superfamily_Ras GEF,HMMPfam_RasGEF_N"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
SDHA	6389	hgsc.bcm.edu	36	5	309484	309485	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	309484	309485	TT	-	DEL	SDHA	NM_004168	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1944_1945	p.L649fs	0.998:0.999	"superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain,HMMPfam_Succ_DH_flav_C"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[309449,309535])"	no_errors
SEMA5A	9037	hgsc.bcm.edu	36	5	9119612	9119612	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	9119612	9119612	C	T	SNP	SEMA5A	NM_003966	human	genbank	54_36p	-1	validated	silent	c.2220	p.P740	0	NULL	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1"	-	no_errors
SH3TC2	79628	hgsc.bcm.edu	36	5	148364640	148364640	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	148364640	148364640	C	T	SNP	SH3TC2	NM_024577	human	genbank	54_36p	-1	reviewed	missense	c.3694	p.E1232K	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_SH3_1,HMMSmart_SM00326,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
SLC30A5	64924	hgsc.bcm.edu	36	5	68448173	68448173	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	68448173	68448173	G	T	SNP	SLC30A5	NM_022902	human	genbank	54_36p	1	provisional	missense	c.1269	p.L423F	1	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
SLC34A1	6569	hgsc.bcm.edu	36	5	176747743	176747743	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	176747743	176747743	G	A	SNP	SLC34A1	NM_003052	human	genbank	54_36p	1	validated	missense	c.787	p.A263T	1	HMMPfam_Na_Pi_cotrans	HMMPfam_Na_Pi_cotrans	-	no_errors
SLC36A3	285641	hgsc.bcm.edu	36	5	150637296	150637296	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	150637296	150637296	C	G	SNP	SLC36A3	NM_181774	human	genbank	54_36p	-1	validated	missense	c.1264	p.E422Q	0.97	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC6A3	6531	hgsc.bcm.edu	36	5	1454057	1454057	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	1454057	1454057	C	T	SNP	SLC6A3	NM_001044	human	genbank	54_36p	-1	validated	silent	c.1812	p.V604	0.99	NULL	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLCO4C1	353189	hgsc.bcm.edu	36	5	101613318	101613318	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	101613318	101613318	C	T	SNP	SLCO4C1	NM_180991	human	genbank	54_36p	-1	validated	missense	c.1543	p.V515I	0.27	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMPfam_Kazal_2"	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMPfam_Kazal_2"	-	no_errors
SLCO6A1	133482	hgsc.bcm.edu	36	5	101737011	101737011	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	101737011	101737011	G	T	SNP	SLCO6A1	NM_173488	human	genbank	54_36p	-1	validated	missense	c.2104	p.P702T	0	NULL	"HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
SLIT3	6586	hgsc.bcm.edu	36	5	168043640	168043640	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	168043640	168043640	C	A	SNP	SLIT3	NM_003062	human	genbank	54_36p	-1	validated	nonsense	c.3595	p.G1199*	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
SLU7	10569	hgsc.bcm.edu	36	5	159773958	159773958	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	159773958	159773958	T	C	SNP	SLU7	NM_006425	human	genbank	54_36p	-1	reviewed	silent	c.270	p.E90	1	NULL	NULL	-	no_errors
SNCAIP	9627	hgsc.bcm.edu	36	5	121814172	121814172	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	121814172	121814172	A	G	SNP	SNCAIP	NM_005460	human	genbank	54_36p	1	reviewed	silent	c.1731	p.P577	0.61	NULL	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	-	no_errors
SNCB	6620	hgsc.bcm.edu	36	5	175980868	175980868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	175980868	175980868	C	T	SNP	SNCB	NM_001001502	human	genbank	54_36p	-1	reviewed	missense	c.325	p.E109K	1	HMMPfam_Synuclein	HMMPfam_Synuclein	-	no_errors
SOX30	11063	hgsc.bcm.edu	36	5	156986010	156986010	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	156986010	156986010	C	T	SNP	SOX30	NM_178424	human	genbank	54_36p	-1	reviewed	silent	c.2178	p.P726	0.07	NULL	"superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
SPEF2	79925	hgsc.bcm.edu	36	5	35680326	35680326	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	35680326	35680326	A	G	SNP	SPEF2	NM_024867	human	genbank	54_36p	1	validated	missense	c.527	p.E176G	0.48	NULL	"HMMPfam_DUF1042,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_hATC"	-	no_errors
SPINK5	11005	hgsc.bcm.edu	36	5	147480068	147480068	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	147480068	147480068	A	-	DEL	SPINK5	NM_006846	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2459	p.K823fs	1	"HMMSmart_KAZAL,HMMPfam_Kazal_2"	"superfamily_SSF100895,HMMPfam_Kazal_2,HMMSmart_KAZAL,PatternScan_KAZAL,HMMPfam_Kazal_1"	"(deletion:cds_exon[147480051,147480147])"	no_errors
STK10	6793	hgsc.bcm.edu	36	5	171424401	171424401	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	171424401	171424401	C	A	SNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	missense	c.2010	p.K670N	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
STK10	6793	hgsc.bcm.edu	36	5	171453345	171453345	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	171453345	171453345	C	-	DEL	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1230	p.R411fs	0.04	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"(deletion:cds_exon[171453021,171453569])"	no_errors
TARS	6897	hgsc.bcm.edu	36	5	33496903	33496903	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	33496903	33496903	C	G	SNP	TARS	NM_152295	human	genbank	54_36p	1	reviewed	missense	c.1390	p.H464D	1	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b"	"HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
TIMD4	91937	hgsc.bcm.edu	36	5	156285901	156285901	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	156285901	156285901	G	T	SNP	TIMD4	NM_138379	human	genbank	54_36p	-1	provisional	missense	c.845	p.A282E	0	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
TIMD4	91937	hgsc.bcm.edu	36	5	156314073	156314073	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	156314073	156314073	A	T	SNP	TIMD4	NM_138379	human	genbank	54_36p	-1	provisional	missense	c.331	p.C111S	1	"HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
TRIM23	373	hgsc.bcm.edu	36	5	64940959	64940959	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	64940959	64940959	T	C	SNP	TRIM23	NM_001656	human	genbank	54_36p	-1	reviewed	missense	c.911	p.E304G	1	HMMSmart_SM00502	###############################################################################################################################################################################################################################################################	-	no_errors
TRIM36	55521	hgsc.bcm.edu	36	5	114510804	114510804	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	114510804	114510804	G	A	SNP	TRIM36	NM_018700	human	genbank	54_36p	-1	reviewed	missense	c.485	p.P162L	1	superfamily_RING/U-box	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
TRIM36	55521	hgsc.bcm.edu	36	5	114510861	114510861	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	114510861	114510861	T	A	SNP	TRIM36	NM_018700	human	genbank	54_36p	-1	reviewed	missense	c.428	p.E143V	1	superfamily_RING/U-box	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_fn3,superfamily_Fibronectin type III,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box"	-	no_errors
TRIO	7204	hgsc.bcm.edu	36	5	14535753	14535753	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	14535753	14535753	T	A	SNP	TRIO	NM_007118	human	genbank	54_36p	1	validated	missense	c.6528	p.D2176E	0.9	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIP13	9319	hgsc.bcm.edu	36	5	967604	967604	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	967604	967604	C	T	SNP	TRIP13	NM_004237	human	genbank	54_36p	1	provisional	nonsense	c.1045	p.Q349*	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
TTC33	23548	hgsc.bcm.edu	36	5	40752165	40752165	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	40752165	40752165	C	A	SNP	TTC33	NM_012382	human	genbank	54_36p	-1	validated	nonsense	c.628	p.E210*	1	NULL	"HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
TXNDC15	79770	hgsc.bcm.edu	36	5	134238105	134238105	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	134238105	134238105	T	-	DEL	TXNDC15	NM_024715	human	genbank	54_36p	1	validated	frame_shift_del	c.89	p.V30fs	0.98	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	"(deletion:cds_exon[134238017,134238119])"	no_errors
TXNDC15	79770	hgsc.bcm.edu	36	5	134257108	134257108	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	134257108	134257108	G	A	SNP	TXNDC15	NM_024715	human	genbank	54_36p	1	validated	missense	c.619	p.G207S	0.99	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	-	no_errors
UBLCP1	134510	hgsc.bcm.edu	36	5	158637839	158637839	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	5	158637839	158637839	G	A	SNP	UBLCP1	NM_145049	human	genbank	54_36p	1	validated	missense	c.700	p.V234I	1	"superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577"	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577"	-	no_errors
UGT3A2	167127	hgsc.bcm.edu	36	5	36071585	36071585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	36071585	36071585	C	T	SNP	UGT3A2	NM_174914	human	genbank	54_36p	-1	provisional	missense	c.1544	p.R515H	0.18	HMMPfam_UDPGT	"superfamily_SSF53756,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UIMC1	51720	hgsc.bcm.edu	36	5	176328333	176328333	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	5	176328333	176328333	A	C	SNP	UIMC1	NM_016290	human	genbank	54_36p	-1	provisional	missense	c.1029	p.S343R	0.99	NULL	"HMMPfam_UIM,HMMSmart_SM00726"	-	no_errors
VCAN	1462	hgsc.bcm.edu	36	5	82852061	82852061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	5	82852061	82852061	C	T	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	missense	c.2180	p.S727F	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
WDR70	55100	hgsc.bcm.edu	36	5	37738825	37738825	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	5	37738825	37738825	G	C	SNP	WDR70	NM_018034	human	genbank	54_36p	1	provisional	missense	c.1295	p.S432T	1	superfamily_WD40_like	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ZCCHC9	84240	hgsc.bcm.edu	36	5	80644194	80644194	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	5	80644194	80644194	C	T	SNP	ZCCHC9	NM_032280	human	genbank	54_36p	1	validated	missense	c.773	p.P258L	0.32	NULL	"superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
ZNF354A	6940	hgsc.bcm.edu	36	5	178072848	178072848	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	5	178072848	178072848	G	A	SNP	ZNF354A	NM_005649	human	genbank	54_36p	-1	validated	missense	c.637	p.R213C	1	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
AARS2	57505	hgsc.bcm.edu	36	6	44387954	44387954	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	44387954	44387954	C	T	SNP	AARS2	NM_020745	human	genbank	54_36p	-1	validated	missense	c.268	p.V90M	0.87	"superfamily_SSF55681,HMMPfam_tRNA-synt_2c"	"superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD"	-	no_errors
ABCF1	23	hgsc.bcm.edu	36	6	30661705	30661705	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	30661705	30661705	G	C	SNP	ABCF1	NM_001025091	human	genbank	54_36p	1	reviewed	missense	c.1671	p.K557N	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCF1	23	hgsc.bcm.edu	36	6	30666446	30666446	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	30666446	30666446	C	T	SNP	ABCF1	NM_001025091	human	genbank	54_36p	1	reviewed	missense	c.2527	p.P843S	0.96	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABT1	29777	hgsc.bcm.edu	36	6	26706233	26706233	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	26706233	26706233	C	G	SNP	ABT1	NM_013375	human	genbank	54_36p	1	reviewed	silent	c.354	p.A118	1	superfamily_SSF54928	superfamily_SSF54928	-	no_errors
ACAT2	39	hgsc.bcm.edu	36	6	160103950	160103950	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	160103950	160103950	A	G	SNP	ACAT2	NM_005891	human	genbank	54_36p	1	reviewed	missense	c.65	p.N22S	1	"HMMPfam_Thiolase_N,superfamily_Thiolase-like"	"PatternScan_THIOLASE_1,HMMPfam_Thiolase_N,superfamily_Thiolase-like,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3"	-	no_errors
AKAP12	9590	hgsc.bcm.edu	36	6	151668733	151668733	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	151668733	151668733	T	G	SNP	AKAP12	NM_005100	human	genbank	54_36p	1	reviewed	splice_site	c.319+2	e2+2	0.81	-	-	-	no_errors
ARID1B	57492	hgsc.bcm.edu	36	6	157569688	157569689	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	157569688	157569689	-	T	INS	ARID1B	NM_017519	human	genbank	54_36p	1	validated	frame_shift_ins	c.5667_5668	p.Q1889fs	0.997:1.000	NULL	"superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
ARID1B	57492	hgsc.bcm.edu	36	6	157569693	157569693	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	157569693	157569693	A	C	SNP	ARID1B	NM_017519	human	genbank	54_36p	1	validated	missense	c.5672	p.Q1891P	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like"	-	no_errors
ASCC3	10973	hgsc.bcm.edu	36	6	101072612	101072612	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	101072612	101072612	T	C	SNP	ASCC3	NM_006828	human	genbank	54_36p	-1	validated	missense	c.5903	p.E1968G	0.99	"HMMSmart_SEC63,HMMPfam_Sec63"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_AAA,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMSmart_SEC63,HMMPfam_Sec63"	-	no_errors
B3GAT2	135152	hgsc.bcm.edu	36	6	71660655	71660655	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	71660655	71660655	C	G	SNP	B3GAT2	NM_080742	human	genbank	54_36p	-1	reviewed	silent	c.633	p.L211	0.97	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_43"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_43"	-	no_errors
BACH2	60468	hgsc.bcm.edu	36	6	90698874	90698874	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	90698874	90698874	C	A	SNP	BACH2	NM_021813	human	genbank	54_36p	-1	validated	nonsense	c.2500	p.E834*	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	-	no_errors
BACH2	60468	hgsc.bcm.edu	36	6	90775173	90775173	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	90775173	90775173	C	T	SNP	BACH2	NM_021813	human	genbank	54_36p	-1	validated	missense	c.112	p.D38N	1	"HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB"	"HMMSmart_BTB,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,superfamily_BTB/POZ_fold,HMMPfam_bZIP_1,HMMPfam_BTB"	-	no_errors
BAI3	577	hgsc.bcm.edu	36	6	69722751	69722751	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	69722751	69722751	G	A	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.1310	p.C437Y	1	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BAI3	577	hgsc.bcm.edu	36	6	69760463	69760463	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	69760463	69760463	C	A	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.1817	p.T606N	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BAI3	577	hgsc.bcm.edu	36	6	69760509	69760509	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	69760509	69760509	G	T	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.1863	p.E621D	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BAT3	7917	hgsc.bcm.edu	36	6	31722165	31722165	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	31722165	31722165	C	T	SNP	BAT3	NM_004639	human	genbank	54_36p	-1	reviewed	silent	c.921	p.T307	0.99	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	-	no_errors
BAT5	7920	hgsc.bcm.edu	36	6	31777860	31777860	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	31777860	31777860	C	T	SNP	BAT5	NM_021160	human	genbank	54_36p	-1	reviewed	silent	c.159	p.L53	1	NULL	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	-	no_errors
BEND3	57673	hgsc.bcm.edu	36	6	107496760	107496760	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	107496760	107496760	C	T	SNP	BEND3	NM_001080450	human	genbank	54_36p	-1	provisional	silent	c.2328	p.R776	0.71	HMMPfam_BEN	HMMPfam_BEN	-	no_errors
BMP5	653	hgsc.bcm.edu	36	6	55847362	55847362	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	55847362	55847362	G	T	SNP	BMP5	NM_021073	human	genbank	54_36p	-1	reviewed	silent	c.261	p.A87	1	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
BRD2	6046	hgsc.bcm.edu	36	6	33051792	33051792	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	33051792	33051792	G	A	SNP	BRD2	NM_005104	human	genbank	54_36p	1	reviewed	missense	c.478	p.D160N	1	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
BTN2A1	11120	hgsc.bcm.edu	36	6	26571485	26571486	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	26571485	26571486	CC	-	DEL	BTN2A1	NM_007049	human	genbank	54_36p	1	reviewed	frame_shift_del	c.465_466	p.H156fs	0.000:0.000	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	"(deletion:cds_exon[26571451,26571732])"	no_errors
RPF2	84154	hgsc.bcm.edu	36	6	111427607	111427607	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	111427607	111427607	G	T	SNP	BXDC1	NM_032194	human	genbank	54_36p	1	validated	missense	c.317	p.G106V	1	HMMPfam_Brix	HMMPfam_Brix	-	no_errors
C4A	720	hgsc.bcm.edu	36	6	32104549	32104549	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	32104549	32104549	A	C	SNP	C4A	NM_007293	human	genbank	54_36p	1	reviewed	missense	c.3332	p.Q1111P	0.91	"superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp"	###############################################################################################################################################################################################################################################################	-	no_errors
C6orf132	647024	hgsc.bcm.edu	36	6	42218142	42218142	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	42218142	42218142	C	-	DEL	C6orf132	XM_930012	human	genbank	54_36p	-1	model	frame_shift_del	c.19	p.V7fs	0.97	NULL	NULL	"(deletion:cds_exon[42218016,42218160])"	no_errors
ATAT1	79969	hgsc.bcm.edu	36	6	30717948	30717948	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	30717948	30717948	G	A	SNP	C6orf134	NM_024909	human	genbank	54_36p	1	validated	silent	c.669	p.L223	1	NULL	HMMPfam_DUF738	-	no_errors
C6orf142	90523	hgsc.bcm.edu	36	6	54174992	54174992	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	54174992	54174992	T	C	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	splice_site	c.1113+2	e10+2	1	-	-	-	no_errors
RRP36	88745	hgsc.bcm.edu	36	6	43101003	43101003	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	43101003	43101003	C	G	SNP	C6orf153	NM_033112	human	genbank	54_36p	1	predicted	missense	c.303	p.I101M	0.91	HMMPfam_DUF947	HMMPfam_DUF947	-	no_errors
C6orf167	253714	hgsc.bcm.edu	36	6	97836995	97836995	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	97836995	97836995	G	A	SNP	C6orf167	NM_198468	human	genbank	54_36p	-1	predicted	missense	c.80	p.P27L	1	NULL	NULL	-	no_errors
C6orf168	84553	hgsc.bcm.edu	36	6	99846374	99846374	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	99846374	99846374	G	A	SNP	C6orf168	NM_032511	human	genbank	54_36p	-1	validated	silent	c.867	p.D289	1	"HMMPfam_Tom37,superfamily_Glutathione S-transferase (GST) C-terminal domain"	"superfamily_Thioredoxin-like,HMMPfam_Tom37,superfamily_Glutathione S-transferase (GST) C-terminal domain"	-	no_errors
C6orf27	80737	hgsc.bcm.edu	36	6	31841522	31841522	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	31841522	31841522	C	T	SNP	C6orf27	NM_025258	human	genbank	54_36p	-1	validated	missense	c.2504	p.R835Q	0.71	NULL	"HMMSmart_VWA,superfamily_SSF53300"	-	no_errors
C6orf81	221481	hgsc.bcm.edu	36	6	35824353	35824353	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	35824353	35824353	G	T	SNP	C6orf81	NM_145028	human	genbank	54_36p	1	predicted	missense	c.832	p.V278L	0.65	"HMMPfam_DUF634,superfamily_ARM-type_fold"	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
CASP8AP2	9994	hgsc.bcm.edu	36	6	90628743	90628743	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	90628743	90628743	G	A	SNP	CASP8AP2	ENST00000237177	human	ensembl	54_36p	1	known	silent	c.594	p.L198	0.18	NULL	superfamily_Homeodomain-like	-	no_stop_codon
CNPY3	10695	hgsc.bcm.edu	36	6	43013519	43013519	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	43013519	43013519	C	T	SNP	CNPY3	NM_006586	human	genbank	54_36p	1	validated	silent	c.459	p.N153	1	NULL	NULL	-	no_errors
COL11A2	1302	hgsc.bcm.edu	36	6	33240616	33240616	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	33240616	33240616	G	A	SNP	COL11A2	NM_080680	human	genbank	54_36p	-1	reviewed	silent	c.4854	p.D1618	0.98	"HMMSmart_SM00038,HMMPfam_COLFI"	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL11A2	1302	hgsc.bcm.edu	36	6	33262569	33262569	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	33262569	33262569	T	A	SNP	COL11A2	NM_080680	human	genbank	54_36p	-1	reviewed	missense	c.611	p.D204V	1	"HMMSmart_SM00282,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00282,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
COL12A1	1303	hgsc.bcm.edu	36	6	75912586	75912586	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	75912586	75912586	G	A	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	silent	c.4512	p.I1504	0.04	"superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen"	-	no_errors
COL12A1	1303	hgsc.bcm.edu	36	6	75912599	75912599	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	75912599	75912599	G	C	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	missense	c.4499	p.A1500G	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL9A1	1297	hgsc.bcm.edu	36	6	71060652	71060652	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	71060652	71060652	A	G	SNP	COL9A1	NM_001851	human	genbank	54_36p	-1	reviewed	missense	c.635	p.I212T	0.75	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl"	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen"	-	no_errors
DAXX	1616	hgsc.bcm.edu	36	6	33395474	33395474	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	33395474	33395474	G	T	SNP	DAXX	NM_001350	human	genbank	54_36p	-1	reviewed	nonsense	c.1601	p.S534*	0	HMMPfam_Daxx	HMMPfam_Daxx	-	no_errors
DDO	8528	hgsc.bcm.edu	36	6	110820934	110820934	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	110820934	110820934	G	-	DEL	DDO	NM_003649	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.847	p.L283fs	0.9	"superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain"	"superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,PatternScan_DAO"	"(deletion:cds_exon[110820671,110821238])"	no_errors
DDO	8528	hgsc.bcm.edu	36	6	110821236	110821236	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	110821236	110821236	A	C	SNP	DDO	NM_003649	human	genbank	54_36p	-1	reviewed	missense	c.545	p.I182R	0.25	"HMMPfam_DAO,superfamily_Nucleotide-binding domain"	"HMMPfam_DAO,PatternScan_DAO,superfamily_Nucleotide-binding domain,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
DDR1	780	hgsc.bcm.edu	36	6	30964747	30964747	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	30964747	30964747	A	G	SNP	DDR1	NM_013994	human	genbank	54_36p	1	reviewed	missense	c.169	p.T57A	1	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C"	###############################################################################################################################################################################################################################################################	-	no_errors
DNAH8	1769	hgsc.bcm.edu	36	6	38959736	38959736	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	38959736	38959736	A	T	SNP	DNAH8	NM_001371	human	genbank	54_36p	1	validated	missense	c.7592	p.N2531I	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5"	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DOPEY1	23033	hgsc.bcm.edu	36	6	83879848	83879848	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	83879848	83879848	C	A	SNP	DOPEY1	NM_015018	human	genbank	54_36p	1	validated	missense	c.769	p.H257N	1	HMMPfam_Dopey_N	HMMPfam_Dopey_N	-	no_errors
DST	667	hgsc.bcm.edu	36	6	56530246	56530246	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	56530246	56530246	T	A	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.7579	p.T2527S	0.99	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	hgsc.bcm.edu	36	6	56533084	56533084	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	56533084	56533084	C	-	DEL	DST	NM_183380	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.7516	p.A2506fs	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[56533051,56533180])"	no_errors
DST	667	hgsc.bcm.edu	36	6	56591591	56591591	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	56591591	56591591	G	T	SNP	DST	NM_001723	human	genbank	54_36p	-1	reviewed	missense	c.5200	p.H1734N	1	NULL	"HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin"	-	no_errors
DTNBP1	84062	hgsc.bcm.edu	36	6	15760329	15760329	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	15760329	15760329	C	A	SNP	DTNBP1	NM_032122	human	genbank	54_36p	-1	reviewed	missense	c.78	p.K26N	1	NULL	HMMPfam_Dysbindin	-	no_errors
ENPP3	5169	hgsc.bcm.edu	36	6	132089035	132089035	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	132089035	132089035	T	C	SNP	ENPP3	NM_005021	human	genbank	54_36p	1	reviewed	splice_site	c.1953+2	e20+2	0.98	-	-	-	no_errors
EPHA7	2045	hgsc.bcm.edu	36	6	94024620	94024620	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	94024620	94024620	C	A	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.2028	p.R676S	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
EXOC2	55770	hgsc.bcm.edu	36	6	582784	582802	+	Frame_Shift_Del	DEL	CCGGTCACAAGGGGGGGTT	CCGGTCACAAGGGGGGGTT	-	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	CCGGTCACAAGGGGGGGTT	CCGGTCACAAGGGGGGGTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	582784	582802	CCGGTCACAAGGGGGGGTT	-	DEL	EXOC2	NM_018303	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.35_17	p.Q6fs	1.000:1.000:0.957:1.000:1.000:0.997:1.000:1.000:0.998:0.999:0.962:0.566:1.000:1.000:1.000:1.000:1.000:0.997:1.000	superfamily_Ig_E-set	"superfamily_Ig_E-set,HMMPfam_TIG"	"(deletion:cds_exon[582701,582818])"	no_errors
EZR	7430	hgsc.bcm.edu	36	6	159126601	159126601	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	159126601	159126601	C	A	SNP	EZR	NM_003379	human	genbank	54_36p	-1	reviewed	silent	c.195	p.V65	0.92	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1"	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin"	-	no_errors
F13A1	2162	hgsc.bcm.edu	36	6	6167388	6167388	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	6167388	6167388	C	A	SNP	F13A1	NM_000129	human	genbank	54_36p	-1	reviewed	missense	c.989	p.G330V	1	"superfamily_SSF54001,HMMSmart_TGc,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES"	"superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglut_C,HMMPfam_Transglut_C"	-	no_errors
F13A1	2162	hgsc.bcm.edu	36	6	6250670	6250670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	6250670	6250670	G	A	SNP	F13A1	NM_000129	human	genbank	54_36p	-1	reviewed	missense	c.232	p.R78C	0.94	"HMMPfam_Transglut_N,superfamily_Ig_E-set"	"HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001"	-	no_errors
FAM83B	222584	hgsc.bcm.edu	36	6	54843423	54843423	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	54843423	54843423	G	A	SNP	FAM83B	NM_001010872	human	genbank	54_36p	1	validated	silent	c.420	p.R140	1	"HMMPfam_DUF1669,superfamily_SSF56024"	"HMMPfam_DUF1669,superfamily_SSF56024"	-	no_errors
FAM83B	222584	hgsc.bcm.edu	36	6	54913194	54913194	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	54913194	54913194	A	G	SNP	FAM83B	NM_001010872	human	genbank	54_36p	1	validated	missense	c.1466	p.K489R	1	NULL	"HMMPfam_DUF1669,superfamily_SSF56024"	-	no_errors
FBXO30	84085	hgsc.bcm.edu	36	6	146167274	146167274	+	Missense_Mutation	SNP	C	C	T	rs35721211	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	146167274	146167274	C	T	SNP	FBXO30	NM_032145	human	genbank	54_36p	-1	reviewed	missense	c.1961	p.R654H	1	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX"	"superfamily_Traf_like,superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX"	-	no_errors
FIG4	9896	hgsc.bcm.edu	36	6	110194626	110194626	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	110194626	110194626	T	G	SNP	FIG4	NM_014845	human	genbank	54_36p	1	reviewed	missense	c.1585	p.L529V	1	NULL	HMMPfam_Syja_N	-	no_errors
FRMD1	79981	hgsc.bcm.edu	36	6	168207252	168207252	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	168207252	168207252	G	A	SNP	FRMD1	NM_024919	human	genbank	54_36p	-1	validated	missense	c.682	p.R228W	0.99	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C"	-	no_errors
FRS3	10817	hgsc.bcm.edu	36	6	41848568	41848568	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	41848568	41848568	G	A	SNP	FRS3	NM_006653	human	genbank	54_36p	-1	reviewed	missense	c.361	p.R121C	1	NULL	"superfamily_SSF50729,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
FRS3	10817	hgsc.bcm.edu	36	6	41848652	41848652	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	41848652	41848652	G	A	SNP	FRS3	NM_006653	human	genbank	54_36p	-1	reviewed	missense	c.277	p.R93W	1	"HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729"	"HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729"	-	no_errors
FTSJD2	23070	hgsc.bcm.edu	36	6	37537317	37537317	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	37537317	37537317	G	C	SNP	FTSJD2	NM_015050	human	genbank	54_36p	1	validated	missense	c.1110	p.E370D	1	"HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMSmart_SM00443,HMMPfam_G-patch,HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1"	-	no_errors
FUCA2	2519	hgsc.bcm.edu	36	6	143867019	143867019	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	143867019	143867019	C	T	SNP	FUCA2	NM_032020	human	genbank	54_36p	-1	validated	missense	c.476	p.R159K	1	"HMMPfam_Alpha_L_fucos,superfamily_Glyco_hydro_cat,HMMSmart_Alpha_L_fucos"	"HMMPfam_Alpha_L_fucos,superfamily_Glyco_hydro_cat,HMMSmart_Alpha_L_fucos,PatternScan_ALPHA_L_FUCOSIDASE"	-	no_errors
GCNT2	2651	hgsc.bcm.edu	36	6	10665269	10665269	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	10665269	10665269	A	G	SNP	GCNT2	NM_001491	human	genbank	54_36p	1	reviewed	silent	c.627	p.K209	0.81	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
GPRC6A	222545	hgsc.bcm.edu	36	6	117237275	117237275	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	117237275	117237275	A	G	SNP	GPRC6A	NM_148963	human	genbank	54_36p	-1	validated	silent	c.393	p.C131	0.99	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3"	-	no_errors
GRM1	2911	hgsc.bcm.edu	36	6	146392385	146392385	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	146392385	146392385	T	C	SNP	GRM1	NM_000838	human	genbank	54_36p	1	reviewed	silent	c.39	p.F13	0.54	NULL	"superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg"	-	no_errors
GRM1	2911	hgsc.bcm.edu	36	6	146392605	146392605	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	146392605	146392605	G	C	SNP	GRM1	NM_000838	human	genbank	54_36p	1	reviewed	missense	c.259	p.D87H	1	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg,superfamily_SSF53822"	-	no_errors
GRM1	2911	hgsc.bcm.edu	36	6	146392817	146392817	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	146392817	146392817	G	A	SNP	GRM1	NM_000838	human	genbank	54_36p	1	reviewed	silent	c.471	p.A157	0.74	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg,superfamily_SSF53822"	-	no_errors
GRM1	2911	hgsc.bcm.edu	36	6	146393031	146393031	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	146393031	146393031	G	T	SNP	GRM1	NM_000838	human	genbank	54_36p	1	reviewed	missense	c.685	p.A229S	1	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg,superfamily_SSF53822"	-	no_errors
GTF2H4	2968	hgsc.bcm.edu	36	6	30987899	30987899	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	30987899	30987899	A	G	SNP	GTF2H4	NM_001517	human	genbank	54_36p	1	validated	missense	c.955	p.T319A	1	HMMPfam_Tfb2	HMMPfam_Tfb2	-	no_errors
HACE1	57531	hgsc.bcm.edu	36	6	105284880	105284880	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	105284880	105284880	G	A	SNP	HACE1	NM_020771	human	genbank	54_36p	-1	validated	missense	c.2618	p.S873L	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HACE1	57531	hgsc.bcm.edu	36	6	105351285	105351285	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	105351285	105351285	G	T	SNP	HACE1	NM_020771	human	genbank	54_36p	-1	validated	missense	c.754	p.H252N	1	"HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
HERV-FRD	405754	hgsc.bcm.edu	36	6	11212995	11212995	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	11212995	11212995	T	G	SNP	HERV-FRD	NM_207582	human	genbank	54_36p	-1	provisional	missense	c.535	p.T179P	0	NULL	HMMPfam_TLV_coat	-	no_errors
HIST1H1C	3006	hgsc.bcm.edu	36	6	26164454	26164454	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	26164454	26164454	G	A	SNP	HIST1H1C	NM_005319	human	genbank	54_36p	-1	reviewed	missense	c.182	p.A61V	1	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,HMMPfam_Linker_histone"	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,HMMPfam_Linker_histone"	-	no_errors
HIST1H1T	3010	hgsc.bcm.edu	36	6	26215997	26215997	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	26215997	26215997	C	G	SNP	HIST1H1T	NM_005323	human	genbank	54_36p	-1	reviewed	missense	c.304	p.G102R	0.99	"superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone"	"superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone"	-	no_errors
HIST1H3G	8355	hgsc.bcm.edu	36	6	26379302	26379302	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	26379302	26379302	C	A	SNP	HIST1H3G	NM_003534	human	genbank	54_36p	-1	reviewed	missense	c.290	p.C97F	1	"superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H3H	8357	hgsc.bcm.edu	36	6	27886100	27886100	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	27886100	27886100	G	T	SNP	HIST1H3H	NM_003536	human	genbank	54_36p	1	reviewed	silent	c.270	p.V90	1	"superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H4E	8367	hgsc.bcm.edu	36	6	26313049	26313049	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	26313049	26313049	G	C	SNP	HIST1H4E	NM_003545	human	genbank	54_36p	1	reviewed	silent	c.198	p.V66	0.99	"superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
HIVEP1	3096	hgsc.bcm.edu	36	6	12230599	12230599	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	12230599	12230599	G	A	SNP	HIVEP1	NM_002114	human	genbank	54_36p	1	validated	missense	c.2585	p.R862K	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HLA-DRB1	3123	hgsc.bcm.edu	36	6	32659926	32659926	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	32659926	32659926	G	-	DEL	HLA-DRB1	NM_002124	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.308	p.A103fs	0.91	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_beta"	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_beta,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	"(deletion:cds_exon[32659858,32660133])"	no_errors
HSPA1L	3305	hgsc.bcm.edu	36	6	31886183	31886183	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	31886183	31886183	C	G	SNP	HSPA1L	NM_005527	human	genbank	54_36p	-1	reviewed	missense	c.1546	p.E516Q	1	"HMMPfam_HSP70,superfamily_SSF100920"	"superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934"	-	no_errors
IBTK	25998	hgsc.bcm.edu	36	6	82977993	82977993	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	82977993	82977993	G	C	SNP	IBTK	NM_015525	human	genbank	54_36p	-1	reviewed	missense	c.2307	p.D769E	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_RCC1/BLIP-II,HMMPfam_RCC1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
IGF2R	3482	hgsc.bcm.edu	36	6	160437543	160437543	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	160437543	160437543	C	T	SNP	IGF2R	NM_000876	human	genbank	54_36p	1	reviewed	silent	c.6738	p.F2246	1	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR"	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1"	-	no_errors
IL17F	112744	hgsc.bcm.edu	36	6	52209902	52209902	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	52209902	52209902	T	A	SNP	IL17F	NM_052872	human	genbank	54_36p	-1	reviewed	missense	c.278	p.Y93F	0.91	"HMMPfam_IL17,superfamily_Cystine-knot cytokines"	"HMMPfam_IL17,superfamily_Cystine-knot cytokines"	-	no_errors
IL20RA	53832	hgsc.bcm.edu	36	6	137364735	137364735	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	137364735	137364735	C	T	SNP	IL20RA	NM_014432	human	genbank	54_36p	-1	reviewed	missense	c.1315	p.A439T	0	NULL	"HMMPfam_IL10Ra-bind,superfamily_Fibronectin type III"	-	no_errors
ITPR3	3710	hgsc.bcm.edu	36	6	33770806	33770806	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	33770806	33770806	A	G	SNP	ITPR3	NM_002224	human	genbank	54_36p	1	validated	missense	c.7913	p.H2638R	0.94	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR,HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_MIR,superfamily_SSF100909"	-	no_errors
JARID2	3720	hgsc.bcm.edu	36	6	15605105	15605105	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	15605105	15605105	T	G	SNP	JARID2	NM_004973	human	genbank	54_36p	1	reviewed	missense	c.1670	p.I557S	1	HMMSmart_SM00545	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2"	-	no_errors
KATNA1	11104	hgsc.bcm.edu	36	6	149961129	149961129	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	149961129	149961129	G	C	SNP	KATNA1	NM_007044	human	genbank	54_36p	-1	reviewed	missense	c.939	p.I313M	0.98	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C"	-	no_errors
KHDRBS2	202559	hgsc.bcm.edu	36	6	63053769	63053769	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	63053769	63053769	T	G	SNP	KHDRBS2	NM_152688	human	genbank	54_36p	-1	validated	missense	c.44	p.D15A	1	NULL	"HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1"	-	no_errors
KIF6	221458	hgsc.bcm.edu	36	6	39671829	39671829	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	39671829	39671829	C	A	SNP	KIF6	NM_145027	human	genbank	54_36p	-1	validated	missense	c.825	p.L275F	1	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin"	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
LAMA2	3908	hgsc.bcm.edu	36	6	129517421	129517421	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	129517421	129517421	G	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.1106	p.R369L	0.99	"superfamily_ConA_like_lec_gl,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA2	3908	hgsc.bcm.edu	36	6	129705303	129705303	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	129705303	129705303	C	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	silent	c.4434	p.N1478	1	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,superfamily_SSF57196"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA2	3908	hgsc.bcm.edu	36	6	129790663	129790663	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	129790663	129790663	A	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.5939	p.E1980V	1	superfamily_ConA_like_lec_gl	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA4	3910	hgsc.bcm.edu	36	6	112568718	112568718	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	112568718	112568718	A	G	SNP	LAMA4	NM_001105206	human	genbank	54_36p	-1	reviewed	silent	c.2913	p.S971	0.97	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_LAM_1,PatternScan_EGF_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	-	no_errors
LATS1	9113	hgsc.bcm.edu	36	6	150024869	150024869	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	150024869	150024869	G	T	SNP	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	missense	c.3082	p.P1028T	1	superfamily_Protein kinase-like (PK-like)	"superfamily_UBA-like,HMMPfam_UBA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C"	-	no_errors
LRRC1	55227	hgsc.bcm.edu	36	6	53768081	53768081	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	53768081	53768081	C	A	SNP	LRRC1	NM_018214	human	genbank	54_36p	1	validated	nonsense	c.68	p.S23*	1	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
MAN1A1	4121	hgsc.bcm.edu	36	6	119567731	119567731	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	119567731	119567731	G	C	SNP	MAN1A1	NM_005907	human	genbank	54_36p	-1	reviewed	missense	c.1008	p.N336K	1	"HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47"	"HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47"	-	no_errors
MANEA	79694	hgsc.bcm.edu	36	6	96160717	96160717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	96160717	96160717	G	T	SNP	MANEA	NM_024641	human	genbank	54_36p	1	validated	missense	c.1104	p.W368C	1	NULL	NULL	-	no_errors
MAP3K4	4216	hgsc.bcm.edu	36	6	161390741	161390741	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	161390741	161390741	G	T	SNP	MAP3K4	NM_005922	human	genbank	54_36p	1	reviewed	missense	c.1447	p.D483Y	0	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MAP3K5	4217	hgsc.bcm.edu	36	6	136974134	136974134	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	136974134	136974134	G	A	SNP	MAP3K5	NM_005923	human	genbank	54_36p	-1	reviewed	missense	c.2500	p.P834S	1	"HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like"	"HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM_homology"	-	no_errors
MAP3K7	6885	hgsc.bcm.edu	36	6	91338234	91338234	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	91338234	91338234	C	A	SNP	MAP3K7	NM_145331	human	genbank	54_36p	-1	reviewed	missense	c.134	p.G45V	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MAPK14	1432	hgsc.bcm.edu	36	6	36178396	36178396	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	36178396	36178396	A	T	SNP	MAPK14	NM_001315	human	genbank	54_36p	1	reviewed	missense	c.833	p.N278I	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK"	-	no_errors
MAS1L	116511	hgsc.bcm.edu	36	6	29563331	29563331	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	29563331	29563331	C	A	SNP	MAS1L	NM_052967	human	genbank	54_36p	-1	provisional	missense	c.328	p.V110L	0.98	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MAS1L	116511	hgsc.bcm.edu	36	6	29563511	29563511	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	29563511	29563511	C	T	SNP	MAS1L	NM_052967	human	genbank	54_36p	-1	provisional	missense	c.148	p.V50I	0.33	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MCHR2	84539	hgsc.bcm.edu	36	6	100497715	100497715	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	100497715	100497715	G	A	SNP	MCHR2	NM_001040179	human	genbank	54_36p	-1	validated	nonsense	c.418	p.R140*	0.8	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MCM3	4172	hgsc.bcm.edu	36	6	52246522	52246522	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	52246522	52246522	G	A	SNP	MCM3	NM_002388	human	genbank	54_36p	-1	reviewed	missense	c.1526	p.A509V	0.96	"HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540"	"superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1"	-	no_errors
MDC1	9656	hgsc.bcm.edu	36	6	30779295	30779295	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	30779295	30779295	T	C	SNP	MDC1	NM_014641	human	genbank	54_36p	-1	reviewed	splice_site	c.5563-2	e10-2	0.01	-	-	-	no_errors
MDN1	23195	hgsc.bcm.edu	36	6	90414761	90414761	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	90414761	90414761	A	C	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.16215	p.F5405L	1	"superfamily_vWA-like,HMMSmart_SM00327"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327"	-	no_errors
MDN1	23195	hgsc.bcm.edu	36	6	90541140	90541140	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	90541140	90541140	T	C	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.1855	p.I619V	1	"HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like"	-	no_errors
ME1	4199	hgsc.bcm.edu	36	6	84197329	84197329	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	84197329	84197329	G	T	SNP	ME1	NM_002395	human	genbank	54_36p	-1	reviewed	missense	c.64	p.P22T	1	superfamily_SSF53223	"superfamily_SSF53223,HMMPfam_malic,PatternScan_MALIC_ENZYMES,HMMPfam_Malic_M,superfamily_NAD(P)-bd"	-	no_errors
MICAL1	64780	hgsc.bcm.edu	36	6	109872832	109872832	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	109872832	109872832	T	G	SNP	MICAL1	NM_022765	human	genbank	54_36p	-1	validated	missense	c.2941	p.K981Q	1	NULL	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
MOXD1	26002	hgsc.bcm.edu	36	6	132660118	132660118	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	132660118	132660118	A	G	SNP	MOXD1	NM_015529	human	genbank	54_36p	-1	validated	missense	c.1709	p.I570T	0.02	NULL	"HMMSmart_SM00664,HMMPfam_DOMON,superfamily_PHM/PNGase F,HMMPfam_Cu2_monooxygen,HMMPfam_Cu2_monoox_C"	-	no_errors
NCR2	9436	hgsc.bcm.edu	36	6	41412012	41412012	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	41412012	41412012	G	C	SNP	NCR2	NM_004828	human	genbank	54_36p	1	validated	missense	c.262	p.D88H	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set"	-	no_errors
NCR3	259197	hgsc.bcm.edu	36	6	31665620	31665620	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	31665620	31665620	G	C	SNP	NCR3	NM_147130	human	genbank	54_36p	-1	validated	missense	c.306	p.D102E	0	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	-	no_errors
NEU1	4758	hgsc.bcm.edu	36	6	31935939	31935939	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	31935939	31935939	G	A	SNP	NEU1	NM_000434	human	genbank	54_36p	-1	reviewed	missense	c.880	p.R294C	1	superfamily_Sialidases (neuraminidases)	superfamily_Sialidases (neuraminidases)	-	no_errors
NKAPL	222698	hgsc.bcm.edu	36	6	28336131	28336131	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	28336131	28336131	G	A	SNP	NKAPL	NM_001007531	human	genbank	54_36p	1	provisional	missense	c.1003	p.E335K	1	HMMPfam_DUF926	HMMPfam_DUF926	-	no_errors
NOX3	50508	hgsc.bcm.edu	36	6	155802890	155802890	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	155802890	155802890	A	T	SNP	NOX3	NM_015718	human	genbank	54_36p	-1	provisional	missense	c.560	p.I187N	1	HMMPfam_Ferric_reduct	"HMMPfam_Ferric_reduct,superfamily_Riboflavin_synthase_like_b-brl,HMMPfam_FAD_binding_8,superfamily_SSF52343,HMMPfam_NAD_binding_6"	-	no_errors
NT5E	4907	hgsc.bcm.edu	36	6	86257048	86257048	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	86257048	86257048	C	T	SNP	NT5E	NM_002526	human	genbank	54_36p	1	validated	silent	c.1314	p.S438	0.22	"HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C"	"superfamily_SSF56300,PatternScan_5_NUCLEOTIDASE_1,HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C"	-	no_errors
OFCC1	266553	hgsc.bcm.edu	36	6	10008585	10008586	+	In_Frame_Ins	INS	-	-	GAG	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	10008585	10008586	-	GAG	INS	OFCC1	NM_153003	human	genbank	54_36p	-1	provisional	in_frame_ins	c.536_535	p.179in_frame_insP	0.330:0.372	NULL	NULL	-	no_errors
OR11A1	26531	hgsc.bcm.edu	36	6	29502551	29502551	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	29502551	29502551	T	A	SNP	OR11A1	NM_013937	human	genbank	54_36p	-1	provisional	missense	c.847	p.T283S	0.46	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2W1	26692	hgsc.bcm.edu	36	6	29120145	29120145	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	29120145	29120145	C	A	SNP	OR2W1	NM_030903	human	genbank	54_36p	-1	validated	missense	c.787	p.G263C	0.02	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PBX2	5089	hgsc.bcm.edu	36	6	32264543	32264543	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	32264543	32264543	G	A	SNP	PBX2	NM_002586	human	genbank	54_36p	-1	reviewed	missense	c.230	p.A77V	1	HMMPfam_PBC	"HMMPfam_PBC,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PDSS2	57107	hgsc.bcm.edu	36	6	107702052	107702052	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	107702052	107702052	T	C	SNP	PDSS2	NM_020381	human	genbank	54_36p	-1	validated	silent	c.504	p.L168	1	superfamily_Terpenoid synthases	superfamily_Terpenoid synthases	-	no_errors
PGBD1	84547	hgsc.bcm.edu	36	6	28377517	28377517	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	28377517	28377517	T	G	SNP	PGBD1	NM_032507	human	genbank	54_36p	1	reviewed	missense	c.1907	p.L636W	0.95	NULL	"HMMPfam_SCAN,HMMSmart_SCAN"	-	no_errors
PGBD1	84547	hgsc.bcm.edu	36	6	28377944	28377944	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	28377944	28377944	C	T	SNP	PGBD1	NM_032507	human	genbank	54_36p	1	reviewed	silent	c.2334	p.H778	0.79	NULL	"HMMPfam_SCAN,HMMSmart_SCAN"	-	no_errors
PHACTR1	221692	hgsc.bcm.edu	36	6	12857973	12857973	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	12857973	12857973	T	C	SNP	PHACTR1	NM_030948	human	genbank	54_36p	1	validated	missense	c.215	p.L72P	1	NULL	"HMMPfam_RPEL,HMMSmart_SM00707"	-	no_errors
PHACTR1	221692	hgsc.bcm.edu	36	6	13336184	13336184	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	13336184	13336184	G	C	SNP	PHACTR1	NM_030948	human	genbank	54_36p	1	validated	missense	c.1144	p.E382Q	1	NULL	"HMMPfam_RPEL,HMMSmart_SM00707"	-	no_errors
PHIP	55023	hgsc.bcm.edu	36	6	79711818	79711818	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	79711818	79711818	T	C	SNP	PHIP	NM_017934	human	genbank	54_36p	-1	validated	silent	c.4746	p.E1582	1	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
PKHD1	5314	hgsc.bcm.edu	36	6	51599828	51599828	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	51599828	51599828	T	C	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.11711	p.N3904S	0.17	NULL	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like"	-	no_errors
PKHD1	5314	hgsc.bcm.edu	36	6	51840795	51840795	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	51840795	51840795	G	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.7558	p.H2520Y	1	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
POPDC3	64208	hgsc.bcm.edu	36	6	105716247	105716247	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	105716247	105716247	T	C	SNP	POPDC3	NM_022361	human	genbank	54_36p	-1	reviewed	missense	c.231	p.I77M	0.68	NULL	"HMMPfam_Popeye,superfamily_cAMP-binding domain-like"	-	no_errors
POU5F1	5460	hgsc.bcm.edu	36	6	31240988	31240988	+	Missense_Mutation	SNP	C	C	G	rs60346131	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	31240988	31240988	C	G	SNP	POU5F1	NM_002701	human	genbank	54_36p	-1	validated	missense	c.712	p.E238Q	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PPARD	5467	hgsc.bcm.edu	36	6	35500144	35500144	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	35500144	35500144	C	T	SNP	PPARD	NM_006238	human	genbank	54_36p	1	reviewed	nonsense	c.688	p.Q230*	1	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
PREP	5550	hgsc.bcm.edu	36	6	105928083	105928083	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	105928083	105928083	C	T	SNP	PREP	NM_002726	human	genbank	54_36p	-1	reviewed	nonsense	c.449	p.W150*	1	"superfamily_Peptidase_S9A_N,HMMPfam_Peptidase_S9_N"	"superfamily_Peptidase_S9A_N,HMMPfam_Peptidase_S9_N,superfamily_SSF53474,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER"	-	no_errors
PRICKLE4	29964	hgsc.bcm.edu	36	6	41862551	41862552	+	In_Frame_Ins	INS	-	-	CTT	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	41862551	41862552	-	CTT	INS	PRICKLE4	NM_013397	human	genbank	54_36p	1	validated	in_frame_ins	c.861_862	p.288in_frame_insL	0.001:0.002	NULL	"HMMPfam_PET,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
PRSS16	10279	hgsc.bcm.edu	36	6	27331044	27331058	+	In_Frame_Del	DEL	AAGGAGAGCCAGATT	AAGGAGAGCCAGATT	-	rs5030663	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	AAGGAGAGCCAGATT	AAGGAGAGCCAGATT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	27331044	27331058	AAGGAGAGCCAGATT	-	DEL	PRSS16	NM_005865	human	genbank	54_36p	1	reviewed	in_frame_del	c.1516_1530	p.ESQIK507in_frame_del	0.008:0.021:0.022:0.020:0.048:0.068:0.213:0.244:0.303:0.312:0.297:0.218:0.073:0.000:0.000	NULL	"HMMPfam_Peptidase_S28,superfamily_SSF53474"	"(deletion:cds_exon[27331005,27331073])"	no_errors
PRSS35	167681	hgsc.bcm.edu	36	6	84291068	84291068	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	84291068	84291068	G	A	SNP	PRSS35	NM_153362	human	genbank	54_36p	1	provisional	missense	c.1189	p.A397T	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc"	"PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS"	-	no_errors
PSORS1C1	170679	hgsc.bcm.edu	36	6	31214212	31214212	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	31214212	31214212	C	G	SNP	PSORS1C1	NM_014068	human	genbank	54_36p	1	provisional	missense	c.40	p.L14V	0.2	NULL	NULL	-	no_errors
PSORS1C1	170679	hgsc.bcm.edu	36	6	31214479	31214480	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	31214479	31214480	-	C	INS	PSORS1C1	NM_014068	human	genbank	54_36p	1	provisional	frame_shift_ins	c.111_112	p.H39fs	0.000:0.001	NULL	NULL	-	no_errors
RARS2	57038	hgsc.bcm.edu	36	6	88291076	88291076	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	6	88291076	88291076	C	T	SNP	RARS2	NM_020320	human	genbank	54_36p	-1	reviewed	missense	c.892	p.V298I	1	"HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase"	###############################################################################################################################################################################################################################################################	-	no_errors
RBM16	22828	hgsc.bcm.edu	36	6	155195708	155195708	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	155195708	155195708	G	T	SNP	RBM16	NM_014892	human	genbank	54_36p	1	validated	missense	c.3303	p.E1101D	1	NULL	"superfamily_ENTH_VHS,HMMSmart_RPR,HMMPfam_DUF618,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
CLVS2	134829	hgsc.bcm.edu	36	6	123426558	123426558	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	123426558	123426558	G	C	SNP	RLBP1L2	NM_001010852	human	genbank	54_36p	1	provisional	missense	c.937	p.D313H	1	NULL	"superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMPfam_CRAL_TRIO,superfamily_CRAL/TRIO domain,HMMSmart_SM00516,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
RNF146	81847	hgsc.bcm.edu	36	6	127650166	127650166	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	127650166	127650166	G	A	SNP	RNF146	NM_030963	human	genbank	54_36p	1	provisional	missense	c.712	p.A238T	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_WWE,HMMSmart_WWE"	-	no_errors
ROS1	6098	hgsc.bcm.edu	36	6	117831043	117831043	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	117831043	117831043	G	A	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	nonsense	c.529	p.Q177*	0.99	"HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like"	"HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF63825,HMMSmart_LY,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
RPS6KA2	6196	hgsc.bcm.edu	36	6	166747294	166747294	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	6	166747294	166747294	C	A	SNP	RPS6KA2	NM_001006932	human	genbank	54_36p	-1	reviewed	missense	c.2078	p.R693L	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
RREB1	6239	hgsc.bcm.edu	36	6	7171815	7171815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	7171815	7171815	C	A	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	missense	c.824	p.P275H	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
RUNX2	860	hgsc.bcm.edu	36	6	45622685	45622685	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	45622685	45622685	G	A	SNP	RUNX2	NM_001024630	human	genbank	54_36p	1	reviewed	missense	c.1435	p.G479S	1	NULL	"HMMPfam_Runt,superfamily_P53_like_DNA_bnd,HMMPfam_RunxI"	-	no_errors
SCGN	10590	hgsc.bcm.edu	36	6	25773225	25773225	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	25773225	25773225	G	A	SNP	SCGN	NM_006998	human	genbank	54_36p	1	reviewed	missense	c.322	p.V108M	1	superfamily_EF-hand	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
SCUBE3	222663	hgsc.bcm.edu	36	6	35315512	35315512	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	35315512	35315512	G	C	SNP	SCUBE3	NM_152753	human	genbank	54_36p	1	provisional	missense	c.835	p.D279H	1	"PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
SEC63	11231	hgsc.bcm.edu	36	6	108321448	108321448	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	108321448	108321448	T	-	DEL	SEC63	NM_007214	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1605	p.K535fs	1	"HMMPfam_Sec63,HMMSmart_SEC63"	"PatternScan_DNAJ_1,superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,HMMPfam_Sec63,HMMSmart_SEC63"	"(deletion:cds_exon[108321379,108321552])"	no_errors
SEC63	11231	hgsc.bcm.edu	36	6	108321467	108321467	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	108321467	108321467	T	-	DEL	SEC63	NM_007214	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1586	p.K529fs	1	"HMMPfam_Sec63,HMMSmart_SEC63"	"HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,HMMPfam_Sec63,HMMSmart_SEC63,PatternScan_DNAJ_1"	"(deletion:cds_exon[108321379,108321552])"	no_errors
SEC63	11231	hgsc.bcm.edu	36	6	108352750	108352750	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	108352750	108352750	C	A	SNP	SEC63	NM_007214	human	genbank	54_36p	-1	reviewed	nonsense	c.304	p.E102*	1	superfamily_DnaJ_N	"HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,HMMPfam_Sec63,HMMSmart_SEC63,PatternScan_DNAJ_1"	-	no_errors
SERPINB1	1992	hgsc.bcm.edu	36	6	2781139	2781139	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	2781139	2781139	C	T	SNP	SERPINB1	NM_030666	human	genbank	54_36p	-1	provisional	missense	c.685	p.V229I	0.92	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN"	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
SESN1	27244	hgsc.bcm.edu	36	6	109430209	109430209	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	109430209	109430209	C	G	SNP	SESN1	NM_014454	human	genbank	54_36p	-1	provisional	missense	c.310	p.G104R	1	HMMPfam_PA26	"HMMPfam_PA26,superfamily_SSF69118"	-	no_errors
SIM1	6492	hgsc.bcm.edu	36	6	100945446	100945446	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	100945446	100945446	A	T	SNP	SIM1	NM_005068	human	genbank	54_36p	-1	reviewed	missense	c.1813	p.C605S	1	HMMPfam_SIM_C	"HMMPfam_HLH,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_SIM_C"	-	no_errors
SIM1	6492	hgsc.bcm.edu	36	6	100948242	100948242	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	100948242	100948242	C	T	SNP	SIM1	NM_005068	human	genbank	54_36p	-1	reviewed	missense	c.1412	p.R471Q	0.97	HMMPfam_SIM_C	"HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,HMMPfam_SIM_C,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785"	-	no_errors
SKIV2L	6499	hgsc.bcm.edu	36	6	32038740	32038740	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	32038740	32038740	G	A	SNP	SKIV2L	NM_006929	human	genbank	54_36p	1	reviewed	splice_site	c.1297-1	e13-1	1	-	-	-	no_errors
SLC17A1	6568	hgsc.bcm.edu	36	6	25927345	25927345	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	25927345	25927345	G	C	SNP	SLC17A1	NM_005074	human	genbank	54_36p	-1	validated	silent	c.546	p.P182	0	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC29A1	2030	hgsc.bcm.edu	36	6	44305329	44305329	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	44305329	44305329	C	T	SNP	SLC29A1	NM_001078174	human	genbank	54_36p	1	reviewed	missense	c.137	p.S46F	0.03	NULL	HMMPfam_Nucleoside_tran	-	no_errors
SMOC2	64094	hgsc.bcm.edu	36	6	168669894	168669894	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	168669894	168669894	C	G	SNP	SMOC2	NM_022138	human	genbank	54_36p	1	provisional	silent	c.276	p.A92	1	"superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1"	"superfamily_Thyroglobulin_1,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg"	-	no_errors
SMOC2	64094	hgsc.bcm.edu	36	6	168793369	168793369	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	168793369	168793369	C	A	SNP	SMOC2	NM_022138	human	genbank	54_36p	1	provisional	missense	c.1024	p.P342T	0.99	superfamily_SSF47473	"HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1,HMMSmart_EFh,HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473"	-	no_errors
SYNE1	23345	hgsc.bcm.edu	36	6	152511016	152511017	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	152511016	152511017	-	T	INS	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.24833_24832	p.V8278fs	1.000:1.000	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH"	-	no_errors
SYNE1	23345	hgsc.bcm.edu	36	6	152681008	152681008	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	152681008	152681008	G	T	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	silent	c.16473	p.G5491	0.01	"HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SYNE1	23345	hgsc.bcm.edu	36	6	152686485	152686485	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	152686485	152686485	C	A	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.15738	p.E5246D	0.78	"HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SYNE1	23345	hgsc.bcm.edu	36	6	152739225	152739225	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	152739225	152739225	C	A	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.9308	p.S3103I	0.92	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
TAGAP	117289	hgsc.bcm.edu	36	6	159380310	159380310	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	159380310	159380310	G	C	SNP	TAGAP	NM_054114	human	genbank	54_36p	-1	reviewed	missense	c.607	p.R203G	0.02	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
TBC1D7	51256	hgsc.bcm.edu	36	6	13429172	13429172	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	13429172	13429172	G	A	SNP	TBC1D7	NM_016495	human	genbank	54_36p	-1	validated	missense	c.328	p.R110C	1	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
TCP11	6954	hgsc.bcm.edu	36	6	35195076	35195076	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	35195076	35195076	C	A	SNP	TCP11	NM_001093728	human	genbank	54_36p	-1	validated	missense	c.1225	p.G409C	0.98	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
TINAG	27283	hgsc.bcm.edu	36	6	54299591	54299591	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	6	54299591	54299591	G	A	SNP	TINAG	NM_014464	human	genbank	54_36p	1	validated	missense	c.542	p.G181E	1	superfamily_Cysteine proteinases	"HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN"	-	no_errors
TNFAIP3	7128	hgsc.bcm.edu	36	6	138234115	138234115	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	138234115	138234115	A	C	SNP	TNFAIP3	NM_006290	human	genbank	54_36p	1	reviewed	missense	c.58	p.K20Q	1	NULL	"HMMPfam_OTU,HMMPfam_zf-A20,HMMSmart_ZnF_A20"	-	no_errors
TNFAIP3	7128	hgsc.bcm.edu	36	6	138237686	138237686	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	138237686	138237686	T	G	SNP	TNFAIP3	NM_006290	human	genbank	54_36p	1	reviewed	missense	c.307	p.C103G	1	HMMPfam_OTU	"HMMPfam_zf-A20,HMMSmart_ZnF_A20,HMMPfam_OTU"	-	no_errors
TRIM31	11074	hgsc.bcm.edu	36	6	30188549	30188549	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	30188549	30188549	G	T	SNP	TRIM31	NM_007028	human	genbank	54_36p	-1	reviewed	missense	c.13	p.Q5K	0	superfamily_RING/U-box	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336"	-	no_errors
TRIM40	135644	hgsc.bcm.edu	36	6	30223553	30223553	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	30223553	30223553	C	G	SNP	TRIM40	NM_138700	human	genbank	54_36p	1	validated	silent	c.675	p.P225	0.46	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_B-box zinc-binding domain"	-	no_errors
TSPYL1	7259	hgsc.bcm.edu	36	6	116706778	116706778	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	6	116706778	116706778	G	C	SNP	TSPYL1	NM_003309	human	genbank	54_36p	-1	validated	nonsense	c.909	p.Y303*	1	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
TSPYL1	7259	hgsc.bcm.edu	36	6	116707014	116707014	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	116707014	116707014	C	A	SNP	TSPYL1	NM_003309	human	genbank	54_36p	-1	validated	nonsense	c.673	p.E225*	0	NULL	HMMPfam_NAP	-	no_errors
TSPYL1	7259	hgsc.bcm.edu	36	6	116707158	116707159	+	In_Frame_Ins	INS	-	-	CAC	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	116707158	116707159	-	CAC	INS	TSPYL1	NM_003309	human	genbank	54_36p	-1	validated	in_frame_ins	c.529_528	p.176in_frame_insV	0.000:0.000	NULL	HMMPfam_NAP	-	no_errors
TTK	7272	hgsc.bcm.edu	36	6	80804426	80804426	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	80804426	80804426	A	C	SNP	TTK	NM_003318	human	genbank	54_36p	1	provisional	silent	c.2073	p.P691	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TTK	7272	hgsc.bcm.edu	36	6	80808616	80808616	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	80808616	80808616	A	-	DEL	TTK	NM_003318	human	genbank	54_36p	1	provisional	frame_shift_del	c.2552	p.R854fs	0.08	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"(deletion:cds_exon[80808555,80808638])"	no_errors
USP49	25862	hgsc.bcm.edu	36	6	41881358	41881358	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	41881358	41881358	G	T	SNP	USP49	NM_018561	human	genbank	54_36p	-1	provisional	missense	c.1342	p.Q448K	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
VPS52	6293	hgsc.bcm.edu	36	6	33327328	33327328	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	33327328	33327328	C	T	SNP	VPS52	NM_022553	human	genbank	54_36p	-1	reviewed	missense	c.1970	p.S657N	1	NULL	HMMPfam_Vps52	-	no_errors
WRNIP1	56897	hgsc.bcm.edu	36	6	2729565	2729565	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	6	2729565	2729565	G	A	SNP	WRNIP1	NM_020135	human	genbank	54_36p	1	reviewed	missense	c.1651	p.D551N	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00734,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	-	no_errors
ZFP57	346171	hgsc.bcm.edu	36	6	29748688	29748688	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	29748688	29748688	A	G	SNP	ZFP57	NM_001109809	human	genbank	54_36p	-1	inferred	silent	c.1119	p.F373	0.88	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF292	23036	hgsc.bcm.edu	36	6	88024767	88024767	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	88024767	88024767	G	T	SNP	ZNF292	NM_015021	human	genbank	54_36p	1	validated	missense	c.4701	p.L1567F	1	NULL	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF323	64288	hgsc.bcm.edu	36	6	28402611	28402611	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	6	28402611	28402611	C	T	SNP	ZNF323	NM_145909	human	genbank	54_36p	-1	validated	splice_site	c.533-1	e3-1	0.02	-	-	-	no_errors
ZNF451	26036	hgsc.bcm.edu	36	6	57120398	57120398	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	6	57120398	57120398	G	T	SNP	ZNF451	NM_001031623	human	genbank	54_36p	1	validated	missense	c.1556	p.R519L	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ABCB1	5243	hgsc.bcm.edu	36	7	86982618	86982618	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	86982618	86982618	G	A	SNP	ABCB1	NM_000927	human	genbank	54_36p	-1	reviewed	silent	c.3147	p.D1049	0.92	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCB4	5244	hgsc.bcm.edu	36	7	86894012	86894012	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	86894012	86894012	G	C	SNP	ABCB4	NM_018849	human	genbank	54_36p	-1	reviewed	missense	c.2054	p.T685S	0	NULL	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ADAM22	53616	hgsc.bcm.edu	36	7	87401725	87401725	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	87401725	87401725	G	A	SNP	ADAM22	NM_021723	human	genbank	54_36p	1	reviewed	silent	c.9	p.A3	0.37	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM22	53616	hgsc.bcm.edu	36	7	87620519	87620519	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	87620519	87620519	G	C	SNP	ADAM22	NM_021723	human	genbank	54_36p	1	reviewed	missense	c.1729	p.G577R	1	"HMMPfam_ADAM_CR,HMMSmart_SM00608"	###############################################################################################################################################################################################################################################################	-	no_errors
AGAP3	116988	hgsc.bcm.edu	36	7	150446246	150446246	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	150446246	150446246	G	A	SNP	AGAP3	NM_031946	human	genbank	54_36p	1	validated	silent	c.723	p.A241	0.98	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	###############################################################################################################################################################################################################################################################	-	no_errors
AGAP3	116988	hgsc.bcm.edu	36	7	150468093	150468093	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	150468093	150468093	C	-	DEL	AGAP3	NM_031946	human	genbank	54_36p	1	validated	frame_shift_del	c.1761	p.S587fs	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[150467999,150468136])"	no_errors
AKAP9	10142	hgsc.bcm.edu	36	7	91490114	91490115	+	In_Frame_Ins	INS	-	-	AAC	rs10644111	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	91490114	91490115	-	AAC	INS	AKAP9	NM_005751	human	genbank	54_36p	1	reviewed	in_frame_ins	c.4003_4004	p.1336in_frame_insQ	0.334:0.401	NULL	"PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil"	-	no_errors
AKR1B1	231	hgsc.bcm.edu	36	7	133786171	133786171	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	133786171	133786171	C	T	SNP	AKR1B1	NM_001628	human	genbank	54_36p	-1	reviewed	silent	c.258	p.K86	0	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
AMPH	273	hgsc.bcm.edu	36	7	38471596	38471596	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	38471596	38471596	G	A	SNP	AMPH	NM_001635	human	genbank	54_36p	-1	reviewed	missense	c.745	p.P249S	1	NULL	"HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
ATG9B	285973	hgsc.bcm.edu	36	7	150351124	150351124	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	150351124	150351124	C	A	SNP	ATG9B	NM_173681	human	genbank	54_36p	-1	validated	silent	c.762	p.P254	0	NULL	HMMPfam_APG9	-	no_errors
ATG9B	285973	hgsc.bcm.edu	36	7	150352150	150352151	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	150352150	150352151	-	G	INS	ATG9B	NM_173681	human	genbank	54_36p	-1	validated	frame_shift_ins	c.294_293	p.T99fs	0.068:0.112	NULL	HMMPfam_APG9	-	no_errors
BMPER	168667	hgsc.bcm.edu	36	7	33911791	33911791	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	33911791	33911791	A	C	SNP	BMPER	NM_133468	human	genbank	54_36p	1	validated	missense	c.41	p.Y14S	0.77	NULL	"HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL"	-	no_errors
C7orf10	79783	hgsc.bcm.edu	36	7	40455461	40455461	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	40455461	40455461	G	T	SNP	C7orf10	NM_024728	human	genbank	54_36p	1	predicted	missense	c.777	p.Q259H	0.99	"superfamily_CoA-Trfase_fam_III,HMMPfam_CoA_transf_3"	"superfamily_CoA-Trfase_fam_III,HMMPfam_CoA_transf_3"	-	no_errors
FAM200A	221786	hgsc.bcm.edu	36	7	98983560	98983560	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	98983560	98983560	G	C	SNP	C7orf38	NM_145111	human	genbank	54_36p	-1	validated	missense	c.407	p.S136C	0.93	NULL	NULL	-	no_errors
C7orf53	286006	hgsc.bcm.edu	36	7	111914312	111914312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	111914312	111914312	G	A	SNP	C7orf53	NM_182597	human	genbank	54_36p	1	validated	missense	c.226	p.A76T	0.7	NULL	NULL	-	no_errors
C7orf70	84792	hgsc.bcm.edu	36	7	6337095	6337095	+	Silent	SNP	A	A	G	rs61996356	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	6337095	6337095	A	G	SNP	MGC12966	NM_001037163	human	genbank	54_36p	-1	validated	silent	c.216	p.A72	0	NULL	NULL	-	no_errors
CADPS2	93664	hgsc.bcm.edu	36	7	122056610	122056610	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	122056610	122056610	G	A	SNP	CADPS2	NM_017954	human	genbank	54_36p	-1	validated	silent	c.795	p.N265	0.94	NULL	"HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041"	-	no_errors
CNTNAP2	26047	hgsc.bcm.edu	36	7	147743507	147743507	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	147743507	147743507	C	T	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.3862	p.R1288C	1	HMMSmart_SM00294	###############################################################################################################################################################################################################################################################	-	no_errors
COBL	23242	hgsc.bcm.edu	36	7	51063355	51063355	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	51063355	51063355	G	T	SNP	COBL	NM_015198	human	genbank	54_36p	-1	validated	missense	c.2932	p.L978M	0	NULL	"HMMPfam_Cobl,HMMPfam_WH2,HMMSmart_SM00246"	-	no_errors
CPA5	93979	hgsc.bcm.edu	36	7	129777070	129777070	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	129777070	129777070	C	T	SNP	CPA5	NM_080385	human	genbank	54_36p	1	validated	missense	c.217	p.P73S	1	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
CPA5	93979	hgsc.bcm.edu	36	7	129789577	129789577	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	129789577	129789577	G	A	SNP	CPA5	NM_080385	human	genbank	54_36p	1	validated	silent	c.597	p.E199	1	"HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases"	"HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2,HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors,superfamily_Zn-dependent exopeptidases"	-	no_errors
CROT	54677	hgsc.bcm.edu	36	7	86849386	86849386	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	86849386	86849386	A	G	SNP	CROT	NM_021151	human	genbank	54_36p	1	reviewed	missense	c.1123	p.K375E	1	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf"	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2"	-	no_errors
CUX1	1523	hgsc.bcm.edu	36	7	101630092	101630092	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	101630092	101630092	G	T	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	missense	c.1982	p.R661L	1	NULL	"superfamily_lambda repressor-like DNA-binding domains,HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
DGKB	1607	hgsc.bcm.edu	36	7	14580406	14580406	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	14580406	14580406	G	A	SNP	DGKB	NM_004080	human	genbank	54_36p	-1	reviewed	missense	c.1729	p.P577S	1	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
DMTF1	9988	hgsc.bcm.edu	36	7	86638306	86638306	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	86638306	86638306	G	A	SNP	DMTF1	NM_021145	human	genbank	54_36p	1	reviewed	missense	c.292	p.D98N	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
DNAH11	8701	hgsc.bcm.edu	36	7	21576352	21576352	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	21576352	21576352	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	silent	c.1335	p.F445	0.1	HMMPfam_DHC_N1	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy"	-	no_errors
EGFR	1956	hgsc.bcm.edu	36	7	55191950	55191950	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	55191950	55191950	T	-	DEL	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1138	p.S380fs	0.25	"superfamily_L domain-like,HMMPfam_Recep_L_domain"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[55191946,55192019])"	no_errors
EGFR	1956	hgsc.bcm.edu	36	7	55209171	55209171	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	55209171	55209171	G	C	SNP	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	missense	c.2125	p.E709Q	1	superfamily_Protein kinase-like (PK-like)	###############################################################################################################################################################################################################################################################	-	no_errors
EGFR	1956	hgsc.bcm.edu	36	7	55216511	55216511	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	55216511	55216511	C	G	SNP	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	missense	c.2315	p.P772R	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
EGFR	1956	hgsc.bcm.edu	36	7	55226952	55226952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	55226952	55226952	C	T	SNP	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	missense	c.2516	p.A839V	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
EGFR	1956	hgsc.bcm.edu	36	7	55240774	55240774	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	55240774	55240774	G	A	SNP	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	silent	c.3603	p.A1201	0.54	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB4	2050	hgsc.bcm.edu	36	7	100248358	100248358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	100248358	100248358	C	T	SNP	EPHB4	NM_004444	human	genbank	54_36p	-1	reviewed	missense	c.2065	p.V689I	0.98	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
EXOC4	60412	hgsc.bcm.edu	36	7	132965359	132965359	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	132965359	132965359	T	C	SNP	EXOC4	NM_021807	human	genbank	54_36p	1	reviewed	missense	c.1439	p.I480T	1	NULL	"HMMPfam_Sec8_exocyst,PatternScan_DEAH_ATP_HELICASE"	-	no_errors
FBXO24	26261	hgsc.bcm.edu	36	7	100028389	100028389	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	100028389	100028389	C	T	SNP	FBXO24	NM_033506	human	genbank	54_36p	1	reviewed	silent	c.606	p.Y202	0.99	NULL	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_RCC1/BLIP-II"	-	no_errors
FBXO24	26261	hgsc.bcm.edu	36	7	100030098	100030098	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	100030098	100030098	C	G	SNP	FBXO24	NM_033506	human	genbank	54_36p	1	reviewed	missense	c.950	p.T317R	1	superfamily_RCC1/BLIP-II	"HMMPfam_F-box,HMMSmart_SM00256,superfamily_RCC1/BLIP-II,superfamily_F-box domain"	-	no_errors
FERD3L	222894	hgsc.bcm.edu	36	7	19151271	19151272	+	In_Frame_Ins	INS	-	-	TCT	rs34966908	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	19151271	19151272	-	TCT	INS	FERD3L	NM_152898	human	genbank	54_36p	-1	validated	in_frame_ins	c.240_239	p.82in_frame_insE	0.827:0.841	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
FKBP9	11328	hgsc.bcm.edu	36	7	32982589	32982589	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	32982589	32982589	G	A	SNP	FKBP9	NM_007270	human	genbank	54_36p	1	validated	missense	c.656	p.R219H	1	"superfamily_SSF54534,HMMPfam_FKBP_C"	"superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET"	-	no_errors
FOXP2	93986	hgsc.bcm.edu	36	7	114091628	114091628	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	114091628	114091628	G	A	SNP	FOXP2	NM_148898	human	genbank	54_36p	1	reviewed	missense	c.1979	p.S660N	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
FSCN3	29999	hgsc.bcm.edu	36	7	127022763	127022763	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	127022763	127022763	A	T	SNP	FSCN3	NM_020369	human	genbank	54_36p	1	provisional	missense	c.311	p.K104M	1	"superfamily_Actin_crosslink,HMMPfam_Fascin"	"superfamily_Actin_crosslink,HMMPfam_Fascin"	-	no_errors
FTSJ2	29960	hgsc.bcm.edu	36	7	2245719	2245719	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	2245719	2245719	C	T	SNP	FTSJ2	NM_013393	human	genbank	54_36p	-1	reviewed	missense	c.158	p.R53Q	1	"superfamily_SSF53335,HMMPfam_FtsJ"	"superfamily_SSF53335,HMMPfam_FtsJ"	-	no_errors
GJC3	349149	hgsc.bcm.edu	36	7	99364444	99364444	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	99364444	99364444	C	T	SNP	GJC3	NM_181538	human	genbank	54_36p	-1	provisional	missense	c.736	p.D246N	0	NULL	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
GLI3	2737	hgsc.bcm.edu	36	7	42031491	42031491	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	42031491	42031491	G	A	SNP	GLI3	NM_000168	human	genbank	54_36p	-1	reviewed	missense	c.1253	p.T418M	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GPNMB	10457	hgsc.bcm.edu	36	7	23263171	23263171	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	23263171	23263171	G	C	SNP	GPNMB	NM_001005340	human	genbank	54_36p	1	reviewed	missense	c.503	p.W168S	1	NULL	"superfamily_PKD domain,HMMSmart_SM00089,HMMPfam_PKD"	-	no_errors
GRM8	2918	hgsc.bcm.edu	36	7	125960644	125960644	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	125960644	125960644	T	C	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	missense	c.2028	p.I676M	1	HMMPfam_7tm_3	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73582041	73582041	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	73582041	73582041	C	T	SNP	GTF2IRD1	NM_016328	human	genbank	54_36p	1	reviewed	missense	c.1132	p.R378W	1	HMMPfam_GTF2I	HMMPfam_GTF2I	-	no_errors
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73643154	73643154	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	73643154	73643154	C	T	SNP	GTF2IRD1	NM_016328	human	genbank	54_36p	1	reviewed	silent	c.2508	p.D836	0.97	HMMPfam_GTF2I	HMMPfam_GTF2I	-	no_errors
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73643154	73643154	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	73643154	73643154	C	T	SNP	GTF2IRD1	NM_016328	human	genbank	54_36p	1	reviewed	silent	c.2508	p.D836	0.97	HMMPfam_GTF2I	HMMPfam_GTF2I	-	no_errors
HECW1	23072	hgsc.bcm.edu	36	7	43450726	43450726	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	43450726	43450726	A	G	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	missense	c.1430	p.E477G	0	NULL	"HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
HECW1	23072	hgsc.bcm.edu	36	7	43556567	43556567	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	43556567	43556567	A	T	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	splice_site	c.4249-2	e25-2	1	-	-	-	no_errors
HIBADH	11112	hgsc.bcm.edu	36	7	27655740	27655740	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	27655740	27655740	T	C	SNP	HIBADH	NM_152740	human	genbank	54_36p	-1	validated	silent	c.129	p.G43	1	"HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains"	"HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_3_HYDROXYISOBUT_DH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like"	-	no_errors
HTR5A	3361	hgsc.bcm.edu	36	7	154494257	154494257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	154494257	154494257	G	A	SNP	HTR5A	NM_024012	human	genbank	54_36p	1	reviewed	missense	c.715	p.V239I	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HUS1	3364	hgsc.bcm.edu	36	7	47984571	47984571	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	47984571	47984571	G	T	SNP	HUS1	NM_004507	human	genbank	54_36p	-1	reviewed	missense	c.325	p.H109N	1	HMMPfam_Hus1	HMMPfam_Hus1	-	no_errors
INHBA	3624	hgsc.bcm.edu	36	7	41696287	41696288	+	In_Frame_Ins	INS	-	-	GTC	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	41696287	41696288	-	GTC	INS	INHBA	NM_002192	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.767_766	p.256in_frame_insR	1.000:1.000	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1"	-	no_errors
KEL	3792	hgsc.bcm.edu	36	7	142361733	142361733	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	142361733	142361733	C	T	SNP	KEL	NM_000420	human	genbank	54_36p	-1	reviewed	missense	c.676	p.D226N	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
KIAA1324L	222223	hgsc.bcm.edu	36	7	86380315	86380315	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	86380315	86380315	G	A	SNP	KIAA1324L	NM_152748	human	genbank	54_36p	-1	validated	missense	c.1153	p.H385Y	1	superfamily_Grow_fac_recept	"HMMPfam_NCD3G,superfamily_Grow_fac_recept,superfamily_Man6php_recept"	-	no_errors
KIAA1324L	222223	hgsc.bcm.edu	36	7	86394128	86394128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	86394128	86394128	C	T	SNP	KIAA1324L	NM_152748	human	genbank	54_36p	-1	validated	missense	c.410	p.R137Q	1	superfamily_Grow_fac_recept	"superfamily_Man6php_recept,superfamily_Grow_fac_recept,HMMPfam_NCD3G"	-	no_errors
KRIT1	889	hgsc.bcm.edu	36	7	91703779	91703779	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	91703779	91703779	G	T	SNP	KRIT1	NM_004912	human	genbank	54_36p	-1	validated	nonsense	c.369	p.Y123*	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	-	no_errors
LAMB1	3912	hgsc.bcm.edu	36	7	107386991	107386991	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	107386991	107386991	C	T	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.2629	p.D877N	0.91	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181"	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_Prefoldin"	-	no_errors
LAMB4	22798	hgsc.bcm.edu	36	7	107483411	107483411	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	107483411	107483411	G	T	SNP	LAMB4	NM_007356	human	genbank	54_36p	-1	validated	missense	c.3657	p.D1219E	0.03	NULL	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
LAMB4	22798	hgsc.bcm.edu	36	7	107535349	107535349	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	107535349	107535349	G	T	SNP	LAMB4	NM_007356	human	genbank	54_36p	-1	validated	missense	c.554	p.S185Y	0.24	"HMMPfam_Laminin_N,HMMSmart_SM00136"	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_SM00136,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin"	-	no_errors
LRRN3	54674	hgsc.bcm.edu	36	7	110550512	110550512	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	110550512	110550512	A	C	SNP	LRRN3	NM_001099658	human	genbank	54_36p	1	validated	missense	c.448	p.N150H	1	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1"	"superfamily_L domain-like,HMMSmart_SM00013,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
MDFIC	29969	hgsc.bcm.edu	36	7	114406913	114406913	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	114406913	114406913	G	C	SNP	MDFIC	ENST00000393486	human	ensembl	54_36p	1	known	missense	c.334	p.G112R	1	NULL	PatternScan_EGF_1	-	no_errors
MEOX2	4223	hgsc.bcm.edu	36	7	15618640	15618640	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	15618640	15618640	T	G	SNP	MEOX2	NM_005924	human	genbank	54_36p	-1	reviewed	missense	c.812	p.E271A	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
MEST	4232	hgsc.bcm.edu	36	7	129925345	129925345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	129925345	129925345	C	T	SNP	MEST	NM_002402	human	genbank	54_36p	1	reviewed	missense	c.469	p.L157F	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	-	no_errors
MET	4233	hgsc.bcm.edu	36	7	116223379	116223379	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	116223379	116223379	G	A	SNP	MET	NM_000245	human	genbank	54_36p	1	reviewed	missense	c.4138	p.D1380N	0.92	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MGAM	8972	hgsc.bcm.edu	36	7	141368613	141368613	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	141368613	141368613	G	A	SNP	MGAM	NM_004668	human	genbank	54_36p	1	reviewed	missense	c.787	p.V263M	0.98	NULL	"HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31"	-	no_errors
MLL3	58508	hgsc.bcm.edu	36	7	151504560	151504560	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	151504560	151504560	A	C	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.8911	p.S2971A	0.74	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL5	55904	hgsc.bcm.edu	36	7	104539850	104539850	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	104539850	104539850	T	A	SNP	MLL5	NM_018682	human	genbank	54_36p	1	reviewed	missense	c.4411	p.S1471T	0.94	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	-	no_errors
MOSPD3	64598	hgsc.bcm.edu	36	7	100049137	100049137	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	100049137	100049137	G	A	SNP	MOSPD3	NM_001040097	human	genbank	54_36p	1	reviewed	missense	c.383	p.R128H	0.99	HMMPfam_Motile_Sperm	"HMMPfam_Motile_Sperm,superfamily_PapD-like"	-	no_errors
MUC17	140453	hgsc.bcm.edu	36	7	100465763	100465763	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	100465763	100465763	C	G	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.4346	p.T1449S	0.01	NULL	"superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	-	no_errors
MUC17	140453	hgsc.bcm.edu	36	7	100483021	100483021	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	100483021	100483021	G	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	nonsense	c.13138	p.E4380*	0.02	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC3A	4584	hgsc.bcm.edu	36	7	100395604	100395604	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	100395604	100395604	G	A	SNP	MUC3A	XM_001725354	human	genbank	54_36p	1	model	missense	c.772	p.A258T	0.05	"HMMSmart_SM00181,superfamily_EGF/Laminin"	"superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	-	no_errors
NCRNA00174	285908	hgsc.bcm.edu	36	7	65479980	65479981	+	Frame_Shift_Ins	INS	-	-	GC	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	65479980	65479981	-	GC	INS	NCRNA00174	ENST00000324866	human	ensembl	54_36p	-1	known	frame_shift_ins	c.52_51	p.T17fs	0.000:0.000	NULL	NULL	-	no_errors
NOBOX	135935	hgsc.bcm.edu	36	7	143729244	143729244	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	143729244	143729244	G	C	SNP	NOBOX	NM_001080413	human	genbank	54_36p	-1	provisional	missense	c.672	p.N224K	0.01	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
NOD1	10392	hgsc.bcm.edu	36	7	30454487	30454487	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	30454487	30454487	T	G	SNP	NOD1	NM_006092	human	genbank	54_36p	-1	validated	missense	c.2237	p.K746T	1	superfamily_SSF52047	"superfamily_DEATH_like,HMMPfam_CARD,HMMPfam_NACHT,superfamily_SSF52047"	-	no_errors
NOM1	64434	hgsc.bcm.edu	36	7	156451859	156451859	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	156451859	156451859	T	A	SNP	NOM1	NM_138400	human	genbank	54_36p	1	provisional	splice_site	c.2166+2	e8+2	1	-	-	-	no_errors
NOS3	4846	hgsc.bcm.edu	36	7	150330273	150330273	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	150330273	150330273	T	C	SNP	NOS3	NM_000603	human	genbank	54_36p	1	validated	missense	c.1700	p.V567A	1	"superfamily_Flavoproteins,HMMPfam_Flavodoxin_1"	###############################################################################################################################################################################################################################################################	-	no_errors
NPC1L1	29881	hgsc.bcm.edu	36	7	44526890	44526890	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	44526890	44526890	T	C	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	silent	c.3135	p.L1045	0.98	HMMPfam_Patched	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
NRCAM	4897	hgsc.bcm.edu	36	7	107612115	107612115	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	107612115	107612115	A	G	SNP	NRCAM	NM_001037132	human	genbank	54_36p	-1	reviewed	missense	c.2215	p.Y739H	1	superfamily_Fibronectin type III	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
NRF1	4899	hgsc.bcm.edu	36	7	129137499	129137499	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	129137499	129137499	A	T	SNP	NRF1	NM_001040110	human	genbank	54_36p	1	reviewed	missense	c.815	p.Q272L	1	HMMPfam_Nrf1_DNA-bind	"HMMPfam_Nrf1_DNA-bind,HMMPfam_Nrf1_activ_bdg"	-	no_errors
NSUN5P2	260294	hgsc.bcm.edu	36	7	72058325	72058329	+	Frame_Shift_Del	DEL	GGTTC	GGTTC	-	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	GGTTC	GGTTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	72058325	72058329	GGTTC	-	DEL	NSUN5C	NM_001039487	human	genbank	54_36p	-1	validated	frame_shift_del	c.199_195	p.N66fs	1.000:1.000:1.000:1.000:1.000	"HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"(deletion:cds_exon[72058321,72058436])"	no_errors
NSUN5P2	260294	hgsc.bcm.edu	36	7	72058357	72058357	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	72058357	72058357	T	-	DEL	NSUN5C	NM_001039487	human	genbank	54_36p	-1	validated	frame_shift_del	c.167	p.K56fs	1	"HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"(deletion:cds_exon[72058321,72058436])"	no_errors
NUP205	23165	hgsc.bcm.edu	36	7	134909107	134909107	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	134909107	134909107	C	A	SNP	NUP205	NM_015135	human	genbank	54_36p	1	validated	missense	c.337	p.L113I	0.34	NULL	NULL	-	no_errors
NUPL2	11097	hgsc.bcm.edu	36	7	23206757	23206758	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	23206757	23206758	-	C	INS	NUPL2	NM_007342	human	genbank	54_36p	1	validated	frame_shift_ins	c.1140_1141	p.A380fs	0.000:0.000	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
PCLO	27445	hgsc.bcm.edu	36	7	82228628	82228628	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	82228628	82228628	G	A	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	missense	c.15125	p.S5042F	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	"superfamily_FYVE/PHD zinc finger,HMMPfam_zf-piccolo,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
PCOLCE	5118	hgsc.bcm.edu	36	7	100043349	100043350	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	100043349	100043350	-	C	INS	PCOLCE	NM_002593	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1166_1167	p.M392fs	0.996:0.941	"superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	-	no_errors
PDAP1	11333	hgsc.bcm.edu	36	7	98839005	98839005	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	98839005	98839005	C	-	DEL	PDAP1	NM_014891	human	genbank	54_36p	-1	validated	frame_shift_del	c.165	p.K56fs	1	NULL	HMMPfam_PP28	"(deletion:cds_exon[98838957,98839064])"	no_errors
PDAP1	11333	hgsc.bcm.edu	36	7	98839005	98839005	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	98839005	98839005	C	-	DEL	PDAP1	NM_014891	human	genbank	54_36p	-1	validated	frame_shift_del	c.165	p.K56fs	1	NULL	HMMPfam_PP28	"(deletion:cds_exon[98838957,98839064])"	no_errors
PIK3CG	5294	hgsc.bcm.edu	36	7	106296575	106296575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	106296575	106296575	G	T	SNP	PIK3CG	NM_002649	human	genbank	54_36p	1	reviewed	missense	c.1333	p.A445S	0.19	"HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
PILRB	29990	hgsc.bcm.edu	36	7	99795065	99795067	+	In_Frame_Del	DEL	CCT	CCT	-	rs5886120	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	CCT	CCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	99795065	99795067	CCT	-	DEL	PILRB	NM_013440	human	genbank	54_36p	1	reviewed	in_frame_del	c.624_626	p.L212in_frame_del	0.000:0.000:0.000	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"(deletion:cds_exon[99794896,99795096])"	no_errors
PION	54103	hgsc.bcm.edu	36	7	76788041	76788041	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	76788041	76788041	C	T	SNP	PION	NM_017439	human	genbank	54_36p	-1	validated	missense	c.2026	p.V676I	0.94	NULL	NULL	-	no_errors
PION	54103	hgsc.bcm.edu	36	7	76842310	76842310	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	76842310	76842310	C	T	SNP	PION	NM_017439	human	genbank	54_36p	-1	validated	splice_site	c.785+1	e11+1	0.99	-	-	-	no_errors
PKD1L1	168507	hgsc.bcm.edu	36	7	47819381	47819382	+	Frame_Shift_Del	DEL	AG	AG	-	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	47819381	47819382	AG	-	DEL	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.7209_7208	p.S2403fs	0.000:0.000	HMMPfam_PKD_channel	"HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel"	"(deletion:cds_exon[47819244,47819416])"	no_errors
PKD1L1	168507	hgsc.bcm.edu	36	7	47871376	47871376	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	47871376	47871376	A	G	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.4112	p.V1371A	0.01	NULL	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
PLEKHA8	84725	hgsc.bcm.edu	36	7	30061427	30061427	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	30061427	30061427	G	T	SNP	PLEKHA8	NM_032639	human	genbank	54_36p	1	provisional	missense	c.983	p.S328I	1	"superfamily_Glycolipid_transfer_prot,HMMPfam_GLTP"	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729,superfamily_Glycolipid_transfer_prot,HMMPfam_GLTP"	-	no_errors
PLXNA4	91584	hgsc.bcm.edu	36	7	131503749	131503749	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	131503749	131503749	C	G	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.4140	p.M1380I	1	"HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	-	no_errors
POLM	27434	hgsc.bcm.edu	36	7	44084929	44084929	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	44084929	44084929	G	C	SNP	POLM	NM_013284	human	genbank	54_36p	-1	validated	missense	c.649	p.L217V	1	"superfamily_DNApol_B_N_like,HMMSmart_POLXc"	"HMMSmart_BRCT,superfamily_BRCT,superfamily_DNApol_B_N_like,HMMSmart_POLXc,superfamily_DNA_pol_lambd_fingers_domain,HMMPfam_DNA_pol_lambd_f,superfamily_SSF81301,PatternScan_DNA_POLYMERASE_X"	-	no_errors
PON3	5446	hgsc.bcm.edu	36	7	94831193	94831193	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	94831193	94831193	G	C	SNP	PON3	NM_000940	human	genbank	54_36p	-1	reviewed	missense	c.613	p.L205V	0.71	"superfamily_Calcium-dependent phosphotriesterase,HMMPfam_Arylesterase"	"superfamily_Calcium-dependent phosphotriesterase,HMMPfam_Arylesterase"	-	no_errors
POP7	10248	hgsc.bcm.edu	36	7	100142479	100142479	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	100142479	100142479	G	A	SNP	POP7	NM_005837	human	genbank	54_36p	1	validated	silent	c.90	p.L30	0.99	NULL	"superfamily_AlbA-like,HMMPfam_Alba"	-	no_errors
PPP1R3A	5506	hgsc.bcm.edu	36	7	113305079	113305079	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	113305079	113305079	C	T	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.3304	p.V1102I	1	NULL	HMMPfam_CBM_21	-	no_errors
PPP1R9A	55607	hgsc.bcm.edu	36	7	94578512	94578512	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	7	94578512	94578512	C	G	SNP	PPP1R9A	NM_017650	human	genbank	54_36p	1	validated	missense	c.1401	p.F467L	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
PTPN12	5782	hgsc.bcm.edu	36	7	77004876	77004876	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	77004876	77004876	A	C	SNP	PTPN12	NM_002835	human	genbank	54_36p	1	reviewed	missense	c.77	p.D26A	1	superfamily_SSF52799	"superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPN12	5782	hgsc.bcm.edu	36	7	77085743	77085743	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	77085743	77085743	A	T	SNP	PTPN12	NM_002835	human	genbank	54_36p	1	reviewed	missense	c.950	p.N317I	0.96	NULL	"HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799"	-	no_errors
PTPN12	5782	hgsc.bcm.edu	36	7	77105966	77105966	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	77105966	77105966	A	G	SNP	PTPN12	NM_002835	human	genbank	54_36p	1	reviewed	missense	c.2263	p.T755A	0.98	NULL	"HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799"	-	no_errors
PTPRZ1	5803	hgsc.bcm.edu	36	7	121395259	121395259	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	121395259	121395259	A	T	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	missense	c.143	p.N48I	1	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
RELN	5649	hgsc.bcm.edu	36	7	102900523	102900523	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	102900523	102900523	C	T	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.10355	p.R3452K	1	NULL	"HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase"	-	no_errors
RELN	5649	hgsc.bcm.edu	36	7	102911424	102911424	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	102911424	102911424	C	T	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.10093	p.V3365I	0.99	NULL	"HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196"	-	no_errors
RELN	5649	hgsc.bcm.edu	36	7	103064116	103064116	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	103064116	103064116	A	G	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.2105	p.M702T	1	superfamily_SSF57196	"HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196"	-	no_errors
RSPH10B2	728194	hgsc.bcm.edu	36	7	6795811	6795811	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	6795811	6795811	G	A	SNP	RSPH10B2	NM_001099697	human	genbank	54_36p	1	provisional	missense	c.2035	p.A679T	0	NULL	"HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698"	-	no_errors
SAMD9	54809	hgsc.bcm.edu	36	7	92571191	92571191	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	92571191	92571191	T	G	SNP	SAMD9	NM_017654	human	genbank	54_36p	-1	validated	missense	c.2156	p.Q719P	0.74	NULL	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
SAMD9L	219285	hgsc.bcm.edu	36	7	92601456	92601456	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	92601456	92601456	G	A	SNP	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	nonsense	c.1765	p.R589*	0.02	NULL	superfamily_SAM/Pointed domain	-	no_errors
SAMD9L	219285	hgsc.bcm.edu	36	7	92603061	92603061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	92603061	92603061	C	T	SNP	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	missense	c.160	p.D54N	0.88	superfamily_SAM/Pointed domain	superfamily_SAM/Pointed domain	-	no_errors
SCIN	85477	hgsc.bcm.edu	36	7	12658046	12658046	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	12658046	12658046	A	C	SNP	SCIN	NM_033128	human	genbank	54_36p	1	validated	missense	c.1274	p.K425T	1	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin"	"superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
SCRN1	9805	hgsc.bcm.edu	36	7	29950282	29950282	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	29950282	29950282	A	G	SNP	SCRN1	NM_014766	human	genbank	54_36p	-1	reviewed	missense	c.380	p.L127S	1	NULL	NULL	-	no_errors
SEMA3A	10371	hgsc.bcm.edu	36	7	83478477	83478477	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	83478477	83478477	C	A	SNP	SEMA3A	NM_006080	human	genbank	54_36p	-1	reviewed	missense	c.883	p.V295L	1	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
SEMA3E	9723	hgsc.bcm.edu	36	7	82875639	82875639	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	82875639	82875639	G	A	SNP	SEMA3E	NM_012431	human	genbank	54_36p	-1	provisional	silent	c.651	p.D217	0.91	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
SLC12A9	56996	hgsc.bcm.edu	36	7	100292535	100292537	+	In_Frame_Del	DEL	CGG	CGG	-	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	CGG	CGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	100292535	100292537	CGG	-	DEL	SLC12A9	NM_020246	human	genbank	54_36p	1	validated	in_frame_del	c.558_560	p.G187in_frame_del	0.583:0.950:0.986	HMMPfam_AA_permease	HMMPfam_AA_permease	"(deletion:cds_exon[100292426,100292734])"	no_errors
SLC13A1	6561	hgsc.bcm.edu	36	7	122574465	122574465	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	122574465	122574465	C	T	SNP	SLC13A1	NM_022444	human	genbank	54_36p	-1	validated	missense	c.796	p.A266T	0.99	HMMPfam_Na_sulph_symp	"HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE"	-	no_errors
SLC26A4	5172	hgsc.bcm.edu	36	7	107129629	107129629	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	107129629	107129629	C	A	SNP	SLC26A4	NM_000441	human	genbank	54_36p	1	reviewed	missense	c.1925	p.S642Y	1	"superfamily_STAS,HMMPfam_STAS"	"PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
SLC26A5	375611	hgsc.bcm.edu	36	7	102806180	102806180	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	102806180	102806180	G	A	SNP	SLC26A5	NM_198999	human	genbank	54_36p	-1	validated	silent	c.1734	p.Y578	1	"HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa"	"PatternScan_SLC26A,HMMPfam_Sulfate_transp,HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa"	-	no_errors
SLC37A3	84255	hgsc.bcm.edu	36	7	139705029	139705029	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	139705029	139705029	T	A	SNP	SLC37A3	NM_207113	human	genbank	54_36p	-1	validated	missense	c.401	p.E134V	0.99	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SND1	27044	hgsc.bcm.edu	36	7	127315251	127315251	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	127315251	127315251	T	A	SNP	SND1	NM_014390	human	genbank	54_36p	1	validated	missense	c.1404	p.D468E	1	"superfamily_Staphylococal_nuclease_OB-fold,HMMPfam_SNase,HMMSmart_SNc"	"PatternScan_TNASE_1,superfamily_Staphylococal_nuclease_OB-fold,HMMSmart_SNc,HMMPfam_SNase,PatternScan_TNASE_2,HMMPfam_TUDOR,HMMSmart_TUDOR"	-	no_errors
SND1	27044	hgsc.bcm.edu	36	7	127514303	127514303	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	127514303	127514303	G	C	SNP	SND1	NM_014390	human	genbank	54_36p	1	validated	silent	c.2382	p.T794	0.99	"HMMPfam_TUDOR,superfamily_Staphylococal_nuclease_OB-fold"	"PatternScan_TNASE_1,PatternScan_TNASE_2,HMMSmart_TUDOR,HMMPfam_SNase,HMMSmart_SNc,HMMPfam_TUDOR,superfamily_Staphylococal_nuclease_OB-fold"	-	no_errors
SNX8	29886	hgsc.bcm.edu	36	7	2278112	2278112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	2278112	2278112	C	A	SNP	SNX8	NM_013321	human	genbank	54_36p	-1	provisional	missense	c.439	p.A147S	1	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain"	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain"	-	no_errors
SOSTDC1	25928	hgsc.bcm.edu	36	7	16468964	16468964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	16468964	16468964	C	T	SNP	SOSTDC1	NM_015464	human	genbank	54_36p	-1	reviewed	missense	c.355	p.G119R	0.97	HMMPfam_Sclerostin	HMMPfam_Sclerostin	-	no_errors
STAG3	10734	hgsc.bcm.edu	36	7	99617665	99617665	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	99617665	99617665	T	C	SNP	STAG3	NM_012447	human	genbank	54_36p	1	validated	silent	c.133	p.L45	0.03	NULL	"superfamily_ARM repeat,HMMPfam_STAG"	-	no_errors
SUMF2	25870	hgsc.bcm.edu	36	7	56099526	56099527	+	In_Frame_Ins	INS	-	-	AGT	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	56099526	56099527	-	AGT	INS	SUMF2	NM_015411	human	genbank	54_36p	1	reviewed	in_frame_ins	c.28_29	p.P10in_frame_insQS	0.000:0.000	NULL	"HMMPfam_DUF323,superfamily_C-type lectin-like"	-	no_errors
TBX20	57057	hgsc.bcm.edu	36	7	35208707	35208707	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	35208707	35208707	T	C	SNP	TBX20	NM_001077653	human	genbank	54_36p	-1	validated	missense	c.1204	p.I402V	1	NULL	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TBXAS1	6916	hgsc.bcm.edu	36	7	139308389	139308389	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	139308389	139308389	C	T	SNP	TBXAS1	NM_001061	human	genbank	54_36p	1	reviewed	missense	c.1025	p.A342V	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
TMEM130	222865	hgsc.bcm.edu	36	7	98284141	98284141	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	98284141	98284141	C	A	SNP	TMEM130	NM_152913	human	genbank	54_36p	-1	validated	splice_site	c.1119+1	e7+1	0.99	-	-	-	no_errors
TMEM130	222865	hgsc.bcm.edu	36	7	98290870	98290870	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	98290870	98290870	G	T	SNP	TMEM130	NM_152913	human	genbank	54_36p	-1	validated	silent	c.732	p.G244	1	NULL	superfamily_PKD domain	-	no_errors
TMEM176A	55365	hgsc.bcm.edu	36	7	150131718	150131718	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	150131718	150131718	C	A	SNP	TMEM176A	NM_018487	human	genbank	54_36p	1	validated	missense	c.420	p.F140L	0	HMMPfam_LR8	HMMPfam_LR8	-	no_errors
TRIM73	375593	hgsc.bcm.edu	36	7	74870941	74870941	+	Missense_Mutation	SNP	A	A	C	rs3095183	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	74870941	74870941	A	C	SNP	TRIM73	NM_198924	human	genbank	54_36p	1	provisional	missense	c.477	p.K159N	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX"	-	no_errors
TRRAP	8295	hgsc.bcm.edu	36	7	98414417	98414417	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	7	98414417	98414417	C	T	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	missense	c.8513	p.A2838V	1	"superfamily_ARM repeat,superfamily_Protein prenylyltransferase,HMMPfam_FAT"	"superfamily_ARM repeat,PatternScan_COPPER_BLUE,superfamily_Protein prenylyltransferase,HMMPfam_FAT,superfamily_TPR-like,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC"	-	no_errors
TRYX3	136541	hgsc.bcm.edu	36	7	141601463	141601463	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	141601463	141601463	T	A	SNP	uc003vxc.2	ENST00000304182	human	ensembl	54_36p	-1	known	missense	c.325	p.T109S	0	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS"	-	no_errors
TXNDC3	51314	hgsc.bcm.edu	36	7	37873982	37873982	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	37873982	37873982	G	A	SNP	TXNDC3	NM_016616	human	genbank	54_36p	1	validated	missense	c.775	p.E259K	0	superfamily_NDK	"PatternScan_NDP_KINASES,HMMPfam_Thioredoxin,superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1,superfamily_NDK,HMMSmart_NDK,HMMPfam_NDK"	-	no_errors
VIPR2	7434	hgsc.bcm.edu	36	7	158627967	158627967	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	158627967	158627967	T	A	SNP	VIPR2	NM_003382	human	genbank	54_36p	-1	validated	missense	c.83	p.H28L	1	superfamily_SSF111418	"superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF81321,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
WDR60	55112	hgsc.bcm.edu	36	7	158397111	158397111	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	158397111	158397111	G	C	SNP	WDR60	NM_018051	human	genbank	54_36p	1	validated	missense	c.1570	p.G524R	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
WIPI2	26100	hgsc.bcm.edu	36	7	5235840	5235840	+	Silent	SNP	A	A	G	rs34104542	byFrequency	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	5235840	5235840	A	G	SNP	WIPI2	NM_015610	human	genbank	54_36p	1	validated	silent	c.1197	p.T399	0.99	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	-	no_errors
WNT16	51384	hgsc.bcm.edu	36	7	120759114	120759115	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	120759114	120759115	-	G	INS	WNT16	NM_057168	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.493_494	p.C168fs	1.000:1.000	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
WNT2	7472	hgsc.bcm.edu	36	7	116747964	116747964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	116747964	116747964	C	T	SNP	WNT2	NM_003391	human	genbank	54_36p	-1	reviewed	missense	c.203	p.G68D	0.98	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
ZC3HAV1	56829	hgsc.bcm.edu	36	7	138383002	138383002	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	7	138383002	138383002	G	A	SNP	ZC3HAV1	NM_020119	human	genbank	54_36p	-1	reviewed	nonsense	c.2587	p.Q863*	0	"superfamily_ADP-ribosylation,HMMPfam_PARP"	"HMMPfam_zf-CCCH,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
ZCWPW1	55063	hgsc.bcm.edu	36	7	99852628	99852628	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	99852628	99852628	T	G	SNP	ZCWPW1	NM_017984	human	genbank	54_36p	-1	validated	missense	c.476	p.N159T	0.1	NULL	"HMMPfam_zf-CW,superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293"	-	no_errors
ZMIZ2	83637	hgsc.bcm.edu	36	7	44766684	44766684	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	44766684	44766684	C	G	SNP	ZMIZ2	NM_031449	human	genbank	54_36p	1	validated	missense	c.1207	p.P403A	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
ZMIZ2	83637	hgsc.bcm.edu	36	7	44770599	44770599	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	44770599	44770599	T	A	SNP	ZMIZ2	NM_031449	human	genbank	54_36p	1	validated	nonsense	c.1917	p.C639*	1	"HMMPfam_zf-MIZ,superfamily_RING/U-box"	"HMMPfam_zf-MIZ,superfamily_RING/U-box"	-	no_errors
ZNF277	11179	hgsc.bcm.edu	36	7	111745520	111745520	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	7	111745520	111745520	T	G	SNP	ZNF277	NM_021994	human	genbank	54_36p	1	validated	missense	c.513	p.F171L	1	NULL	"HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF789	285989	hgsc.bcm.edu	36	7	98919686	98919686	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	7	98919686	98919686	C	T	SNP	ZNF789	NM_213603	human	genbank	54_36p	1	validated	silent	c.249	p.S83	0	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF804B	219578	hgsc.bcm.edu	36	7	88801682	88801682	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	7	88801682	88801682	C	A	SNP	ZNF804B	NM_181646	human	genbank	54_36p	1	provisional	missense	c.1450	p.L484I	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
tcag7.1071	100130988	hgsc.bcm.edu	36	7	50151452	50151452	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	7	50151452	50151452	A	G	SNP	LOC100130988	XM_001713888	human	genbank	54_36p	1	model	missense	c.887	p.D296G	0.54	NULL	NULL	-	no_errors
ADAM2	2515	hgsc.bcm.edu	36	8	39732459	39732459	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	39732459	39732459	T	G	SNP	ADAM2	NM_001464	human	genbank	54_36p	-1	reviewed	missense	c.1742	p.H581P	0	"HMMSmart_SM00608,HMMPfam_ADAM_CR"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM9	8754	hgsc.bcm.edu	36	8	39048016	39048016	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	39048016	39048016	C	A	SNP	ADAM9	NM_003816	human	genbank	54_36p	1	reviewed	missense	c.1634	p.S545Y	1	"HMMSmart_SM00608,HMMPfam_ADAM_CR"	###############################################################################################################################################################################################################################################################	-	no_errors
ARFGEF1	10565	hgsc.bcm.edu	36	8	68286377	68286377	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	68286377	68286377	T	C	SNP	ARFGEF1	NM_006421	human	genbank	54_36p	-1	reviewed	missense	c.4714	p.I1572V	1	NULL	"superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981"	-	no_errors
ARFGEF1	10565	hgsc.bcm.edu	36	8	68366670	68366670	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	68366670	68366670	T	A	SNP	ARFGEF1	NM_006421	human	genbank	54_36p	-1	reviewed	missense	c.882	p.E294D	1	superfamily_ARM-type_fold	"HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_DUF1981,superfamily_ARM-type_fold"	-	no_errors
ASAP1	50807	hgsc.bcm.edu	36	8	131234209	131234209	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	131234209	131234209	C	A	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	missense	c.1035	p.R345S	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
ASPH	444	hgsc.bcm.edu	36	8	62713068	62713068	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	62713068	62713068	A	G	SNP	ASPH	NM_004318	human	genbank	54_36p	-1	validated	missense	c.881	p.I294T	0.38	"HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452"	"HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452,HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197"	-	no_errors
ATAD2	29028	hgsc.bcm.edu	36	8	124409656	124409656	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	124409656	124409656	A	T	SNP	ATAD2	NM_014109	human	genbank	54_36p	-1	reviewed	missense	c.3823	p.S1275T	0	NULL	"HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
BLK	640	hgsc.bcm.edu	36	8	11452930	11452930	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	11452930	11452930	C	T	SNP	BLK	NM_001715	human	genbank	54_36p	1	validated	missense	c.1003	p.P335S	0.15	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
BMP1	649	hgsc.bcm.edu	36	8	22120354	22120354	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	22120354	22120354	C	T	SNP	BMP1	NM_006129	human	genbank	54_36p	1	reviewed	missense	c.2276	p.T759I	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	###############################################################################################################################################################################################################################################################	-	no_errors
C8orf4	56892	hgsc.bcm.edu	36	8	40130275	40130275	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	40130275	40130275	C	T	SNP	C8orf4	NM_020130	human	genbank	54_36p	1	reviewed	missense	c.67	p.H23Y	1	NULL	NULL	-	no_errors
C8orf76	84933	hgsc.bcm.edu	36	8	124301591	124301591	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	124301591	124301591	C	A	SNP	C8orf76	NM_032847	human	genbank	54_36p	-1	predicted	missense	c.1076	p.R359I	0.91	NULL	superfamily_SSF48452	-	no_errors
C8orf80	389643	hgsc.bcm.edu	36	8	27942821	27942821	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	27942821	27942821	C	T	SNP	C8orf80	NM_001010906	human	genbank	54_36p	-1	predicted	missense	c.2035	p.G679S	0.99	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDH17	1015	hgsc.bcm.edu	36	8	95227398	95227398	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	95227398	95227398	G	T	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	missense	c.2101	p.P701T	0	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
CDH17	1015	hgsc.bcm.edu	36	8	95276051	95276051	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	95276051	95276051	A	T	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	silent	c.39	p.L13	0.53	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
CHRAC1	54108	hgsc.bcm.edu	36	8	141590819	141590819	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	141590819	141590819	G	A	SNP	CHRAC1	NM_017444	human	genbank	54_36p	1	validated	silent	c.39	p.E13	0.48	NULL	"HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold"	-	no_errors
CHRNA2	1135	hgsc.bcm.edu	36	8	27383391	27383392	+	Frame_Shift_Ins	INS	-	-	GGGTGGA	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	27383391	27383392	-	GGGTGGA	INS	CHRNA2	NM_000742	human	genbank	54_36p	-1	validated	frame_shift_ins	c.98_97	p.P33fs	0.000:0.000	NULL	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
CHRNA6	8973	hgsc.bcm.edu	36	8	42730211	42730211	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	42730211	42730211	C	A	SNP	CHRNA6	NM_004198	human	genbank	54_36p	-1	provisional	nonsense	c.1288	p.E430*	0.81	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
CLN8	2055	hgsc.bcm.edu	36	8	1707013	1707013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	1707013	1707013	G	A	SNP	CLN8	NM_018941	human	genbank	54_36p	1	reviewed	missense	c.386	p.R129Q	0.93	"HMMSmart_TLC,HMMPfam_TRAM_LAG1_CLN8"	"HMMSmart_TLC,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
CLU	1191	hgsc.bcm.edu	36	8	27518486	27518486	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	27518486	27518486	G	A	SNP	CLU	NM_001831	human	genbank	54_36p	-1	validated	missense	c.857	p.P286L	0	"HMMPfam_Clusterin,HMMSmart_CLa"	"HMMPfam_Clusterin,HMMSmart_CLb,PatternScan_CLUSTERIN_1,HMMSmart_CLa,PatternScan_CLUSTERIN_2"	-	no_errors
CNGB3	54714	hgsc.bcm.edu	36	8	87748405	87748405	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	87748405	87748405	C	T	SNP	CNGB3	NM_019098	human	genbank	54_36p	-1	validated	missense	c.716	p.R239H	1	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
COL14A1	7373	hgsc.bcm.edu	36	8	121291214	121291214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	121291214	121291214	G	A	SNP	COL14A1	NM_021110	human	genbank	54_36p	1	validated	missense	c.1360	p.V454M	1	"HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
COL14A1	7373	hgsc.bcm.edu	36	8	121329057	121329057	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	121329057	121329057	T	C	SNP	COL14A1	NM_021110	human	genbank	54_36p	1	validated	missense	c.2504	p.L835S	0.94	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL14A1	7373	hgsc.bcm.edu	36	8	121379005	121379005	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	121379005	121379005	C	A	SNP	COL14A1	NM_021110	human	genbank	54_36p	1	validated	silent	c.4311	p.G1437	0.7	superfamily_Concanavalin A-like lectins/glucanases	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL22A1	169044	hgsc.bcm.edu	36	8	139705180	139705180	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	139705180	139705180	T	C	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.3748	p.K1250E	0.97	HMMPfam_Collagen	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
COL22A1	169044	hgsc.bcm.edu	36	8	139772290	139772290	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	139772290	139772290	C	T	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.2764	p.G922R	0.41	HMMPfam_Collagen	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL22A1	169044	hgsc.bcm.edu	36	8	139959730	139959730	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	139959730	139959730	C	T	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.103	p.V35I	1	superfamily_vWA-like	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COMMD5	28991	hgsc.bcm.edu	36	8	146047509	146047509	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	146047509	146047509	C	T	SNP	COMMD5	NM_001081003	human	genbank	54_36p	-1	validated	missense	c.19	p.A7T	0.74	NULL	HMMPfam_HCaRG	-	no_errors
COPS5	10987	hgsc.bcm.edu	36	8	68136660	68136660	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	68136660	68136660	C	A	SNP	COPS5	NM_006837	human	genbank	54_36p	-1	reviewed	silent	c.126	p.A42	1	NULL	"HMMPfam_Mov34,superfamily_SSF102712,HMMSmart_JAB_MPN"	-	no_errors
CRISPLD1	83690	hgsc.bcm.edu	36	8	76087259	76087259	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	76087259	76087259	T	A	SNP	CRISPLD1	NM_031461	human	genbank	54_36p	1	validated	missense	c.295	p.W99R	1	"superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP"	"superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,PatternScan_CRISP_2,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL"	-	no_errors
CSMD1	64478	hgsc.bcm.edu	36	8	3250958	3250958	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	3250958	3250958	T	A	SNP	CSMD1	ENST00000335551	human	ensembl	54_36p	-1	known	missense	c.725	p.E242V	1	"superfamily_Complement control module/SCR domain,superfamily_Spermadhesin CUB domain"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,PatternScan_GLYCOSYL_HYDROL_F10"	-	no_start_codon
CSMD1	64478	hgsc.bcm.edu	36	8	3254406	3254406	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	3254406	3254406	C	-	DEL	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	frame_shift_del	c.1694	p.S565fs	0.92	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	"(deletion:cds_exon[3254352,3254535])"	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CSPP1	79848	hgsc.bcm.edu	36	8	68268328	68268329	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	68268328	68268329	-	G	INS	CSPP1	NM_001077204	human	genbank	54_36p	1	validated	frame_shift_ins	c.3496_3497	p.V1167fs	1.000:1.000	NULL	NULL	-	no_errors
CTHRC1	115908	hgsc.bcm.edu	36	8	104459599	104459599	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	104459599	104459599	G	C	SNP	CTHRC1	NM_138455	human	genbank	54_36p	1	provisional	missense	c.541	p.G181R	1	NULL	HMMPfam_Collagen	-	no_errors
CYC1	1537	hgsc.bcm.edu	36	8	145223514	145223515	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	145223514	145223515	CT	-	DEL	CYC1	NM_001916	human	genbank	54_36p	1	validated	frame_shift_del	c.651_652	p.Y218fs	1.000:1.000	"superfamily_Cytochrome c,HMMPfam_Cytochrom_C1"	"superfamily_Cytochrome c,HMMPfam_Cytochrom_C1,superfamily_Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) transmembrane anchor"	"(deletion:cds_exon[145223475,145223635])"	no_errors
CYP11B2	1585	hgsc.bcm.edu	36	8	143993485	143993485	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	143993485	143993485	T	-	DEL	CYP11B2	NM_000498	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.574	p.I192fs	0.99	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	"(deletion:cds_exon[143993464,143993663])"	no_errors
CYP7B1	9420	hgsc.bcm.edu	36	8	65690838	65690838	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	65690838	65690838	C	T	SNP	CYP7B1	NM_004820	human	genbank	54_36p	-1	reviewed	missense	c.814	p.E272K	1	superfamily_Cytochrome P450	"superfamily_Cytochrome P450,HMMPfam_p450"	-	no_errors
DDHD2	23259	hgsc.bcm.edu	36	8	38229450	38229450	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	38229450	38229450	T	G	SNP	DDHD2	NM_015214	human	genbank	54_36p	1	provisional	missense	c.1671	p.F557L	1	HMMPfam_DDHD	"HMMPfam_WWE,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain,HMMPfam_DDHD"	-	no_errors
DEFB105B	504180	hgsc.bcm.edu	36	8	7332663	7332663	+	Missense_Mutation	SNP	T	T	A	rs62639778	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	7332663	7332663	T	A	SNP	DEFB105B	NM_001040703	human	genbank	54_36p	1	reviewed	missense	c.11	p.I4N	0	NULL	HMMPfam_Defensin_beta	-	no_errors
DLC1	10395	hgsc.bcm.edu	36	8	12992135	12992136	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	12992135	12992136	-	T	INS	DLC1	NM_182643	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.4071_4070	p.K1358fs	1.000:1.000	"superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	"HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
DLC1	10395	hgsc.bcm.edu	36	8	12992326	12992326	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	12992326	12992326	G	A	SNP	DLC1	NM_182643	human	genbank	54_36p	-1	reviewed	missense	c.3880	p.R1294C	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,HMMPfam_SAM_2,superfamily_Bet v1-like"	-	no_errors
DOK2	9046	hgsc.bcm.edu	36	8	21823005	21823006	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	21823005	21823006	-	A	INS	DOK2	NM_003974	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1002_1001	p.E334fs	0.930:0.930	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
EIF3E	3646	hgsc.bcm.edu	36	8	109284401	109284401	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	109284401	109284401	T	-	DEL	EIF3E	NM_001568	human	genbank	54_36p	-1	validated	frame_shift_del	c.1286	p.N429fs	1	NULL	"HMMPfam_eIF3_N,HMMPfam_PCI,HMMSmart_SM00088,superfamily_Winged helix DNA-binding domain"	"(deletion:cds_exon[109284388,109284522])"	no_errors
EIF3E	3646	hgsc.bcm.edu	36	8	109284401	109284401	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	109284401	109284401	T	A	SNP	EIF3E	NM_001568	human	genbank	54_36p	-1	validated	missense	c.1286	p.N429I	1	NULL	"HMMPfam_PCI,HMMSmart_SM00088,HMMPfam_eIF3_N,superfamily_Winged helix DNA-binding domain"	-	no_errors
ENPP2	5168	hgsc.bcm.edu	36	8	120665457	120665457	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	120665457	120665457	C	T	SNP	ENPP2	NM_006209	human	genbank	54_36p	-1	reviewed	missense	c.1537	p.V513I	1	"superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest"	"HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest,superfamily_His-Me finger endonucleases,HMMSmart_SM00477,HMMPfam_Endonuclease_NS"	-	no_errors
ENTPD4	9583	hgsc.bcm.edu	36	8	23361322	23361322	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	23361322	23361322	G	A	SNP	ENTPD4	NM_004901	human	genbank	54_36p	-1	validated	silent	c.228	p.D76	1	NULL	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
EXTL3	2137	hgsc.bcm.edu	36	8	28630037	28630038	+	In_Frame_Ins	INS	-	-	CCATGT	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	28630037	28630038	-	CCATGT	INS	EXTL3	NM_001440	human	genbank	54_36p	1	provisional	in_frame_ins	c.542_543	p.182in_frame_insHV	1.000:0.992	NULL	"HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64"	-	no_errors
EYA1	2138	hgsc.bcm.edu	36	8	72291551	72291551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	72291551	72291551	C	A	SNP	EYA1	NM_000503	human	genbank	54_36p	-1	reviewed	missense	c.1290	p.W430C	1	HMMPfam_Hydrolase	HMMPfam_Hydrolase	-	no_errors
FABP4	2167	hgsc.bcm.edu	36	8	82553699	82553699	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	82553699	82553699	C	T	SNP	FABP4	NM_001442	human	genbank	54_36p	-1	reviewed	missense	c.355	p.V119I	0.96	"superfamily_Lipocalins,HMMPfam_Lipocalin"	"superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP"	-	no_errors
FAM160B2	64760	hgsc.bcm.edu	36	8	22011997	22011998	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	22011997	22011998	-	A	INS	FAM160B2	ENST00000289921	human	ensembl	54_36p	1	known	frame_shift_ins	c.886_887	p.H296fs	0.941:0.993	HMMPfam_RAI16-like	HMMPfam_RAI16-like	-	no_errors
FAM82B	51115	hgsc.bcm.edu	36	8	87567829	87567829	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	87567829	87567829	C	T	SNP	FAM82B	NM_016033	human	genbank	54_36p	-1	validated	silent	c.495	p.K165	1	superfamily_Prenyl_trans	superfamily_Prenyl_trans	-	no_errors
FBXO25	26260	hgsc.bcm.edu	36	8	408740	408740	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	408740	408740	C	A	SNP	FBXO25	NM_183421	human	genbank	54_36p	1	reviewed	missense	c.1040	p.A347D	0.89	NULL	"HMMPfam_F-box,superfamily_F-box domain"	-	no_errors
FER1L6	654463	hgsc.bcm.edu	36	8	125116842	125116842	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	125116842	125116842	C	T	SNP	FER1L6	NM_001039112	human	genbank	54_36p	1	validated	silent	c.2430	p.G810	0	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB"	-	no_errors
FGFR1	2260	hgsc.bcm.edu	36	8	38394953	38394953	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	38394953	38394953	G	A	SNP	FGFR1	NM_023110	human	genbank	54_36p	-1	reviewed	silent	c.1380	p.V460	1	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
FLJ43860	389690	hgsc.bcm.edu	36	8	142545775	142545775	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	142545775	142545775	G	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.2393	p.T798N	0.01	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	pseudogene
FZD3	7976	hgsc.bcm.edu	36	8	28441484	28441484	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	28441484	28441484	G	C	SNP	FZD3	NM_017412	human	genbank	54_36p	1	reviewed	missense	c.1288	p.V430L	1	HMMPfam_Frizzled	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled"	-	no_errors
GSDMC	56169	hgsc.bcm.edu	36	8	130844119	130844119	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	130844119	130844119	G	C	SNP	GSDMC	NM_031415	human	genbank	54_36p	-1	validated	missense	c.611	p.A204G	0	HMMPfam_Gasdermin	HMMPfam_Gasdermin	-	no_errors
HAS2	3037	hgsc.bcm.edu	36	8	122710201	122710201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	122710201	122710201	C	A	SNP	HAS2	NM_005328	human	genbank	54_36p	-1	reviewed	missense	c.561	p.W187C	1	superfamily_SSF53448	"superfamily_SSF53448,HMMPfam_Glycos_transf_2"	-	no_errors
HOOK3	84376	hgsc.bcm.edu	36	8	42933554	42933554	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	42933554	42933554	A	C	SNP	HOOK3	NM_032410	human	genbank	54_36p	1	validated	silent	c.555	p.L185	0.99	HMMPfam_HOOK	HMMPfam_HOOK	-	no_errors
KIAA0196	9897	hgsc.bcm.edu	36	8	126149123	126149123	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	126149123	126149123	G	A	SNP	KIAA0196	NM_014846	human	genbank	54_36p	-1	validated	missense	c.1171	p.R391C	1	HMMPfam_Strumpellin	HMMPfam_Strumpellin	-	no_errors
KIAA1429	25962	hgsc.bcm.edu	36	8	95577260	95577260	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	95577260	95577260	C	T	SNP	KIAA1429	NM_015496	human	genbank	54_36p	-1	validated	silent	c.4419	p.L1473	1	NULL	NULL	-	no_errors
KIAA1967	57805	hgsc.bcm.edu	36	8	22531809	22531809	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	22531809	22531809	C	G	SNP	KIAA1967	NM_021174	human	genbank	54_36p	1	validated	silent	c.2076	p.P692	1	NULL	NULL	-	no_errors
LACTB2	51110	hgsc.bcm.edu	36	8	71715796	71715796	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	71715796	71715796	T	C	SNP	LACTB2	NM_016027	human	genbank	54_36p	-1	validated	silent	c.636	p.Q212	0.39	superfamily_SSF56281	"superfamily_SSF56281,HMMPfam_Lactamase_B"	-	no_errors
LYPD2	137797	hgsc.bcm.edu	36	8	143829479	143829479	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	143829479	143829479	C	T	SNP	LYPD2	NM_205545	human	genbank	54_36p	-1	provisional	missense	c.170	p.R57Q	0.96	"superfamily_SSF57302,HMMSmart_LU,PatternScan_LY6_UPAR,HMMPfam_UPAR_LY6"	"superfamily_SSF57302,HMMSmart_LU,PatternScan_LY6_UPAR,HMMPfam_UPAR_LY6"	-	no_errors
MAK16	84549	hgsc.bcm.edu	36	8	33466052	33466052	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	33466052	33466052	G	A	SNP	MAK16	NM_032509	human	genbank	54_36p	1	validated	missense	c.245	p.R82Q	1	HMMPfam_Mak16	HMMPfam_Mak16	-	no_errors
MAK16	84549	hgsc.bcm.edu	36	8	33472621	33472621	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	33472621	33472621	C	T	SNP	MAK16	NM_032509	human	genbank	54_36p	1	validated	missense	c.467	p.A156V	1	HMMPfam_Mak16	HMMPfam_Mak16	-	no_errors
MCM4	4173	hgsc.bcm.edu	36	8	49045019	49045019	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	49045019	49045019	G	A	SNP	MCM4	NM_005914	human	genbank	54_36p	1	reviewed	missense	c.1283	p.R428H	1	HMMSmart_MCM	"superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1"	-	no_errors
MMP16	4325	hgsc.bcm.edu	36	8	89198034	89198034	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	89198034	89198034	T	A	SNP	MMP16	NM_005941	human	genbank	54_36p	-1	reviewed	nonsense	c.901	p.R301*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MTDH	92140	hgsc.bcm.edu	36	8	98800510	98800510	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	98800510	98800510	A	G	SNP	MTDH	NM_178812	human	genbank	54_36p	1	validated	missense	c.1438	p.T480A	1	NULL	NULL	-	no_errors
MTERFD1	51001	hgsc.bcm.edu	36	8	97320977	97320977	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	97320977	97320977	A	G	SNP	MTERFD1	NM_015942	human	genbank	54_36p	-1	provisional	missense	c.1172	p.V391A	1	HMMPfam_mTERF	"HMMPfam_mTERF,HMMSmart_SM00733"	-	no_errors
MTSS1	9788	hgsc.bcm.edu	36	8	125649854	125649854	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	125649854	125649854	T	C	SNP	MTSS1	NM_014751	human	genbank	54_36p	-1	validated	missense	c.565	p.I189V	1	HMMPfam_IMD	"HMMPfam_IMD,HMMPfam_WH2"	-	no_errors
MYST3	7994	hgsc.bcm.edu	36	8	41920632	41920632	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	41920632	41920632	T	G	SNP	MYST3	NM_001099412	human	genbank	54_36p	-1	validated	missense	c.2019	p.E673D	1	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_MOZ_SAS"	"HMMSmart_H15,superfamily_SSF46785,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING,PatternScan_ZF_PHD_1,superfamily_FYVE_PHD_ZnF,superfamily_Acyl_CoA_acyltransferase,HMMPfam_MOZ_SAS"	-	no_errors
NDRG1	10397	hgsc.bcm.edu	36	8	134338247	134338247	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	134338247	134338247	G	A	SNP	NDRG1	NM_006096	human	genbank	54_36p	-1	reviewed	silent	c.492	p.N164	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Ndr"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Ndr,PatternScan_PHOSPHOPANTETHEINE"	-	no_errors
NDRG1	10397	hgsc.bcm.edu	36	8	134365688	134365688	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	134365688	134365688	C	A	SNP	NDRG1	NM_006096	human	genbank	54_36p	-1	reviewed	missense	c.49	p.V17L	1	NULL	"HMMPfam_Ndr,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases"	-	no_errors
NRG1	3084	hgsc.bcm.edu	36	8	32625385	32625385	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	32625385	32625385	C	A	SNP	NRG1	NM_013959	human	genbank	54_36p	1	reviewed	missense	c.607	p.P203T	1	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1"	-	no_errors
NSMAF	8439	hgsc.bcm.edu	36	8	59670733	59670733	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	59670733	59670733	G	A	SNP	NSMAF	NM_003580	human	genbank	54_36p	-1	reviewed	missense	c.1832	p.T611I	0.2	superfamily_WD40_like	"PatternScan_WD_REPEATS_1,HMMPfam_GRAM,HMMSmart_GRAM,superfamily_SSF50729,superfamily_Beige_BEACH,HMMPfam_Beach,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	-	no_errors
NSMCE2	286053	hgsc.bcm.edu	36	8	126439178	126439178	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	126439178	126439178	A	T	SNP	NSMCE2	NM_173685	human	genbank	54_36p	1	validated	missense	c.562	p.T188S	1	superfamily_SSF57850	superfamily_SSF57850	-	no_errors
ODF1	4956	hgsc.bcm.edu	36	8	103641909	103641909	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	103641909	103641909	T	C	SNP	ODF1	NM_024410	human	genbank	54_36p	1	reviewed	missense	c.374	p.I125T	0.99	NULL	superfamily_HSP20_chap	-	no_errors
OTUD6B	51633	hgsc.bcm.edu	36	8	92151782	92151782	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	92151782	92151782	G	T	SNP	OTUD6B	NM_016023	human	genbank	54_36p	1	validated	silent	c.84	p.L28	0.18	NULL	"superfamily_Cysteine proteinases,HMMPfam_OTU"	-	no_errors
PHF20L1	51105	hgsc.bcm.edu	36	8	133876184	133876184	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	133876184	133876184	T	C	SNP	PHF20L1	NM_016018	human	genbank	54_36p	1	validated	silent	c.279	p.V93	1	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMSmart_SM00743"	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMSmart_SM00743,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
PINX1	54984	hgsc.bcm.edu	36	8	10660825	10660825	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	10660825	10660825	A	C	SNP	PINX1	NM_017884	human	genbank	54_36p	-1	provisional	missense	c.483	p.S161R	0	NULL	"HMMSmart_SM00443,HMMPfam_G-patch"	-	no_errors
PKHD1L1	93035	hgsc.bcm.edu	36	8	110529723	110529723	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	110529723	110529723	G	-	DEL	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	frame_shift_del	c.5952	p.T1985fs	0.99	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG"	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like"	"(deletion:cds_exon[110529548,110529796])"	no_errors
PKIA	5569	hgsc.bcm.edu	36	8	79673225	79673225	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	79673225	79673225	A	C	SNP	PKIA	NM_006823	human	genbank	54_36p	1	reviewed	silent	c.51	p.T17	1	HMMPfam_PKI	HMMPfam_PKI	-	no_errors
POLB	5423	hgsc.bcm.edu	36	8	42325742	42325742	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	42325742	42325742	G	A	SNP	POLB	NM_002690	human	genbank	54_36p	1	provisional	missense	c.238	p.G80R	1	"superfamily_DNApol_B_N_like,HMMSmart_POLXc"	"superfamily_DNApol_B_N_like,HMMSmart_POLXc,HMMSmart_HhH1,superfamily_DNA_pol_lambd_fingers_domain,HMMPfam_DNA_pol_lambd_f,superfamily_SSF81301,PatternScan_DNA_POLYMERASE_X"	-	no_errors
PRDM14	63978	hgsc.bcm.edu	36	8	71130158	71130158	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	71130158	71130158	A	G	SNP	PRDM14	NM_024504	human	genbank	54_36p	-1	validated	silent	c.1419	p.S473	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_SET,superfamily_SSF82199,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PREX2	80243	hgsc.bcm.edu	36	8	69168445	69168445	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	69168445	69168445	C	A	SNP	PREX2	NM_024870	human	genbank	54_36p	1	validated	missense	c.2302	p.L768I	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PREX2	80243	hgsc.bcm.edu	36	8	69171884	69171884	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	8	69171884	69171884	A	T	SNP	PREX2	NM_024870	human	genbank	54_36p	1	validated	missense	c.2447	p.H816L	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PRKDC	5591	hgsc.bcm.edu	36	8	48934837	48934837	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	48934837	48934837	G	A	SNP	PRKDC	NM_001081640	human	genbank	54_36p	-1	validated	nonsense	c.6094	p.Q2032*	1	NULL	"superfamily_ARM repeat,HMMPfam_HEAT,PatternScan_SRP54"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PRKDC	5591	hgsc.bcm.edu	36	8	48956613	48956613	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	48956613	48956613	T	G	SNP	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	missense	c.4981	p.N1661H	1	superfamily_ARM repeat	"HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
PSD3	23362	hgsc.bcm.edu	36	8	18458108	18458108	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	18458108	18458108	T	A	SNP	PSD3	NM_015310	human	genbank	54_36p	-1	validated	missense	c.2819	p.K940M	1	NULL	"HMMSmart_Sec7,HMMPfam_Sec7,superfamily_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
PSD3	23362	hgsc.bcm.edu	36	8	18474377	18474377	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	18474377	18474377	C	T	SNP	PSD3	NM_015310	human	genbank	54_36p	-1	validated	missense	c.2725	p.G909S	1	NULL	"HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
PSD3	23362	hgsc.bcm.edu	36	8	18706348	18706348	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	18706348	18706348	A	G	SNP	PSD3	NM_015310	human	genbank	54_36p	-1	validated	missense	c.1874	p.F625S	1	"HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7"	"HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
PSD3	23362	hgsc.bcm.edu	36	8	18773895	18773895	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	18773895	18773895	G	A	SNP	PSD3	NM_015310	human	genbank	54_36p	-1	validated	silent	c.759	p.L253	0.01	NULL	"HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
PTK2	5747	hgsc.bcm.edu	36	8	141898209	141898209	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	141898209	141898209	C	A	SNP	PTK2	NM_005607	human	genbank	54_36p	-1	reviewed	silent	c.807	p.L269	1	"HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	"HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FERM_2,HMMPfam_Focal_AT,superfamily_Focal_AT"	-	no_errors
PTK2B	2185	hgsc.bcm.edu	36	8	27349753	27349753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	27349753	27349753	G	C	SNP	PTK2B	NM_004103	human	genbank	54_36p	1	reviewed	missense	c.1312	p.E438Q	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	###############################################################################################################################################################################################################################################################	-	no_errors
PURG	29942	hgsc.bcm.edu	36	8	31009041	31009042	+	Frame_Shift_Del	DEL	AA	AA	-	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	31009041	31009042	AA	-	DEL	PURG	NM_013357	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.800_799	p.F267fs	1.000:1.000	"HMMPfam_PurA,HMMSmart_SM00712"	"HMMPfam_PurA,HMMSmart_SM00712"	"(deletion:cds_exon[31008797,31009840])"	no_errors
PXDNL	137902	hgsc.bcm.edu	36	8	52395062	52395062	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	52395062	52395062	G	T	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	missense	c.4334	p.T1445N	0.79	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1"	###############################################################################################################################################################################################################################################################	-	no_errors
PXDNL	137902	hgsc.bcm.edu	36	8	52498750	52498750	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	52498750	52498750	T	C	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	missense	c.1733	p.Y578C	0.75	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
RBM12B	389677	hgsc.bcm.edu	36	8	94815321	94815321	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	94815321	94815321	C	-	DEL	RBM12B	NM_203390	human	genbank	54_36p	-1	validated	frame_shift_del	c.2494	p.E832fs	0.56	NULL	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1"	"(deletion:cds_exon[94814809,94817814])"	no_errors
RBM12B	389677	hgsc.bcm.edu	36	8	94815805	94815805	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	94815805	94815805	T	G	SNP	RBM12B	NM_203390	human	genbank	54_36p	-1	validated	silent	c.2010	p.P670	0	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
RP1	6101	hgsc.bcm.edu	36	8	55703740	55703740	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	55703740	55703740	G	A	SNP	RP1	ENST00000220676	human	ensembl	54_36p	1	known	missense	c.4745	p.C1582Y	0	NULL	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX"	-	no_errors
RP1L1	94137	hgsc.bcm.edu	36	8	10501886	10501886	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	10501886	10501886	G	C	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.7132	p.L2378V	0	NULL	"superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen"	-	no_errors
RRM2B	50484	hgsc.bcm.edu	36	8	103313684	103313684	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	103313684	103313684	T	C	SNP	RRM2B	NM_015713	human	genbank	54_36p	-1	validated	missense	c.73	p.S25G	0.04	NULL	"superfamily_Ferritin-like,HMMPfam_Ribonuc_red_sm,PatternScan_RIBORED_SMALL"	-	no_errors
SAMD12	401474	hgsc.bcm.edu	36	8	119461087	119461087	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	119461087	119461087	A	C	SNP	SAMD12	NM_207506	human	genbank	54_36p	-1	validated	missense	c.356	p.L119R	1	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2"	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2"	-	no_errors
SLC18A1	6570	hgsc.bcm.edu	36	8	20076209	20076209	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	20076209	20076209	G	C	SNP	SLC18A1	NM_003053	human	genbank	54_36p	-1	validated	missense	c.574	p.L192V	0.67	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SLC26A7	115111	hgsc.bcm.edu	36	8	92424831	92424831	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	92424831	92424831	A	T	SNP	SLC26A7	NM_134266	human	genbank	54_36p	1	reviewed	silent	c.1101	p.G367	0.99	HMMPfam_Sulfate_transp	"HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
SLC30A8	169026	hgsc.bcm.edu	36	8	118239252	118239252	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	118239252	118239252	C	T	SNP	SLC30A8	NM_173851	human	genbank	54_36p	1	validated	missense	c.560	p.A187V	0.81	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
SLC7A2	6542	hgsc.bcm.edu	36	8	17445394	17445394	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	17445394	17445394	C	A	SNP	SLC7A2	NM_003046	human	genbank	54_36p	1	validated	missense	c.287	p.A96D	0.98	NULL	HMMPfam_AA_permease	-	no_errors
SNTG1	54212	hgsc.bcm.edu	36	8	51611868	51611868	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	51611868	51611868	C	T	SNP	SNTG1	NM_018967	human	genbank	54_36p	1	reviewed	silent	c.627	p.I209	1	"HMMSmart_SM00233,superfamily_PH domain-like"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
SNTG1	54212	hgsc.bcm.edu	36	8	51628207	51628207	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	51628207	51628207	G	T	SNP	SNTG1	NM_018967	human	genbank	54_36p	1	reviewed	missense	c.725	p.G242V	1	"HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
SNX16	64089	hgsc.bcm.edu	36	8	82898604	82898604	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	82898604	82898604	C	G	SNP	SNX16	NM_022133	human	genbank	54_36p	-1	reviewed	missense	c.589	p.A197P	1	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	-	no_errors
ST18	9705	hgsc.bcm.edu	36	8	53188438	53188438	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	53188438	53188438	T	A	SNP	ST18	NM_014682	human	genbank	54_36p	-1	validated	missense	c.3017	p.E1006V	1	NULL	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1"	-	no_errors
STMN4	81551	hgsc.bcm.edu	36	8	27153586	27153586	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	27153586	27153586	G	A	SNP	STMN4	NM_030795	human	genbank	54_36p	-1	provisional	missense	c.410	p.A137V	1	"superfamily_Stathmin,HMMPfam_Stathmin"	"superfamily_Stathmin,HMMPfam_Stathmin,PatternScan_STATHMIN_1,PatternScan_STATHMIN_2"	-	no_errors
TACC1	6867	hgsc.bcm.edu	36	8	38796364	38796364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	38796364	38796364	G	A	SNP	TACC1	NM_006283	human	genbank	54_36p	1	validated	missense	c.445	p.V149M	0.85	NULL	HMMPfam_TACC	-	no_errors
TAF2	6873	hgsc.bcm.edu	36	8	120883276	120883276	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	120883276	120883276	G	A	SNP	TAF2	NM_003184	human	genbank	54_36p	-1	reviewed	missense	c.731	p.A244V	1	"superfamily_SSF63737,HMMPfam_Peptidase_M1"	"superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486"	-	no_errors
TEX15	56154	hgsc.bcm.edu	36	8	30822741	30822741	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	30822741	30822741	C	G	SNP	TEX15	NM_031271	human	genbank	54_36p	-1	validated	missense	c.3335	p.S1112T	0	NULL	NULL	-	no_errors
TG	7038	hgsc.bcm.edu	36	8	133963361	133963361	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	133963361	133963361	G	A	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	missense	c.710	p.C237Y	1	superfamily_Thyroglobulin type-1 domain	"superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2"	-	no_errors
TG	7038	hgsc.bcm.edu	36	8	133980290	133980290	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	133980290	133980290	C	A	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	missense	c.3283	p.Q1095K	0	"HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain"	"HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like"	-	no_errors
TG	7038	hgsc.bcm.edu	36	8	134004864	134004864	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	134004864	134004864	G	C	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	missense	c.4628	p.C1543S	1	"HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain"	"HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like"	-	no_errors
TG	7038	hgsc.bcm.edu	36	8	134103556	134103556	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	134103556	134103556	G	A	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	missense	c.7015	p.V2339I	0.84	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like"	-	no_errors
TNFRSF10A	8797	hgsc.bcm.edu	36	8	23105437	23105437	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	23105437	23105437	G	T	SNP	TNFRSF10A	NM_003844	human	genbank	54_36p	-1	reviewed	silent	c.1122	p.I374	0	"HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death"	"superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death"	-	no_errors
TOP1MT	116447	hgsc.bcm.edu	36	8	144474760	144474769	+	Frame_Shift_Del	DEL	GCACTCTGTT	GCACTCTGTT	-	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	GCACTCTGTT	GCACTCTGTT	GCACTCTGTT	-	GCACTCTGTT	GCACTCTGTT	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	144474760	144474769	GCACTCTGTT	-	DEL	TOP1MT	NM_052963	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1132_1123	p.N375fs	0.992:0.934:1.000:1.000:0.992:0.996:0.999:1.000:1.000:1.000	"HMMSmart_TOPEUc,superfamily_DNA_brk_join_enz,HMMPfam_Topoisom_I"	"superfamily_TopoI_DNA_bd_euk,HMMPfam_Topoisom_I_N,HMMSmart_TOPEUc,superfamily_DNA_brk_join_enz,HMMPfam_Topoisom_I,superfamily_Topismrse_insert,PatternScan_TOPOISOMERASE_I_EUK"	"(deletion:cds_exon[144474746,144474931])"	no_errors
TUSC3	7991	hgsc.bcm.edu	36	8	15561505	15561505	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	15561505	15561505	T	C	SNP	TUSC3	NM_006765	human	genbank	54_36p	1	reviewed	missense	c.545	p.I182T	1	"HMMPfam_OST3_OST6,superfamily_Thioredoxin-like"	"HMMPfam_OST3_OST6,superfamily_Thioredoxin-like"	-	no_errors
UBR5	51366	hgsc.bcm.edu	36	8	103392901	103392901	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	103392901	103392901	C	T	SNP	UBR5	NM_015902	human	genbank	54_36p	-1	reviewed	splice_site	c.2419-1	e20-1	1	-	-	-	no_errors
UBR5	51366	hgsc.bcm.edu	36	8	103424040	103424040	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	103424040	103424040	T	G	SNP	UBR5	NM_015902	human	genbank	54_36p	-1	reviewed	missense	c.935	p.E312A	1	NULL	"HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
UQCRB	7381	hgsc.bcm.edu	36	8	97316918	97316918	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	97316918	97316918	G	C	SNP	UQCRB	NM_006294	human	genbank	54_36p	-1	reviewed	missense	c.17	p.A6G	0	"HMMPfam_UCR_14kD,superfamily_14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)"	"HMMPfam_UCR_14kD,superfamily_14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)"	-	no_errors
VPS13B	157680	hgsc.bcm.edu	36	8	100935629	100935629	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	100935629	100935629	G	T	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	missense	c.10911	p.M3637I	1	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
XPO7	23039	hgsc.bcm.edu	36	8	21912553	21912553	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	21912553	21912553	C	T	SNP	XPO7	NM_001100161	human	genbank	54_36p	1	validated	missense	c.2461	p.R821C	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N"	-	no_errors
ZC3H3	23144	hgsc.bcm.edu	36	8	144661192	144661192	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	144661192	144661192	G	A	SNP	ZC3H3	NM_015117	human	genbank	54_36p	-1	validated	missense	c.1582	p.R528W	0.01	NULL	"superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
ZFHX4	79776	hgsc.bcm.edu	36	8	77780767	77780767	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	8	77780767	77780767	G	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	missense	c.1889	p.G630V	1	"HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ZFHX4	79776	hgsc.bcm.edu	36	8	77929002	77929002	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	77929002	77929002	A	G	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	silent	c.7155	p.P2385	0	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZFP41	286128	hgsc.bcm.edu	36	8	144403826	144403826	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	8	144403826	144403826	G	A	SNP	ZFP41	NM_173832	human	genbank	54_36p	1	provisional	silent	c.438	p.G146	0.01	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ABCA1	19	hgsc.bcm.edu	36	9	106616559	106616559	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	106616559	106616559	C	T	SNP	ABCA1	NM_005502	human	genbank	54_36p	-1	reviewed	missense	c.3757	p.E1253K	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ACO1	48	hgsc.bcm.edu	36	9	32397428	32397428	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	32397428	32397428	G	A	SNP	ACO1	NM_002197	human	genbank	54_36p	1	reviewed	splice_site	c.266+1	e2+1	1	-	-	-	no_errors
ADAMTS13	11093	hgsc.bcm.edu	36	9	135299848	135299848	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	135299848	135299848	G	C	SNP	ADAMTS13	NM_139025	human	genbank	54_36p	1	reviewed	missense	c.2464	p.A822P	0	NULL	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M10,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Spermadhesin CUB domain"	-	no_errors
ADAMTSL2	9719	hgsc.bcm.edu	36	9	135395654	135395655	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	135395654	135395655	-	T	INS	ADAMTSL2	NM_014694	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.526_527	p.R177fs	1.000:1.000	NULL	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
AGTPBP1	23287	hgsc.bcm.edu	36	9	87447594	87447594	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	87447594	87447594	G	T	SNP	AGTPBP1	NM_015239	human	genbank	54_36p	-1	validated	missense	c.1150	p.H384N	1	NULL	"superfamily_ARM-type_fold,superfamily_SSF53187,HMMPfam_Peptidase_M14"	-	no_errors
ANGPTL2	23452	hgsc.bcm.edu	36	9	128910160	128910160	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	128910160	128910160	G	A	SNP	ANGPTL2	NM_012098	human	genbank	54_36p	-1	reviewed	silent	c.672	p.V224	0.91	NULL	"superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
APTX	54840	hgsc.bcm.edu	36	9	32978112	32978118	+	Frame_Shift_Del	DEL	TCTGCTT	TCTGCTT	-	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	TCTGCTT	TCTGCTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	32978112	32978118	TCTGCTT	-	DEL	APTX	NM_175073	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.149_143	p.K48fs	1.000:1.000:0.998:1.000:1.000:1.000:1.000	superfamily_SMAD/FHA domain	"superfamily_SMAD/FHA domain,superfamily_HIT-like,HMMPfam_HIT,PatternScan_HIT_1,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[32978081,32978127])"	no_errors
AQP3	360	hgsc.bcm.edu	36	9	33432355	33432356	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	33432355	33432356	-	A	INS	AQP3	NM_004925	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.654_653	p.D219fs	0.995:1.000	"HMMPfam_MIP,superfamily_Aquaporin-like"	"HMMPfam_MIP,superfamily_Aquaporin-like,PatternScan_MIP"	-	no_errors
AQP7	364	hgsc.bcm.edu	36	9	33376989	33376989	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	33376989	33376989	C	G	SNP	AQP7	NM_001170	human	genbank	54_36p	-1	reviewed	silent	c.246	p.V82	0	"HMMPfam_MIP,superfamily_MIP"	"PatternScan_MIP,HMMPfam_MIP,superfamily_MIP"	-	no_errors
ASTN2	23245	hgsc.bcm.edu	36	9	118778859	118778859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	118778859	118778859	C	T	SNP	ASTN2	NM_198187	human	genbank	54_36p	-1	validated	missense	c.1618	p.A540T	0.99	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00457,superfamily_Fibronectin type III,HMMPfam_fn3"	-	no_errors
BAT2L1	84726	hgsc.bcm.edu	36	9	133348587	133348587	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	133348587	133348587	A	T	SNP	BAT2L	NM_013318	human	genbank	54_36p	1	validated	silent	c.5394	p.P1798	0.15	NULL	HMMPfam_BAT2_N	-	no_errors
SCAI	286205	hgsc.bcm.edu	36	9	126858003	126858003	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	126858003	126858003	T	A	SNP	C9orf126	NM_173690	human	genbank	54_36p	-1	validated	missense	c.272	p.K91I	1	NULL	NULL	-	no_errors
C9orf3	84909	hgsc.bcm.edu	36	9	96562314	96562314	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	96562314	96562314	T	C	SNP	C9orf3	NM_032823	human	genbank	54_36p	1	provisional	missense	c.428	p.L143S	1	superfamily_SSF63737	"superfamily_SSF63737,superfamily_SSF55486,superfamily_ARM-type_fold,HMMPfam_Leuk-A4-hydro_C"	-	no_errors
C9orf30	91283	hgsc.bcm.edu	36	9	102252719	102252719	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	102252719	102252719	C	A	SNP	C9orf30	NM_080655	human	genbank	54_36p	1	predicted	missense	c.478	p.P160T	1	NULL	NULL	-	no_errors
C9orf50	375759	hgsc.bcm.edu	36	9	131415664	131415664	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	131415664	131415664	G	C	SNP	C9orf50	NM_199350	human	genbank	54_36p	-1	validated	missense	c.914	p.A305G	0	NULL	NULL	-	no_errors
C9orf72	203228	hgsc.bcm.edu	36	9	27546634	27546634	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	27546634	27546634	A	G	SNP	C9orf72	NM_018325	human	genbank	54_36p	-1	validated	missense	c.1016	p.F339S	1	NULL	NULL	-	no_errors
C9orf72	203228	hgsc.bcm.edu	36	9	27548578	27548578	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	27548578	27548578	T	C	SNP	C9orf72	NM_018325	human	genbank	54_36p	-1	validated	missense	c.766	p.T256A	1	NULL	NULL	-	no_errors
C9orf96	169436	hgsc.bcm.edu	36	9	135255432	135255433	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	135255432	135255433	-	C	INS	C9orf96	NM_153710	human	genbank	54_36p	1	validated	frame_shift_ins	c.1152_1153	p.V384fs	0.002:0.001	superfamily_ARM repeat	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_ARM repeat"	-	no_errors
C9orf96	169436	hgsc.bcm.edu	36	9	135255456	135255456	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	135255456	135255456	G	-	DEL	C9orf96	NM_153710	human	genbank	54_36p	1	validated	frame_shift_del	c.1176	p.L393fs	0.99	superfamily_ARM repeat	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,HMMPfam_Pkinase"	"(deletion:cds_exon[135255362,135255478])"	no_errors
CA9	768	hgsc.bcm.edu	36	9	35669874	35669874	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	35669874	35669874	G	A	SNP	CA9	NM_001216	human	genbank	54_36p	1	reviewed	silent	c.1089	p.L363	0.89	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase"	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
CD274	29126	hgsc.bcm.edu	36	9	5452907	5452907	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	5452907	5452907	G	T	SNP	CD274	NM_014143	human	genbank	54_36p	1	provisional	missense	c.468	p.Q156H	1	"superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_C2-set_2"	-	no_errors
CENPP	401541	hgsc.bcm.edu	36	9	94181964	94181964	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	94181964	94181964	T	A	SNP	CENPP	NM_001012267	human	genbank	54_36p	1	validated	splice_site	c.564+2	e5+2	1	-	-	-	no_errors
CIZ1	25792	hgsc.bcm.edu	36	9	129980896	129980896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	129980896	129980896	C	T	SNP	CIZ1	NM_012127	human	genbank	54_36p	-1	validated	missense	c.1411	p.V471M	0	NULL	"HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CIZ1	25792	hgsc.bcm.edu	36	9	129982566	129982566	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	129982566	129982566	G	C	SNP	CIZ1	NM_012127	human	genbank	54_36p	-1	validated	missense	c.740	p.P247R	0.05	NULL	"HMMSmart_ZnF_U1,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
CIZ1	25792	hgsc.bcm.edu	36	9	129987678	129987678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	129987678	129987678	C	T	SNP	CIZ1	NM_012127	human	genbank	54_36p	-1	validated	missense	c.557	p.R186Q	0.07	NULL	"HMMSmart_ZnF_U1,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
CNTFR	1271	hgsc.bcm.edu	36	9	34546274	34546274	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	34546274	34546274	G	T	SNP	CNTFR	NM_001842	human	genbank	54_36p	-1	reviewed	silent	c.747	p.L249	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
CORO2A	7464	hgsc.bcm.edu	36	9	99928679	99928679	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	99928679	99928679	T	A	SNP	CORO2A	NM_003389	human	genbank	54_36p	-1	reviewed	missense	c.1419	p.E473D	1	NULL	"HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900,PatternScan_GLNA_1"	-	no_errors
CTSL3	392360	hgsc.bcm.edu	36	9	89578282	89578282	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	89578282	89578282	A	G	SNP	CTSL3	NM_001023564	human	genbank	54_36p	1	validated	missense	c.328	p.M110V	1	NULL	"HMMPfam_Inhibitor_I29,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1"	-	no_errors
DBC1	1620	hgsc.bcm.edu	36	9	120970127	120970127	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	120970127	120970127	C	T	SNP	DBC1	NM_014618	human	genbank	54_36p	-1	validated	missense	c.1342	p.G448S	1	NULL	HMMSmart_SM00457	-	no_errors
DBH	1621	hgsc.bcm.edu	36	9	135497212	135497212	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	135497212	135497212	C	G	SNP	DBH	NM_000787	human	genbank	54_36p	1	reviewed	missense	c.549	p.I183M	1	HMMSmart_DoH	"HMMSmart_DoH,HMMPfam_DOMON,superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2"	-	no_errors
DENND1A	57706	hgsc.bcm.edu	36	9	125185836	125185836	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	125185836	125185836	C	T	SNP	DENND1A	NM_020946	human	genbank	54_36p	-1	validated	silent	c.1755	p.Q585	0.99	NULL	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801"	-	no_errors
DENND1A	57706	hgsc.bcm.edu	36	9	125432577	125432577	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	125432577	125432577	C	G	SNP	DENND1A	NM_020946	human	genbank	54_36p	-1	validated	splice_site	c.619-1	e10-1	1	-	-	-	no_errors
ECM2	1842	hgsc.bcm.edu	36	9	94316893	94316893	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	94316893	94316893	G	A	SNP	ECM2	NM_001393	human	genbank	54_36p	-1	reviewed	nonsense	c.895	p.R299*	0.58	superfamily_SSF52058	"HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
ELAVL2	1993	hgsc.bcm.edu	36	9	23682568	23682568	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	23682568	23682568	G	A	SNP	ELAVL2	NM_004432	human	genbank	54_36p	-1	validated	missense	c.1067	p.T356M	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
FAM102A	399665	hgsc.bcm.edu	36	9	129755943	129755943	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	129755943	129755943	G	A	SNP	FAM102A	NM_001035254	human	genbank	54_36p	-1	validated	silent	c.229	p.L77	1	HMMPfam_Eeig1	HMMPfam_Eeig1	-	no_errors
FAM78A	286336	hgsc.bcm.edu	36	9	133126386	133126386	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	133126386	133126386	C	T	SNP	FAM78A	NM_033387	human	genbank	54_36p	-1	validated	missense	c.496	p.V166I	1	NULL	NULL	-	no_errors
FBXW2	26190	hgsc.bcm.edu	36	9	122578230	122578230	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	122578230	122578230	G	C	SNP	FBXW2	NM_012164	human	genbank	54_36p	-1	reviewed	missense	c.781	p.L261V	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
FGD3	619477	hgsc.bcm.edu	36	9	94805063	94805063	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	94805063	94805063	G	A	SNP	FGD3	NM_001083536	human	genbank	54_36p	1	validated	silent	c.489	p.Q163	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE"	-	no_errors
FRMPD1	22844	hgsc.bcm.edu	36	9	37735493	37735494	+	Frame_Shift_Del	DEL	GT	GT	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	37735493	37735494	GT	-	DEL	FRMPD1	NM_014907	human	genbank	54_36p	1	provisional	frame_shift_del	c.3464_3465	p.G1155fs	0.009:0.005	NULL	"PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	"(deletion:cds_exon[37734386,37736766])"	no_errors
GABBR2	9568	hgsc.bcm.edu	36	9	100256286	100256288	+	In_Frame_Del	DEL	TTG	TTG	-	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	TTG	TTG	TTG	-	TTG	TTG	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	100256286	100256288	TTG	-	DEL	GABBR2	NM_005458	human	genbank	54_36p	-1	validated	in_frame_del	c.1034_1032	p.N344in_frame_del	1.000:1.000:0.996	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	"(deletion:cds_exon[100256084,100256320])"	no_errors
GAPVD1	26130	hgsc.bcm.edu	36	9	127143323	127143323	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	127143323	127143323	G	T	SNP	GAPVD1	NM_015635	human	genbank	54_36p	1	validated	missense	c.3005	p.R1002I	1	NULL	"superfamily_Rho_GAP,HMMPfam_RasGAP,superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9"	-	no_errors
GDA	9615	hgsc.bcm.edu	36	9	74030472	74030472	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	74030472	74030472	T	C	SNP	GDA	NM_004293	human	genbank	54_36p	1	validated	silent	c.774	p.Y258	1	"HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases"	"HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases"	-	no_errors
GLT6D1	360203	hgsc.bcm.edu	36	9	137655932	137655932	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	137655932	137655932	T	C	SNP	GLT6D1	NM_182974	human	genbank	54_36p	-1	provisional	silent	c.663	p.G221	0	"HMMPfam_Glyco_transf_6,superfamily_SSF53448"	"HMMPfam_Glyco_transf_6,superfamily_SSF53448"	-	no_errors
GNAQ	2776	hgsc.bcm.edu	36	9	79533394	79533394	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	79533394	79533394	C	T	SNP	GNAQ	NM_002072	human	genbank	54_36p	-1	provisional	missense	c.745	p.E249K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	-	no_errors
GOLGA1	2800	hgsc.bcm.edu	36	9	126684035	126684035	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	126684035	126684035	T	C	SNP	GOLGA1	NM_002077	human	genbank	54_36p	-1	reviewed	missense	c.1985	p.E662G	0.9	NULL	"superfamily_Prefoldin,HMMPfam_GRIP,HMMSmart_SM00755"	-	no_errors
GRIN3A	116443	hgsc.bcm.edu	36	9	103415524	103415524	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	103415524	103415524	C	A	SNP	GRIN3A	NM_133445	human	genbank	54_36p	-1	reviewed	missense	c.2721	p.W907C	1	"superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan"	"superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan"	-	no_errors
GRIN3A	116443	hgsc.bcm.edu	36	9	103489243	103489243	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	103489243	103489243	C	T	SNP	GRIN3A	NM_133445	human	genbank	54_36p	-1	reviewed	missense	c.760	p.V254I	1	superfamily_SSF53822	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850"	-	no_errors
GSN	2934	hgsc.bcm.edu	36	9	123134620	123134620	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	123134620	123134620	T	C	SNP	GSN	NM_000177	human	genbank	54_36p	1	reviewed	missense	c.2267	p.F756S	1	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin"	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin"	-	no_errors
HINT2	84681	hgsc.bcm.edu	36	9	35803088	35803088	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	35803088	35803088	A	T	SNP	HINT2	NM_032593	human	genbank	54_36p	-1	validated	missense	c.455	p.V152E	1	"superfamily_HIT-like,HMMPfam_HIT,PatternScan_HIT_1"	"superfamily_HIT-like,HMMPfam_HIT,PatternScan_HIT_1"	-	no_errors
IFNA8	3445	hgsc.bcm.edu	36	9	21399495	21399496	+	Frame_Shift_Del	DEL	AA	AA	-	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	21399495	21399496	AA	-	DEL	IFNA8	NM_002170	human	genbank	54_36p	1	validated	frame_shift_del	c.320_321	p.E107fs	0.000:0.000	"HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076"	"HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D"	"(deletion:cds_exon[21399176,21399745])"	no_errors
INVS	27130	hgsc.bcm.edu	36	9	102055116	102055116	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	102055116	102055116	C	G	SNP	INVS	NM_014425	human	genbank	54_36p	1	reviewed	missense	c.1341	p.I447M	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
JAK2	3717	hgsc.bcm.edu	36	9	5062586	5062586	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	5062586	5062586	T	C	SNP	JAK2	NM_004972	human	genbank	54_36p	1	reviewed	missense	c.1736	p.L579P	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
KANK1	23189	hgsc.bcm.edu	36	9	728303	728303	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	728303	728303	C	A	SNP	KANK1	NM_015158	human	genbank	54_36p	1	reviewed	missense	c.3352	p.L1118I	1	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
C9orf174	100499483	hgsc.bcm.edu	36	9	99111666	99111666	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	99111666	99111666	C	A	SNP	KIAA1529	NM_020893	human	genbank	54_36p	1	predicted	missense	c.768	p.S256R	0.68	NULL	NULL	-	no_errors
C9orf174	100499483	hgsc.bcm.edu	36	9	99119271	99119271	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	99119271	99119271	G	A	SNP	KIAA1529	NM_020893	human	genbank	54_36p	1	predicted	nonsense	c.1448	p.W483*	1	NULL	NULL	-	no_errors
KIAA1797	54914	hgsc.bcm.edu	36	9	20897201	20897201	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	20897201	20897201	G	T	SNP	KIAA1797	NM_017794	human	genbank	54_36p	1	validated	missense	c.2678	p.W893L	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
KIAA2026	158358	hgsc.bcm.edu	36	9	5913031	5913031	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	5913031	5913031	C	A	SNP	KIAA2026	NM_001017969	human	genbank	54_36p	-1	validated	missense	c.2965	p.A989S	0.97	NULL	superfamily_Bromodomain	-	no_errors
KLHL9	55958	hgsc.bcm.edu	36	9	21323640	21323640	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	21323640	21323640	G	A	SNP	KLHL9	NM_018847	human	genbank	54_36p	-1	validated	missense	c.1219	p.R407C	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
LRSAM1	90678	hgsc.bcm.edu	36	9	129269902	129269902	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	129269902	129269902	T	G	SNP	LRSAM1	NM_001005373	human	genbank	54_36p	1	validated	silent	c.591	p.T197	0.9	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_RING/U-box"	-	no_errors
LRSAM1	90678	hgsc.bcm.edu	36	9	129269902	129269902	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	129269902	129269902	T	G	SNP	LRSAM1	NM_001005373	human	genbank	54_36p	1	validated	silent	c.591	p.T197	0.9	superfamily_L domain-like	"HMMPfam_LRR_1,HMMSmart_SM00454,HMMSmart_SM00369,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMSmart_SM00364,superfamily_L domain-like,superfamily_RING/U-box"	-	no_errors
MAN1B1	11253	hgsc.bcm.edu	36	9	139122816	139122816	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	139122816	139122816	C	T	SNP	MAN1B1	NM_016219	human	genbank	54_36p	1	validated	silent	c.2052	p.Y684	0.18	"superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47"	"superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47"	-	no_errors
METTL11A	28989	hgsc.bcm.edu	36	9	131434886	131434886	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	131434886	131434886	A	-	DEL	METTL11A	NM_014064	human	genbank	54_36p	1	validated	frame_shift_del	c.83	p.D28fs	1	"HMMPfam_DUF858,superfamily_SSF53335"	"HMMPfam_DUF858,superfamily_SSF53335"	"(deletion:cds_exon[131434804,131434965])"	no_errors
MURC	347273	hgsc.bcm.edu	36	9	102388359	102388359	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	102388359	102388359	C	G	SNP	MURC	NM_001018116	human	genbank	54_36p	1	validated	missense	c.900	p.S300R	0	NULL	NULL	-	no_errors
MUSK	4593	hgsc.bcm.edu	36	9	112499564	112499564	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	112499564	112499564	G	C	SNP	MUSK	NM_005592	human	genbank	54_36p	1	validated	missense	c.625	p.E209Q	1	"HMMSmart_SM00409,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
NANS	54187	hgsc.bcm.edu	36	9	99885039	99885039	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	99885039	99885039	G	-	DEL	NANS	NM_018946	human	genbank	54_36p	1	reviewed	frame_shift_del	c.961	p.G321fs	1	"superfamily_AFP III-like domain (Pfam 01354),HMMPfam_SAF"	"superfamily_Aldolase,HMMPfam_NeuB,superfamily_AFP III-like domain (Pfam 01354),HMMPfam_SAF"	"(deletion:cds_exon[99884949,99885158])"	no_errors
NFX1	4799	hgsc.bcm.edu	36	9	33303762	33303762	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	33303762	33303762	G	A	SNP	NFX1	NM_002504	human	genbank	54_36p	1	reviewed	missense	c.1559	p.C520Y	1	"HMMPfam_zf-NF-X1,HMMSmart_SM00438"	"superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_PHD_1,HMMPfam_zf-C3HC4,HMMPfam_zf-NF-X1,HMMSmart_SM00438,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H"	-	no_errors
NOL8	55035	hgsc.bcm.edu	36	9	94117487	94117487	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	94117487	94117487	T	G	SNP	NOL8	NM_017948	human	genbank	54_36p	-1	validated	missense	c.1241	p.N414T	0	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
NOTCH1	4851	hgsc.bcm.edu	36	9	138510763	138510763	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	138510763	138510763	G	C	SNP	NOTCH1	NM_017617	human	genbank	54_36p	-1	reviewed	missense	c.7249	p.P2417A	0.61	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NUP188	23511	hgsc.bcm.edu	36	9	130785399	130785399	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	130785399	130785399	G	A	SNP	NUP188	NM_015354	human	genbank	54_36p	1	validated	silent	c.1803	p.T601	0.63	HMMPfam_Nup188	HMMPfam_Nup188	-	no_errors
OLFM1	10439	hgsc.bcm.edu	36	9	137151792	137151792	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	137151792	137151792	C	A	SNP	OLFM1	NM_014279	human	genbank	54_36p	1	validated	missense	c.1351	p.Q451K	1	"HMMPfam_OLF,HMMSmart_OLF"	"HMMPfam_OLF,HMMSmart_OLF,PatternScan_ER_TARGET"	-	no_errors
OLFML2A	169611	hgsc.bcm.edu	36	9	126597135	126597135	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	126597135	126597135	G	A	SNP	OLFML2A	NM_182487	human	genbank	54_36p	1	validated	missense	c.366	p.M122I	1	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
PALM2-AKAP2	445815	hgsc.bcm.edu	36	9	111939566	111939566	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	9	111939566	111939566	G	A	SNP	PALM2-AKAP2	NM_007203	human	genbank	54_36p	1	validated	missense	c.1921	p.A641T	0.03	NULL	HMMPfam_RII_binding_1	-	no_errors
PAPPA	5069	hgsc.bcm.edu	36	9	117990026	117990026	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	117990026	117990026	C	A	SNP	PAPPA	NM_002581	human	genbank	54_36p	1	reviewed	missense	c.1188	p.D396E	1	superfamily_SSF55486	"superfamily_ConA_like_lec_gl,HMMSmart_LamGL,superfamily_SSF55486,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
PAPPA	5069	hgsc.bcm.edu	36	9	118133454	118133454	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	118133454	118133454	C	A	SNP	PAPPA	NM_002581	human	genbank	54_36p	1	reviewed	silent	c.3258	p.L1086	1	superfamily_SSF55486	"HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMSmart_LamGL,HMMPfam_Peptidase_M43,superfamily_ConA_like_lec_gl,superfamily_Complement_control_module,superfamily_SSF55486"	-	no_errors
PHF19	26147	hgsc.bcm.edu	36	9	122663242	122663242	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	122663242	122663242	T	C	SNP	PHF19	NM_015651	human	genbank	54_36p	-1	validated	missense	c.1250	p.H417R	1	NULL	"HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
PHF19	26147	hgsc.bcm.edu	36	9	122672620	122672620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	122672620	122672620	C	T	SNP	PHF19	NM_015651	human	genbank	54_36p	-1	validated	missense	c.286	p.E96K	1	superfamily_FYVE/PHD zinc finger	"HMMSmart_SM00249,HMMSmart_SM00333,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT"	-	no_errors
PIGO	84720	hgsc.bcm.edu	36	9	35081522	35081523	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	35081522	35081523	-	G	INS	PIGO	NM_032634	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2362_2361	p.T787fs	0.995:0.987	NULL	"superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest"	-	no_errors
PPP2R4	5524	hgsc.bcm.edu	36	9	130931116	130931116	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	130931116	130931116	C	T	SNP	PPP2R4	NM_178001	human	genbank	54_36p	1	reviewed	missense	c.353	p.T118M	1	HMMPfam_PTPA	HMMPfam_PTPA	-	no_errors
PPP3R2	5535	hgsc.bcm.edu	36	9	103396769	103396769	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	103396769	103396769	C	A	SNP	PPP3R2	NM_147180	human	genbank	54_36p	-1	provisional	missense	c.265	p.G89C	1	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand"	-	no_errors
PRPF4	9128	hgsc.bcm.edu	36	9	115084769	115084769	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	115084769	115084769	G	A	SNP	PRPF4	NM_004697	human	genbank	54_36p	1	provisional	missense	c.418	p.V140I	1	"HMMSmart_SM00500,superfamily_WD40 repeat-like"	"HMMSmart_SM00500,HMMPfam_PRP4,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_PEROXIDASE_2,PatternScan_WD_REPEATS_1"	-	no_errors
PRSS3	5646	hgsc.bcm.edu	36	9	33789033	33789033	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	33789033	33789033	C	T	SNP	PRSS3	NM_002771	human	genbank	54_36p	1	reviewed	missense	c.599	p.S200F	1	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS"	-	no_errors
PTCH1	5727	hgsc.bcm.edu	36	9	97279757	97279757	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	97279757	97279757	G	C	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	missense	c.1396	p.Q466E	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
PTPDC1	138639	hgsc.bcm.edu	36	9	95899489	95899489	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	95899489	95899489	G	C	SNP	PTPDC1	NM_152422	human	genbank	54_36p	1	reviewed	missense	c.814	p.V272L	1	"superfamily_SSF52799,HMMPfam_DSPc"	"superfamily_SSF52799,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPDC1	138639	hgsc.bcm.edu	36	9	95903839	95903839	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	95903839	95903839	T	A	SNP	PTPDC1	NM_152422	human	genbank	54_36p	1	reviewed	silent	c.2178	p.L726	0.21	NULL	"HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799"	-	no_errors
PTPN3	5774	hgsc.bcm.edu	36	9	111184496	111184496	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	111184496	111184496	T	A	SNP	PTPN3	NM_002829	human	genbank	54_36p	-1	reviewed	missense	c.2435	p.H812L	1	"superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPN3	5774	hgsc.bcm.edu	36	9	111184498	111184498	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	111184498	111184498	G	T	SNP	PTPN3	NM_002829	human	genbank	54_36p	-1	reviewed	missense	c.2433	p.D811E	1	"HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRD	5789	hgsc.bcm.edu	36	9	8461015	8461015	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	8461015	8461015	C	T	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	missense	c.3484	p.D1162N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
QSOX2	169714	hgsc.bcm.edu	36	9	138253546	138253547	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	138253546	138253547	TT	-	DEL	QSOX2	NM_181701	human	genbank	54_36p	-1	validated	frame_shift_del	c.738_737	p.K246fs	0.001:0.001	NULL	"superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,superfamily_Evr1_Alr,HMMPfam_Evr1_Alr"	"(deletion:cds_exon[138253463,138253608])"	no_errors
RALGPS1	9649	hgsc.bcm.edu	36	9	128997191	128997191	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	128997191	128997191	G	T	SNP	RALGPS1	NM_014636	human	genbank	54_36p	1	provisional	missense	c.911	p.G304V	1	superfamily_Ras GEF	"superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
RANBP6	26953	hgsc.bcm.edu	36	9	6004121	6004123	+	In_Frame_Del	DEL	TTT	TTT	-	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	TTT	TTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	6004121	6004123	TTT	-	DEL	RANBP6	NM_012416	human	genbank	54_36p	-1	validated	in_frame_del	c.1487_1485	p.K495in_frame_del	1.000:1.000:1.000	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_HEAT"	"(deletion:cds_exon[6002290,6005607])"	no_errors
RAPGEF1	2889	hgsc.bcm.edu	36	9	133449611	133449611	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	C	T	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	133449611	133449611	T	C	SNP	RAPGEF1	NM_198679	human	genbank	54_36p	-1	reviewed	missense	c.2818	p.K940E	1	"superfamily_Ras_GEF,HMMSmart_RasGEF,HMMPfam_RasGEF"	"superfamily_Ras_GEF,HMMSmart_RasGEFN,HMMPfam_RasGEF_N,HMMSmart_RasGEF,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
ROR2	4920	hgsc.bcm.edu	36	9	93526081	93526081	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	93526081	93526081	G	A	SNP	ROR2	NM_004560	human	genbank	54_36p	-1	reviewed	missense	c.2516	p.P839L	0.95	NULL	"PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_Fz,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
RORB	6096	hgsc.bcm.edu	36	9	76476542	76476542	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	76476542	76476542	G	T	SNP	RORB	NM_006914	human	genbank	54_36p	1	reviewed	nonsense	c.1129	p.E377*	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
RUSC2	9853	hgsc.bcm.edu	36	9	35546372	35546372	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	35546372	35546372	G	T	SNP	RUSC2	NM_014806	human	genbank	54_36p	1	validated	missense	c.2910	p.K970N	1	NULL	"HMMPfam_RUN,HMMSmart_SM00593,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
RXRA	6256	hgsc.bcm.edu	36	9	136453473	136453473	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	136453473	136453473	G	T	SNP	RXRA	NM_002957	human	genbank	54_36p	1	reviewed	splice_site	c.910+1	e6+1	1	-	-	-	no_errors
SECISBP2	79048	hgsc.bcm.edu	36	9	91137694	91137694	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	9	91137694	91137694	G	A	SNP	SECISBP2	NM_024077	human	genbank	54_36p	1	reviewed	missense	c.853	p.A285T	0	NULL	"superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae"	-	no_errors
SLC2A8	29988	hgsc.bcm.edu	36	9	129202018	129202018	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	129202018	129202018	C	G	SNP	SLC2A8	NM_014580	human	genbank	54_36p	1	provisional	silent	c.438	p.S146	0.94	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2"	-	no_errors
SMARCA2	6595	hgsc.bcm.edu	36	9	2029514	2029514	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	2029514	2029514	C	A	SNP	SMARCA2	NM_003070	human	genbank	54_36p	1	reviewed	missense	c.404	p.S135Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SMARCA2	6595	hgsc.bcm.edu	36	9	2044620	2044620	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	2044620	2044620	G	T	SNP	SMARCA2	NM_003070	human	genbank	54_36p	1	reviewed	missense	c.1070	p.R357M	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SMC2	10592	hgsc.bcm.edu	36	9	105915480	105915480	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	105915480	105915480	G	A	SNP	SMC2	NM_001042550	human	genbank	54_36p	1	validated	silent	c.1317	p.K439	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
SMC2	10592	hgsc.bcm.edu	36	9	105927201	105927201	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	105927201	105927201	A	C	SNP	SMC2	NM_001042550	human	genbank	54_36p	1	validated	missense	c.2445	p.K815N	1	"HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SPAG8	26206	hgsc.bcm.edu	36	9	35801022	35801022	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	35801022	35801022	G	T	SNP	SPAG8	NM_172312	human	genbank	54_36p	-1	reviewed	missense	c.897	p.S299R	0.57	NULL	NULL	-	no_errors
SVEP1	79987	hgsc.bcm.edu	36	9	112209360	112209360	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	112209360	112209360	C	T	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.8341	p.V2781I	0	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	###############################################################################################################################################################################################################################################################	-	no_errors
SVEP1	79987	hgsc.bcm.edu	36	9	112252237	112252237	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	112252237	112252237	A	C	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.4026	p.C1342W	1	"HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
SVEP1	79987	hgsc.bcm.edu	36	9	112281803	112281803	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	112281803	112281803	G	C	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.2420	p.A807G	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TDRD7	23424	hgsc.bcm.edu	36	9	99230677	99230677	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	99230677	99230677	G	C	SNP	TDRD7	NM_014290	human	genbank	54_36p	1	validated	missense	c.109	p.D37H	1	NULL	"HMMPfam_TUDOR,superfamily_SSF63748,HMMSmart_TUDOR"	-	no_errors
TEK	7010	hgsc.bcm.edu	36	9	27159607	27159607	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	27159607	27159607	T	A	SNP	TEK	NM_000459	human	genbank	54_36p	1	reviewed	missense	c.608	p.F203Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TEX10	54881	hgsc.bcm.edu	36	9	102122463	102122463	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	102122463	102122463	G	C	SNP	TEX10	NM_017746	human	genbank	54_36p	-1	provisional	missense	c.2107	p.R703G	0.96	NULL	"superfamily_ARM-type_fold,HMMPfam_HEAT"	-	no_errors
TMEM8B	51754	hgsc.bcm.edu	36	9	35832574	35832574	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	35832574	35832574	G	A	SNP	C9orf127	NM_001042589	human	genbank	54_36p	1	provisional	missense	c.139	p.D47N	1	NULL	"PatternScan_EGF_1,PatternScan_EGF_2"	-	no_errors
TRAF1	7185	hgsc.bcm.edu	36	9	122711475	122711476	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	122711475	122711476	-	G	INS	TRAF1	NM_005658	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.886_885	p.F295fs	1.000:0.968	"superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	"superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
TRAF1	7185	hgsc.bcm.edu	36	9	122713525	122713525	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	122713525	122713525	A	C	SNP	TRAF1	NM_005658	human	genbank	54_36p	-1	reviewed	missense	c.793	p.F265V	1	superfamily_TRAF domain-like	"HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like"	-	no_errors
TRPM3	80036	hgsc.bcm.edu	36	9	72667830	72667830	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	72667830	72667830	C	-	DEL	TRPM3	NM_001007471	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.276	p.I93fs	0.69	NULL	HMMPfam_Ion_trans	"(deletion:cds_exon[72667644,72667848])"	no_errors
UBAP2	55833	hgsc.bcm.edu	36	9	33917935	33917935	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	33917935	33917935	G	C	SNP	UBAP2	NM_018449	human	genbank	54_36p	-1	reviewed	missense	c.2231	p.A744G	0.21	NULL	"HMMPfam_UBA,HMMSmart_UBA"	-	no_errors
VLDLR	7436	hgsc.bcm.edu	36	9	2631485	2631485	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	9	2631485	2631485	A	C	SNP	VLDLR	NM_003383	human	genbank	54_36p	1	validated	missense	c.434	p.D145A	1	"superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	###############################################################################################################################################################################################################################################################	-	no_errors
VPS13A	23230	hgsc.bcm.edu	36	9	79119353	79119353	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	79119353	79119353	C	G	SNP	VPS13A	NM_033305	human	genbank	54_36p	1	reviewed	missense	c.4365	p.N1455K	1	NULL	HMMPfam_DUF1162	-	no_errors
ZBTB5	9925	hgsc.bcm.edu	36	9	37432044	37432044	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	37432044	37432044	C	T	SNP	ZBTB5	NM_014872	human	genbank	54_36p	-1	validated	missense	c.505	p.A169T	0.02	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZDHHC12	84885	hgsc.bcm.edu	36	9	130523446	130523447	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	9	130523446	130523447	TT	-	DEL	ZDHHC12	NM_032799	human	genbank	54_36p	-1	validated	frame_shift_del	c.639_638	p.E213fs	1.000:1.000	NULL	HMMPfam_zf-DHHC	"(deletion:cds_exon[130523281,130523602])"	no_errors
ZER1	10444	hgsc.bcm.edu	36	9	130555993	130555993	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	9	130555993	130555993	C	T	SNP	ZER1	NM_006336	human	genbank	54_36p	-1	provisional	silent	c.225	p.S75	0.05	NULL	"superfamily_SSF52047,superfamily_ARM-type_fold"	-	no_errors
ZNF462	58499	hgsc.bcm.edu	36	9	108726962	108726962	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	9	108726962	108726962	C	T	SNP	ZNF462	NM_021224	human	genbank	54_36p	1	validated	silent	c.948	p.T316	0.16	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_beta-sandwich domain of Sec23/24"	-	no_errors
ABCC2	1244	hgsc.bcm.edu	36	10	101568631	101568631	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	101568631	101568631	C	G	SNP	ABCC2	NM_000392	human	genbank	54_36p	1	reviewed	missense	c.2366	p.S789C	0.99	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ACTR1A	10121	hgsc.bcm.edu	36	10	104230888	104230888	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	104230888	104230888	G	C	SNP	ACTR1A	NM_005736	human	genbank	54_36p	-1	reviewed	missense	c.1019	p.T340R	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
ADAM8	101	hgsc.bcm.edu	36	10	134926668	134926669	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	134926668	134926669	-	T	INS	ADAM8	NM_001109	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2457_2456	p.L820fs	0.002:0.000	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ADAMTS14	140766	hgsc.bcm.edu	36	10	72159929	72159929	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	72159929	72159929	C	A	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.1020	p.H340Q	0.94	"superfamily_SSF55486,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS14	140766	hgsc.bcm.edu	36	10	72170814	72170814	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	72170814	72170814	A	T	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.1823	p.E608V	1	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1"	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_SSF55486"	-	no_errors
ADAMTS14	140766	hgsc.bcm.edu	36	10	72190319	72190319	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	72190319	72190319	G	T	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.3385	p.D1129Y	0	NULL	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_SSF55486"	-	no_errors
AKR1C4	1109	hgsc.bcm.edu	36	10	5237796	5237796	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	5237796	5237796	A	C	SNP	AKR1C4	NM_001818	human	genbank	54_36p	1	reviewed	missense	c.446	p.E149A	1	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
ALOX5	240	hgsc.bcm.edu	36	10	45211372	45211372	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	45211372	45211372	C	G	SNP	ALOX5	NM_000698	human	genbank	54_36p	1	reviewed	missense	c.413	p.T138R	0.99	"superfamily_Lipoxygenase,HMMPfam_Lipoxygenase"	"superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2"	-	no_errors
ANK3	288	hgsc.bcm.edu	36	10	61517940	61517940	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	61517940	61517940	G	C	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.3511	p.L1171V	0.99	NULL	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
ANXA11	311	hgsc.bcm.edu	36	10	81920585	81920585	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	81920585	81920585	T	A	SNP	ANXA11	NM_001157	human	genbank	54_36p	-1	reviewed	missense	c.122	p.N41I	1	NULL	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
ANXA11	311	hgsc.bcm.edu	36	10	81920593	81920593	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	81920593	81920593	C	A	SNP	ANXA11	NM_001157	human	genbank	54_36p	-1	reviewed	silent	c.114	p.G38	1	NULL	"superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335"	-	no_errors
ANXA7	310	hgsc.bcm.edu	36	10	74808687	74808687	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	74808687	74808687	G	A	SNP	ANXA7	NM_004034	human	genbank	54_36p	-1	reviewed	silent	c.1332	p.V444	1	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
ARMC4	55130	hgsc.bcm.edu	36	10	28141527	28141527	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	28141527	28141527	C	A	SNP	ARMC4	NM_018076	human	genbank	54_36p	-1	validated	missense	c.3055	p.D1019Y	0.52	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm"	-	no_errors
ARMC4	55130	hgsc.bcm.edu	36	10	28323962	28323962	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	28323962	28323962	T	G	SNP	ARMC4	NM_018076	human	genbank	54_36p	-1	validated	missense	c.116	p.E39A	0.94	NULL	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
ARMS2	387715	hgsc.bcm.edu	36	10	124204248	124204248	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	124204248	124204248	C	A	SNP	ARMS2	NM_001099667	human	genbank	54_36p	1	reviewed	nonsense	c.15	p.Y5*	0	NULL	NULL	-	no_errors
ATRNL1	26033	hgsc.bcm.edu	36	10	117049749	117049749	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	117049749	117049749	T	A	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	splice_site	c.2629+2	e16+2	1	-	-	-	no_errors
BAMBI	25805	hgsc.bcm.edu	36	10	29011120	29011120	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	29011120	29011120	G	C	SNP	BAMBI	NM_012342	human	genbank	54_36p	1	reviewed	missense	c.567	p.Q189H	1	NULL	"HMMPfam_BAMBI,superfamily_SSF57302"	-	no_errors
BCCIP	56647	hgsc.bcm.edu	36	10	127510015	127510015	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	127510015	127510015	C	G	SNP	BCCIP	NM_016567	human	genbank	54_36p	1	reviewed	missense	c.448	p.L150V	0.98	NULL	NULL	-	no_errors
BICC1	80114	hgsc.bcm.edu	36	10	60219152	60219152	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	60219152	60219152	A	C	SNP	BICC1	NM_001080512	human	genbank	54_36p	1	provisional	missense	c.725	p.K242T	1	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain"	-	no_errors
BMI1	648	hgsc.bcm.edu	36	10	22655470	22655470	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	22655470	22655470	C	A	SNP	BMI1	NM_005180	human	genbank	54_36p	1	provisional	missense	c.86	p.T29K	1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
BTAF1	9044	hgsc.bcm.edu	36	10	93709811	93709811	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	93709811	93709811	C	T	SNP	BTAF1	NM_003972	human	genbank	54_36p	1	validated	silent	c.1183	p.L395	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
C10orf113	387638	hgsc.bcm.edu	36	10	21454859	21454859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	21454859	21454859	C	T	SNP	C10orf113	NM_001010896	human	genbank	54_36p	-1	predicted	missense	c.337	p.G113R	1	NULL	NULL	-	no_errors
C10orf118	55088	hgsc.bcm.edu	36	10	115884793	115884793	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	115884793	115884793	T	G	SNP	C10orf118	NM_018017	human	genbank	54_36p	-1	validated	silent	c.1524	p.L508	0.96	NULL	superfamily_Prefoldin	-	no_errors
C10orf12	26148	hgsc.bcm.edu	36	10	98732714	98732714	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	98732714	98732714	C	A	SNP	C10orf12	NM_015652	human	genbank	54_36p	1	predicted	nonsense	c.1577	p.S526*	0.01	NULL	NULL	-	no_errors
C10orf12	26148	hgsc.bcm.edu	36	10	98733842	98733845	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	CTGT	CTGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	98733842	98733845	CTGT	-	DEL	C10orf12	NM_015652	human	genbank	54_36p	1	predicted	frame_shift_del	c.2705_2708	p.V903fs	0.995:0.996:0.997:0.998	NULL	NULL	"(deletion:cds_exon[98731138,98734881])"	no_errors
C10orf137	26098	hgsc.bcm.edu	36	10	127424275	127424275	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	127424275	127424275	C	G	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	missense	c.2498	p.S833C	0.19	NULL	NULL	-	no_errors
FAM196A	642938	hgsc.bcm.edu	36	10	128864305	128864305	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	128864305	128864305	G	T	SNP	C10orf141	NM_001039762	human	genbank	54_36p	-1	validated	nonsense	c.345	p.Y115*	1	NULL	NULL	-	no_errors
C10orf71	118461	hgsc.bcm.edu	36	10	50202322	50202322	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	50202322	50202322	C	A	SNP	C10orf71	NM_199459	human	genbank	54_36p	1	validated	missense	c.1726	p.P576T	0.12	NULL	NULL	-	no_errors
FAM188A	80013	hgsc.bcm.edu	36	10	15916574	15916574	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	15916574	15916574	C	T	SNP	C10orf97	NM_024948	human	genbank	54_36p	-1	validated	silent	c.624	p.L208	1	NULL	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_EF-hand"	-	no_errors
C1QL3	389941	hgsc.bcm.edu	36	10	16596660	16596660	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	16596660	16596660	C	G	SNP	C1QL3	NM_001010908	human	genbank	54_36p	-1	validated	missense	c.641	p.S214T	1	"HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q"	"HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q"	-	no_errors
CASP7	840	hgsc.bcm.edu	36	10	115479248	115479248	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	115479248	115479248	G	T	SNP	CASP7	NM_033338	human	genbank	54_36p	1	reviewed	missense	c.970	p.V324L	1	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14"	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
CCAR1	55749	hgsc.bcm.edu	36	10	70172280	70172280	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	70172280	70172280	A	G	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.466	p.K156E	1	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand"	-	no_errors
CDK1	983	hgsc.bcm.edu	36	10	62209967	62209967	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	62209967	62209967	G	A	SNP	CDC2	NM_001786	human	genbank	54_36p	1	reviewed	splice_site	c.37+1	e1+1	1	-	-	-	no_errors
CHST15	51363	hgsc.bcm.edu	36	10	125770782	125770784	+	In_Frame_Del	DEL	TGT	TGT	-	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	TGT	TGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	125770782	125770784	TGT	-	DEL	GALNAC4S-6ST	NM_015892	human	genbank	54_36p	-1	validated	in_frame_del	c.1327_1325	p.N442in_frame_del	1.000:1.000:1.000	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"(deletion:cds_exon[125770762,125770918])"	no_errors
CHST15	51363	hgsc.bcm.edu	36	10	125788152	125788152	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	125788152	125788152	C	T	SNP	GALNAC4S-6ST	NM_015892	human	genbank	54_36p	-1	validated	nonsense	c.1059	p.W353*	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CHUK	1147	hgsc.bcm.edu	36	10	101968553	101968553	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	101968553	101968553	T	G	SNP	CHUK	NM_001278	human	genbank	54_36p	-1	reviewed	missense	c.709	p.K237Q	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
COL17A1	1308	hgsc.bcm.edu	36	10	105811212	105811212	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	105811212	105811212	A	-	DEL	COL17A1	NM_000494	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.920	p.V307fs	1	NULL	HMMPfam_Collagen	"(deletion:cds_exon[105811153,105811221])"	no_errors
COMMD3	23412	hgsc.bcm.edu	36	10	22645363	22645363	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	22645363	22645363	C	T	SNP	COMMD3	NM_012071	human	genbank	54_36p	1	validated	missense	c.11	p.S4L	1	NULL	HMMPfam_HCaRG	-	no_errors
CPXM2	119587	hgsc.bcm.edu	36	10	125529706	125529706	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	125529706	125529706	A	C	SNP	CPXM2	NM_198148	human	genbank	54_36p	-1	validated	missense	c.945	p.D315E	1	superfamily_Zn-dependent exopeptidases	###############################################################################################################################################################################################################################################################	-	no_errors
CTBP2	1488	hgsc.bcm.edu	36	10	126668113	126668113	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	126668113	126668113	T	-	DEL	CTBP2	NM_022802	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2922	p.K974fs	1	NULL	"superfamily_SSF52283,HMMPfam_2-Hacid_dh,superfamily_NAD(P)-bd,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_3"	"(deletion:cds_exon[126668077,126668257])"	no_errors
CUBN	8029	hgsc.bcm.edu	36	10	17007775	17007775	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	17007775	17007775	G	A	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	silent	c.6276	p.C2092	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
CUBN	8029	hgsc.bcm.edu	36	10	17032057	17032057	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	17032057	17032057	G	C	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.5029	p.R1677G	0	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
CYP26A1	1592	hgsc.bcm.edu	36	10	94825607	94825607	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	94825607	94825607	G	C	SNP	CYP26A1	NM_000783	human	genbank	54_36p	1	reviewed	missense	c.899	p.G300A	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C18	1562	hgsc.bcm.edu	36	10	96485151	96485151	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	96485151	96485151	G	T	SNP	CYP2C18	NM_000772	human	genbank	54_36p	1	reviewed	missense	c.1433	p.R478L	0	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
DDX21	9188	hgsc.bcm.edu	36	10	70393150	70393150	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	70393150	70393150	G	A	SNP	DDX21	NM_004728	human	genbank	54_36p	1	reviewed	silent	c.705	p.G235	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT"	-	no_errors
DHTKD1	55526	hgsc.bcm.edu	36	10	12188281	12188281	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	12188281	12188281	G	A	SNP	DHTKD1	NM_018706	human	genbank	54_36p	1	validated	missense	c.1927	p.V643I	1	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transket_pyr"	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh,HMMPfam_Transket_pyr"	-	no_errors
DIP2C	22982	hgsc.bcm.edu	36	10	381048	381048	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	381048	381048	C	-	DEL	DIP2C	NM_014974	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3234	p.S1079fs	1	"superfamily_SSF56801,HMMPfam_AMP-binding"	"PatternScan_AMP_BINDING,HMMPfam_DMAP_binding,superfamily_SSF56801,HMMPfam_AMP-binding"	"(deletion:cds_exon[380939,381050])"	no_errors
DKK1	22943	hgsc.bcm.edu	36	10	53744229	53744229	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	53744229	53744229	C	A	SNP	DKK1	NM_012242	human	genbank	54_36p	1	reviewed	missense	c.29	p.T10N	0.05	NULL	HMMPfam_Dickkopf_N	-	no_errors
DLG5	9231	hgsc.bcm.edu	36	10	79265600	79265600	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	79265600	79265600	C	A	SNP	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	missense	c.1524	p.E508D	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DNMBP	23268	hgsc.bcm.edu	36	10	101706483	101706483	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	101706483	101706483	G	T	SNP	DNMBP	NM_015221	human	genbank	54_36p	-1	validated	silent	c.738	p.T246	0.98	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,HMMSmart_SM00721,HMMPfam_BAR"	-	no_errors
DUSP13	51207	hgsc.bcm.edu	36	10	76533781	76533781	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	76533781	76533781	C	T	SNP	DUSP13	ENST00000356369	human	ensembl	54_36p	-1	known	missense	c.448	p.G150S	0.01	NULL	"superfamily_SSF52799,HMMPfam_DSPc"	-	no_errors
ELOVL3	83401	hgsc.bcm.edu	36	10	103978216	103978216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	103978216	103978216	G	A	SNP	ELOVL3	NM_152310	human	genbank	54_36p	1	provisional	missense	c.286	p.G96R	0	HMMPfam_ELO	"HMMPfam_ELO,PatternScan_ELO"	-	no_errors
ENTPD1	953	hgsc.bcm.edu	36	10	97589531	97589531	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	97589531	97589531	C	T	SNP	ENTPD1	NM_001098175	human	genbank	54_36p	1	validated	nonsense	c.259	p.Q87*	0.36	HMMPfam_GDA1_CD39	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
FAM171A1	221061	hgsc.bcm.edu	36	10	15336831	15336831	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	15336831	15336831	C	A	SNP	FAM171A1	NM_001010924	human	genbank	54_36p	-1	validated	nonsense	c.472	p.E158*	0.78	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FAM24A	118670	hgsc.bcm.edu	36	10	124662460	124662460	+	Nonstop_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	124662460	124662460	A	T	SNP	FAM24A	NM_001029888	human	genbank	54_36p	1	inferred	nonstop	c.318	p.*106C	0.04	NULL	NULL	-	no_errors
FAM53B	9679	hgsc.bcm.edu	36	10	126360750	126360750	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	126360750	126360750	G	C	SNP	FAM53B	NM_014661	human	genbank	54_36p	-1	validated	missense	c.322	p.P108A	1	NULL	NULL	-	no_errors
FGFR2	2263	hgsc.bcm.edu	36	10	123266854	123266854	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	123266854	123266854	G	C	SNP	FGFR2	NM_000141	human	genbank	54_36p	-1	reviewed	silent	c.1053	p.S351	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
FRMD4A	55691	hgsc.bcm.edu	36	10	13741413	13741414	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	13741413	13741414	CC	-	DEL	FRMD4A	NM_018027	human	genbank	54_36p	-1	validated	frame_shift_del	c.1982_1981	p.G661fs	0.862:0.644	NULL	"superfamily_SSF54236,HMMSmart_B41,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C"	"(deletion:cds_exon[13741329,13741496])"	no_errors
GRID1	2894	hgsc.bcm.edu	36	10	87474267	87474267	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	87474267	87474267	T	C	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	silent	c.1680	p.P560	0.99	"HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
HKDC1	80201	hgsc.bcm.edu	36	10	70662831	70662831	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	70662831	70662831	A	C	SNP	HKDC1	NM_025130	human	genbank	54_36p	1	validated	missense	c.431	p.K144T	0	"HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain"	"HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES"	-	no_errors
HKDC1	80201	hgsc.bcm.edu	36	10	70680114	70680114	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	70680114	70680114	A	G	SNP	HKDC1	NM_025130	human	genbank	54_36p	1	validated	missense	c.1633	p.I545V	1	"HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain"	"HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES,superfamily_Actin-like ATPase domain"	-	no_errors
HNRNPH3	3189	hgsc.bcm.edu	36	10	69771797	69771797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	69771797	69771797	G	A	SNP	HNRNPH3	NM_012207	human	genbank	54_36p	1	reviewed	missense	c.1021	p.G341R	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
IDE	3416	hgsc.bcm.edu	36	10	94259867	94259867	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	94259867	94259867	T	G	SNP	IDE	NM_004969	human	genbank	54_36p	-1	validated	missense	c.817	p.K273Q	1	"superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16_C"	"superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C"	-	no_errors
IDI2	91734	hgsc.bcm.edu	36	10	1056735	1056735	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	1056735	1056735	T	G	SNP	IDI2	NM_033261	human	genbank	54_36p	-1	provisional	missense	c.338	p.Q113P	0.89	"superfamily_NUDIX_hydrolase,HMMPfam_NUDIX"	"superfamily_NUDIX_hydrolase,HMMPfam_NUDIX"	-	no_errors
INPP5F	22876	hgsc.bcm.edu	36	10	121576919	121576919	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	121576919	121576919	G	A	SNP	INPP5F	NM_014937	human	genbank	54_36p	1	reviewed	silent	c.3036	p.S1012	0.98	NULL	HMMPfam_Syja_N	-	no_errors
ITGA8	8516	hgsc.bcm.edu	36	10	15760749	15760749	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	15760749	15760749	C	A	SNP	ITGA8	NM_003638	human	genbank	54_36p	-1	provisional	missense	c.608	p.G203V	1	"superfamily_SSF69318,HMMSmart_Int_alpha"	"superfamily_SSF69318,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ITIH5	80760	hgsc.bcm.edu	36	10	7658975	7658975	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	7658975	7658975	G	C	SNP	ITIH5	NM_030569	human	genbank	54_36p	-1	validated	nonsense	c.1425	p.Y475*	0.96	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA"	"HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
ITIH5	80760	hgsc.bcm.edu	36	10	7661913	7661913	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	7661913	7661913	G	C	SNP	ITIH5	NM_030569	human	genbank	54_36p	-1	validated	missense	c.1229	p.T410R	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like"	-	no_errors
JAKMIP3	282973	hgsc.bcm.edu	36	10	133799528	133799529	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	133799528	133799529	-	T	INS	JAKMIP3	NM_001105521	human	genbank	54_36p	1	provisional	frame_shift_ins	c.1074_1075	p.E358fs	1.000:1.000	NULL	NULL	-	no_errors
JMJD1C	221037	hgsc.bcm.edu	36	10	64624077	64624077	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	64624077	64624077	C	T	SNP	JMJD1C	NM_032776	human	genbank	54_36p	-1	validated	missense	c.5709	p.M1903I	1	NULL	"HMMSmart_SM00558,superfamily_Clavaminate synthase-like,HMMPfam_JmjC"	-	no_errors
KCNMA1	3778	hgsc.bcm.edu	36	10	78399792	78399792	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	78399792	78399792	T	-	DEL	KCNMA1	NM_001014797	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2144	p.K715fs	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a,PatternScan_N6_MTASE"	"(deletion:cds_exon[78399738,78399831])"	no_errors
FAM190B	54462	hgsc.bcm.edu	36	10	86249632	86249632	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	86249632	86249632	T	G	SNP	KIAA1128	NM_018999	human	genbank	54_36p	1	validated	missense	c.2347	p.F783V	1	NULL	NULL	-	no_errors
KIAA1217	56243	hgsc.bcm.edu	36	10	24872409	24872409	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	24872409	24872409	G	T	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	missense	c.4204	p.D1402Y	0.95	NULL	NULL	-	no_errors
KNDC1	85442	hgsc.bcm.edu	36	10	134870381	134870381	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	134870381	134870381	G	T	SNP	KNDC1	NM_152643	human	genbank	54_36p	1	validated	silent	c.3513	p.L1171	1	NULL	"HMMSmart_SM00750,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF"	-	no_errors
LIPK	643414	hgsc.bcm.edu	36	10	90481996	90481996	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	90481996	90481996	C	T	SNP	LIPK	NM_001080518	human	genbank	54_36p	1	provisional	silent	c.504	p.Y168	1	"superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_LIPASE_SER"	"superfamily_SSF53474,HMMPfam_Abhydro_lipase,HMMPfam_Abhydrolase_1,PatternScan_LIPASE_SER"	-	no_errors
LRRC27	80313	hgsc.bcm.edu	36	10	134025046	134025046	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	134025046	134025046	G	A	SNP	LRRC27	NM_030626	human	genbank	54_36p	1	validated	silent	c.1266	p.S422	0	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
MASTL	84930	hgsc.bcm.edu	36	10	27499593	27499593	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	27499593	27499593	A	G	SNP	MASTL	NM_032844	human	genbank	54_36p	1	validated	missense	c.1699	p.M567V	0.01	superfamily_Kinase_like	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X"	-	no_errors
MCM10	55388	hgsc.bcm.edu	36	10	13257630	13257630	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	13257630	13257630	G	T	SNP	MCM10	NM_182751	human	genbank	54_36p	1	reviewed	missense	c.710	p.S237I	0	NULL	"HMMPfam_zf-primase,HMMPfam_Mcm10"	-	no_errors
MKI67	4288	hgsc.bcm.edu	36	10	129793291	129793291	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	129793291	129793291	G	T	SNP	MKI67	NM_002417	human	genbank	54_36p	-1	reviewed	missense	c.6803	p.T2268K	0	HMMPfam_K167R	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMPfam_K167R"	-	no_errors
MKX	283078	hgsc.bcm.edu	36	10	28004277	28004277	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	28004277	28004277	T	C	SNP	MKX	NM_173576	human	genbank	54_36p	-1	validated	missense	c.946	p.N316D	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
MYO3A	53904	hgsc.bcm.edu	36	10	26425326	26425326	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	26425326	26425326	A	C	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.1573	p.N525H	1	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head"	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
MYO3A	53904	hgsc.bcm.edu	36	10	26425327	26425327	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	26425327	26425327	A	G	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.1574	p.N525S	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540"	-	no_errors
MYO3A	53904	hgsc.bcm.edu	36	10	26425327	26425327	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	26425327	26425327	A	G	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.1574	p.N525S	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540"	-	no_errors
MYOZ1	58529	hgsc.bcm.edu	36	10	75064429	75064429	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	75064429	75064429	G	C	SNP	MYOZ1	NM_021245	human	genbank	54_36p	-1	provisional	nonsense	c.321	p.Y107*	0.95	HMMPfam_Calsarcin	HMMPfam_Calsarcin	-	no_errors
MYPN	84665	hgsc.bcm.edu	36	10	69596398	69596398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	69596398	69596398	G	C	SNP	MYPN	NM_032578	human	genbank	54_36p	1	validated	missense	c.1942	p.E648Q	1	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET"	-	no_errors
MYPN	84665	hgsc.bcm.edu	36	10	69625245	69625245	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	69625245	69625245	A	T	SNP	MYPN	NM_032578	human	genbank	54_36p	1	validated	silent	c.3108	p.V1036	0.99	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"PatternScan_ER_TARGET,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
MYST4	23522	hgsc.bcm.edu	36	10	76451776	76451776	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	76451776	76451776	C	T	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	silent	c.3153	p.S1051	1	NULL	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
MYST4	23522	hgsc.bcm.edu	36	10	76451912	76451914	+	In_Frame_Del	DEL	GAA	GAA	-	rs3217598	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	GAA	GAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	76451912	76451914	GAA	-	DEL	MYST4	NM_012330	human	genbank	54_36p	1	validated	in_frame_del	c.3289_3291	p.E1100in_frame_del	0.145:0.135:0.125	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Winged helix DNA-binding domain"	"(deletion:cds_exon[76451645,76451995])"	no_errors
MYST4	23522	hgsc.bcm.edu	36	10	76451914	76451914	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	76451914	76451914	A	G	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	silent	c.3291	p.E1097	0.13	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Winged helix DNA-binding domain"	-	no_errors
MYST4	23522	hgsc.bcm.edu	36	10	76451914	76451914	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	76451914	76451914	A	G	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	silent	c.3291	p.E1097	0.13	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Winged helix DNA-binding domain"	-	no_errors
NDST2	8509	hgsc.bcm.edu	36	10	75233701	75233701	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	75233701	75233701	C	A	SNP	NDST2	NM_003635	human	genbank	54_36p	-1	reviewed	missense	c.1923	p.E641D	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
NRAP	4892	hgsc.bcm.edu	36	10	115392776	115392776	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	115392776	115392776	C	G	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.1122	p.K374N	1	"HMMSmart_SM00227,HMMPfam_Nebulin"	"HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin"	-	no_errors
NRAP	4892	hgsc.bcm.edu	36	10	115413581	115413581	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	115413581	115413581	C	T	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	silent	c.51	p.E17	1	"HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
OPTN	10133	hgsc.bcm.edu	36	10	13206088	13206088	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	13206088	13206088	G	C	SNP	OPTN	NM_001008211	human	genbank	54_36p	1	reviewed	missense	c.970	p.E324Q	1	NULL	NULL	-	no_errors
CDHR1	92211	hgsc.bcm.edu	36	10	85962922	85962922	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	85962922	85962922	G	A	SNP	PCDH21	NM_033100	human	genbank	54_36p	1	reviewed	silent	c.1878	p.T626	0.15	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
PDCD11	22984	hgsc.bcm.edu	36	10	105190044	105190044	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	105190044	105190044	C	T	SNP	PDCD11	NM_014976	human	genbank	54_36p	1	validated	missense	c.4156	p.H1386Y	0.13	"superfamily_Nucleic_acid_OB,HMMSmart_S1"	"superfamily_Nucleic_acid_OB,HMMSmart_S1,HMMPfam_S1,superfamily_SSF48452,HMMSmart_HAT"	-	no_errors
PDE6C	5146	hgsc.bcm.edu	36	10	95390680	95390680	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	95390680	95390680	A	C	SNP	PDE6C	NM_006204	human	genbank	54_36p	1	validated	missense	c.1751	p.K584T	1	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I"	"superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDZD7	79955	hgsc.bcm.edu	36	10	102770424	102770424	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	102770424	102770424	T	C	SNP	PDZD7	NM_024895	human	genbank	54_36p	-1	provisional	missense	c.869	p.E290G	1	"superfamily_PDZ domain-like,HMMSmart_SM00228"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
PFKP	5214	hgsc.bcm.edu	36	10	3168690	3168690	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	3168690	3168690	G	A	SNP	PFKP	NM_002627	human	genbank	54_36p	1	validated	missense	c.2274	p.M758I	1	superfamily_Phosphofructokinase	"HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE"	-	no_errors
PI4K2A	55361	hgsc.bcm.edu	36	10	99406689	99406689	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	99406689	99406689	T	C	SNP	PI4K2A	NM_018425	human	genbank	54_36p	1	provisional	missense	c.890	p.L297S	1	HMMPfam_PI3_PI4_kinase	"PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF56399,HMMPfam_PI3_PI4_kinase"	-	no_errors
PKD2L1	9033	hgsc.bcm.edu	36	10	102046802	102046802	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	102046802	102046802	C	T	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	silent	c.1110	p.E370	1	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
PLXDC2	84898	hgsc.bcm.edu	36	10	20472311	20472311	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	20472311	20472311	C	T	SNP	PLXDC2	NM_032812	human	genbank	54_36p	1	provisional	missense	c.623	p.P208L	1	NULL	"HMMPfam_PSI,HMMSmart_SM00423"	-	no_errors
POLR3A	11128	hgsc.bcm.edu	36	10	79447468	79447468	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	79447468	79447468	G	A	SNP	POLR3A	NM_007055	human	genbank	54_36p	-1	validated	silent	c.1302	p.Y434	0.98	"superfamily_SSF64484,HMMSmart_RPOLA_N,HMMPfam_RNA_pol_Rpb1_2"	"superfamily_SSF64484,HMMPfam_RNA_pol_Rpb1_1,HMMSmart_RPOLA_N,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5"	-	no_errors
PRKCQ	5588	hgsc.bcm.edu	36	10	6573670	6573670	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	6573670	6573670	C	A	SNP	PRKCQ	NM_006257	human	genbank	54_36p	-1	reviewed	silent	c.771	p.R257	0.32	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	###############################################################################################################################################################################################################################################################	-	no_errors
PTCHD3	374308	hgsc.bcm.edu	36	10	27727479	27727479	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	27727479	27727479	T	G	SNP	PTCHD3	NM_001034842	human	genbank	54_36p	-1	validated	missense	c.2054	p.K685T	0.01	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
PTPRE	5791	hgsc.bcm.edu	36	10	129761617	129761617	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	129761617	129761617	C	T	SNP	PTPRE	NM_006504	human	genbank	54_36p	1	reviewed	silent	c.1491	p.I497	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
RASGEF1A	221002	hgsc.bcm.edu	36	10	43016285	43016285	+	Silent	SNP	A	A	G	rs41301585	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	43016285	43016285	A	G	SNP	RASGEF1A	NM_145313	human	genbank	54_36p	-1	validated	silent	c.517	p.L173	0.99	superfamily_Ras GEF	"HMMSmart_SM00229,superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF"	-	no_errors
RBM20	282996	hgsc.bcm.edu	36	10	112571627	112571628	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	112571627	112571628	-	C	INS	RBM20	ENST00000369519	human	ensembl	54_36p	1	known	frame_shift_ins	c.1733_1734	p.I581fs	0.861:0.462	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360"	-	no_start_codon
RET	5979	hgsc.bcm.edu	36	10	42942106	42942106	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	42942106	42942106	G	A	SNP	RET	NM_020975	human	genbank	54_36p	1	reviewed	silent	c.3117	p.P1039	1	NULL	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
SEC23IP	11196	hgsc.bcm.edu	36	10	121648144	121648144	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	121648144	121648144	C	G	SNP	SEC23IP	NM_007190	human	genbank	54_36p	1	reviewed	missense	c.379	p.Q127E	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_DDHD"	-	no_errors
SEMA4G	57715	hgsc.bcm.edu	36	10	102733097	102733097	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	102733097	102733097	A	T	SNP	SEMA4G	NM_017893	human	genbank	54_36p	1	reviewed	missense	c.1751	p.D584V	1	"superfamily_SSF48726,HMMSmart_IG"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
SFXN4	119559	hgsc.bcm.edu	36	10	120910457	120910457	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	120910457	120910457	G	C	SNP	SFXN4	NM_213649	human	genbank	54_36p	-1	validated	silent	c.294	p.P98	1	HMMPfam_Mtc	HMMPfam_Mtc	-	no_errors
SLC16A9	220963	hgsc.bcm.edu	36	10	61083438	61083438	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	61083438	61083438	C	T	SNP	SLC16A9	NM_194298	human	genbank	54_36p	-1	validated	splice_site	c.1351+1	e4+1	1	-	-	-	no_errors
SLC39A12	221074	hgsc.bcm.edu	36	10	18310417	18310417	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	18310417	18310417	G	C	SNP	SLC39A12	NM_152725	human	genbank	54_36p	1	validated	missense	c.1095	p.E365D	1	NULL	HMMPfam_Zip	-	no_errors
SLC39A12	221074	hgsc.bcm.edu	36	10	18329722	18329722	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	18329722	18329722	C	T	SNP	SLC39A12	NM_152725	human	genbank	54_36p	1	validated	missense	c.1610	p.T537M	0.63	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
SMC3	9126	hgsc.bcm.edu	36	10	112333647	112333647	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	112333647	112333647	A	T	SNP	SMC3	NM_005445	human	genbank	54_36p	1	reviewed	missense	c.1028	p.E343V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_BAG domain,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
SORCS3	22986	hgsc.bcm.edu	36	10	106960914	106960914	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	106960914	106960914	G	A	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	missense	c.2291	p.S764N	1	HMMSmart_VPS10	"superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD"	-	no_errors
STK32C	282974	hgsc.bcm.edu	36	10	133889025	133889025	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	133889025	133889025	G	C	SNP	STK32C	NM_173575	human	genbank	54_36p	-1	reviewed	nonsense	c.768	p.Y256*	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
STK32C	282974	hgsc.bcm.edu	36	10	133889027	133889027	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	133889027	133889027	A	T	SNP	STK32C	NM_173575	human	genbank	54_36p	-1	reviewed	missense	c.766	p.Y256N	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
TACC2	10579	hgsc.bcm.edu	36	10	123978986	123978986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	123978986	123978986	C	T	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.8032	p.L2678F	1	NULL	HMMPfam_TACC	-	no_errors
TET1	80312	hgsc.bcm.edu	36	10	70096859	70096859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	10	70096859	70096859	C	T	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	missense	c.4513	p.R1505C	1	NULL	HMMPfam_zf-CXXC	-	no_errors
TMEM180	79847	hgsc.bcm.edu	36	10	104219743	104219743	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	104219743	104219743	G	C	SNP	TMEM180	NM_024789	human	genbank	54_36p	1	validated	missense	c.172	p.V58L	1	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
TMEM180	79847	hgsc.bcm.edu	36	10	104225481	104225481	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	104225481	104225481	T	A	SNP	TMEM180	NM_024789	human	genbank	54_36p	1	validated	missense	c.1304	p.F435Y	1	NULL	superfamily_MFS_gen_substrate_transporter	-	no_errors
TRDMT1	1787	hgsc.bcm.edu	36	10	17241230	17241230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	17241230	17241230	C	A	SNP	TRDMT1	NM_004412	human	genbank	54_36p	-1	reviewed	missense	c.464	p.G155V	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_2"	-	no_errors
TTC18	118491	hgsc.bcm.edu	36	10	74784536	74784536	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	74784536	74784536	T	C	SNP	TTC18	NM_145170	human	genbank	54_36p	-1	provisional	missense	c.25	p.R9G	0.05	NULL	"HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
UNC5B	219699	hgsc.bcm.edu	36	10	72717438	72717438	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	72717438	72717438	C	T	SNP	UNC5B	NM_170744	human	genbank	54_36p	1	validated	missense	c.811	p.R271W	0.99	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	-	no_errors
USP54	159195	hgsc.bcm.edu	36	10	74947312	74947312	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	74947312	74947312	C	T	SNP	USP54	NM_152586	human	genbank	54_36p	-1	provisional	missense	c.2878	p.E960K	0.1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH"	-	no_errors
VCL	7414	hgsc.bcm.edu	36	10	75527073	75527073	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	10	75527073	75527073	C	T	SNP	VCL	NM_014000	human	genbank	54_36p	1	reviewed	missense	c.1849	p.P617S	1	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin"	"superfamily_alpha-catenin/vinculin,HMMPfam_Vinculin,PatternScan_VINCULIN_1,PatternScan_VINCULIN_2"	-	no_errors
XPNPEP1	7511	hgsc.bcm.edu	36	10	111620539	111620539	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	10	111620539	111620539	C	A	SNP	XPNPEP1	NM_020383	human	genbank	54_36p	-1	provisional	missense	c.1507	p.G503C	1	"superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24"	"HMMPfam_Creatinase_N,superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE"	-	no_errors
ZEB1	6935	hgsc.bcm.edu	36	10	31831307	31831307	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	10	31831307	31831307	T	A	SNP	ZEB1	NM_030751	human	genbank	54_36p	1	validated	missense	c.345	p.D115E	1	NULL	"PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX"	-	no_errors
ZNF33A	7581	hgsc.bcm.edu	36	10	38384539	38384539	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	10	38384539	38384539	A	G	SNP	ZNF33A	NM_006954	human	genbank	54_36p	1	validated	missense	c.1481	p.D494G	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZRANB1	54764	hgsc.bcm.edu	36	10	126663551	126663551	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	10	126663551	126663551	A	-	DEL	ZRANB1	NM_017580	human	genbank	54_36p	1	validated	frame_shift_del	c.2127	p.*709fs	0.97	NULL	"HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_SSF90209,HMMPfam_OTU"	"(deletion:cds_exon[126663333,126663551])"	no_errors
ABCG4	64137	hgsc.bcm.edu	36	11	118534634	118534634	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	118534634	118534634	C	A	SNP	ABCG4	NM_022169	human	genbank	54_36p	1	reviewed	missense	c.1325	p.T442N	1	HMMPfam_ABC2_membrane	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane"	-	no_errors
ACCSL	390110	hgsc.bcm.edu	36	11	44026255	44026255	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	44026255	44026255	G	A	SNP	ACCSL	NM_001031854	human	genbank	54_36p	1	validated	silent	c.93	p.E31	0.01	NULL	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	-	no_errors
AHNAK	79026	hgsc.bcm.edu	36	11	62055013	62055013	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	62055013	62055013	G	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.3452	p.P1151R	0.01	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	hgsc.bcm.edu	36	11	62057174	62057174	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	62057174	62057174	C	T	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.1291	p.V431M	0.01	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AMBRA1	55626	hgsc.bcm.edu	36	11	46396117	46396117	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	46396117	46396117	G	C	SNP	AMBRA1	NM_017749	human	genbank	54_36p	-1	validated	missense	c.2768	p.S923C	1	NULL	"HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
AMICA1	120425	hgsc.bcm.edu	36	11	117579494	117579494	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	117579494	117579494	C	A	SNP	AMICA1	NM_001098526	human	genbank	54_36p	-1	validated	missense	c.631	p.D211Y	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
AMPD3	272	hgsc.bcm.edu	36	11	10463033	10463033	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	10463033	10463033	G	T	SNP	AMPD3	NM_000480	human	genbank	54_36p	1	reviewed	missense	c.707	p.G236V	1	NULL	"superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE"	-	no_errors
ANO3	63982	hgsc.bcm.edu	36	11	26617345	26617345	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	26617345	26617345	T	A	SNP	ANO3	NM_031418	human	genbank	54_36p	1	validated	missense	c.2122	p.F708I	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
AP2A2	161	hgsc.bcm.edu	36	11	983375	983375	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	983375	983375	G	A	SNP	AP2A2	NM_012305	human	genbank	54_36p	1	validated	missense	c.1544	p.R515K	0.92	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain"	-	no_errors
APLP2	334	hgsc.bcm.edu	36	11	129498784	129498784	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	129498784	129498784	C	G	SNP	APLP2	NM_001642	human	genbank	54_36p	1	validated	silent	c.990	p.L330	0.99	"superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI"	###############################################################################################################################################################################################################################################################	-	no_errors
ARAP1	116985	hgsc.bcm.edu	36	11	72084460	72084460	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	72084460	72084460	G	-	DEL	ARAP1	NM_001040118	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3371	p.A1124fs	1	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[72084411,72084558])"	no_errors
ARFGAP2	84364	hgsc.bcm.edu	36	11	47154032	47154032	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	47154032	47154032	G	-	DEL	ARFGAP2	NM_032389	human	genbank	54_36p	-1	provisional	frame_shift_del	c.210	p.N71fs	1	"superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap"	"superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap"	"(deletion:cds_exon[47153978,47154050])"	no_errors
ARHGAP1	392	hgsc.bcm.edu	36	11	46659209	46659209	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	46659209	46659209	T	C	SNP	ARHGAP1	NM_004308	human	genbank	54_36p	-1	provisional	missense	c.563	p.Y188C	1	"superfamily_CRAL_TRIO_C,HMMSmart_SEC14"	"superfamily_CRAL_TRIO_C,HMMSmart_SEC14,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
ARHGAP20	57569	hgsc.bcm.edu	36	11	109955430	109955431	+	Frame_Shift_Del	DEL	AG	AG	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	109955430	109955431	AG	-	DEL	ARHGAP20	NM_020809	human	genbank	54_36p	-1	validated	frame_shift_del	c.3450_3449	p.S1150fs	0.005:0.005	NULL	"superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_RA,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"(deletion:cds_exon[109955304,109957159])"	no_errors
ARHGAP20	57569	hgsc.bcm.edu	36	11	109959541	109959541	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	109959541	109959541	T	G	SNP	ARHGAP20	NM_020809	human	genbank	54_36p	-1	validated	missense	c.1546	p.S516R	1	"HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP"	"HMMPfam_RA,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ARHGEF12	23365	hgsc.bcm.edu	36	11	119841167	119841167	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	119841167	119841167	A	T	SNP	ARHGEF12	NM_015313	human	genbank	54_36p	1	reviewed	silent	c.2625	p.P875	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGEF12	23365	hgsc.bcm.edu	36	11	119855911	119855911	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	119855911	119855911	C	T	SNP	ARHGEF12	NM_015313	human	genbank	54_36p	1	reviewed	silent	c.3799	p.L1267	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
B3GAT1	27087	hgsc.bcm.edu	36	11	133762733	133762733	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	133762733	133762733	C	T	SNP	B3GAT1	NM_018644	human	genbank	54_36p	-1	reviewed	missense	c.31	p.V11I	1	NULL	"superfamily_SSF53448,HMMPfam_Glyco_transf_43"	-	no_errors
B4GALNT4	338707	hgsc.bcm.edu	36	11	370167	370167	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	370167	370167	T	C	SNP	B4GALNT4	NM_178537	human	genbank	54_36p	1	provisional	missense	c.2680	p.S894P	1	"HMMPfam_CHGN,superfamily_SSF53448"	"HMMSmart_PA14,HMMPfam_PA14,HMMPfam_CHGN,superfamily_SSF53448"	-	no_errors
BCL9L	283149	hgsc.bcm.edu	36	11	118277095	118277095	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	118277095	118277095	T	A	SNP	BCL9L	NM_182557	human	genbank	54_36p	-1	validated	missense	c.2567	p.Y856F	0.99	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors
BIRC2	329	hgsc.bcm.edu	36	11	101726122	101726122	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	101726122	101726122	C	T	SNP	BIRC2	NM_001166	human	genbank	54_36p	1	reviewed	silent	c.327	p.S109	0.97	"superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR"	"PatternScan_ZF_RING_1,superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
C11orf30	56946	hgsc.bcm.edu	36	11	75852599	75852599	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	75852599	75852599	G	T	SNP	C11orf30	NM_020193	human	genbank	54_36p	1	validated	missense	c.658	p.V220F	1	NULL	HMMPfam_ENT	-	no_errors
C11orf30	56946	hgsc.bcm.edu	36	11	75852606	75852606	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	75852606	75852606	A	T	SNP	C11orf30	NM_020193	human	genbank	54_36p	1	validated	missense	c.665	p.K222M	1	NULL	HMMPfam_ENT	-	no_errors
C11orf63	79864	hgsc.bcm.edu	36	11	122261782	122261782	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	122261782	122261782	A	T	SNP	C11orf63	NM_024806	human	genbank	54_36p	1	validated	missense	c.15	p.K5N	0.01	NULL	NULL	-	no_errors
C11orf87	399947	hgsc.bcm.edu	36	11	108799745	108799745	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	108799745	108799745	C	A	SNP	C11orf87	NM_207645	human	genbank	54_36p	1	predicted	missense	c.176	p.S59Y	1	NULL	NULL	-	no_errors
C2CD3	26005	hgsc.bcm.edu	36	11	73467044	73467044	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	73467044	73467044	T	G	SNP	C2CD3	NM_015531	human	genbank	54_36p	-1	validated	missense	c.4367	p.E1456A	0.01	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
CASP1	834	hgsc.bcm.edu	36	11	104405082	104405082	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	104405082	104405082	C	T	SNP	CASP1	NM_033292	human	genbank	54_36p	-1	reviewed	missense	c.985	p.A329T	0.99	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14"	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,PatternScan_AMP_BINDING,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
CASP5	838	hgsc.bcm.edu	36	11	104383251	104383251	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	104383251	104383251	T	-	DEL	CASP5	NM_004347	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.154	p.T52fs	0	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD"	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,superfamily_SSF52129,HMMSmart_CASc,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	"(deletion:cds_exon[104383020,104383271])"	no_errors
CAT	847	hgsc.bcm.edu	36	11	34439404	34439404	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	34439404	34439404	C	T	SNP	CAT	NM_001752	human	genbank	54_36p	1	validated	missense	c.1087	p.R363C	1	"superfamily_Catalase_N,HMMPfam_Catalase"	"superfamily_Catalase_N,HMMPfam_Catalase,PatternScan_CATALASE_2,PatternScan_CATALASE_1,HMMPfam_Catalase-rel"	-	no_errors
CATSPER1	117144	hgsc.bcm.edu	36	11	65544913	65544913	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	65544913	65544913	G	A	SNP	CATSPER1	NM_053054	human	genbank	54_36p	-1	reviewed	silent	c.1872	p.F624	0.95	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
CATSPER1	117144	hgsc.bcm.edu	36	11	65549931	65549931	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	65549931	65549931	C	T	SNP	CATSPER1	NM_053054	human	genbank	54_36p	-1	reviewed	missense	c.496	p.V166M	0.72	NULL	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
CCDC67	159989	hgsc.bcm.edu	36	11	92742901	92742901	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	92742901	92742901	G	A	SNP	CCDC67	NM_181645	human	genbank	54_36p	1	validated	silent	c.447	p.K149	1	NULL	NULL	-	no_errors
CCDC67	159989	hgsc.bcm.edu	36	11	92744058	92744058	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	92744058	92744058	C	T	SNP	CCDC67	NM_181645	human	genbank	54_36p	1	validated	silent	c.753	p.L251	1	NULL	NULL	-	no_errors
CCDC84	338657	hgsc.bcm.edu	36	11	118391303	118391303	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	118391303	118391303	A	T	SNP	CCDC84	NM_198489	human	genbank	54_36p	1	provisional	silent	c.882	p.A294	0.99	NULL	NULL	-	no_errors
CCDC87	55231	hgsc.bcm.edu	36	11	66116013	66116014	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	66116013	66116014	CC	-	DEL	CCDC87	NM_018219	human	genbank	54_36p	-1	validated	frame_shift_del	c.1050_1049	p.G350fs	0.001:0.000	NULL	NULL	"(deletion:cds_exon[66114513,66117062])"	no_errors
CCKBR	887	hgsc.bcm.edu	36	11	6247615	6247615	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	6247615	6247615	G	T	SNP	CCKBR	NM_176875	human	genbank	54_36p	1	reviewed	missense	c.292	p.V98F	0.98	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CD3E	916	hgsc.bcm.edu	36	11	117689679	117689679	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	117689679	117689679	G	C	SNP	CD3E	NM_000733	human	genbank	54_36p	1	reviewed	missense	c.400	p.V134L	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ITAM,HMMSmart_SM00077"	-	no_errors
CD3E	916	hgsc.bcm.edu	36	11	117691453	117691453	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	117691453	117691453	C	G	SNP	CD3E	NM_000733	human	genbank	54_36p	1	reviewed	missense	c.610	p.Q204E	1	"HMMPfam_ITAM,HMMSmart_SM00077"	"HMMPfam_ITAM,HMMSmart_SM00077,HMMSmart_SM00408,superfamily_Immunoglobulin"	-	no_errors
CHKA	1119	hgsc.bcm.edu	36	11	67594313	67594313	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	67594313	67594313	A	G	SNP	CHKA	NM_001277	human	genbank	54_36p	-1	reviewed	missense	c.788	p.I263T	0.72	"superfamily_Protein kinase-like (PK-like),HMMPfam_Choline_kinase"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Choline_kinase"	-	no_errors
CLP1	10978	hgsc.bcm.edu	36	11	57183719	57183719	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	57183719	57183719	T	A	SNP	CLP1	NM_006831	human	genbank	54_36p	1	validated	silent	c.195	p.V65	0.97	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Clp1"	-	no_errors
CNTF	1270	hgsc.bcm.edu	36	11	58148441	58148441	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	58148441	58148441	G	A	SNP	CNTF	NM_000614	human	genbank	54_36p	1	reviewed	missense	c.473	p.G158D	1	"HMMPfam_CNTF,superfamily_4-helical cytokines"	"HMMPfam_CNTF,superfamily_4-helical cytokines"	-	no_errors
COMMD9	29099	hgsc.bcm.edu	36	11	36252823	36252823	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	36252823	36252823	G	C	SNP	COMMD9	NM_014186	human	genbank	54_36p	-1	validated	missense	c.532	p.L178V	0.99	HMMPfam_HCaRG	HMMPfam_HCaRG	-	no_errors
COPB1	1315	hgsc.bcm.edu	36	11	14455092	14455092	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	14455092	14455092	G	C	SNP	COPB1	NM_016451	human	genbank	54_36p	-1	reviewed	silent	c.1404	p.T468	1	"HMMPfam_Adaptin_N,superfamily_ARM-type_fold"	"HMMPfam_Adaptin_N,superfamily_ARM-type_fold,HMMPfam_Coatamer_beta_C"	-	no_errors
CTR9	9646	hgsc.bcm.edu	36	11	10734923	10734923	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	10734923	10734923	A	G	SNP	CTR9	NM_014633	human	genbank	54_36p	1	provisional	missense	c.554	p.Y185C	1	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
CTSF	8722	hgsc.bcm.edu	36	11	66089927	66089928	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	66089927	66089928	CT	-	DEL	CTSF	NM_003793	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.915_914	p.E305fs	1.000:1.000	"superfamily_SSF54001,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1"	"PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Inhibitor_I29,superfamily_SSF54001,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS"	"(deletion:cds_exon[66089878,66089974])"	no_errors
DCHS1	8642	hgsc.bcm.edu	36	11	6618172	6618172	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	6618172	6618172	G	-	DEL	DCHS1	NM_003737	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1249	p.Q417fs	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1"	"(deletion:cds_exon[6617624,6619420])"	no_errors
DDB1	1642	hgsc.bcm.edu	36	11	60836040	60836040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	60836040	60836040	G	A	SNP	DDB1	NM_001923	human	genbank	54_36p	-1	validated	missense	c.2162	p.P721L	1	NULL	HMMPfam_CPSF_A	-	no_errors
DDB1	1642	hgsc.bcm.edu	36	11	60838245	60838245	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	60838245	60838245	C	G	SNP	DDB1	NM_001923	human	genbank	54_36p	-1	validated	missense	c.1603	p.E535Q	1	NULL	HMMPfam_CPSF_A	-	no_errors
DDX25	29118	hgsc.bcm.edu	36	11	125293764	125293765	+	In_Frame_Ins	INS	-	-	GAT	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	125293764	125293765	-	GAT	INS	DDX25	NM_013264	human	genbank	54_36p	1	reviewed	in_frame_ins	c.728_729	p.245in_frame_insM	1.000:1.000	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
EHD1	10938	hgsc.bcm.edu	36	11	64398552	64398552	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	64398552	64398552	T	-	DEL	EHD1	NM_006795	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.419	p.Q140fs	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1"	"(deletion:cds_exon[64398469,64398566])"	no_errors
ELP4	26610	hgsc.bcm.edu	36	11	31628239	31628239	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	31628239	31628239	G	C	SNP	ELP4	NM_019040	human	genbank	54_36p	1	reviewed	missense	c.1037	p.G346A	1	HMMPfam_PAXNEB	HMMPfam_PAXNEB	-	no_errors
F2	2147	hgsc.bcm.edu	36	11	46697948	46697948	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	46697948	46697948	A	T	SNP	F2	NM_000506	human	genbank	54_36p	1	reviewed	missense	c.200	p.Y67F	0.98	"HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1"	###############################################################################################################################################################################################################################################################	-	no_errors
FADS2	9415	hgsc.bcm.edu	36	11	61352599	61352600	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	61352599	61352600	-	G	INS	FADS2	NM_004265	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.161_162	p.Q57fs	1.000:0.973	"superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5"	"superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_FA_desaturase"	-	no_errors
FAM111A	63901	hgsc.bcm.edu	36	11	58677422	58677422	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	58677422	58677422	C	G	SNP	FAM111A	NM_022074	human	genbank	54_36p	1	validated	missense	c.1705	p.R569G	0	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys	-	no_errors
FCHSD2	9873	hgsc.bcm.edu	36	11	72389705	72389705	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	72389705	72389705	A	-	DEL	FCHSD2	NM_014824	human	genbank	54_36p	-1	validated	frame_shift_del	c.197	p.L66fs	1	NULL	"HMMPfam_FCH,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	"(deletion:cds_exon[72389683,72389827])"	no_errors
GAB2	9846	hgsc.bcm.edu	36	11	77608095	77608095	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	77608095	77608095	G	C	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	silent	c.1902	p.S634	0.27	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
GAB2	9846	hgsc.bcm.edu	36	11	77615537	77615537	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	77615537	77615537	G	A	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	missense	c.829	p.H277Y	0.49	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
GAS2	2620	hgsc.bcm.edu	36	11	22663843	22663843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	22663843	22663843	C	A	SNP	GAS2	NM_005256	human	genbank	54_36p	1	reviewed	missense	c.199	p.L67I	1	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243"	-	no_errors
GDPD5	81544	hgsc.bcm.edu	36	11	74866335	74866335	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	74866335	74866335	G	A	SNP	GDPD5	NM_030792	human	genbank	54_36p	-1	validated	missense	c.94	p.R32C	1	NULL	"superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD"	-	no_errors
GRIK4	2900	hgsc.bcm.edu	36	11	120207880	120207880	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	120207880	120207880	C	T	SNP	GRIK4	NM_014619	human	genbank	54_36p	1	reviewed	silent	c.621	p.I207	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRM5	2915	hgsc.bcm.edu	36	11	87939936	87939936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	87939936	87939936	C	T	SNP	GRM5	NM_000842	human	genbank	54_36p	-1	reviewed	missense	c.2563	p.A855T	0.98	NULL	"superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg"	-	no_errors
HIPK3	10114	hgsc.bcm.edu	36	11	33331534	33331534	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	33331534	33331534	C	T	SNP	HIPK3	NM_005734	human	genbank	54_36p	1	validated	silent	c.3492	p.V1164	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
IGHMBP2	3508	hgsc.bcm.edu	36	11	68460338	68460338	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	68460338	68460338	G	-	DEL	IGHMBP2	NM_002180	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1814	p.R605fs	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMSmart_SM00382,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H,HMMSmart_SM00154"	"(deletion:cds_exon[68460281,68461135])"	no_errors
IGSF9B	22997	hgsc.bcm.edu	36	11	133306213	133306213	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	133306213	133306213	G	A	SNP	IGSF9B	NM_014987	human	genbank	54_36p	-1	validated	silent	c.1395	p.H465	1	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3"	-	no_errors
IL10RA	3587	hgsc.bcm.edu	36	11	117375476	117375476	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	117375476	117375476	C	A	SNP	IL10RA	NM_001558	human	genbank	54_36p	1	reviewed	silent	c.1647	p.G549	0.02	NULL	"HMMPfam_IL10Ra-bind,superfamily_Fibronectin type III"	-	no_errors
INSC	387755	hgsc.bcm.edu	36	11	15090598	15090598	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	15090598	15090598	C	T	SNP	INSC	NM_001031853	human	genbank	54_36p	1	provisional	missense	c.7	p.R3W	0.73	NULL	"PatternScan_PA2_HIS,superfamily_ARM repeat,HMMSmart_SM00185"	-	no_errors
INSC	387755	hgsc.bcm.edu	36	11	15203905	15203906	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	15203905	15203906	CT	-	DEL	INSC	NM_001031853	human	genbank	54_36p	1	provisional	frame_shift_del	c.1266_1267	p.C423fs	1.000:1.000	superfamily_ARM repeat	"HMMSmart_SM00185,PatternScan_PA2_HIS,superfamily_ARM repeat"	"(deletion:cds_exon[15203772,15203950])"	no_errors
KBTBD4	55709	hgsc.bcm.edu	36	11	47551243	47551243	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	47551243	47551243	C	G	SNP	KBTBD4	NM_016506	human	genbank	54_36p	-1	validated	missense	c.1372	p.E458Q	1	superfamily_Gal_oxid_central	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_Kelch_2,superfamily_Gal_oxid_central,HMMPfam_Kelch_1"	-	no_errors
KCNA4	3739	hgsc.bcm.edu	36	11	29990204	29990204	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	29990204	29990204	T	C	SNP	KCNA4	NM_002233	human	genbank	54_36p	-1	reviewed	missense	c.598	p.T200A	1	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	"HMMPfam_K_channel_TID,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KCNJ1	3758	hgsc.bcm.edu	36	11	128214571	128214571	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	128214571	128214571	A	T	SNP	KCNJ1	NM_000220	human	genbank	54_36p	-1	reviewed	missense	c.835	p.F279I	1	"HMMPfam_IRK,superfamily_E set domains"	"superfamily_Voltage-gated potassium channels,HMMPfam_IRK,superfamily_E set domains"	-	no_errors
KCNJ1	3758	hgsc.bcm.edu	36	11	128215201	128215201	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	128215201	128215201	A	-	DEL	KCNJ1	NM_000220	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.205	p.W69fs	1	"HMMPfam_IRK,superfamily_Voltage-gated potassium channels"	"HMMPfam_IRK,superfamily_E set domains,superfamily_Voltage-gated potassium channels"	"(deletion:cds_exon[128214230,128215369])"	no_errors
KCTD14	65987	hgsc.bcm.edu	36	11	77405438	77405438	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	77405438	77405438	G	A	SNP	KCTD14	NM_023930	human	genbank	54_36p	-1	validated	missense	c.617	p.A206V	1	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra"	-	no_errors
KDM2A	22992	hgsc.bcm.edu	36	11	66739976	66739976	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	66739976	66739976	C	T	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.667	p.H223Y	1	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,PatternScan_2FE2S_FER_1,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
KDM2A	22992	hgsc.bcm.edu	36	11	66776851	66776851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	66776851	66776851	G	A	SNP	FBXL11	NM_012308	human	genbank	54_36p	1	reviewed	missense	c.2879	p.S960N	1	superfamily_RNI-like	"HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,PatternScan_2FE2S_FER_1,HMMSmart_SM00367,HMMPfam_JmjC,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,superfamily_RNI-like"	-	no_errors
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	1607696	1607696	G	T	SNP	KRTAP5-5	NM_001001480	human	genbank	54_36p	1	validated	missense	c.50	p.R17L	0.99	NULL	"PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_2FE2S_FER_1"	-	no_errors
LRP5	4041	hgsc.bcm.edu	36	11	67872115	67872115	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	67872115	67872115	G	A	SNP	LRP5	NM_002335	human	genbank	54_36p	1	validated	missense	c.316	p.G106S	1	"superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135"	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
MADD	8567	hgsc.bcm.edu	36	11	47302391	47302391	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	47302391	47302391	G	T	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	splice_site	c.4543-1	e31-1	1	-	-	-	no_errors
MADD	8567	hgsc.bcm.edu	36	11	47307260	47307260	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	47307260	47307260	C	T	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	missense	c.4927	p.R1643W	1	NULL	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN"	-	no_errors
MED19	219541	hgsc.bcm.edu	36	11	57229139	57229139	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	57229139	57229139	G	A	SNP	MED19	NM_153450	human	genbank	54_36p	-1	provisional	missense	c.356	p.P119L	1	HMMPfam_Med19	HMMPfam_Med19	-	no_errors
MEN1	4221	hgsc.bcm.edu	36	11	64329795	64329795	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	64329795	64329795	T	C	SNP	MEN1	NM_000244	human	genbank	54_36p	-1	reviewed	missense	c.1088	p.E363G	1	HMMPfam_Menin	HMMPfam_Menin	-	no_errors
METTL12	751071	hgsc.bcm.edu	36	11	62189931	62189932	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	62189931	62189932	-	C	INS	METTL12	NM_001043229	human	genbank	54_36p	1	validated	frame_shift_ins	c.4_5	p.A3fs	0.199:0.108	NULL	"superfamily_SSF53335,HMMPfam_Methyltransf_11"	-	no_errors
MLL	4297	hgsc.bcm.edu	36	11	117848588	117848588	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	117848588	117848588	G	T	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	nonsense	c.1504	p.E502*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL	4297	hgsc.bcm.edu	36	11	117882474	117882474	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	117882474	117882474	G	C	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	missense	c.10648	p.G3550R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MMP1	4312	hgsc.bcm.edu	36	11	102168642	102168642	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	102168642	102168642	C	G	SNP	MMP1	NM_002421	human	genbank	54_36p	-1	reviewed	missense	c.937	p.E313Q	0.39	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
MMP27	64066	hgsc.bcm.edu	36	11	102069922	102069922	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	102069922	102069922	A	T	SNP	MMP27	NM_022122	human	genbank	54_36p	-1	reviewed	missense	c.1118	p.V373E	0.9	superfamily_Hemopexin-like domain	###############################################################################################################################################################################################################################################################	-	no_errors
MMP3	4314	hgsc.bcm.edu	36	11	102215174	102215174	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	102215174	102215174	G	A	SNP	MMP3	NM_002422	human	genbank	54_36p	-1	reviewed	missense	c.946	p.R316C	1	"superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	###############################################################################################################################################################################################################################################################	-	no_errors
MS4A14	84689	hgsc.bcm.edu	36	11	59927101	59927101	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	59927101	59927101	T	C	SNP	MS4A14	NM_032597	human	genbank	54_36p	1	validated	silent	c.459	p.T153	0	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MS4A3	932	hgsc.bcm.edu	36	11	59586643	59586643	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	59586643	59586643	G	T	SNP	MS4A3	NM_006138	human	genbank	54_36p	1	reviewed	missense	c.283	p.G95C	0.55	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MTL5	9633	hgsc.bcm.edu	36	11	68269133	68269133	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	68269133	68269133	C	G	SNP	MTL5	NM_004923	human	genbank	54_36p	-1	reviewed	missense	c.653	p.G218A	0.99	NULL	HMMPfam_CXC	-	no_errors
MUC15	143662	hgsc.bcm.edu	36	11	26541255	26541255	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	26541255	26541255	G	A	SNP	MUC15	NM_145650	human	genbank	54_36p	-1	validated	silent	c.828	p.D276	0.99	NULL	NULL	-	no_errors
MUC6	4588	hgsc.bcm.edu	36	11	1006041	1006042	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	1006041	1006042	-	C	INS	MUC6	NM_005961	human	genbank	54_36p	-1	validated	frame_shift_ins	c.6760_6759	p.T2253fs	0.391:0.326	NULL	"HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041"	-	no_errors
MUC6	4588	hgsc.bcm.edu	36	11	1007069	1007069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	1007069	1007069	G	A	SNP	MUC6	NM_005961	human	genbank	54_36p	-1	validated	missense	c.5732	p.T1911M	0.02	NULL	"HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
MUC6	4588	hgsc.bcm.edu	36	11	1007773	1007773	+	Silent	SNP	G	G	A	rs57384288	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	1007773	1007773	G	A	SNP	MUC6	NM_005961	human	genbank	54_36p	-1	validated	silent	c.5028	p.S1676	0	NULL	"HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
MUS81	80198	hgsc.bcm.edu	36	11	65389356	65389356	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	65389356	65389356	C	G	SNP	MUS81	NM_025128	human	genbank	54_36p	1	validated	nonsense	c.1491	p.Y497*	1	NULL	"superfamily_DNApol_B_N_like,superfamily_Restrict_endonuc_II-like_core,HMMPfam_ERCC4,HMMSmart_HhH1"	-	no_errors
MYBPC3	4607	hgsc.bcm.edu	36	11	47315686	47315686	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	47315686	47315686	T	G	SNP	MYBPC3	NM_000256	human	genbank	54_36p	-1	reviewed	missense	c.2434	p.K812Q	1	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2"	-	no_errors
NAT10	55226	hgsc.bcm.edu	36	11	34114772	34114772	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	34114772	34114772	G	A	SNP	NAT10	NM_024662	human	genbank	54_36p	1	validated	missense	c.2036	p.S679N	1	NULL	"HMMPfam_DUF1726,HMMPfam_DUF699,superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
NFRKB	4798	hgsc.bcm.edu	36	11	129251844	129251844	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	129251844	129251844	C	T	SNP	NFRKB	NM_006165	human	genbank	54_36p	-1	validated	missense	c.1804	p.V602I	1	NULL	NULL	-	no_errors
NPAS4	266743	hgsc.bcm.edu	36	11	65948061	65948063	+	In_Frame_Del	DEL	TCC	TCC	-	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	TCC	TCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	65948061	65948063	TCC	-	DEL	NPAS4	NM_178864	human	genbank	54_36p	1	validated	in_frame_del	c.1124_1126	p.FP375in_frame_delS	0.683:0.649:0.550	NULL	"HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3"	"(deletion:cds_exon[65947882,65949317])"	no_errors
NR1H3	10062	hgsc.bcm.edu	36	11	47237984	47237984	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	47237984	47237984	G	-	DEL	NR1H3	NM_005693	human	genbank	54_36p	1	validated	frame_shift_del	c.110	p.S37fs	0	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[47237918,47238106])"	no_errors
NR1H3	10062	hgsc.bcm.edu	36	11	47238769	47238769	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	47238769	47238769	C	A	SNP	NR1H3	NM_005693	human	genbank	54_36p	1	validated	missense	c.466	p.R156S	1	"HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	###############################################################################################################################################################################################################################################################	-	no_errors
NTM	50863	hgsc.bcm.edu	36	11	131521478	131521478	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	131521478	131521478	G	A	SNP	NTM	NM_001048209	human	genbank	54_36p	1	reviewed	missense	c.260	p.R87H	1	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
NTM	50863	hgsc.bcm.edu	36	11	131521553	131521553	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	131521553	131521553	C	A	SNP	NTM	NM_001048209	human	genbank	54_36p	1	reviewed	missense	c.335	p.P112H	0.92	"HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726"	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
NUP160	23279	hgsc.bcm.edu	36	11	47771032	47771032	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	47771032	47771032	T	G	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.3332	p.E1111A	1	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
NUP98	4928	hgsc.bcm.edu	36	11	3709314	3709314	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	3709314	3709314	C	T	SNP	NUP98	NM_016320	human	genbank	54_36p	-1	reviewed	missense	c.1613	p.R538H	1	NULL	"superfamily_SSF88633,HMMPfam_Nucleoporin2,superfamily_Peptidase_S59"	-	no_errors
ODZ4	26011	hgsc.bcm.edu	36	11	78050282	78050282	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	78050282	78050282	C	-	DEL	ODZ4	NM_001098816	human	genbank	54_36p	-1	validated	frame_shift_del	c.5425	p.V1809fs	1	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_TolB C-terminal domain,HMMPfam_NHL,HMMPfam_RHS_repeat"	"(deletion:cds_exon[78050142,78050284])"	no_errors
OLFML1	283298	hgsc.bcm.edu	36	11	7466019	7466019	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	7466019	7466019	G	T	SNP	OLFML1	NM_198474	human	genbank	54_36p	1	provisional	missense	c.215	p.G72V	0.99	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
OPCML	4978	hgsc.bcm.edu	36	11	131811293	131811293	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	131811293	131811293	C	T	SNP	OPCML	NM_002545	human	genbank	54_36p	-1	reviewed	missense	c.834	p.M278I	1	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig"	-	no_errors
OPCML	4978	hgsc.bcm.edu	36	11	131812378	131812378	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	131812378	131812378	C	T	SNP	OPCML	NM_002545	human	genbank	54_36p	-1	reviewed	silent	c.612	p.A204	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
OR10A6	390093	hgsc.bcm.edu	36	11	7906244	7906244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	7906244	7906244	G	T	SNP	OR10A6	NM_001004461	human	genbank	54_36p	-1	provisional	missense	c.542	p.T181N	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10W1	81341	hgsc.bcm.edu	36	11	57791172	57791172	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	57791172	57791172	G	T	SNP	OR10W1	NM_207374	human	genbank	54_36p	-1	provisional	nonsense	c.735	p.C245*	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2D2	120776	hgsc.bcm.edu	36	11	6869840	6869840	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	6869840	6869840	A	C	SNP	OR2D2	NM_003700	human	genbank	54_36p	-1	provisional	silent	c.468	p.S156	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR4C11	219429	hgsc.bcm.edu	36	11	55128035	55128035	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	55128035	55128035	G	C	SNP	OR4C11	NM_001004700	human	genbank	54_36p	-1	provisional	missense	c.391	p.P131A	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51I1	390063	hgsc.bcm.edu	36	11	5418528	5418528	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	5418528	5418528	G	A	SNP	OR51I1	NM_001005288	human	genbank	54_36p	-1	provisional	missense	c.793	p.R265C	0.08	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR52N5	390075	hgsc.bcm.edu	36	11	5756228	5756228	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	5756228	5756228	A	-	DEL	OR52N5	NM_001001922	human	genbank	54_36p	-1	provisional	frame_shift_del	c.213	p.F71fs	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[5755466,5756440])"	no_errors
OR56A4	120793	hgsc.bcm.edu	36	11	5980446	5980446	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	5980446	5980446	A	T	SNP	OR56A4	NM_001005179	human	genbank	54_36p	-1	provisional	missense	c.509	p.F170Y	0.1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5B17	219965	hgsc.bcm.edu	36	11	57882755	57882755	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	57882755	57882755	C	T	SNP	OR5B17	NM_001005489	human	genbank	54_36p	-1	provisional	missense	c.364	p.A122T	0.07	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5B17	219965	hgsc.bcm.edu	36	11	57882931	57882931	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	57882931	57882931	T	C	SNP	OR5B17	NM_001005489	human	genbank	54_36p	-1	provisional	missense	c.188	p.N63S	0.99	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5B2	390190	hgsc.bcm.edu	36	11	57946569	57946569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	57946569	57946569	C	T	SNP	OR5B2	NM_001005566	human	genbank	54_36p	-1	provisional	missense	c.742	p.V248I	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M1	390168	hgsc.bcm.edu	36	11	56137239	56137239	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	56137239	56137239	C	T	SNP	OR5M1	NM_001004740	human	genbank	54_36p	-1	provisional	missense	c.316	p.A106T	0.26	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M9	390162	hgsc.bcm.edu	36	11	55986717	55986717	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	55986717	55986717	A	T	SNP	OR5M9	NM_001004743	human	genbank	54_36p	-1	provisional	missense	c.737	p.V246D	0.97	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR6A2	8590	hgsc.bcm.edu	36	11	6773503	6773503	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	6773503	6773503	T	C	SNP	OR6A2	NM_003696	human	genbank	54_36p	-1	provisional	missense	c.13	p.N5D	0.53	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR6T1	219874	hgsc.bcm.edu	36	11	123319595	123319595	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	123319595	123319595	C	T	SNP	OR6T1	NM_001005187	human	genbank	54_36p	-1	provisional	missense	c.161	p.R54H	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8B12	219858	hgsc.bcm.edu	36	11	123918150	123918150	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	123918150	123918150	A	G	SNP	OR8B12	NM_001005195	human	genbank	54_36p	-1	provisional	missense	c.611	p.V204A	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8B2	26595	hgsc.bcm.edu	36	11	123758339	123758339	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	123758339	123758339	G	T	SNP	OR8B2	NM_001005468	human	genbank	54_36p	-1	provisional	silent	c.111	p.V37	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8B4	283162	hgsc.bcm.edu	36	11	123799338	123799338	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	123799338	123799338	C	A	SNP	OR8B4	NM_001005196	human	genbank	54_36p	-1	provisional	missense	c.640	p.V214F	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8D1	283159	hgsc.bcm.edu	36	11	123685530	123685530	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	123685530	123685530	G	C	SNP	OR8D1	NM_001002917	human	genbank	54_36p	-1	provisional	missense	c.343	p.L115V	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8I2	120586	hgsc.bcm.edu	36	11	55617883	55617883	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	55617883	55617883	A	-	DEL	OR8I2	NM_001003750	human	genbank	54_36p	1	provisional	frame_shift_del	c.524	p.H175fs	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[55617360,55618292])"	no_errors
OR8K5	219453	hgsc.bcm.edu	36	11	55683671	55683671	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	55683671	55683671	G	T	SNP	OR8K5	NM_001004058	human	genbank	54_36p	-1	validated	silent	c.699	p.G233	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8U1	219417	hgsc.bcm.edu	36	11	55899702	55899702	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	55899702	55899702	G	A	SNP	OR8U1	NM_001005204	human	genbank	54_36p	1	provisional	silent	c.27	p.A9	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR9G4	283189	hgsc.bcm.edu	36	11	56267006	56267006	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	56267006	56267006	G	C	SNP	OR9G4	NM_001005284	human	genbank	54_36p	-1	provisional	missense	c.858	p.D286E	0.48	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR9G4	283189	hgsc.bcm.edu	36	11	56267121	56267121	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	56267121	56267121	C	T	SNP	OR9G4	NM_001005284	human	genbank	54_36p	-1	provisional	missense	c.743	p.G248E	0.2	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR9Q1	219956	hgsc.bcm.edu	36	11	57704181	57704181	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	57704181	57704181	C	T	SNP	OR9Q1	NM_001005212	human	genbank	54_36p	1	provisional	missense	c.689	p.A230V	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
P2RY2	5029	hgsc.bcm.edu	36	11	72623100	72623100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	72623100	72623100	C	T	SNP	P2RY2	NM_002564	human	genbank	54_36p	1	reviewed	missense	c.248	p.A83V	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PAMR1	25891	hgsc.bcm.edu	36	11	35414034	35414034	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	35414034	35414034	G	T	SNP	DKFZP586H2123	NM_015430	human	genbank	54_36p	-1	validated	nonsense	c.1377	p.C459*	1	"HMMSmart_CCP,superfamily_Complement_control_module,HMMPfam_Sushi"	"HMMSmart_EGF,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	-	no_errors
PAX6	5080	hgsc.bcm.edu	36	11	31778935	31778935	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	31778935	31778935	G	C	SNP	PAX6	NM_001604	human	genbank	54_36p	-1	reviewed	missense	c.445	p.Q149E	1	NULL	"HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PC	5091	hgsc.bcm.edu	36	11	66396081	66396081	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	66396081	66396081	C	G	SNP	PC	NM_000920	human	genbank	54_36p	-1	reviewed	silent	c.126	p.V42	1	"HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like"	###############################################################################################################################################################################################################################################################	-	no_errors
PCSK7	9159	hgsc.bcm.edu	36	11	116583912	116583912	+	Silent	SNP	A	A	C	rs596314	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	116583912	116583912	A	C	SNP	PCSK7	NM_004716	human	genbank	54_36p	-1	reviewed	silent	c.1770	p.L590	0.02	"superfamily_Gal_bind_like,HMMPfam_P_proprotein"	"PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein"	-	no_errors
PDZD3	79849	hgsc.bcm.edu	36	11	118564416	118564417	+	In_Frame_Ins	INS	-	-	TCATAA	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	118564416	118564417	-	TCATAA	INS	PDZD3	NM_024791	human	genbank	54_36p	1	provisional	in_frame_ins	c.963_964	p.CVS322in_frame_ins*	0.062:0.003	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
PEX16	9409	hgsc.bcm.edu	36	11	45893650	45893650	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	45893650	45893650	G	T	SNP	PEX16	NM_057174	human	genbank	54_36p	-1	reviewed	silent	c.405	p.L135	1	HMMPfam_Pex16	HMMPfam_Pex16	-	no_errors
PGR	5241	hgsc.bcm.edu	36	11	100427471	100427471	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	100427471	100427471	T	A	SNP	PGR	NM_000926	human	genbank	54_36p	-1	reviewed	missense	c.2251	p.I751F	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMPfam_Prog_receptor,HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
PHF21A	51317	hgsc.bcm.edu	36	11	45924007	45924007	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	45924007	45924007	G	T	SNP	PHF21A	NM_001101802	human	genbank	54_36p	-1	validated	missense	c.1409	p.P470H	1	NULL	"HMMPfam_AT_hook,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
PLEKHA7	144100	hgsc.bcm.edu	36	11	16849266	16849266	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	16849266	16849266	C	T	SNP	PLEKHA7	NM_175058	human	genbank	54_36p	-1	provisional	silent	c.261	p.T87	0.55	"superfamily_WW domain,HMMSmart_SM00456"	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PPFIA1	8500	hgsc.bcm.edu	36	11	69848644	69848644	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	69848644	69848644	G	A	SNP	PPFIA1	NM_003626	human	genbank	54_36p	1	reviewed	missense	c.410	p.R137Q	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
PPFIA1	8500	hgsc.bcm.edu	36	11	69898704	69898704	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	69898704	69898704	C	T	SNP	PPFIA1	NM_003626	human	genbank	54_36p	1	reviewed	missense	c.3172	p.R1058C	0.99	"HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2"	"HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2"	-	no_errors
PPP2R5B	5526	hgsc.bcm.edu	36	11	64455654	64455654	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	64455654	64455654	G	A	SNP	PPP2R5B	ENST00000359279	human	ensembl	54_36p	1	known	missense	c.1069	p.G357R	1	NULL	HMMPfam_B56	-	no_start_codon
PPP2R5B	5526	hgsc.bcm.edu	36	11	64455917	64455917	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	64455917	64455917	G	T	SNP	PPP2R5B	NM_006244	human	genbank	54_36p	1	reviewed	splice_site	c.1116+1	e10+1	1	-	-	-	no_errors
PSMC3	5702	hgsc.bcm.edu	36	11	47402832	47402832	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	47402832	47402832	C	G	SNP	PSMC3	NM_002804	human	genbank	54_36p	-1	reviewed	missense	c.292	p.D98H	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
PYGM	5837	hgsc.bcm.edu	36	11	64279349	64279349	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	64279349	64279349	A	G	SNP	PYGM	NM_005609	human	genbank	54_36p	-1	validated	missense	c.827	p.I276T	1	"superfamily_SSF53756,HMMPfam_Phosphorylase"	"superfamily_SSF53756,HMMPfam_Phosphorylase,PatternScan_PHOSPHORYLASE"	-	no_errors
QSER1	79832	hgsc.bcm.edu	36	11	32936071	32936071	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	32936071	32936071	C	A	SNP	QSER1	NM_001076786	human	genbank	54_36p	1	provisional	missense	c.4445	p.S1482Y	0.99	NULL	NULL	-	no_errors
SIK3	23387	hgsc.bcm.edu	36	11	116235319	116235319	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	116235319	116235319	G	A	SNP	KIAA0999	NM_025164	human	genbank	54_36p	-1	validated	silent	c.2319	p.R773	0.72	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
RAG2	5897	hgsc.bcm.edu	36	11	36571142	36571142	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	36571142	36571142	A	G	SNP	RAG2	NM_000536	human	genbank	54_36p	-1	reviewed	missense	c.1153	p.C385R	1	HMMPfam_RAG2	"HMMPfam_RAG2,PatternScan_PEROXIDASE_1"	-	no_errors
RIC3	79608	hgsc.bcm.edu	36	11	8147016	8147016	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	8147016	8147016	G	-	DEL	RIC3	NM_024557	human	genbank	54_36p	-1	validated	frame_shift_del	c.97	p.R33fs	1	NULL	NULL	"(deletion:cds_exon[8146989,8147112])"	no_errors
ARHGAP32	9743	hgsc.bcm.edu	36	11	128348122	128348122	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	128348122	128348122	C	A	SNP	RICS	NM_014715	human	genbank	54_36p	-1	validated	silent	c.2400	p.G800	0.11	NULL	"superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
ARHGAP32	9743	hgsc.bcm.edu	36	11	128361112	128361112	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	128361112	128361112	A	C	SNP	RICS	NM_014715	human	genbank	54_36p	-1	validated	missense	c.433	p.Y145D	1	"HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP"	"HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP"	-	no_errors
PPP6R3	55291	hgsc.bcm.edu	36	11	68061779	68061779	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	68061779	68061779	T	G	SNP	SAPS3	NM_018312	human	genbank	54_36p	1	validated	missense	c.71	p.L24R	1	NULL	HMMPfam_SAPS	-	no_errors
SART1	9092	hgsc.bcm.edu	36	11	65501815	65501815	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	65501815	65501815	A	G	SNP	SART1	NM_005146	human	genbank	54_36p	1	reviewed	missense	c.2041	p.I681V	1	HMMPfam_SART-1	HMMPfam_SART-1	-	no_errors
SCUBE2	57758	hgsc.bcm.edu	36	11	9011822	9011822	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	9011822	9011822	A	C	SNP	SCUBE2	NM_020974	human	genbank	54_36p	-1	provisional	missense	c.2013	p.C671W	1	"superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3"	###############################################################################################################################################################################################################################################################	-	no_errors
SCYL1	57410	hgsc.bcm.edu	36	11	65060098	65060098	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	65060098	65060098	C	G	SNP	SCYL1	NM_020680	human	genbank	54_36p	1	reviewed	missense	c.1485	p.H495Q	1	superfamily_ARM repeat	"superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
SCYL1	57410	hgsc.bcm.edu	36	11	65062051	65062051	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	65062051	65062051	A	G	SNP	SCYL1	NM_020680	human	genbank	54_36p	1	reviewed	missense	c.2069	p.E690G	0.86	NULL	"HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat"	-	no_errors
SF1	7536	hgsc.bcm.edu	36	11	64294341	64294341	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	64294341	64294341	C	G	SNP	SF1	NM_004630	human	genbank	54_36p	-1	validated	missense	c.352	p.A118P	1	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
SHANK2	22941	hgsc.bcm.edu	36	11	70009443	70009443	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	70009443	70009443	C	A	SNP	SHANK2	NM_012309	human	genbank	54_36p	-1	reviewed	missense	c.2818	p.D940Y	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
SLC17A6	57084	hgsc.bcm.edu	36	11	22337562	22337562	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	22337562	22337562	C	T	SNP	SLC17A6	NM_020346	human	genbank	54_36p	1	validated	silent	c.486	p.T162	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SLC22A10	387775	hgsc.bcm.edu	36	11	62821382	62821382	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	62821382	62821382	T	C	SNP	SLC22A10	NM_001039752	human	genbank	54_36p	1	validated	silent	c.538	p.L180	0	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC5A12	159963	hgsc.bcm.edu	36	11	26661948	26661948	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	26661948	26661948	C	T	SNP	SLC5A12	NM_178498	human	genbank	54_36p	-1	validated	missense	c.1240	p.G414S	1	NULL	HMMPfam_SSF	-	no_errors
SLC6A5	9152	hgsc.bcm.edu	36	11	20582513	20582513	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	20582513	20582513	A	T	SNP	SLC6A5	NM_004211	human	genbank	54_36p	1	validated	missense	c.646	p.R216W	1	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1"	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
SNX19	399979	hgsc.bcm.edu	36	11	130255845	130255845	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	130255845	130255845	A	-	DEL	SNX19	NM_014758	human	genbank	54_36p	-1	validated	frame_shift_del	c.2640	p.Q881fs	1	HMMPfam_Nexin_C	"HMMPfam_PXA,HMMSmart_SM00313,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_Nexin_C"	"(deletion:cds_exon[130255727,130255911])"	no_errors
SPTBN2	6712	hgsc.bcm.edu	36	11	66214144	66214144	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	66214144	66214144	C	A	SNP	SPTBN2	NM_006946	human	genbank	54_36p	-1	validated	nonsense	c.5752	p.E1918*	1	"HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SRPR	6734	hgsc.bcm.edu	36	11	125642297	125642297	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	125642297	125642297	T	-	DEL	SRPR	NM_003139	human	genbank	54_36p	-1	provisional	frame_shift_del	c.509	p.K170fs	0.99	HMMPfam_SRP-alpha_N	"HMMPfam_SRP-alpha_N,superfamily_SRP54,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_SRP54,PatternScan_SRP54"	"(deletion:cds_exon[125642280,125642440])"	no_errors
SSRP1	6749	hgsc.bcm.edu	36	11	56851820	56851820	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	56851820	56851820	G	A	SNP	SSRP1	NM_003146	human	genbank	54_36p	-1	reviewed	missense	c.1724	p.T575M	1	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	"HMMPfam_SSrecog,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
STX3	6809	hgsc.bcm.edu	36	11	59311176	59311176	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	59311176	59311176	C	A	SNP	STX3	NM_004177	human	genbank	54_36p	1	provisional	missense	c.205	p.P69T	0.99	"HMMSmart_SM00503,superfamily_t-snare proteins,HMMPfam_Syntaxin"	"HMMSmart_SM00503,superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
STX5	6811	hgsc.bcm.edu	36	11	62355160	62355161	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	62355160	62355161	-	G	INS	STX5	NM_003164	human	genbank	54_36p	-1	validated	frame_shift_ins	c.132_131	p.V45fs	0.940:0.981	NULL	"superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
SYT7	9066	hgsc.bcm.edu	36	11	61042737	61042737	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	61042737	61042737	A	T	SNP	SYT7	NM_004200	human	genbank	54_36p	-1	validated	missense	c.1150	p.W384R	1	"superfamily_C2_CaLB,HMMSmart_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SYTL2	54843	hgsc.bcm.edu	36	11	85113015	85113015	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	85113015	85113015	A	T	SNP	SYTL2	NM_206927	human	genbank	54_36p	-1	reviewed	silent	c.2133	p.T711	0.01	NULL	"PatternScan_PHOSPHOPANTETHEINE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
TAF6L	10629	hgsc.bcm.edu	36	11	62299862	62299862	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	62299862	62299862	G	A	SNP	TAF6L	NM_006473	human	genbank	54_36p	1	reviewed	missense	c.31	p.E11K	1	"superfamily_Histone-fold,HMMPfam_TAF,HMMSmart_SM00803"	"superfamily_Histone-fold,HMMPfam_TAF,HMMSmart_SM00803,HMMPfam_DUF1546"	-	no_errors
TMEM135	65084	hgsc.bcm.edu	36	11	86456441	86456441	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	86456441	86456441	G	C	SNP	TMEM135	NM_022918	human	genbank	54_36p	1	provisional	missense	c.199	p.E67Q	1	NULL	NULL	-	no_errors
TMEM136	219902	hgsc.bcm.edu	36	11	119703344	119703344	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	119703344	119703344	G	A	SNP	TMEM136	NM_174926	human	genbank	54_36p	1	provisional	nonsense	c.50	p.W17*	0.06	NULL	HMMPfam_TRAM_LAG1_CLN8	-	no_errors
TMPRSS5	80975	hgsc.bcm.edu	36	11	113065743	113065743	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	113065743	113065743	T	C	SNP	TMPRSS5	NM_030770	human	genbank	54_36p	-1	reviewed	missense	c.1313	p.Y438C	1	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_SRCR-like,PatternScan_SRCR_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
TRIM21	6737	hgsc.bcm.edu	36	11	4364784	4364784	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	4364784	4364784	C	G	SNP	TRIM21	NM_003141	human	genbank	54_36p	-1	reviewed	missense	c.748	p.V250L	0.73	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
TRIM68	55128	hgsc.bcm.edu	36	11	4578596	4578596	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	4578596	4578596	C	T	SNP	TRIM68	NM_018073	human	genbank	54_36p	-1	reviewed	missense	c.944	p.R315H	0.02	HMMSmart_PRY	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
UBE4A	9354	hgsc.bcm.edu	36	11	117765790	117765790	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	117765790	117765790	C	A	SNP	UBE4A	NM_004788	human	genbank	54_36p	1	reviewed	missense	c.2749	p.Q917K	1	HMMPfam_Ufd2P_core	"HMMPfam_Ufd2P_core,HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box"	-	no_errors
UBE4A	9354	hgsc.bcm.edu	36	11	117766648	117766651	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	ACAG	ACAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	117766648	117766651	ACAG	-	DEL	UBE4A	NM_004788	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2856_2859	p.T954fs	0.989:1.000:1.000:1.000	HMMPfam_Ufd2P_core	"HMMPfam_U-box,HMMSmart_SM00504,HMMPfam_Ufd2P_core,superfamily_RING/U-box"	"(deletion:cds_exon[117766582,117766729])"	no_errors
UBQLN3	50613	hgsc.bcm.edu	36	11	5485474	5485474	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	11	5485474	5485474	G	C	SNP	UBQLN3	NM_017481	human	genbank	54_36p	-1	reviewed	missense	c.1891	p.R631G	1	"superfamily_UBA_like,HMMSmart_UBA,HMMPfam_UBA"	"PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin,HMMSmart_STI1,superfamily_UBA_like,HMMSmart_UBA,HMMPfam_UBA"	-	no_errors
USP28	57646	hgsc.bcm.edu	36	11	113206856	113206856	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	113206856	113206856	C	A	SNP	USP28	NM_020886	human	genbank	54_36p	-1	validated	nonsense	c.853	p.E285*	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_UBA-like,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_CPSASE_2"	-	no_errors
USP35	57558	hgsc.bcm.edu	36	11	77598511	77598512	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	77598511	77598512	-	A	INS	USP35	NM_020798	human	genbank	54_36p	1	validated	frame_shift_ins	c.1962_1963	p.T654fs	0.000:0.000	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP47	55031	hgsc.bcm.edu	36	11	11920691	11920691	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	11920691	11920691	G	A	SNP	USP47	NM_017944	human	genbank	54_36p	1	validated	silent	c.2343	p.V781	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
VSIG2	23584	hgsc.bcm.edu	36	11	124122712	124122712	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	124122712	124122712	C	G	SNP	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	missense	c.913	p.G305R	0.07	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
VSIG2	23584	hgsc.bcm.edu	36	11	124123821	124123821	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	11	124123821	124123821	G	A	SNP	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	missense	c.635	p.S212L	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
VWCE	220001	hgsc.bcm.edu	36	11	60810381	60810381	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	60810381	60810381	G	T	SNP	VWCE	NM_152718	human	genbank	54_36p	-1	validated	silent	c.522	p.A174	0.96	"HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181"	###############################################################################################################################################################################################################################################################	-	no_errors
WDR74	54663	hgsc.bcm.edu	36	11	62358533	62358533	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	62358533	62358533	G	C	SNP	WDR74	NM_018093	human	genbank	54_36p	-1	validated	missense	c.661	p.L221V	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
WEE1	7465	hgsc.bcm.edu	36	11	9555328	9555328	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	9555328	9555328	A	G	SNP	WEE1	NM_003390	human	genbank	54_36p	1	reviewed	silent	c.1083	p.R361	0.92	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
WNT11	7481	hgsc.bcm.edu	36	11	75575791	75575791	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	75575791	75575791	C	T	SNP	WNT11	NM_004626	human	genbank	54_36p	-1	reviewed	missense	c.1031	p.C344Y	0.99	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
WNT11	7481	hgsc.bcm.edu	36	11	75575791	75575791	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	11	75575791	75575791	C	T	SNP	WNT11	NM_004626	human	genbank	54_36p	-1	reviewed	missense	c.1031	p.C344Y	0.99	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
ZBTB16	7704	hgsc.bcm.edu	36	11	113439427	113439427	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	11	113439427	113439427	C	T	SNP	ZBTB16	NM_001018011	human	genbank	54_36p	1	reviewed	silent	c.195	p.R65	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2"	-	no_errors
ZDHHC24	254359	hgsc.bcm.edu	36	11	66067851	66067851	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	66067851	66067851	G	T	SNP	ZDHHC24	NM_207340	human	genbank	54_36p	-1	provisional	silent	c.459	p.V153	0.65	NULL	HMMPfam_zf-DHHC	-	no_errors
ZW10	9183	hgsc.bcm.edu	36	11	113115315	113115315	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	113115315	113115315	C	G	SNP	ZW10	NM_004724	human	genbank	54_36p	-1	reviewed	splice_site	c.1584-1	e12-1	1	-	-	-	no_errors
hCG_1646420	644672	hgsc.bcm.edu	36	11	113155760	113155761	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	11	113155760	113155761	-	G	INS	LOC644672	NM_001101389	human	genbank	54_36p	1	inferred	frame_shift_ins	c.33_34	p.L13fs	0.242:0.869	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
A2M	2	hgsc.bcm.edu	36	12	9121687	9121687	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	9121687	9121687	T	G	SNP	A2M	NM_000014	human	genbank	54_36p	-1	reviewed	missense	c.3153	p.Q1051H	0.99	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp"	###############################################################################################################################################################################################################################################################	-	no_errors
ABCD2	225	hgsc.bcm.edu	36	12	38266235	38266235	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	38266235	38266235	A	T	SNP	ABCD2	NM_005164	human	genbank	54_36p	-1	reviewed	missense	c.1778	p.V593D	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"HMMPfam_ABC_membrane_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCD2	225	hgsc.bcm.edu	36	12	38284054	38284054	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	T	T	C	T	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	38284054	38284054	T	C	SNP	ABCD2	NM_005164	human	genbank	54_36p	-1	reviewed	missense	c.1427	p.H476R	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC_membrane_2,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ACACB	32	hgsc.bcm.edu	36	12	108107791	108107791	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	108107791	108107791	C	T	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.1843	p.R615W	1	"superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2"	###############################################################################################################################################################################################################################################################	-	no_errors
ACACB	32	hgsc.bcm.edu	36	12	108156007	108156007	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	108156007	108156007	C	T	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.4211	p.T1404I	0.01	HMMPfam_ACC_central	###############################################################################################################################################################################################################################################################	-	no_errors
ACAD10	80724	hgsc.bcm.edu	36	12	110677862	110677862	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	110677862	110677862	C	T	SNP	ACAD10	NM_025247	human	genbank	54_36p	1	reviewed	missense	c.2969	p.A990V	0.89	"HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ACSS3	79611	hgsc.bcm.edu	36	12	80137972	80137972	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	80137972	80137972	A	G	SNP	ACSS3	NM_024560	human	genbank	54_36p	1	validated	silent	c.1500	p.G500	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ADAMTS20	80070	hgsc.bcm.edu	36	12	42182410	42182421	+	In_Frame_Del	DEL	CATTAAGATCTT	CATTAAGATCTT	-	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	CATTAAGATCTT	CATTAAGATCTT	CATTAAGATCTT	-	CATTAAGATCTT	CATTAAGATCTT	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	42182410	42182421	CATTAAGATCTT	-	DEL	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	in_frame_del	c.679_668	p.EDLN223in_frame_del	0.000:0.000:0.008:0.006:0.004:0.004:0.009:0.055:0.110:0.111:0.109:0.093	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	"(deletion:cds_exon[42182222,42182475])"	no_errors
ALDH2	217	hgsc.bcm.edu	36	12	110714309	110714310	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	110714309	110714310	-	G	INS	ALDH2	NM_000690	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.857_858	p.K289fs	1.000:0.998	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU"	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
AMHR2	269	hgsc.bcm.edu	36	12	52105797	52105797	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	52105797	52105797	G	C	SNP	AMHR2	NM_020547	human	genbank	54_36p	1	validated	missense	c.679	p.V227L	0.92	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220"	"superfamily_Snake toxin-like,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220"	-	no_errors
AMIGO2	347902	hgsc.bcm.edu	36	12	45758633	45758633	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	45758633	45758633	C	T	SNP	AMIGO2	NM_181847	human	genbank	54_36p	-1	validated	silent	c.420	p.L140	0.98	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
ANKRD52	283373	hgsc.bcm.edu	36	12	54933797	54933797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	54933797	54933797	G	A	SNP	ANKRD52	NM_173595	human	genbank	54_36p	-1	validated	missense	c.961	p.R321C	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"HMMSmart_ANK,HMMPfam_Ank,superfamily_ANK"	-	no_errors
ANO4	121601	hgsc.bcm.edu	36	12	100001650	100001650	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	100001650	100001650	G	C	SNP	ANO4	NM_178826	human	genbank	54_36p	1	validated	missense	c.1354	p.G452R	1	NULL	HMMPfam_DUF590	-	no_errors
ANO4	121601	hgsc.bcm.edu	36	12	100029480	100029480	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	100029480	100029480	T	C	SNP	ANO4	NM_178826	human	genbank	54_36p	1	validated	missense	c.2206	p.Y736H	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
ANO6	196527	hgsc.bcm.edu	36	12	44096836	44096836	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	44096836	44096836	G	C	SNP	ANO6	NM_001025356	human	genbank	54_36p	1	validated	missense	c.2099	p.R700T	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
APAF1	317	hgsc.bcm.edu	36	12	97585494	97585494	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	97585494	97585494	G	A	SNP	APAF1	NM_181861	human	genbank	54_36p	1	reviewed	missense	c.1435	p.D479N	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMPfam_CARD,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NB-ARC,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ARID2	196528	hgsc.bcm.edu	36	12	44530469	44530469	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	44530469	44530469	C	T	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.2296	p.P766S	1	NULL	"HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501,superfamily_Winged helix DNA-binding domain,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARID2	196528	hgsc.bcm.edu	36	12	44530530	44530530	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	44530530	44530530	G	C	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.2357	p.G786A	1	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
AVIL	10677	hgsc.bcm.edu	36	12	56487699	56487699	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	56487699	56487699	G	T	SNP	AVIL	NM_006576	human	genbank	54_36p	-1	reviewed	missense	c.1273	p.L425M	1	"superfamily_C-terminal gelsolin-like domain of Sec23/24,superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin"	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
BBS10	79738	hgsc.bcm.edu	36	12	75264523	75264523	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	75264523	75264523	G	C	SNP	BBS10	NM_024685	human	genbank	54_36p	-1	validated	missense	c.1373	p.P458R	0	superfamily_GroEL-ATPase	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1"	-	no_errors
BCL7A	605	hgsc.bcm.edu	36	12	120977237	120977237	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	120977237	120977237	A	C	SNP	BCL7A	NM_020993	human	genbank	54_36p	1	reviewed	silent	c.583	p.R195	0	NULL	HMMPfam_BCL_N	-	no_errors
C12orf10	60314	hgsc.bcm.edu	36	12	51980231	51980231	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	51980231	51980231	G	A	SNP	C12orf10	NM_021640	human	genbank	54_36p	1	validated	missense	c.247	p.E83K	0	HMMPfam_UPF0160	HMMPfam_UPF0160	-	no_errors
C12orf10	60314	hgsc.bcm.edu	36	12	51986779	51986779	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	51986779	51986779	T	A	SNP	C12orf10	NM_021640	human	genbank	54_36p	1	validated	missense	c.814	p.W272R	1	HMMPfam_UPF0160	HMMPfam_UPF0160	-	no_errors
C12orf41	54934	hgsc.bcm.edu	36	12	47359151	47359151	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	47359151	47359151	C	G	SNP	C12orf41	NM_017822	human	genbank	54_36p	-1	validated	missense	c.480	p.Q160H	1	NULL	NULL	-	no_errors
C12orf63	374467	hgsc.bcm.edu	36	12	95674375	95674375	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	95674375	95674375	G	C	SNP	C12orf63	NM_198520	human	genbank	54_36p	1	validated	missense	c.3124	p.E1042Q	1	NULL	NULL	-	no_errors
C1QL4	338761	hgsc.bcm.edu	36	12	48013235	48013236	+	Frame_Shift_Ins	INS	-	-	TT	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	48013235	48013236	-	TT	INS	C1QL4	NM_001008223	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.586_585	p.A195fs	1.000:0.997	"HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q"	"HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q"	-	no_errors
C3AR1	719	hgsc.bcm.edu	36	12	8103788	8103788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	8103788	8103788	C	T	SNP	C3AR1	NM_004054	human	genbank	54_36p	-1	validated	silent	c.261	p.Q87	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CACNA1C	775	hgsc.bcm.edu	36	12	2631107	2631107	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	2631107	2631107	G	T	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.3986	p.R1329L	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CASC1	55259	hgsc.bcm.edu	36	12	25188836	25188836	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	25188836	25188836	C	A	SNP	CASC1	NM_018272	human	genbank	54_36p	-1	validated	missense	c.732	p.E244D	0.46	NULL	NULL	-	no_errors
CCDC64	92558	hgsc.bcm.edu	36	12	118920788	118920788	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	118920788	118920788	G	A	SNP	CCDC64	NM_207311	human	genbank	54_36p	1	validated	silent	c.510	p.L170	1	NULL	NULL	-	no_errors
CCNT1	904	hgsc.bcm.edu	36	12	47379887	47379887	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	47379887	47379887	A	C	SNP	CCNT1	NM_001240	human	genbank	54_36p	-1	reviewed	missense	c.437	p.F146C	1	"superfamily_Cyclin_like,HMMPfam_Cyclin_N"	"PatternScan_CYCLINS,superfamily_Cyclin_like,HMMPfam_Cyclin_N,HMMSmart_CYCLIN"	-	no_errors
CD163	9332	hgsc.bcm.edu	36	12	7527277	7527277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	7527277	7527277	C	T	SNP	CD163	NM_004244	human	genbank	54_36p	-1	validated	missense	c.3041	p.G1014D	0.98	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CD163	9332	hgsc.bcm.edu	36	12	7545208	7545208	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	7545208	7545208	G	C	SNP	CD163	NM_004244	human	genbank	54_36p	-1	validated	missense	c.251	p.A84G	0.01	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
CD63	967	hgsc.bcm.edu	36	12	54406845	54406845	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	54406845	54406845	A	G	SNP	CD63	NM_001780	human	genbank	54_36p	-1	reviewed	missense	c.332	p.V111A	0.84	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
CELA1	1990	hgsc.bcm.edu	36	12	50009865	50009866	+	Frame_Shift_Ins	INS	-	-	G	rs17860363	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	50009865	50009866	-	G	INS	ELA1	NM_001971	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.629_628	p.L210fs	1.000:0.972	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
CHD4	1108	hgsc.bcm.edu	36	12	6574788	6574788	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	6574788	6574788	C	A	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.2094	p.E698D	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	###############################################################################################################################################################################################################################################################	-	no_errors
CHD4	1108	hgsc.bcm.edu	36	12	6575524	6575524	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	6575524	6575524	G	C	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.1933	p.R645G	1	"HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
CHD4	1108	hgsc.bcm.edu	36	12	6580815	6580815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	6580815	6580815	C	A	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.700	p.V234L	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CIT	11113	hgsc.bcm.edu	36	12	118683234	118683234	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	118683234	118683234	G	C	SNP	CIT	NM_007174	human	genbank	54_36p	-1	validated	missense	c.2187	p.D729E	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CLEC4C	170482	hgsc.bcm.edu	36	12	7785372	7785372	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	7785372	7785372	G	C	SNP	CLEC4C	NM_130441	human	genbank	54_36p	-1	reviewed	missense	c.147	p.S49R	0.01	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
DDIT3	1649	hgsc.bcm.edu	36	12	56197026	56197026	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	56197026	56197026	C	T	SNP	DDIT3	NM_004083	human	genbank	54_36p	-1	validated	missense	c.343	p.A115T	1	"HMMSmart_SM00338,HMMPfam_bZIP_2"	"HMMSmart_SM00338,HMMPfam_bZIP_2"	-	no_errors
DDX54	79039	hgsc.bcm.edu	36	12	112084116	112084116	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	112084116	112084116	G	T	SNP	DDX54	NM_024072	human	genbank	54_36p	-1	reviewed	missense	c.2265	p.S755R	1	HMMPfam_DBP10CT	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DBP10CT"	-	no_errors
DDX54	79039	hgsc.bcm.edu	36	12	112085228	112085228	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	112085228	112085228	C	-	DEL	DDX54	NM_024072	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2087	p.S696fs	1	NULL	"PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_DEAD,HMMPfam_DBP10CT,HMMSmart_DEXDc,superfamily_SSF52540"	"(deletion:cds_exon[112085120,112085233])"	no_errors
DDX55	57696	hgsc.bcm.edu	36	12	122656610	122656610	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	122656610	122656610	C	G	SNP	DDX55	NM_020936	human	genbank	54_36p	1	reviewed	missense	c.197	p.P66R	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
DENND5B	160518	hgsc.bcm.edu	36	12	31433568	31433568	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	31433568	31433568	C	A	SNP	DENND5B	NM_144973	human	genbank	54_36p	-1	validated	missense	c.3598	p.G1200W	1	NULL	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_RUN,HMMSmart_SM00593,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT"	-	no_errors
DIP2B	57609	hgsc.bcm.edu	36	12	49360789	49360789	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	49360789	49360789	A	T	SNP	DIP2B	NM_173602	human	genbank	54_36p	1	validated	missense	c.1182	p.E394D	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	-	no_errors
DIP2B	57609	hgsc.bcm.edu	36	12	49384188	49384188	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	49384188	49384188	A	T	SNP	DIP2B	NM_173602	human	genbank	54_36p	1	validated	splice_site	c.2326-2	e20-2	1	-	-	-	no_errors
DNAH10	196385	hgsc.bcm.edu	36	12	122981851	122981851	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	122981851	122981851	G	-	DEL	DNAH10	ENST00000409039	human	ensembl	54_36p	1	known	frame_shift_del	c.12441	p.A4148fs	1	HMMPfam_Dynein_heavy	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	"(deletion:cds_exon[122981841,122981972])"	no_errors
DNAJC14	85406	hgsc.bcm.edu	36	12	54502086	54502086	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	54502086	54502086	G	A	SNP	DNAJC14	NM_032364	human	genbank	54_36p	-1	validated	missense	c.2051	p.P684L	1	NULL	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ"	-	no_errors
E2F7	144455	hgsc.bcm.edu	36	12	75968547	75968547	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	75968547	75968547	T	G	SNP	E2F7	NM_203394	human	genbank	54_36p	-1	validated	missense	c.478	p.S160R	1	"superfamily_Winged helix DNA-binding domain,HMMPfam_E2F_TDP"	"superfamily_Winged helix DNA-binding domain,HMMPfam_E2F_TDP"	-	no_errors
EEA1	8411	hgsc.bcm.edu	36	12	91697092	91697092	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	91697092	91697092	A	G	SNP	EEA1	NM_003566	human	genbank	54_36p	-1	validated	missense	c.3584	p.I1195T	0.2	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE"	-	no_errors
EP400	57634	hgsc.bcm.edu	36	12	131068798	131068798	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	131068798	131068798	C	T	SNP	EP400	NM_015409	human	genbank	54_36p	1	validated	missense	c.4198	p.R1400W	0.92	NULL	"HMMPfam_HSA,HMMSmart_HSA,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Homeodomain_like"	-	no_errors
FAM186B	84070	hgsc.bcm.edu	36	12	48283334	48283334	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	48283334	48283334	T	C	SNP	FAM186B	NM_032130	human	genbank	54_36p	-1	predicted	missense	c.406	p.K136E	0.34	NULL	NULL	-	no_errors
ESYT1	23344	hgsc.bcm.edu	36	12	54808606	54808606	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	54808606	54808606	G	T	SNP	FAM62A	NM_015292	human	genbank	54_36p	1	provisional	missense	c.236	p.G79V	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FGD6	55785	hgsc.bcm.edu	36	12	94090529	94090529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	94090529	94090529	G	T	SNP	FGD6	NM_018351	human	genbank	54_36p	-1	validated	missense	c.2564	p.P855H	0.68	superfamily_DBL homology domain (DH-domain)	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
FGF6	2251	hgsc.bcm.edu	36	12	4424771	4424771	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	4424771	4424771	C	A	SNP	FGF6	NM_020996	human	genbank	54_36p	-1	reviewed	missense	c.227	p.S76I	0.99	NULL	"superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
FMNL3	91010	hgsc.bcm.edu	36	12	48333864	48333864	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	48333864	48333864	C	T	SNP	FMNL3	NM_175736	human	genbank	54_36p	-1	validated	missense	c.1132	p.V378M	1	HMMPfam_Drf_FH3	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
FOXN4	121643	hgsc.bcm.edu	36	12	108202085	108202085	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	108202085	108202085	A	T	SNP	FOXN4	NM_213596	human	genbank	54_36p	-1	validated	missense	c.788	p.F263Y	1	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
GDF3	9573	hgsc.bcm.edu	36	12	7739486	7739486	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	7739486	7739486	C	-	DEL	GDF3	NM_020634	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.106	p.D36fs	0.05	NULL	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	"(deletion:cds_exon[7739324,7739591])"	no_errors
GLI1	2735	hgsc.bcm.edu	36	12	56144865	56144865	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	56144865	56144865	G	A	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	silent	c.336	p.S112	0.98	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GLI1	2735	hgsc.bcm.edu	36	12	56144873	56144873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	56144873	56144873	C	T	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.344	p.T115I	0.99	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
GLI1	2735	hgsc.bcm.edu	36	12	56152069	56152069	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	56152069	56152069	A	T	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.3279	p.R1093S	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
GLT8D2	83468	hgsc.bcm.edu	36	12	102921214	102921214	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	102921214	102921214	T	G	SNP	GLT8D2	NM_031302	human	genbank	54_36p	-1	provisional	missense	c.113	p.D38A	0.91	NULL	"superfamily_SSF53448,HMMPfam_Glyco_transf_8"	-	no_errors
GPR162	27239	hgsc.bcm.edu	36	12	6804977	6804977	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	6804977	6804977	G	A	SNP	GPR162	NM_019858	human	genbank	54_36p	1	reviewed	missense	c.935	p.C312Y	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GPR19	2842	hgsc.bcm.edu	36	12	12705437	12705437	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	12705437	12705437	G	C	SNP	GPR19	NM_006143	human	genbank	54_36p	-1	validated	missense	c.1213	p.P405A	1	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GRIN2B	2904	hgsc.bcm.edu	36	12	13614102	13614102	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	13614102	13614102	C	A	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	missense	c.2288	p.G763V	1	"superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan"	"superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C"	-	no_errors
GRIN2B	2904	hgsc.bcm.edu	36	12	13659413	13659413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	13659413	13659413	C	T	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	missense	c.1556	p.R519Q	1	"HMMSmart_PBPe,superfamily_SSF53850"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_NMDAR2_C,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850"	-	no_errors
GUCY2C	2984	hgsc.bcm.edu	36	12	14685296	14685296	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	14685296	14685296	A	G	SNP	GUCY2C	NM_004963	human	genbank	54_36p	-1	validated	silent	c.2055	p.C685	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
GUCY2C	2984	hgsc.bcm.edu	36	12	14685306	14685306	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	14685306	14685306	G	A	SNP	GUCY2C	NM_004963	human	genbank	54_36p	-1	validated	missense	c.2045	p.T682I	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
HCFC2	29915	hgsc.bcm.edu	36	12	102997488	102997488	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	102997488	102997488	T	C	SNP	HCFC2	NM_013320	human	genbank	54_36p	1	reviewed	silent	c.609	p.S203	0.98	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2"	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3"	-	no_errors
HDAC7	51564	hgsc.bcm.edu	36	12	46466668	46466668	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	46466668	46466668	C	T	SNP	HDAC7	NM_001098416	human	genbank	54_36p	-1	reviewed	missense	c.2428	p.A810T	0.02	"superfamily_SSF52768,HMMPfam_Hist_deacetyl"	"superfamily_SSF52768,HMMPfam_Hist_deacetyl"	-	no_errors
HIP1R	9026	hgsc.bcm.edu	36	12	121906808	121906808	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	121906808	121906808	T	C	SNP	HIP1R	NM_003959	human	genbank	54_36p	1	validated	silent	c.1365	p.S455	0.15	NULL	"HMMPfam_ANTH,superfamily_ENTH_VHS,HMMSmart_ENTH,superfamily_SSF109885,HMMSmart_ILWEQ,HMMPfam_I_LWEQ"	-	no_errors
HIST4H4	121504	hgsc.bcm.edu	36	12	14815177	14815177	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	14815177	14815177	G	A	SNP	HIST4H4	NM_175054	human	genbank	54_36p	-1	reviewed	missense	c.109	p.R37C	1	"superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
HNF1A	6927	hgsc.bcm.edu	36	12	119921766	119921766	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	119921766	119921766	G	A	SNP	HNF1A	NM_000545	human	genbank	54_36p	1	reviewed	missense	c.1721	p.S574N	0.09	HMMPfam_HNF-1A_C	"superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C,HMMPfam_HNF-1A_C"	-	no_errors
HSP90B1	7184	hgsc.bcm.edu	36	12	102848445	102848445	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	102848445	102848445	G	C	SNP	HSP90B1	NM_003299	human	genbank	54_36p	1	provisional	missense	c.22	p.G8R	1	NULL	"superfamily_ATP_bd_ATPase,PatternScan_HSP90,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF110942,PatternScan_ER_TARGET"	-	no_errors
IFFO1	25900	hgsc.bcm.edu	36	12	6530377	6530390	+	Frame_Shift_Del	DEL	CTCATTTACACGGT	CTCATTTACACGGT	-	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	CTCATTTACACGGT	CTCATTTACACGGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	6530377	6530390	CTCATTTACACGGT	-	DEL	IFFO1	NM_001039670	human	genbank	54_36p	-1	validated	frame_shift_del	c.825_812	p.D271fs	1.000:1.000:0.991:0.019:0.022:0.039:0.051:0.985:0.997:0.998:1.000:1.000:0.998:1.000	NULL	PatternScan_LECTIN_LEGUME_BETA	"(deletion:cds_exon[6530368,6530428])"	no_errors
IGFBP6	3489	hgsc.bcm.edu	36	12	51781191	51781191	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	51781191	51781191	G	T	SNP	IGFBP6	NM_002178	human	genbank	54_36p	1	validated	missense	c.580	p.G194C	0.98	"superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY"	"PatternScan_IGFBP_N_1,HMMSmart_IB,HMMPfam_IGFBP,superfamily_Grow_fac_recept,superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY"	-	no_errors
IRAK3	11213	hgsc.bcm.edu	36	12	64924587	64924587	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	64924587	64924587	G	T	SNP	IRAK3	NM_007199	human	genbank	54_36p	1	validated	missense	c.942	p.M314I	0.91	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	-	no_errors
IRAK3	11213	hgsc.bcm.edu	36	12	64925256	64925256	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	64925256	64925256	T	G	SNP	IRAK3	NM_007199	human	genbank	54_36p	1	validated	missense	c.1261	p.L421V	0.28	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	"HMMPfam_Death,HMMSmart_SM00005,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_DEATH domain,HMMPfam_Pkinase"	-	no_errors
ITGB7	3695	hgsc.bcm.edu	36	12	51871969	51871969	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	51871969	51871969	A	G	SNP	ITGB7	NM_000889	human	genbank	54_36p	-1	provisional	missense	c.2257	p.Y753H	1	HMMPfam_Integrin_b_cyt	###############################################################################################################################################################################################################################################################	-	no_errors
ITPR2	3709	hgsc.bcm.edu	36	12	26726809	26726809	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	26726809	26726809	T	C	SNP	ITPR2	NM_002223	human	genbank	54_36p	-1	validated	missense	c.1213	p.I405V	1	"HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)"	"HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans"	-	no_errors
KCNA1	3736	hgsc.bcm.edu	36	12	4891330	4891330	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	4891330	4891330	G	A	SNP	KCNA1	NM_000217	human	genbank	54_36p	1	reviewed	missense	c.525	p.M175I	1	superfamily_SSF81324	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA5	3741	hgsc.bcm.edu	36	12	5024994	5024995	+	Frame_Shift_Del	DEL	GC	GC	-	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	5024994	5024995	GC	-	DEL	KCNA5	NM_002234	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1420_1421	p.A474fs	1.000:1.000	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"(deletion:cds_exon[5023575,5025416])"	no_errors
KCNA6	3742	hgsc.bcm.edu	36	12	4789756	4789757	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	4789756	4789757	-	A	INS	KCNA6	NM_002235	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.288_289	p.L96fs	1.000:1.000	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra"	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA6	3742	hgsc.bcm.edu	36	12	4789939	4789940	+	Frame_Shift_Del	DEL	GC	GC	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	4789939	4789940	GC	-	DEL	KCNA6	NM_002235	human	genbank	54_36p	1	reviewed	frame_shift_del	c.471_472	p.R158fs	1.000:1.000	NULL	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	"(deletion:cds_exon[4789469,4791058])"	no_errors
KCNA6	3742	hgsc.bcm.edu	36	12	4790267	4790267	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	4790267	4790267	G	C	SNP	KCNA6	NM_002235	human	genbank	54_36p	1	reviewed	missense	c.799	p.E267Q	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
KIAA1467	57613	hgsc.bcm.edu	36	12	13112649	13112649	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	13112649	13112649	G	C	SNP	KIAA1467	NM_020853	human	genbank	54_36p	1	validated	splice_site	c.1286+1	e8+1	1	-	-	-	no_errors
SRRM4	84530	hgsc.bcm.edu	36	12	118067871	118067872	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	118067871	118067872	-	C	INS	KIAA1853	NM_194286	human	genbank	54_36p	1	validated	frame_shift_ins	c.1074_1075	p.R358fs	0.953:0.998	NULL	NULL	-	no_errors
KIF5A	3798	hgsc.bcm.edu	36	12	56261522	56261522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	56261522	56261522	C	G	SNP	KIF5A	NM_004984	human	genbank	54_36p	1	reviewed	missense	c.2813	p.T938S	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_Prefoldin"	-	no_errors
KLHDC5	57542	hgsc.bcm.edu	36	12	27835958	27835958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	27835958	27835958	G	A	SNP	KLHDC5	NM_020782	human	genbank	54_36p	1	validated	missense	c.923	p.G308E	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
KLRC2	3822	hgsc.bcm.edu	36	12	10479729	10479729	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	10479729	10479729	C	A	SNP	KLRC2	NM_002260	human	genbank	54_36p	-1	reviewed	nonsense	c.124	p.E42*	0.01	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	-	no_errors
KNTC1	9735	hgsc.bcm.edu	36	12	121613140	121613140	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	121613140	121613140	G	A	SNP	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	silent	c.1545	p.V515	0.99	NULL	"HMMPfam_Rod_C,PatternScan_BZIP_BASIC"	-	no_errors
KNTC1	9735	hgsc.bcm.edu	36	12	121623725	121623726	+	Frame_Shift_Del	DEL	AA	AA	-	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	121623725	121623726	AA	-	DEL	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2223_2224	p.I741fs	0.002:0.045	NULL	"PatternScan_BZIP_BASIC,HMMPfam_Rod_C"	"(deletion:cds_exon[121623642,121623785])"	no_errors
KRT6A	3853	hgsc.bcm.edu	36	12	51168594	51168594	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	51168594	51168594	G	A	SNP	KRT6A	NM_005554	human	genbank	54_36p	-1	reviewed	silent	c.1209	p.A403	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6B	3854	hgsc.bcm.edu	36	12	51130513	51130513	+	Silent	SNP	A	A	G	rs28542657	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	51130513	51130513	A	G	SNP	KRT6B	NM_005555	human	genbank	54_36p	-1	reviewed	silent	c.699	p.G233	0	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT77	374454	hgsc.bcm.edu	36	12	51383082	51383082	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	51383082	51383082	C	G	SNP	KRT77	NM_175078	human	genbank	54_36p	-1	validated	missense	c.404	p.G135A	0.99	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT85	3891	hgsc.bcm.edu	36	12	51047407	51047408	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	51047407	51047408	TT	-	DEL	KRT85	NM_002283	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.50_49	p.N17fs	0.056:0.048	NULL	"HMMPfam_Filament,PatternScan_IF"	"(deletion:cds_exon[51047037,51047456])"	no_errors
LEMD3	23592	hgsc.bcm.edu	36	12	63850524	63850525	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	63850524	63850525	-	C	INS	LEMD3	NM_014319	human	genbank	54_36p	1	validated	frame_shift_ins	c.881_882	p.L297fs	0.003:0.001	NULL	"HMMPfam_LEM,HMMSmart_LEM,superfamily_LEM_like,HMMPfam_MAN1_C,superfamily_SSF54928"	-	no_errors
LEMD3	23592	hgsc.bcm.edu	36	12	63921033	63921033	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	63921033	63921033	G	A	SNP	LEMD3	NM_014319	human	genbank	54_36p	1	validated	missense	c.2204	p.R735Q	1	HMMPfam_MAN1_C	"HMMPfam_LEM,HMMSmart_LEM,superfamily_LEM_like,HMMPfam_MAN1_C,superfamily_SSF54928"	-	no_errors
LRP1	4035	hgsc.bcm.edu	36	12	55838612	55838612	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	55838612	55838612	C	A	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	nonsense	c.1722	p.Y574*	1	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1	4035	hgsc.bcm.edu	36	12	55857204	55857204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	55857204	55857204	G	A	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.4105	p.E1369K	1	"HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1	4035	hgsc.bcm.edu	36	12	55864460	55864460	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	12	55864460	55864460	C	G	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.6144	p.N2048K	0.75	"HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1	4035	hgsc.bcm.edu	36	12	55889230	55889230	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	55889230	55889230	G	T	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	silent	c.12243	p.V4081	1	"HMMPfam_Ldl_recept_b,superfamily_YWTD domain"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1	4035	hgsc.bcm.edu	36	12	55891256	55891256	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	55891256	55891256	G	T	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.12947	p.G4316V	0.86	"HMMSmart_SM00181,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
LRRK2	120892	hgsc.bcm.edu	36	12	38985901	38985901	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	38985901	38985901	C	G	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	silent	c.3825	p.V1275	0.71	"superfamily_SSF52058,HMMPfam_LRR_1"	"superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2"	-	no_errors
MED13L	23389	hgsc.bcm.edu	36	12	114891260	114891260	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	114891260	114891260	G	C	SNP	MED13L	NM_015335	human	genbank	54_36p	-1	validated	missense	c.6093	p.F2031L	1	NULL	HMMPfam_TRAP_240kDa	-	no_errors
MED13L	23389	hgsc.bcm.edu	36	12	114906387	114906387	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	114906387	114906387	T	G	SNP	MED13L	NM_015335	human	genbank	54_36p	-1	validated	missense	c.4512	p.Q1504H	1	HMMPfam_TRAP_240kDa	HMMPfam_TRAP_240kDa	-	no_errors
MGAT4C	25834	hgsc.bcm.edu	36	12	84897953	84897953	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	84897953	84897953	G	A	SNP	MGAT4C	NM_013244	human	genbank	54_36p	-1	validated	nonsense	c.682	p.R228*	1	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
MLEC	9761	hgsc.bcm.edu	36	12	119618610	119618610	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	119618610	119618610	G	C	SNP	MLEC	NM_014730	human	genbank	54_36p	1	validated	missense	c.758	p.R253P	1	NULL	NULL	-	no_errors
MLL2	8085	hgsc.bcm.edu	36	12	47711527	47711527	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	47711527	47711527	C	A	SNP	MLL2	NM_003482	human	genbank	54_36p	-1	validated	missense	c.13228	p.A4410S	0.11	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MUC19	283463	hgsc.bcm.edu	36	12	39108069	39108069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	39108069	39108069	G	A	SNP	MUC19	XM_497341	human	genbank	54_36p	1	model	missense	c.551	p.G184E	0.76	"superfamily_Serine proterase inhibitors,HMMPfam_TIL"	"HMMPfam_VWD,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00216,HMMPfam_C8,superfamily_PMP inhibitors"	-	no_errors
MYBPC1	4604	hgsc.bcm.edu	36	12	100595261	100595261	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	100595261	100595261	G	C	SNP	MYBPC1	NM_002465	human	genbank	54_36p	1	validated	missense	c.3067	p.D1023H	1	superfamily_Fibronectin type III	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
MYO1A	4640	hgsc.bcm.edu	36	12	55717073	55717073	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	55717073	55717073	G	A	SNP	MYO1A	NM_005379	human	genbank	54_36p	-1	reviewed	nonsense	c.2125	p.R709*	1	"superfamily_SSF52540,HMMSmart_IQ,HMMPfam_IQ"	"HMMSmart_MYSc,superfamily_SSF52540,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_TH1"	-	no_errors
MYO1A	4640	hgsc.bcm.edu	36	12	55717626	55717626	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	55717626	55717626	T	A	SNP	MYO1A	NM_005379	human	genbank	54_36p	-1	reviewed	silent	c.2028	p.T676	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_TH1,superfamily_SSF52540"	-	no_errors
NAV3	89795	hgsc.bcm.edu	36	12	77037330	77037330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	12	77037330	77037330	T	C	SNP	NAV3	NM_014903	human	genbank	54_36p	1	validated	missense	c.3223	p.S1075P	0.78	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
NCAPD2	9918	hgsc.bcm.edu	36	12	6505552	6505552	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	6505552	6505552	T	G	SNP	NCAPD2	NM_014865	human	genbank	54_36p	1	validated	missense	c.2406	p.D802E	0.04	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NCKAP1L	3071	hgsc.bcm.edu	36	12	53179515	53179515	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	53179515	53179515	C	T	SNP	NCKAP1L	NM_005337	human	genbank	54_36p	1	reviewed	missense	c.212	p.T71M	1	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
NCOR2	9612	hgsc.bcm.edu	36	12	123405987	123405990	+	Frame_Shift_Del	DEL	TGAG	TGAG	-	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	TGAG	TGAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	123405987	123405990	TGAG	-	DEL	NCOR2	NM_006312	human	genbank	54_36p	-1	validated	frame_shift_del	c.3346_3343	p.L1115fs	1.000:1.000:1.000:1.000	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	"(deletion:cds_exon[123405931,123406070])"	no_errors
NCOR2	9612	hgsc.bcm.edu	36	12	123470525	123470525	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	123470525	123470525	G	T	SNP	NCOR2	NM_006312	human	genbank	54_36p	-1	validated	nonsense	c.1413	p.Y471*	1	"HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding"	"HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding"	-	no_errors
NEUROD4	58158	hgsc.bcm.edu	36	12	53706710	53706710	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	53706710	53706710	A	T	SNP	NEUROD4	NM_021191	human	genbank	54_36p	1	validated	nonsense	c.220	p.K74*	1	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
NOS1	4842	hgsc.bcm.edu	36	12	116210390	116210390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	116210390	116210390	C	G	SNP	NOS1	NM_000620	human	genbank	54_36p	-1	validated	missense	c.999	p.E333D	1	superfamily_Nitric oxide (NO) synthase oxygenase domain	###############################################################################################################################################################################################################################################################	-	no_errors
NR1H4	9971	hgsc.bcm.edu	36	12	99454957	99454957	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	99454957	99454957	G	A	SNP	NR1H4	NM_005123	human	genbank	54_36p	1	provisional	splice_site	c.919+1	e6+1	1	-	-	-	no_errors
OAS1	4938	hgsc.bcm.edu	36	12	111838826	111838826	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	111838826	111838826	G	C	SNP	OAS1	NM_001032409	human	genbank	54_36p	1	reviewed	missense	c.784	p.V262L	0	"HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain"	"superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2"	-	no_errors
OAS3	4940	hgsc.bcm.edu	36	12	111863798	111863798	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	111863798	111863798	G	T	SNP	OAS3	NM_006187	human	genbank	54_36p	1	reviewed	missense	c.218	p.C73F	0	"superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1"	"superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMPfam_NTP_transf_2"	-	no_errors
OLR1	4973	hgsc.bcm.edu	36	12	10210806	10210806	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	10210806	10210806	G	A	SNP	OLR1	NM_002543	human	genbank	54_36p	-1	validated	missense	c.196	p.L66F	0.34	NULL	"PatternScan_C_TYPE_LECTIN_1,superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C"	-	no_errors
PAH	5053	hgsc.bcm.edu	36	12	101761622	101761622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	101761622	101761622	G	A	SNP	PAH	NM_000277	human	genbank	54_36p	-1	reviewed	silent	c.1131	p.Y377	0.32	"superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H"	"superfamily_SSF55021,HMMPfam_ACT,superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL"	-	no_errors
PAH	5053	hgsc.bcm.edu	36	12	101773205	101773205	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	101773205	101773205	T	C	SNP	PAH	NM_000277	human	genbank	54_36p	-1	reviewed	missense	c.545	p.E182G	1	"HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase"	"HMMPfam_ACT,PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase,superfamily_SSF55021"	-	no_errors
PAN2	9924	hgsc.bcm.edu	36	12	55005108	55005108	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	55005108	55005108	A	C	SNP	PAN2	NM_014871	human	genbank	54_36p	-1	validated	silent	c.1551	p.A517	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_WD40 repeat-like,superfamily_Cysteine proteinases,HMMPfam_UCH,superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T"	-	no_errors
PDE3A	5139	hgsc.bcm.edu	36	12	20679213	20679213	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	20679213	20679213	G	C	SNP	PDE3A	NM_000921	human	genbank	54_36p	1	validated	missense	c.1957	p.A653P	0	NULL	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDE6H	5149	hgsc.bcm.edu	36	12	15022348	15022348	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	15022348	15022348	G	C	SNP	PDE6H	NM_006205	human	genbank	54_36p	1	provisional	splice_site	c.134+1	e1+1	1	-	-	-	no_errors
PDZRN4	29951	hgsc.bcm.edu	36	12	40252443	40252445	+	In_Frame_Del	DEL	AAG	AAG	-	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	AAG	AAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	40252443	40252445	AAG	-	DEL	PDZRN4	NM_013377	human	genbank	54_36p	1	validated	in_frame_del	c.821_823	p.E278in_frame_del	0.991:0.868:1.000	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	"(deletion:cds_exon[40252433,40253959])"	no_errors
PEX5	5830	hgsc.bcm.edu	36	12	7253018	7253018	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	7253018	7253018	C	T	SNP	PEX5	NM_000319	human	genbank	54_36p	1	reviewed	silent	c.1521	p.L507	1	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	"superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_1"	-	no_errors
PFDN5	5204	hgsc.bcm.edu	36	12	51976327	51976327	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	51976327	51976327	G	C	SNP	PFDN5	NM_002624	human	genbank	54_36p	1	reviewed	splice_site	c.207+1	e3+1	1	-	-	-	no_errors
PHC1	1911	hgsc.bcm.edu	36	12	8964923	8964923	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	8964923	8964923	G	A	SNP	PHC1	NM_004426	human	genbank	54_36p	1	reviewed	missense	c.301	p.A101T	1	NULL	"HMMPfam_zf-FCS,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
PLXNC1	10154	hgsc.bcm.edu	36	12	93165974	93165974	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	93165974	93165974	G	T	SNP	PLXNC1	NM_005761	human	genbank	54_36p	1	provisional	silent	c.2553	p.V851	0.2	HMMSmart_IPT	"superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_TIG,HMMSmart_IPT,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	-	no_errors
POLE	5426	hgsc.bcm.edu	36	12	131724744	131724744	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	131724744	131724744	G	C	SNP	POLE	NM_006231	human	genbank	54_36p	-1	validated	missense	c.5607	p.N1869K	1	HMMPfam_DUF1744	"superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744"	-	no_errors
PPFIA2	8499	hgsc.bcm.edu	36	12	80257111	80257111	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	80257111	80257111	T	C	SNP	PPFIA2	NM_003625	human	genbank	54_36p	-1	reviewed	missense	c.2527	p.K843E	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
PPHLN1	51535	hgsc.bcm.edu	36	12	41015986	41015986	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	41015986	41015986	A	C	SNP	PPHLN1	NM_016488	human	genbank	54_36p	1	reviewed	silent	c.15	p.G5	1	NULL	NULL	-	no_errors
PPHLN1	51535	hgsc.bcm.edu	36	12	41055006	41055006	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	41055006	41055006	G	C	SNP	PPHLN1	NM_016488	human	genbank	54_36p	1	reviewed	missense	c.374	p.R125T	1	NULL	NULL	-	no_errors
PRB1	5542	hgsc.bcm.edu	36	12	11397670	11397670	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	11397670	11397670	A	G	SNP	PRB1	ENST00000381832	human	ensembl	54_36p	-1	known	missense	c.820	p.S274P	0	NULL	NULL	-	no_errors
PRICKLE1	144165	hgsc.bcm.edu	36	12	41144643	41144643	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	41144643	41144643	C	G	SNP	PRICKLE1	NM_153026	human	genbank	54_36p	-1	validated	missense	c.1460	p.S487T	1	NULL	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
PRPF40B	25766	hgsc.bcm.edu	36	12	48310665	48310665	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	48310665	48310665	C	T	SNP	PRPF40B	NM_001031698	human	genbank	54_36p	1	provisional	missense	c.8	p.P3L	1	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_FF domain,HMMSmart_SM00441,HMMPfam_FF"	-	no_errors
PRR4	11272	hgsc.bcm.edu	36	12	10891057	10891057	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	10891057	10891057	G	A	SNP	PRR4	NM_001098538	human	genbank	54_36p	-1	validated	nonsense	c.316	p.R106*	0	NULL	NULL	-	no_errors
PTPN11	5781	hgsc.bcm.edu	36	12	111400126	111400126	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	111400126	111400126	A	G	SNP	PTPN11	NM_002834	human	genbank	54_36p	1	reviewed	missense	c.1016	p.N339S	0.97	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRR	5801	hgsc.bcm.edu	36	12	69341132	69341132	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	69341132	69341132	T	C	SNP	PTPRR	NM_002849	human	genbank	54_36p	-1	reviewed	missense	c.1621	p.T541A	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
RARG	5916	hgsc.bcm.edu	36	12	51907577	51907577	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	51907577	51907577	C	T	SNP	RARG	NM_000966	human	genbank	54_36p	-1	validated	missense	c.20	p.R7Q	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
RIMBP2	23504	hgsc.bcm.edu	36	12	129463119	129463119	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	129463119	129463119	A	G	SNP	RIMBP2	NM_015347	human	genbank	54_36p	-1	validated	missense	c.2819	p.I940T	1	superfamily_SH3-domain	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060"	-	no_errors
RND1	27289	hgsc.bcm.edu	36	12	47545777	47545777	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	47545777	47545777	C	A	SNP	RND1	NM_014470	human	genbank	54_36p	-1	provisional	missense	c.41	p.C14F	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	-	no_errors
RNF10	9921	hgsc.bcm.edu	36	12	119489034	119489034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	119489034	119489034	G	A	SNP	RNF10	NM_014868	human	genbank	54_36p	1	reviewed	missense	c.1909	p.E637K	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
RNFT2	84900	hgsc.bcm.edu	36	12	115771534	115771534	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	115771534	115771534	G	C	SNP	RNFT2	NM_001109903	human	genbank	54_36p	1	validated	missense	c.1233	p.W411C	1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
SDSL	113675	hgsc.bcm.edu	36	12	112358951	112358951	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	112358951	112358951	C	-	DEL	SDSL	NM_138432	human	genbank	54_36p	1	provisional	frame_shift_del	c.684	p.L229fs	0.94	"superfamily_PyrdxlP-dep_enz_bsu,HMMPfam_PALP"	"superfamily_PyrdxlP-dep_enz_bsu,HMMPfam_PALP,PatternScan_DEHYDRATASE_SER_THR"	"(deletion:cds_exon[112358939,112359063])"	no_errors
SRSF2IP	9169	hgsc.bcm.edu	36	12	44606752	44606756	+	Frame_Shift_Del	DEL	TTTTC	TTTTC	-	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	TTTTC	TTTTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	44606752	44606756	TTTTC	-	DEL	SFRS2IP	NM_004719	human	genbank	54_36p	-1	validated	frame_shift_del	c.2999_2995	p.E999fs	0.809:0.948:0.981:0.990:0.991	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_RING_1"	"(deletion:cds_exon[44606192,44608909])"	no_errors
SRSF2IP	9169	hgsc.bcm.edu	36	12	44628582	44628582	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	44628582	44628582	T	A	SNP	SFRS2IP	NM_004719	human	genbank	54_36p	-1	validated	missense	c.303	p.Q101H	1	superfamily_RING/U-box	"HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_RING/U-box"	-	no_errors
SILV	6490	hgsc.bcm.edu	36	12	54641463	54641463	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	54641463	54641463	G	C	SNP	SILV	NM_006928	human	genbank	54_36p	-1	validated	missense	c.239	p.A80G	1	NULL	"superfamily_PKD domain,HMMPfam_PKD,HMMSmart_SM00089"	-	no_errors
SLC2A14	144195	hgsc.bcm.edu	36	12	7861875	7861875	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	7861875	7861875	A	C	SNP	SLC2A14	NM_153449	human	genbank	54_36p	-1	provisional	missense	c.1163	p.F388C	1	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SLC2A3	6515	hgsc.bcm.edu	36	12	7966868	7966868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	7966868	7966868	C	T	SNP	SLC2A3	NM_006931	human	genbank	54_36p	-1	validated	missense	c.1088	p.S363N	0.97	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SLC4A8	9498	hgsc.bcm.edu	36	12	50175052	50175052	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	50175052	50175052	C	T	SNP	SLC4A8	NM_001039960	human	genbank	54_36p	1	validated	silent	c.2826	p.I942	1	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC6A15	55117	hgsc.bcm.edu	36	12	83809943	83809943	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	83809943	83809943	C	T	SNP	SLC6A15	NM_182767	human	genbank	54_36p	-1	validated	missense	c.88	p.A30T	0.99	NULL	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLCO1C1	53919	hgsc.bcm.edu	36	12	20759467	20759467	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	20759467	20759467	C	A	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.657	p.D219E	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
SLCO1C1	53919	hgsc.bcm.edu	36	12	20767338	20767338	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	20767338	20767338	C	A	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1069	p.L357I	0.42	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter"	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
STAB2	55576	hgsc.bcm.edu	36	12	102613465	102613465	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	102613465	102613465	T	A	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.3383	p.V1128D	0.38	"superfamily_BIgH3_FAS1,HMMPfam_Fasciclin,HMMSmart_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	hgsc.bcm.edu	36	12	102629420	102629420	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	102629420	102629420	G	A	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.4330	p.A1444T	1	HMMSmart_EGF	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	hgsc.bcm.edu	36	12	102660312	102660312	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	102660312	102660312	G	C	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	splice_site	c.5882-1	e56-1	1	-	-	-	no_errors
STAB2	55576	hgsc.bcm.edu	36	12	102677123	102677123	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	102677123	102677123	T	G	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.7190	p.L2397R	0.44	"HMMSmart_FAS1,superfamily_BIgH3_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	hgsc.bcm.edu	36	12	102679209	102679209	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	102679209	102679209	C	T	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.7250	p.T2417M	0.98	"HMMSmart_FAS1,superfamily_BIgH3_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
STAC3	246329	hgsc.bcm.edu	36	12	55924221	55924221	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	55924221	55924221	G	A	SNP	STAC3	NM_145064	human	genbank	54_36p	-1	provisional	missense	c.913	p.R305W	1	"superfamily_SH3-domain,HMMSmart_SM00326"	"superfamily_Cysteine-rich domain,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
STAC3	246329	hgsc.bcm.edu	36	12	55929311	55929311	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	55929311	55929311	C	A	SNP	STAC3	NM_145064	human	genbank	54_36p	-1	provisional	missense	c.114	p.K38N	0.47	NULL	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_SH3_2,superfamily_Cysteine-rich domain"	-	no_errors
STAT6	6778	hgsc.bcm.edu	36	12	55782944	55782944	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	55782944	55782944	C	G	SNP	STAT6	NM_003153	human	genbank	54_36p	-1	reviewed	missense	c.1240	p.V414L	1	"HMMPfam_STAT_bind,superfamily_p53-like transcription factors"	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,HMMPfam_STAT_alpha,superfamily_STAT,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2,HMMSmart_SM00252"	-	no_errors
STYK1	55359	hgsc.bcm.edu	36	12	10675157	10675157	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	12	10675157	10675157	G	C	SNP	STYK1	NM_018423	human	genbank	54_36p	-1	validated	missense	c.205	p.P69A	0.06	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
SYT1	6857	hgsc.bcm.edu	36	12	78203762	78203762	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	78203762	78203762	T	C	SNP	SYT1	NM_005639	human	genbank	54_36p	1	validated	silent	c.231	p.F77	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
TAS2R20	259295	hgsc.bcm.edu	36	12	11041321	11041321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	11041321	11041321	C	T	SNP	TAS2R20	NM_176889	human	genbank	54_36p	-1	validated	missense	c.421	p.V141I	0	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
TAS2R42	353164	hgsc.bcm.edu	36	12	11230144	11230144	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	11230144	11230144	C	G	SNP	TAS2R42	NM_181429	human	genbank	54_36p	-1	provisional	missense	c.667	p.D223H	0.05	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
TBX3	6926	hgsc.bcm.edu	36	12	113599811	113599811	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	113599811	113599811	C	-	DEL	TBX3	NM_016569	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.898	p.A300fs	1	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box"	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	"(deletion:cds_exon[113599768,113599844])"	no_errors
TBX5	6910	hgsc.bcm.edu	36	12	113317074	113317074	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	113317074	113317074	A	T	SNP	TBX5	NM_000192	human	genbank	54_36p	-1	reviewed	missense	c.518	p.L173Q	1	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box"	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TBX5	6910	hgsc.bcm.edu	36	12	113324089	113324089	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	113324089	113324089	A	G	SNP	TBX5	NM_000192	human	genbank	54_36p	-1	reviewed	missense	c.167	p.V56A	1	"HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors"	"HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1"	-	no_errors
TDG	6996	hgsc.bcm.edu	36	12	102897858	102897859	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	102897858	102897859	-	A	INS	TDG	NM_003211	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.286_287	p.I98fs	1.000:1.000	NULL	"superfamily_UDNA_glycsylseSF,HMMPfam_UDG"	-	no_errors
TIMELESS	8914	hgsc.bcm.edu	36	12	55102188	55102188	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	55102188	55102188	C	T	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	silent	c.2493	p.R831	1	HMMPfam_TIMELESS_C	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
TIMELESS	8914	hgsc.bcm.edu	36	12	55103428	55103428	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	12	55103428	55103428	T	C	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	missense	c.2189	p.H730R	1	HMMPfam_TIMELESS_C	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
TMEM132D	121256	hgsc.bcm.edu	36	12	128124502	128124502	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	128124502	128124502	G	T	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	missense	c.3171	p.D1057E	0.13	NULL	NULL	-	no_errors
TMEM132D	121256	hgsc.bcm.edu	36	12	128124941	128124941	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	128124941	128124941	T	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	missense	c.2732	p.K911I	1	NULL	NULL	-	no_errors
TMPO	7112	hgsc.bcm.edu	36	12	97445894	97445894	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	97445894	97445894	T	C	SNP	TMPO	NM_003276	human	genbank	54_36p	1	provisional	missense	c.379	p.Y127H	1	"superfamily_LEM domain,HMMPfam_LEM,HMMSmart_SM00540"	"HMMPfam_Thymopoietin,superfamily_LEM domain,HMMPfam_LEM,HMMSmart_SM00540"	-	no_errors
TMPO	7112	hgsc.bcm.edu	36	12	97465572	97465572	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	12	97465572	97465572	T	C	SNP	TMPO	NM_001032283	human	genbank	54_36p	1	provisional	silent	c.1170	p.Y390	0.99	NULL	"HMMPfam_LEM,HMMSmart_SM00540,superfamily_LEM domain,HMMPfam_Thymopoietin"	-	no_errors
TNFRSF1A	7132	hgsc.bcm.edu	36	12	6312834	6312834	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	6312834	6312834	G	C	SNP	TNFRSF1A	NM_001065	human	genbank	54_36p	-1	reviewed	missense	c.432	p.F144L	0	"superfamily_TNF receptor-like,PatternScan_TNFR_NGFR_1,HMMPfam_TNFR_c6,HMMSmart_SM00208"	"superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	-	no_errors
TRPV4	59341	hgsc.bcm.edu	36	12	108706569	108706569	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	108706569	108706569	T	C	SNP	TRPV4	NM_021625	human	genbank	54_36p	-1	reviewed	missense	c.2393	p.D798G	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
UHRF1BP1L	23074	hgsc.bcm.edu	36	12	98977382	98977382	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	12	98977382	98977382	T	C	SNP	UHRF1BP1L	NM_015054	human	genbank	54_36p	-1	validated	missense	c.1804	p.I602V	0.92	NULL	NULL	-	no_errors
UNG	7374	hgsc.bcm.edu	36	12	108020600	108020600	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	108020600	108020600	T	C	SNP	UNG	NM_003362	human	genbank	54_36p	1	reviewed	missense	c.86	p.L29P	0	NULL	"superfamily_DNA glycosylase,HMMPfam_UDG,PatternScan_U_DNA_GLYCOSYLASE"	-	no_errors
VEZT	55591	hgsc.bcm.edu	36	12	94205647	94205647	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	94205647	94205647	C	G	SNP	VEZT	NM_017599	human	genbank	54_36p	1	validated	missense	c.1405	p.P469A	1	NULL	NULL	-	no_errors
VPS33A	65082	hgsc.bcm.edu	36	12	121311781	121311781	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	121311781	121311781	C	A	SNP	VPS33A	NM_022916	human	genbank	54_36p	-1	validated	nonsense	c.463	p.E155*	1	"superfamily_Sec1-like,HMMPfam_Sec1"	"superfamily_Sec1-like,HMMPfam_Sec1"	-	no_errors
VWF	7450	hgsc.bcm.edu	36	12	5947587	5947587	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	5947587	5947587	C	T	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	missense	c.7737	p.M2579I	0.08	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VWF	7450	hgsc.bcm.edu	36	12	5947592	5947592	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	12	5947592	5947592	G	C	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	missense	c.7732	p.R2578G	0.94	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VWF	7450	hgsc.bcm.edu	36	12	5973307	5973308	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	12	5973307	5973308	-	C	INS	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.6580_6579	p.R2193fs	1.000:1.000	HMMPfam_C8	###############################################################################################################################################################################################################################################################	-	no_errors
ABCC4	10257	hgsc.bcm.edu	36	13	94656996	94656996	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	13	94656996	94656996	C	T	SNP	ABCC4	NM_005845	human	genbank	54_36p	-1	reviewed	missense	c.952	p.G318R	1	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ALOX5AP	241	hgsc.bcm.edu	36	13	30216290	30216290	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	13	30216290	30216290	C	T	SNP	ALOX5AP	NM_001629	human	genbank	54_36p	1	reviewed	missense	c.164	p.T55I	1	"HMMPfam_MAPEG,PatternScan_FLAP_GST2_LTC4S"	"HMMPfam_MAPEG,PatternScan_FLAP_GST2_LTC4S"	-	no_errors
ATP8A2	51761	hgsc.bcm.edu	36	13	24941210	24941211	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	24941210	24941211	-	T	INS	ATP8A2	NM_016529	human	genbank	54_36p	1	validated	frame_shift_ins	c.172_173	p.Y59fs	1.000:1.000	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
BRCA2	675	hgsc.bcm.edu	36	13	31809921	31809921	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	31809921	31809921	A	T	SNP	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	missense	c.3429	p.E1143D	0	NULL	"HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3"	-	no_errors
BRCA2	675	hgsc.bcm.edu	36	13	31834675	31834675	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	-	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	31834675	31834675	T	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.7821	p.P2608fs	0.95	"HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical"	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31834660,31834830])"	no_errors
BRCA2	675	hgsc.bcm.edu	36	13	31870481	31870481	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	31870481	31870481	G	-	DEL	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	frame_shift_del	c.9831	p.P3278fs	0.87	NULL	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	"(deletion:cds_exon[31870299,31870907])"	no_errors
CCNA1	8900	hgsc.bcm.edu	36	13	35913329	35913329	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	35913329	35913329	T	A	SNP	CCNA1	NM_003914	human	genbank	54_36p	1	reviewed	silent	c.1173	p.A391	0.96	"HMMPfam_Cyclin_C,superfamily_Cyclin-like,HMMSmart_SM00385"	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_SM00385,HMMPfam_Cyclin_C"	-	no_errors
CCNA1	8900	hgsc.bcm.edu	36	13	35913329	35913329	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	35913329	35913329	T	A	SNP	CCNA1	NM_003914	human	genbank	54_36p	1	reviewed	silent	c.1173	p.A391	0.96	"HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like"	"HMMPfam_Cyclin_C,HMMSmart_SM00385,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin-like"	-	no_errors
CENPJ	55835	hgsc.bcm.edu	36	13	24382157	24382157	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	24382157	24382157	C	G	SNP	CENPJ	NM_018451	human	genbank	54_36p	-1	reviewed	missense	c.636	p.E212D	0.05	NULL	HMMPfam_Tcp10_C	-	no_errors
CSNK1A1L	122011	hgsc.bcm.edu	36	13	36577077	36577077	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	36577077	36577077	C	T	SNP	CSNK1A1L	NM_145203	human	genbank	54_36p	-1	provisional	missense	c.317	p.R106K	1	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DACH1	1602	hgsc.bcm.edu	36	13	71045086	71045086	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	71045086	71045086	C	T	SNP	DACH1	NM_080759	human	genbank	54_36p	-1	reviewed	missense	c.1192	p.A398T	1	NULL	"HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain"	-	no_errors
DCLK1	9201	hgsc.bcm.edu	36	13	35584117	35584117	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	35584117	35584117	C	T	SNP	DCLK1	NM_004734	human	genbank	54_36p	-1	validated	silent	c.612	p.L204	1	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX"	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ERCC5	2073	hgsc.bcm.edu	36	13	102322697	102322697	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	102322697	102322697	G	T	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	missense	c.2827	p.D943Y	1	superfamily_5' to 3' exonuclease C-terminal subdomain	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
FLT3	2322	hgsc.bcm.edu	36	13	27487292	27487292	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	27487292	27487292	A	C	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	splice_site	c.2753+2	e22+2	1	-	-	-	no_errors
FRY	10129	hgsc.bcm.edu	36	13	31629510	31629510	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	31629510	31629510	G	C	SNP	FRY	NM_023037	human	genbank	54_36p	1	validated	missense	c.1752	p.Q584H	1	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
FRY	10129	hgsc.bcm.edu	36	13	31733792	31733792	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	31733792	31733792	C	G	SNP	FRY	NM_023037	human	genbank	54_36p	1	validated	missense	c.7456	p.R2486G	1	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
GJB6	10804	hgsc.bcm.edu	36	13	19695042	19695042	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	19695042	19695042	A	T	SNP	GJB6	NM_006783	human	genbank	54_36p	-1	reviewed	missense	c.578	p.I193N	0.93	HMMPfam_Connexin_CCC	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
GRK1	6011	hgsc.bcm.edu	36	13	113373856	113373856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	113373856	113373856	C	T	SNP	GRK1	NM_002929	human	genbank	54_36p	1	reviewed	missense	c.869	p.P290L	0	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_stop_codon:bad_bp_length_for_coding_region
GRTP1	79774	hgsc.bcm.edu	36	13	113057664	113057664	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	113057664	113057664	G	A	SNP	GRTP1	NM_024719	human	genbank	54_36p	-1	validated	silent	c.315	p.P105	0.25	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,PatternScan_SOMATOTROPIN_2"	-	no_errors
HS6ST3	266722	hgsc.bcm.edu	36	13	96282995	96282995	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	96282995	96282995	G	A	SNP	HS6ST3	NM_153456	human	genbank	54_36p	1	validated	missense	c.958	p.V320M	1	HMMPfam_HS6ST	HMMPfam_HS6ST	-	no_errors
HTR2A	3356	hgsc.bcm.edu	36	13	46307727	46307727	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	13	46307727	46307727	A	G	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	missense	c.662	p.V221A	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HTR2A	3356	hgsc.bcm.edu	36	13	46364629	46364629	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	46364629	46364629	C	T	SNP	HTR2A	NM_000621	human	genbank	54_36p	-1	validated	silent	c.510	p.S170	0.09	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
IFT88	8100	hgsc.bcm.edu	36	13	20128512	20128512	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	20128512	20128512	C	G	SNP	IFT88	NM_175605	human	genbank	54_36p	1	reviewed	missense	c.2038	p.Q680E	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"HMMSmart_SM00028,superfamily_TPR-like,HMMSmart_SM00671,HMMPfam_TPR_1"	-	no_errors
IPO5	3843	hgsc.bcm.edu	36	13	97450847	97450847	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	97450847	97450847	G	T	SNP	IPO5	NM_002271	human	genbank	54_36p	1	reviewed	missense	c.1109	p.G370V	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_HEAT"	-	no_errors
KDELC1	79070	hgsc.bcm.edu	36	13	102239516	102239516	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	102239516	102239516	C	T	SNP	KDELC1	NM_024089	human	genbank	54_36p	-1	reviewed	silent	c.1140	p.L380	0.9	"HMMPfam_DUF821,HMMSmart_CAP10"	"HMMPfam_Filamin,superfamily_Ig_E-set,HMMSmart_IG_FLMN,HMMPfam_DUF821,HMMSmart_CAP10,PatternScan_ER_TARGET"	-	no_errors
KIAA0564	23078	hgsc.bcm.edu	36	13	41283438	41283438	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	41283438	41283438	C	G	SNP	KIAA0564	NM_015058	human	genbank	54_36p	-1	validated	silent	c.1986	p.L662	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMSmart_SM00382,superfamily_vWA-like,HMMSmart_SM00327"	-	no_errors
KL	9365	hgsc.bcm.edu	36	13	32536043	32536043	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	32536043	32536043	G	A	SNP	KL	NM_004795	human	genbank	54_36p	1	reviewed	missense	c.2759	p.R920H	0.73	superfamily_(Trans)glycosidases	"HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F1_2"	-	no_errors
LATS2	26524	hgsc.bcm.edu	36	13	20517951	20517951	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	20517951	20517951	G	A	SNP	LATS2	NM_014572	human	genbank	54_36p	-1	reviewed	missense	c.215	p.P72L	1	NULL	"HMMPfam_UBA,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
LRRC63	220416	hgsc.bcm.edu	36	13	45700067	45700067	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	45700067	45700067	C	A	SNP	LOC220416	XM_001716651	human	genbank	54_36p	1	model	missense	c.505	p.Q169K	0	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
MYCBP2	23077	hgsc.bcm.edu	36	13	76593607	76593607	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	76593607	76593607	G	A	SNP	MYCBP2	NM_015057	human	genbank	54_36p	-1	validated	missense	c.7928	p.S2643F	0.99	NULL	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184"	-	no_errors
NALCN	259232	hgsc.bcm.edu	36	13	100595214	100595214	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	100595214	100595214	T	C	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.1874	p.E625G	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
NALCN	259232	hgsc.bcm.edu	36	13	100827077	100827077	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	100827077	100827077	A	G	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	missense	c.619	p.C207R	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
NUPL1	9818	hgsc.bcm.edu	36	13	24808372	24808372	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	24808372	24808372	C	A	SNP	NUPL1	NM_001008565	human	genbank	54_36p	1	reviewed	missense	c.1457	p.A486E	1	NULL	NULL	-	no_errors
PABPC3	5042	hgsc.bcm.edu	36	13	24569333	24569333	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	13	24569333	24569333	A	-	DEL	PABPC3	NM_030979	human	genbank	54_36p	1	validated	frame_shift_del	c.997	p.F335fs	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361,superfamily_PABC (PABP) domain,HMMPfam_PABP,HMMSmart_SM00517"	"(deletion:cds_exon[24568337,24570232])"	no_errors
PABPC3	5042	hgsc.bcm.edu	36	13	24569668	24569668	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	24569668	24569668	G	C	SNP	PABPC3	NM_030979	human	genbank	54_36p	1	validated	missense	c.1332	p.K444N	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain,HMMSmart_SM00361,superfamily_RNA-binding domain RBD"	-	no_errors
PAN3	255967	hgsc.bcm.edu	36	13	27749443	27749443	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	27749443	27749443	C	G	SNP	PAN3	NM_175854	human	genbank	54_36p	1	validated	missense	c.1519	p.R507G	1	superfamily_Kinase_like	superfamily_Kinase_like	-	no_errors
PCDH20	64881	hgsc.bcm.edu	36	13	60884665	60884665	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	13	60884665	60884665	A	C	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	missense	c.1487	p.V496G	1	"superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1"	"HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDH20	64881	hgsc.bcm.edu	36	13	60885447	60885447	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	60885447	60885447	C	A	SNP	PCDH20	NM_022843	human	genbank	54_36p	-1	validated	missense	c.705	p.E235D	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PDS5B	23047	hgsc.bcm.edu	36	13	32139958	32139958	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	32139958	32139958	G	C	SNP	PDS5B	NM_015032	human	genbank	54_36p	1	validated	missense	c.682	p.A228P	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook"	-	no_errors
RASA3	22821	hgsc.bcm.edu	36	13	113783234	113783235	+	In_Frame_Ins	INS	-	-	CTC	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	113783234	113783235	-	CTC	INS	RASA3	NM_007368	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1861_1860	p.620in_frame_insE	0.979:0.743	"superfamily_Rho_GAP,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK"	-	no_errors
RASA3	22821	hgsc.bcm.edu	36	13	113835644	113835644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	13	113835644	113835644	T	A	SNP	RASA3	NM_007368	human	genbank	54_36p	-1	reviewed	missense	c.262	p.R88W	1	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	"HMMPfam_C2,HMMSmart_C2,HMMPfam_BTK,HMMSmart_BTK,HMMPfam_PH,HMMSmart_PH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_C2_CaLB,superfamily_SSF50729"	-	no_errors
RCBTB2	1102	hgsc.bcm.edu	36	13	47984006	47984006	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	47984006	47984006	G	A	SNP	RCBTB2	NM_001268	human	genbank	54_36p	-1	reviewed	silent	c.684	p.V228	1	"superfamily_RCC1/BLIP-II,HMMPfam_RCC1"	"superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
RNF113B	140432	hgsc.bcm.edu	36	13	97626796	97626796	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	97626796	97626796	C	A	SNP	RNF113B	NM_178861	human	genbank	54_36p	-1	validated	missense	c.696	p.E232D	1	NULL	"superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
SACS	26278	hgsc.bcm.edu	36	13	22802819	22802819	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	22802819	22802819	G	C	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	missense	c.12755	p.T4252S	1	NULL	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Chaperone J-domain,HMMPfam_HEPN,superfamily_Nucleotidyltransferase substrate binding subunit/domain,HMMSmart_SM00748"	-	no_errors
SACS	26278	hgsc.bcm.edu	36	13	22808712	22808712	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	22808712	22808712	G	C	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	missense	c.6862	p.L2288V	1	NULL	"superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Nucleotidyltransferase substrate binding subunit/domain"	-	no_errors
SETDB2	83852	hgsc.bcm.edu	36	13	48953233	48953233	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	48953233	48953233	C	A	SNP	SETDB2	NM_031915	human	genbank	54_36p	1	provisional	missense	c.1172	p.T391K	0.99	"superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	"HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
SIAH3	283514	hgsc.bcm.edu	36	13	45255914	45255914	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	45255914	45255914	C	T	SNP	SIAH3	NM_198849	human	genbank	54_36p	-1	validated	missense	c.415	p.A139T	0.18	"superfamily_Traf_like,HMMPfam_Sina"	"superfamily_Traf_like,HMMPfam_Sina"	-	no_errors
SLAIN1	122060	hgsc.bcm.edu	36	13	77233213	77233213	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	77233213	77233213	T	G	SNP	SLAIN1	NM_001040153	human	genbank	54_36p	1	validated	missense	c.941	p.L314R	1	NULL	NULL	-	no_errors
SLITRK1	114798	hgsc.bcm.edu	36	13	83353110	83353110	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	83353110	83353110	G	T	SNP	SLITRK1	NM_052910	human	genbank	54_36p	-1	validated	silent	c.534	p.P178	1	superfamily_SSF52058	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMSmart_LRRNT"	-	no_errors
SPATA13	221178	hgsc.bcm.edu	36	13	23762949	23762949	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	23762949	23762949	A	C	SNP	SPATA13	NM_153023	human	genbank	54_36p	1	provisional	missense	c.1132	p.T378P	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"PatternScan_PROTAMINE_P1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
TFDP1	7027	hgsc.bcm.edu	36	13	113335471	113335471	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	113335471	113335471	G	A	SNP	TFDP1	NM_007111	human	genbank	54_36p	1	reviewed	missense	c.344	p.G115D	1	"HMMPfam_E2F_TDP,superfamily_SSF46785"	"HMMPfam_E2F_TDP,superfamily_SSF46785,HMMPfam_DP"	-	no_errors
TFDP1	7027	hgsc.bcm.edu	36	13	113336853	113336853	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	13	113336853	113336853	G	T	SNP	TFDP1	NM_007111	human	genbank	54_36p	1	reviewed	nonsense	c.622	p.E208*	1	HMMPfam_DP	"HMMPfam_E2F_TDP,HMMPfam_DP,superfamily_SSF46785"	-	no_errors
THSD1	55901	hgsc.bcm.edu	36	13	51869792	51869792	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	51869792	51869792	A	T	SNP	THSD1	NM_018676	human	genbank	54_36p	-1	reviewed	silent	c.597	p.G199	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
UGGT2	55757	hgsc.bcm.edu	36	13	95377328	95377328	+	Nonsense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	95377328	95377328	T	A	SNP	UGCGL2	NM_020121	human	genbank	54_36p	-1	provisional	nonsense	c.2155	p.K719*	1	NULL	"HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases"	-	no_errors
ZC3H13	23091	hgsc.bcm.edu	36	13	45517620	45517620	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	45517620	45517620	G	A	SNP	ZC3H13	NM_015070	human	genbank	54_36p	-1	validated	silent	c.24	p.V8	1	NULL	"superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH"	-	no_errors
ZMYM2	7750	hgsc.bcm.edu	36	13	19536635	19536635	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	13	19536635	19536635	G	A	SNP	ZMYM2	NM_003453	human	genbank	54_36p	1	validated	missense	c.3082	p.V1028I	1	NULL	"HMMPfam_zf-FCS,HMMSmart_TRASH"	-	no_errors
ZNF828	283489	hgsc.bcm.edu	36	13	114108839	114108839	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	13	114108839	114108839	G	C	SNP	ZNF828	NM_032436	human	genbank	54_36p	1	provisional	missense	c.1420	p.G474R	0.12	NULL	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ADCK1	57143	hgsc.bcm.edu	36	14	77467723	77467723	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	77467723	77467723	G	A	SNP	ADCK1	NM_020421	human	genbank	54_36p	1	validated	missense	c.1316	p.R439H	1	NULL	"superfamily_Kinase_like,HMMPfam_ABC1"	-	no_errors
ADCY4	196883	hgsc.bcm.edu	36	14	23857808	23857808	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	23857808	23857808	G	T	SNP	ADCY4	NM_139247	human	genbank	54_36p	-1	reviewed	silent	c.2973	p.P991	0.98	"HMMSmart_SM00044,HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain"	"HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
AHNAK2	113146	hgsc.bcm.edu	36	14	104475974	104475975	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	104475974	104475975	-	G	INS	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	frame_shift_ins	c.16859_16858	p.Q5620fs	0.000:0.000	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin"	-	no_errors
AHNAK2	113146	hgsc.bcm.edu	36	14	104484364	104484365	+	Frame_Shift_Del	DEL	GA	GA	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	104484364	104484365	GA	-	DEL	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	frame_shift_del	c.8469_8468	p.F2823fs	0.003:0.009	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	"(deletion:cds_exon[104475445,104492181])"	no_errors
AK7	122481	hgsc.bcm.edu	36	14	95992538	95992538	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	95992538	95992538	T	G	SNP	AK7	NM_152327	human	genbank	54_36p	1	validated	missense	c.1200	p.D400E	0.01	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dpy-30"	-	no_errors
AKAP6	9472	hgsc.bcm.edu	36	14	32217296	32217296	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	32217296	32217296	C	T	SNP	AKAP6	NM_004274	human	genbank	54_36p	1	reviewed	missense	c.2759	p.A920V	1	NULL	"HMMSmart_SM00150,superfamily_Spectrin repeat,PatternScan_PFKB_KINASES_2"	-	no_errors
ANG	283	hgsc.bcm.edu	36	14	20231685	20231685	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	20231685	20231685	A	T	SNP	ANG	NM_001097577	human	genbank	54_36p	1	reviewed	missense	c.122	p.K41I	0.53	"superfamily_RNase A-like,HMMSmart_SM00092,HMMPfam_RnaseA"	"superfamily_RNase A-like,HMMSmart_SM00092,HMMPfam_RnaseA,PatternScan_RNASE_PANCREATIC"	-	no_errors
ANGEL1	23357	hgsc.bcm.edu	36	14	76342754	76342754	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	76342754	76342754	G	A	SNP	ANGEL1	NM_015305	human	genbank	54_36p	-1	validated	nonsense	c.1138	p.Q380*	0	"HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos"	"HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos"	-	no_errors
APEX1	328	hgsc.bcm.edu	36	14	19995274	19995274	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	19995274	19995274	G	T	SNP	APEX1	NM_001641	human	genbank	54_36p	1	reviewed	nonsense	c.724	p.E242*	1	"superfamily_DNase I-like,HMMPfam_Exo_endo_phos"	"superfamily_DNase I-like,HMMPfam_Exo_endo_phos,PatternScan_AP_NUCLEASE_F1_1,PatternScan_AP_NUCLEASE_F1_2,PatternScan_AP_NUCLEASE_F1_3"	-	no_errors
ATL1	51062	hgsc.bcm.edu	36	14	50157077	50157078	+	Frame_Shift_Del	DEL	TG	TG	-	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	50157077	50157078	TG	-	DEL	ATL1	NM_015915	human	genbank	54_36p	1	reviewed	frame_shift_del	c.873_874	p.D291fs	0.980:1.000	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	"(deletion:cds_exon[50157067,50157194])"	no_errors
BAZ1A	11177	hgsc.bcm.edu	36	14	34333744	34333744	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	34333744	34333744	A	G	SNP	BAZ1A	NM_013448	human	genbank	54_36p	-1	validated	missense	c.1325	p.F442S	1	"HMMPfam_DDT,HMMSmart_SM00571"	"HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
BDKRB1	623	hgsc.bcm.edu	36	14	95800448	95800448	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	95800448	95800448	C	A	SNP	BDKRB1	NM_000710	human	genbank	54_36p	1	reviewed	missense	c.676	p.L226M	0.11	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
BRF1	2972	hgsc.bcm.edu	36	14	104755073	104755073	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	104755073	104755073	A	G	SNP	BRF1	NM_001519	human	genbank	54_36p	-1	reviewed	missense	c.1625	p.V542A	1	HMMPfam_BRF1	"HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB,HMMPfam_BRF1"	-	no_errors
C14orf106	55320	hgsc.bcm.edu	36	14	44785769	44785769	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	44785769	44785769	T	-	DEL	C14orf106	NM_018353	human	genbank	54_36p	-1	validated	frame_shift_del	c.471	p.K157fs	0.01	NULL	"HMMPfam_SANTA,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	"(deletion:cds_exon[44785696,44786239])"	no_errors
VRTN	55237	hgsc.bcm.edu	36	14	73894215	73894216	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	73894215	73894216	-	G	INS	C14orf115	NM_018228	human	genbank	54_36p	1	validated	frame_shift_ins	c.976_977	p.V329fs	0.998:0.997	NULL	HMMPfam_Transposase_8	-	no_errors
C14orf118	55668	hgsc.bcm.edu	36	14	75708025	75708025	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	75708025	75708025	G	C	SNP	C14orf118	NM_017926	human	genbank	54_36p	1	validated	missense	c.814	p.D272H	1	NULL	NULL	-	no_errors
C14orf148	122945	hgsc.bcm.edu	36	14	76950212	76950212	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	76950212	76950212	T	A	SNP	C14orf148	NM_138791	human	genbank	54_36p	-1	predicted	missense	c.167	p.N56I	0	NULL	"superfamily_NAD(P)-bd,HMMPfam_F420_oxidored"	-	no_errors
C14orf159	80017	hgsc.bcm.edu	36	14	90709423	90709423	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	90709423	90709423	G	T	SNP	C14orf159	NM_001102368	human	genbank	54_36p	1	validated	missense	c.494	p.C165F	1	HMMPfam_DUF1445	HMMPfam_DUF1445	-	no_errors
C14orf28	122525	hgsc.bcm.edu	36	14	44443399	44443399	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	44443399	44443399	C	A	SNP	C14orf28	NM_001017923	human	genbank	54_36p	1	validated	silent	c.666	p.P222	1	NULL	NULL	-	no_errors
C14orf4	64207	hgsc.bcm.edu	36	14	76563302	76563302	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	76563302	76563302	G	A	SNP	C14orf4	NM_024496	human	genbank	54_36p	-1	validated	missense	c.587	p.P196L	1	NULL	NULL	-	no_errors
CDH24	1016	hgsc.bcm.edu	36	14	22588718	22588718	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	22588718	22588718	G	C	SNP	CDH24	NM_022478	human	genbank	54_36p	-1	validated	missense	c.1669	p.P557A	0.82	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH24	1016	hgsc.bcm.edu	36	14	22588879	22588879	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	22588879	22588879	G	T	SNP	CDH24	NM_022478	human	genbank	54_36p	-1	validated	missense	c.1591	p.P531T	0.65	"HMMPfam_Cadherin,superfamily_Cadherin-like"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
CDKL1	8814	hgsc.bcm.edu	36	14	49875490	49875490	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	49875490	49875490	G	A	SNP	CDKL1	NM_004196	human	genbank	54_36p	-1	reviewed	silent	c.666	p.L222	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CHD8	57680	hgsc.bcm.edu	36	14	20940066	20940066	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	20940066	20940066	C	A	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	nonsense	c.3115	p.E1039*	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
CHD8	57680	hgsc.bcm.edu	36	14	20944889	20944889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	20944889	20944889	C	T	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.2036	p.C679Y	1	"HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CHMP4A	29082	hgsc.bcm.edu	36	14	23748961	23748961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	23748961	23748961	C	T	SNP	CHMP4A	NM_014169	human	genbank	54_36p	-1	validated	missense	c.760	p.E254K	0.94	NULL	HMMPfam_Snf7	-	no_errors
CHMP4A	29082	hgsc.bcm.edu	36	14	23750470	23750470	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	23750470	23750470	T	G	SNP	CHMP4A	NM_014169	human	genbank	54_36p	-1	validated	missense	c.479	p.Y160S	1	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors
DAAM1	23002	hgsc.bcm.edu	36	14	58867691	58867693	+	In_Frame_Del	DEL	TGC	TGC	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	TGC	TGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	58867691	58867693	TGC	-	DEL	DAAM1	NM_014992	human	genbank	54_36p	1	reviewed	in_frame_del	c.1572_1574	p.A525in_frame_del	0.999:1.000:0.995	NULL	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	"(deletion:cds_exon[58867680,58867979])"	no_errors
DAD1	1603	hgsc.bcm.edu	36	14	22113848	22113850	+	In_Frame_Del	DEL	CAA	CAA	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	CAA	CAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	22113848	22113850	CAA	-	DEL	DAD1	NM_001344	human	genbank	54_36p	-1	reviewed	in_frame_del	c.337_335	p.V112in_frame_del	1.000:0.996:1.000	HMMPfam_DAD	HMMPfam_DAD	"(deletion:cds_exon[22113843,22113973])"	no_errors
DDHD1	80821	hgsc.bcm.edu	36	14	52594974	52594975	+	Frame_Shift_Del	DEL	GT	GT	-	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	52594974	52594975	GT	-	DEL	DDHD1	NM_030637	human	genbank	54_36p	-1	provisional	frame_shift_del	c.1963_1962	p.L654fs	1.000:1.000	HMMPfam_DDHD	HMMPfam_DDHD	"(deletion:cds_exon[52594945,52595094])"	no_errors
DPF3	8110	hgsc.bcm.edu	36	14	72289787	72289787	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	72289787	72289787	C	T	SNP	DPF3	NM_012074	human	genbank	54_36p	-1	provisional	missense	c.239	p.R80H	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
EML1	2009	hgsc.bcm.edu	36	14	99411069	99411069	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	99411069	99411069	G	A	SNP	EML1	NM_001008707	human	genbank	54_36p	1	reviewed	silent	c.432	p.S144	0	NULL	"HMMPfam_HELP,HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_EF_HAND_1,PatternScan_HIS_ACID_PHOSPHAT_2"	-	no_errors
EML5	161436	hgsc.bcm.edu	36	14	88221225	88221225	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	88221225	88221225	C	A	SNP	EML5	NM_183387	human	genbank	54_36p	-1	validated	missense	c.2869	p.D957Y	1	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1"	-	no_errors
ENTPD5	957	hgsc.bcm.edu	36	14	73519524	73519524	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	73519524	73519524	C	G	SNP	ENTPD5	NM_001249	human	genbank	54_36p	-1	reviewed	missense	c.391	p.A131P	1	HMMPfam_GDA1_CD39	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
EXD2	55218	hgsc.bcm.edu	36	14	68765378	68765378	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	68765378	68765378	C	G	SNP	EXD2	NM_018199	human	genbank	54_36p	1	provisional	missense	c.51	p.I17M	0.03	superfamily_RNaseH_fold	"superfamily_RNaseH_fold,HMMPfam_3_5_exonuc"	-	no_errors
EXD2	55218	hgsc.bcm.edu	36	14	68771270	68771270	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	68771270	68771270	A	C	SNP	EXD2	NM_018199	human	genbank	54_36p	1	provisional	missense	c.443	p.D148A	0	NULL	"HMMPfam_3_5_exonuc,superfamily_RNaseH_fold"	-	no_errors
FANCM	57697	hgsc.bcm.edu	36	14	44714795	44714795	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	44714795	44714795	C	T	SNP	FANCM	NM_020937	human	genbank	54_36p	1	reviewed	nonsense	c.3088	p.R1030*	0.12	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Restriction endonuclease-like,HMMPfam_ERCC4,superfamily_RuvA domain 2-like"	-	no_errors
FBLN5	10516	hgsc.bcm.edu	36	14	91413697	91413697	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	91413697	91413697	C	G	SNP	FBLN5	NM_006329	human	genbank	54_36p	-1	reviewed	missense	c.1072	p.G358R	1	NULL	"superfamily_EGF/Laminin,HMMPfam_EGF_CA,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
FBLN5	10516	hgsc.bcm.edu	36	14	91473124	91473124	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	91473124	91473124	G	C	SNP	FBLN5	NM_006329	human	genbank	54_36p	-1	reviewed	nonsense	c.299	p.S100*	0.89	NULL	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,superfamily_Serine proterase inhibitors,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
FCF1	51077	hgsc.bcm.edu	36	14	74270578	74270578	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	74270578	74270578	G	T	SNP	FCF1	NM_015962	human	genbank	54_36p	1	validated	missense	c.500	p.R167I	1	"superfamily_PIN domain-like,HMMPfam_Fcf1"	"superfamily_PIN domain-like,HMMSmart_SM00670,HMMPfam_Fcf1"	-	no_errors
FITM1	161247	hgsc.bcm.edu	36	14	23670707	23670707	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	23670707	23670707	C	-	DEL	FIT1	NM_203402	human	genbank	54_36p	1	validated	frame_shift_del	c.95	p.S33fs	1	NULL	HMMPfam_Scs3p	"(deletion:cds_exon[23670613,23670878])"	no_errors
FLJ10357	55701	hgsc.bcm.edu	36	14	20614818	20614818	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	20614818	20614818	C	G	SNP	FLJ10357	NM_018071	human	genbank	54_36p	1	validated	missense	c.1963	p.P655A	1	NULL	"superfamily_DBL homology domain (DH-domain),superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
FLRT2	23768	hgsc.bcm.edu	36	14	85158949	85158949	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	85158949	85158949	C	T	SNP	FLRT2	NM_013231	human	genbank	54_36p	1	reviewed	silent	c.1338	p.T446	0.7	"HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
FLVCR2	55640	hgsc.bcm.edu	36	14	75177289	75177289	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	75177289	75177289	C	A	SNP	FLVCR2	NM_017791	human	genbank	54_36p	1	validated	silent	c.1353	p.I451	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
FOXG1	2290	hgsc.bcm.edu	36	14	28307616	28307616	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	28307616	28307616	G	C	SNP	FOXG1	NM_005249	human	genbank	54_36p	1	reviewed	missense	c.1380	p.L460F	1	NULL	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
RALGAPA1	253959	hgsc.bcm.edu	36	14	35144664	35144664	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	35144664	35144664	C	A	SNP	GARNL1	NM_194301	human	genbank	54_36p	-1	provisional	missense	c.5414	p.R1805L	1	superfamily_SSF111347	"superfamily_SSF111347,HMMPfam_Rap_GAP"	-	no_errors
RALGAPA1	253959	hgsc.bcm.edu	36	14	35174434	35174434	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	35174434	35174434	T	C	SNP	GARNL1	NM_194301	human	genbank	54_36p	-1	provisional	missense	c.4280	p.N1427S	1	NULL	"HMMPfam_Rap_GAP,superfamily_SSF111347"	-	no_errors
HAUS4	54930	hgsc.bcm.edu	36	14	22486947	22486947	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	22486947	22486947	C	A	SNP	C14orf94	NM_017815	human	genbank	54_36p	-1	predicted	silent	c.678	p.L226	0.99	NULL	NULL	-	no_errors
HECTD1	25831	hgsc.bcm.edu	36	14	30648466	30648466	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	30648466	30648466	A	T	SNP	HECTD1	NM_015382	human	genbank	54_36p	-1	validated	missense	c.6368	p.F2123Y	1	NULL	"superfamily_ARM repeat,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC,HMMPfam_MIB_HERC2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
KCNH5	27133	hgsc.bcm.edu	36	14	62244288	62244288	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	62244288	62244288	C	T	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	silent	c.2658	p.E886	0.99	NULL	"superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
KCNH5	27133	hgsc.bcm.edu	36	14	62523610	62523610	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	62523610	62523610	C	A	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	missense	c.482	p.S161I	1	NULL	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
KCNK10	54207	hgsc.bcm.edu	36	14	87763626	87763626	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	87763626	87763626	C	G	SNP	KCNK10	NM_138317	human	genbank	54_36p	-1	reviewed	missense	c.527	p.G176A	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	-	no_errors
KIAA0317	9870	hgsc.bcm.edu	36	14	74201301	74201301	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	74201301	74201301	G	C	SNP	KIAA0317	NM_001039479	human	genbank	54_36p	-1	validated	missense	c.2184	p.F728L	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"superfamily_E set domains,HMMPfam_Filamin,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
KHNYN	23351	hgsc.bcm.edu	36	14	23971894	23971894	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	23971894	23971894	C	T	SNP	KIAA0323	NM_015299	human	genbank	54_36p	1	validated	silent	c.1476	p.V492	1	NULL	NULL	-	no_errors
KHNYN	23351	hgsc.bcm.edu	36	14	23976081	23976081	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	23976081	23976081	G	T	SNP	KIAA0323	NM_015299	human	genbank	54_36p	1	validated	splice_site	c.1788-1	e7-1	0.95	-	-	-	no_errors
NYNRIN	57523	hgsc.bcm.edu	36	14	23949056	23949056	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	23949056	23949056	T	G	SNP	KIAA1305	NM_025081	human	genbank	54_36p	1	validated	missense	c.2216	p.F739C	0	NULL	"superfamily_DNA/RNA polymerases,superfamily_Ribonuclease H-like"	-	no_errors
KIAA1409	57578	hgsc.bcm.edu	36	14	93129916	93129916	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	93129916	93129916	G	A	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	nonsense	c.2639	p.W880*	1	NULL	NULL	-	no_errors
KIAA1409	57578	hgsc.bcm.edu	36	14	93133499	93133499	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	93133499	93133499	T	C	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	missense	c.2701	p.S901P	1	NULL	NULL	-	no_errors
KIAA1409	57578	hgsc.bcm.edu	36	14	93190053	93190053	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	93190053	93190053	C	T	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	missense	c.5797	p.R1933W	1	NULL	NULL	-	no_errors
KTN1	3895	hgsc.bcm.edu	36	14	55173781	55173781	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	55173781	55173781	G	A	SNP	KTN1	NM_001079521	human	genbank	54_36p	1	validated	missense	c.1662	p.M554I	1	NULL	superfamily_Spectrin repeat	-	no_errors
KTN1	3895	hgsc.bcm.edu	36	14	55189516	55189516	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	55189516	55189516	A	G	SNP	KTN1	NM_001079521	human	genbank	54_36p	1	validated	missense	c.2723	p.K908R	0.89	NULL	superfamily_Spectrin repeat	-	no_errors
LRP10	26020	hgsc.bcm.edu	36	14	22414216	22414216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	22414216	22414216	G	A	SNP	LRP10	NM_014045	human	genbank	54_36p	1	validated	missense	c.328	p.G110S	1	"superfamily_Spermadhesin CUB domain,HMMSmart_SM00042"	"superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_CUB,PatternScan_LDLRA_1"	-	no_errors
LRP10	26020	hgsc.bcm.edu	36	14	22414700	22414700	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	22414700	22414700	C	G	SNP	LRP10	NM_014045	human	genbank	54_36p	1	validated	missense	c.703	p.R235G	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module"	-	no_errors
MARK3	4140	hgsc.bcm.edu	36	14	102988019	102988019	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	102988019	102988019	G	A	SNP	MARK3	NM_002376	human	genbank	54_36p	1	validated	missense	c.358	p.E120K	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_SM00165,superfamily_Kinase associated domain 1 KA1,HMMPfam_KA1"	-	no_errors
MDGA2	161357	hgsc.bcm.edu	36	14	46600366	46600366	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	46600366	46600366	C	T	SNP	MDGA2	NM_182830	human	genbank	54_36p	-1	validated	missense	c.467	p.R156Q	1	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_MAM,HMMPfam_MAM"	-	no_errors
METT11D1	64745	hgsc.bcm.edu	36	14	20528562	20528562	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	20528562	20528562	C	A	SNP	METT11D1	NM_001029991	human	genbank	54_36p	1	validated	missense	c.329	p.A110D	0.83	NULL	"HMMPfam_Rsm22,superfamily_SSF53335"	-	no_errors
MNAT1	4331	hgsc.bcm.edu	36	14	60355243	60355243	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	60355243	60355243	A	G	SNP	MNAT1	NM_002431	human	genbank	54_36p	1	validated	silent	c.612	p.R204	1	HMMPfam_MAT1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_MAT1"	-	no_errors
MTHFD1	4522	hgsc.bcm.edu	36	14	63956328	63956328	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	63956328	63956328	A	G	SNP	MTHFD1	NM_005956	human	genbank	54_36p	1	reviewed	missense	c.659	p.E220G	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_THF_DHG_CYH_C"	###############################################################################################################################################################################################################################################################	-	no_errors
NOVA1	4857	hgsc.bcm.edu	36	14	25987867	25987867	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	25987867	25987867	A	G	SNP	NOVA1	NM_002515	human	genbank	54_36p	-1	reviewed	missense	c.662	p.V221A	1	"superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1"	-	no_errors
NPAS3	64067	hgsc.bcm.edu	36	14	32754188	32754188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	32754188	32754188	C	T	SNP	NPAS3	NM_173159	human	genbank	54_36p	1	validated	missense	c.100	p.R34W	1	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC"	-	no_errors
NRXN3	9369	hgsc.bcm.edu	36	14	78502450	78502450	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	78502450	78502450	C	A	SNP	NRXN3	NM_004796	human	genbank	54_36p	1	reviewed	missense	c.1606	p.L536I	1	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	"PatternScan_ASX_HYDROXYL,HMMSmart_LamG,HMMSmart_4.1m,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
OR11G2	390439	hgsc.bcm.edu	36	14	19736015	19736016	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	19736015	19736016	-	A	INS	OR11G2	NM_001005503	human	genbank	54_36p	1	provisional	frame_shift_ins	c.681_682	p.G229fs	0.127:0.000	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR4E2	26686	hgsc.bcm.edu	36	14	21203148	21203148	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	21203148	21203148	A	C	SNP	OR4E2	NM_001001912	human	genbank	54_36p	1	validated	silent	c.12	p.L4	0.22	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PACS2	23241	hgsc.bcm.edu	36	14	104928592	104928592	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	104928592	104928592	G	A	SNP	PACS2	NM_001100913	human	genbank	54_36p	1	validated	missense	c.2047	p.V683M	1	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors
PCK2	5106	hgsc.bcm.edu	36	14	23642652	23642652	+	Missense_Mutation	SNP	G	G	A	rs35618680	byCluster;byFrequency	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	23642652	23642652	G	A	SNP	PCK2	NM_004563	human	genbank	54_36p	1	reviewed	missense	c.1562	p.R521H	0.98	"HMMPfam_PEPCK,superfamily_PEP carboxykinase-like"	"superfamily_PEP carboxykinase N-terminal domain,HMMPfam_PEPCK,superfamily_PEP carboxykinase-like,PatternScan_PEPCK_GTP"	-	no_errors
PGF	5228	hgsc.bcm.edu	36	14	74479185	74479185	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	74479185	74479185	C	T	SNP	PGF	NM_002632	human	genbank	54_36p	-1	validated	missense	c.490	p.G164S	0.43	NULL	"superfamily_Cystine-knot cytokines,HMMSmart_SM00141,HMMPfam_PDGF,PatternScan_PDGF_1"	-	no_errors
PRKCH	5583	hgsc.bcm.edu	36	14	60994040	60994040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	60994040	60994040	G	A	SNP	PRKCH	NM_006255	human	genbank	54_36p	1	reviewed	missense	c.1168	p.V390M	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
PRKD1	5587	hgsc.bcm.edu	36	14	29177749	29177749	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	29177749	29177749	G	A	SNP	PRKD1	NM_002742	human	genbank	54_36p	-1	validated	missense	c.809	p.P270L	1	superfamily_SSF57889	"superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PRMT5	10419	hgsc.bcm.edu	36	14	22463692	22463692	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	22463692	22463692	G	C	SNP	PRMT5	NM_006109	human	genbank	54_36p	-1	validated	missense	c.1006	p.Q336E	1	"HMMPfam_PRMT5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_PRMT5,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
PSME1	5720	hgsc.bcm.edu	36	14	23676234	23676234	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	23676234	23676234	G	-	DEL	PSME1	NM_176783	human	genbank	54_36p	1	reviewed	frame_shift_del	c.115	p.E39fs	0.99	"superfamily_Prot_act_regA,HMMPfam_PA28_alpha"	"superfamily_Prot_act_regA,HMMPfam_PA28_alpha,HMMPfam_PA28_beta"	"(deletion:cds_exon[23676192,23676254])"	no_errors
PTPN21	11099	hgsc.bcm.edu	36	14	88005598	88005598	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	88005598	88005598	A	G	SNP	PTPN21	NM_007039	human	genbank	54_36p	-1	reviewed	missense	c.3233	p.L1078S	0.99	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404"	###############################################################################################################################################################################################################################################################	-	no_errors
RAB2B	84932	hgsc.bcm.edu	36	14	21001674	21001674	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	21001674	21001674	G	C	SNP	RAB2B	NM_032846	human	genbank	54_36p	-1	provisional	missense	c.455	p.T152R	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
RBM25	58517	hgsc.bcm.edu	36	14	72645841	72645841	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	72645841	72645841	A	G	SNP	RBM25	NM_021239	human	genbank	54_36p	1	validated	missense	c.1580	p.K527R	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI"	-	no_errors
RDH12	145226	hgsc.bcm.edu	36	14	67270307	67270307	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	67270307	67270307	C	T	SNP	RDH12	NM_152443	human	genbank	54_36p	1	reviewed	missense	c.940	p.R314W	1	NULL	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	-	no_errors
RIPK3	11035	hgsc.bcm.edu	36	14	23876508	23876508	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	23876508	23876508	T	A	SNP	RIPK3	NM_006871	human	genbank	54_36p	-1	reviewed	splice_site	c.901-2	e8-2	0.85	-	-	-	no_errors
RIPK3	11035	hgsc.bcm.edu	36	14	23877326	23877326	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	23877326	23877326	C	T	SNP	RIPK3	NM_006871	human	genbank	54_36p	-1	reviewed	missense	c.633	p.M211I	0.95	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
RNASE11	122651	hgsc.bcm.edu	36	14	20121908	20121908	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	20121908	20121908	A	C	SNP	RNASE11	NM_145250	human	genbank	54_36p	-1	validated	missense	c.566	p.L189R	1	superfamily_RNase A-like	superfamily_RNase A-like	-	no_errors
RNASE11	122651	hgsc.bcm.edu	36	14	20122180	20122180	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	20122180	20122180	G	A	SNP	RNASE11	NM_145250	human	genbank	54_36p	-1	validated	silent	c.294	p.C98	0	superfamily_RNase A-like	superfamily_RNase A-like	-	no_errors
SALL2	6297	hgsc.bcm.edu	36	14	21060819	21060819	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	21060819	21060819	C	T	SNP	SALL2	NM_005407	human	genbank	54_36p	-1	validated	silent	c.2883	p.L961	0.94	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SEC23A	10484	hgsc.bcm.edu	36	14	38584206	38584206	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	38584206	38584206	C	T	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	missense	c.1811	p.R604H	1	"superfamily_Sec23_helical,HMMPfam_Sec23_helical"	"superfamily_SSF81995,superfamily_Znf_Sec23_Sec24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_SSF53300,HMMPfam_Sec23_BS,superfamily_Sec23_helical,HMMPfam_Sec23_helical,superfamily_SSF82754,HMMPfam_Gelsolin"	-	no_errors
SERPINA12	145264	hgsc.bcm.edu	36	14	94034154	94034154	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	94034154	94034154	G	T	SNP	SERPINA12	NM_173850	human	genbank	54_36p	-1	provisional	missense	c.334	p.L112I	0.01	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"PatternScan_SERPIN,superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	-	no_errors
SERPINA4	5267	hgsc.bcm.edu	36	14	94100013	94100013	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	94100013	94100013	C	A	SNP	SERPINA4	NM_006215	human	genbank	54_36p	1	provisional	missense	c.441	p.H147Q	0	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
SERPINA4	5267	hgsc.bcm.edu	36	14	94100151	94100151	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	94100151	94100151	G	C	SNP	SERPINA4	NM_006215	human	genbank	54_36p	1	provisional	missense	c.579	p.K193N	1	"HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin"	"HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin"	-	no_errors
SERPINA6	866	hgsc.bcm.edu	36	14	93850271	93850271	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	93850271	93850271	C	G	SNP	SERPINA6	NM_001756	human	genbank	54_36p	-1	reviewed	missense	c.468	p.L156F	0	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
SIPA1L1	26037	hgsc.bcm.edu	36	14	71125513	71125513	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	71125513	71125513	G	A	SNP	SIPA1L1	NM_015556	human	genbank	54_36p	1	provisional	missense	c.1171	p.D391N	1	NULL	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
SLC24A4	123041	hgsc.bcm.edu	36	14	92018837	92018837	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	92018837	92018837	T	A	SNP	SLC24A4	NM_153646	human	genbank	54_36p	1	validated	missense	c.1265	p.V422D	0.97	NULL	HMMPfam_Na_Ca_ex	-	no_errors
SOCS4	122809	hgsc.bcm.edu	36	14	54580048	54580048	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	54580048	54580048	G	C	SNP	SOCS4	NM_080867	human	genbank	54_36p	1	reviewed	missense	c.536	p.R179T	0	NULL	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00253,HMMPfam_SOCS_box"	-	no_errors
SPTB	6710	hgsc.bcm.edu	36	14	64322388	64322388	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	64322388	64322388	G	C	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.3596	p.S1199C	1	"HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC"	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
SPTB	6710	hgsc.bcm.edu	36	14	64331923	64331925	+	In_Frame_Del	DEL	CAT	CAT	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	CAT	CAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	64331923	64331925	CAT	-	DEL	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	in_frame_del	c.1529_1527	p.W510in_frame_del	1.000:1.000:1.000	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729"	"(deletion:cds_exon[64331808,64332110])"	no_errors
SPTB	6710	hgsc.bcm.edu	36	14	64332020	64332020	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	64332020	64332020	C	G	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.1432	p.V478L	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729"	-	no_errors
STRN3	29966	hgsc.bcm.edu	36	14	30494614	30494614	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	30494614	30494614	C	T	SNP	STRN3	NM_001083893	human	genbank	54_36p	-1	validated	silent	c.423	p.L141	1	HMMPfam_Striatin	"HMMPfam_Striatin,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
SYNE2	23224	hgsc.bcm.edu	36	14	63586233	63586234	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	14	63586233	63586234	-	T	INS	SYNE2	NM_182914	human	genbank	54_36p	1	validated	frame_shift_ins	c.7529_7530	p.L2511fs	0.602:0.610	NULL	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH"	-	no_errors
SYNE2	23224	hgsc.bcm.edu	36	14	63586268	63586268	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	63586268	63586268	C	T	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	missense	c.7564	p.L2522F	0.02	NULL	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
SYNE2	23224	hgsc.bcm.edu	36	14	63666294	63666294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	63666294	63666294	C	T	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	silent	c.14061	p.S4687	0.79	NULL	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
SYNE2	23224	hgsc.bcm.edu	36	14	63754929	63754929	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	63754929	63754929	G	C	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	missense	c.19603	p.G6535R	0.02	NULL	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
TECPR2	9895	hgsc.bcm.edu	36	14	101970556	101970556	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	101970556	101970556	T	-	DEL	TECPR2	NM_014844	human	genbank	54_36p	1	validated	frame_shift_del	c.1649	p.L550fs	0.58	NULL	"PatternScan_WD_REPEATS_1,HMMSmart_WD40,superfamily_WD40_like,HMMSmart_TECPR,HMMPfam_Hyd_WA"	"(deletion:cds_exon[101970325,101971301])"	no_errors
TECPR2	9895	hgsc.bcm.edu	36	14	101970790	101970790	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	101970790	101970790	A	T	SNP	TECPR2	NM_014844	human	genbank	54_36p	1	validated	missense	c.1883	p.E628V	0	NULL	"HMMSmart_WD40,HMMPfam_Hyd_WA,HMMSmart_TECPR,superfamily_WD40_like,PatternScan_WD_REPEATS_1"	-	no_errors
TEP1	7011	hgsc.bcm.edu	36	14	19921295	19921295	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	19921295	19921295	G	A	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	nonsense	c.3925	p.Q1309*	0.17	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT"	"HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
TOX4	9878	hgsc.bcm.edu	36	14	21031164	21031164	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	14	21031164	21031164	G	C	SNP	TOX4	NM_014828	human	genbank	54_36p	1	validated	missense	c.1549	p.E517Q	0.99	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
TSHR	7253	hgsc.bcm.edu	36	14	80679100	80679100	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	80679100	80679100	G	C	SNP	TSHR	NM_000369	human	genbank	54_36p	1	reviewed	silent	c.945	p.V315	0.04	NULL	"superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TSHR	7253	hgsc.bcm.edu	36	14	80679162	80679162	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	80679162	80679162	G	A	SNP	TSHR	NM_000369	human	genbank	54_36p	1	reviewed	missense	c.1007	p.G336E	0.3	NULL	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
TSHR	7253	hgsc.bcm.edu	36	14	80679299	80679299	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	80679299	80679299	G	C	SNP	TSHR	NM_000369	human	genbank	54_36p	1	reviewed	missense	c.1144	p.D382H	1	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
TSHR	7253	hgsc.bcm.edu	36	14	80679338	80679338	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	80679338	80679338	G	A	SNP	TSHR	NM_000369	human	genbank	54_36p	1	reviewed	missense	c.1183	p.D395N	1	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
TSHR	7253	hgsc.bcm.edu	36	14	80679406	80679406	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	14	80679406	80679406	G	C	SNP	TSHR	NM_000369	human	genbank	54_36p	1	reviewed	silent	c.1251	p.L417	1	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
ZFP36L1	677	hgsc.bcm.edu	36	14	68329376	68329376	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	14	68329376	68329376	G	A	SNP	ZFP36L1	NM_004926	human	genbank	54_36p	-1	reviewed	silent	c.33	p.F11	1	HMMPfam_Tis11B_N	"HMMPfam_Tis11B_N,superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH"	-	no_errors
ZFYVE1	53349	hgsc.bcm.edu	36	14	72512089	72512089	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	14	72512089	72512089	C	A	SNP	ZFYVE1	NM_021260	human	genbank	54_36p	-1	reviewed	nonsense	c.1729	p.G577*	0.68	superfamily_FYVE/PHD zinc finger	"superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE"	-	no_errors
ZFYVE26	23503	hgsc.bcm.edu	36	14	67302709	67302709	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	67302709	67302709	G	-	DEL	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.5999	p.A2000fs	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	"(deletion:cds_exon[67302697,67302917])"	no_errors
ZFYVE26	23503	hgsc.bcm.edu	36	14	67314115	67314115	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	14	67314115	67314115	A	C	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.4888	p.L1630V	1	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	hgsc.bcm.edu	36	14	67321709	67321709	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	14	67321709	67321709	C	A	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.3343	p.A1115S	0.75	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ACTC1	70	hgsc.bcm.edu	36	15	32871670	32871670	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	32871670	32871670	T	C	SNP	ACTC1	NM_005159	human	genbank	54_36p	-1	reviewed	missense	c.721	p.S241G	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82442585	82442585	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	82442585	82442585	A	T	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	silent	c.3201	p.A1067	0.04	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC"	-	no_errors
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82442881	82442881	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	82442881	82442881	A	T	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	missense	c.3497	p.N1166I	0	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
ANXA2	302	hgsc.bcm.edu	36	15	58461889	58461890	+	Frame_Shift_Ins	INS	-	-	TATA	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	58461889	58461890	-	TATA	INS	ANXA2	NM_001002858	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.146_145	p.T49fs	0.969:0.970	superfamily_Annexin	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
AP3B2	8120	hgsc.bcm.edu	36	15	81130227	81130227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	81130227	81130227	C	A	SNP	AP3B2	ENST00000261722	human	ensembl	54_36p	-1	known	missense	c.2148	p.E716D	0.98	NULL	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain"	-	no_errors
ATP10A	57194	hgsc.bcm.edu	36	15	23476013	23476014	+	Frame_Shift_Ins	INS	-	-	AA	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	15	23476013	23476014	-	AA	INS	ATP10A	NM_024490	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.4068_4067	p.T1357fs	0.000:0.000	NULL	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3"	-	no_errors
ATP8B4	79895	hgsc.bcm.edu	36	15	48010714	48010714	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	48010714	48010714	G	A	SNP	ATP8B4	NM_024837	human	genbank	54_36p	-1	validated	silent	c.1536	p.S512	1	"superfamily_SSF81665,superfamily_SSF56784,superfamily_SSF81660"	"superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3"	-	no_errors
BNC1	646	hgsc.bcm.edu	36	15	81723828	81723828	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	81723828	81723828	G	T	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.1179	p.N393K	1	HMMSmart_ZnF_C2H2	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
BNC1	646	hgsc.bcm.edu	36	15	81723836	81723836	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	81723836	81723836	C	T	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.1171	p.G391R	1	HMMSmart_ZnF_C2H2	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
C15orf42	90381	hgsc.bcm.edu	36	15	87946163	87946163	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	87946163	87946163	A	C	SNP	C15orf42	NM_152259	human	genbank	54_36p	1	validated	missense	c.2519	p.E840A	0.78	NULL	NULL	-	no_errors
CHD2	1106	hgsc.bcm.edu	36	15	91300692	91300692	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	91300692	91300692	G	C	SNP	CHD2	NM_001271	human	genbank	54_36p	1	reviewed	splice_site	c.1810-1	e15-1	1	-	-	-	no_errors
CHRM5	1133	hgsc.bcm.edu	36	15	32142634	32142634	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	32142634	32142634	C	T	SNP	CHRM5	NM_012125	human	genbank	54_36p	1	validated	missense	c.424	p.R142C	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CHRNA7	1139	hgsc.bcm.edu	36	15	30237996	30237996	+	Silent	SNP	G	G	A	rs1042722	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	30237996	30237996	G	A	SNP	CHRNA7	NM_000746	human	genbank	54_36p	1	reviewed	silent	c.690	p.T230	0.18	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,superfamily_Neu_channel_TM"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
CLN6	54982	hgsc.bcm.edu	36	15	66293728	66293728	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	66293728	66293728	T	-	DEL	CLN6	NM_017882	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.251	p.Y84fs	1	NULL	NULL	"(deletion:cds_exon[66293682,66293780])"	no_errors
CORO2B	10391	hgsc.bcm.edu	36	15	66798548	66798548	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	66798548	66798548	C	A	SNP	CORO2B	NM_006091	human	genbank	54_36p	1	validated	nonsense	c.1092	p.Y364*	1	HMMPfam_DUF1900	"HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900"	-	no_errors
CRTC3	64784	hgsc.bcm.edu	36	15	88948681	88948681	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	88948681	88948681	C	G	SNP	CRTC3	NM_022769	human	genbank	54_36p	1	validated	missense	c.474	p.N158K	1	NULL	NULL	-	no_errors
CYFIP1	23191	hgsc.bcm.edu	36	15	20479891	20479891	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	20479891	20479891	G	C	SNP	CYFIP1	NM_014608	human	genbank	54_36p	1	validated	missense	c.327	p.E109D	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
CYFIP1	23191	hgsc.bcm.edu	36	15	20515284	20515284	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	20515284	20515284	G	A	SNP	CYFIP1	NM_014608	human	genbank	54_36p	1	validated	missense	c.2357	p.R786Q	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
CYP1A2	1544	hgsc.bcm.edu	36	15	72829288	72829288	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	72829288	72829288	G	A	SNP	CYP1A2	NM_000761	human	genbank	54_36p	1	reviewed	silent	c.156	p.G52	0.89	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP1A2	1544	hgsc.bcm.edu	36	15	72829453	72829453	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	72829453	72829453	C	A	SNP	CYP1A2	NM_000761	human	genbank	54_36p	1	reviewed	silent	c.321	p.G107	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
DENND4A	10260	hgsc.bcm.edu	36	15	63797187	63797187	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	63797187	63797187	G	C	SNP	DENND4A	NM_005848	human	genbank	54_36p	-1	validated	missense	c.1790	p.S597C	1	"HMMPfam_dDENN,HMMSmart_dDENN"	"HMMSmart_uDENN,HMMPfam_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_PPR"	-	no_errors
DMXL2	23312	hgsc.bcm.edu	36	15	49579143	49579143	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	49579143	49579143	A	T	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.3570	p.N1190K	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
DUOX1	53905	hgsc.bcm.edu	36	15	43213718	43213718	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	43213718	43213718	C	G	SNP	DUOX1	NM_017434	human	genbank	54_36p	1	reviewed	missense	c.226	p.R76G	1	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	###############################################################################################################################################################################################################################################################	-	no_errors
DUOX1	53905	hgsc.bcm.edu	36	15	43221589	43221589	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	43221589	43221589	T	C	SNP	DUOX1	NM_017434	human	genbank	54_36p	1	reviewed	silent	c.1809	p.C603	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DUOX1	53905	hgsc.bcm.edu	36	15	43223678	43223678	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	43223678	43223678	C	G	SNP	DUOX1	NM_017434	human	genbank	54_36p	1	reviewed	missense	c.2089	p.R697G	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DUOX2	50506	hgsc.bcm.edu	36	15	43185225	43185225	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	43185225	43185225	C	T	SNP	DUOX2	NM_014080	human	genbank	54_36p	-1	reviewed	missense	c.2242	p.E748K	0.52	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DUOX2	50506	hgsc.bcm.edu	36	15	43186126	43186126	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	43186126	43186126	G	A	SNP	DUOX2	NM_014080	human	genbank	54_36p	-1	reviewed	silent	c.1837	p.L613	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DYX1C1	161582	hgsc.bcm.edu	36	15	53510211	53510211	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	53510211	53510211	A	T	SNP	DYX1C1	NM_001033559	human	genbank	54_36p	-1	validated	nonsense	c.1106	p.L369*	0.99	NULL	"superfamily_HSP20_chap,HMMPfam_CS,superfamily_SSF48452,HMMPfam_TPR_1"	-	no_errors
DYX1C1	161582	hgsc.bcm.edu	36	15	53512085	53512085	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	53512085	53512085	T	A	SNP	DYX1C1	NM_130810	human	genbank	54_36p	-1	validated	missense	c.1055	p.E352V	1	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like"	"HMMPfam_TPR_1,superfamily_HSP20-like chaperones,HMMPfam_CS,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
DYX1C1	161582	hgsc.bcm.edu	36	15	53546534	53546534	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	53546534	53546534	T	-	DEL	DYX1C1	NM_130810	human	genbank	54_36p	-1	validated	frame_shift_del	c.523	p.I175fs	0.03	NULL	"HMMPfam_TPR_1,superfamily_HSP20-like chaperones,HMMPfam_CS,HMMSmart_SM00028,superfamily_TPR-like"	"(deletion:cds_exon[53546420,53546651])"	no_errors
EXD1	161829	hgsc.bcm.edu	36	15	39263912	39263912	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	39263912	39263912	T	G	SNP	EXD1	NM_152596	human	genbank	54_36p	-1	provisional	missense	c.1054	p.K352Q	0	NULL	"superfamily_Ribonuclease H-like,HMMSmart_SM00474,HMMPfam_3_5_exonuc"	-	no_errors
FMN1	342184	hgsc.bcm.edu	36	15	30878421	30878421	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	30878421	30878421	C	T	SNP	FMN1	NM_001103184	human	genbank	54_36p	-1	provisional	missense	c.3337	p.G1113R	1	"superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	"superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	-	no_errors
FSIP1	161835	hgsc.bcm.edu	36	15	37697564	37697564	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	37697564	37697564	C	A	SNP	FSIP1	NM_152597	human	genbank	54_36p	-1	validated	nonsense	c.1363	p.E455*	0	NULL	NULL	-	no_errors
FURIN	5045	hgsc.bcm.edu	36	15	89225685	89225685	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	15	89225685	89225685	G	A	SNP	FURIN	NM_002569	human	genbank	54_36p	1	reviewed	missense	c.1958	p.G653E	1	"superfamily_Grow_fac_recept,HMMSmart_FU"	"superfamily_Prot_inh_propept,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein,HMMSmart_FU,superfamily_Grow_fac_recept"	-	no_errors
GCNT3	9245	hgsc.bcm.edu	36	15	57698527	57698527	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	57698527	57698527	A	T	SNP	GCNT3	NM_004751	human	genbank	54_36p	1	reviewed	missense	c.798	p.K266N	1	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
GPR176	11245	hgsc.bcm.edu	36	15	37880665	37880665	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	37880665	37880665	C	A	SNP	GPR176	NM_007223	human	genbank	54_36p	-1	provisional	missense	c.1508	p.R503I	1	NULL	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
HCN4	10021	hgsc.bcm.edu	36	15	71404530	71404530	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	71404530	71404530	C	T	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	silent	c.1797	p.A599	0.97	"superfamily_cNMP_binding,HMMSmart_cNMP"	"PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1"	-	no_errors
HEXA	3073	hgsc.bcm.edu	36	15	70427491	70427491	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	70427491	70427491	T	C	SNP	HEXA	NM_000520	human	genbank	54_36p	-1	reviewed	missense	c.1025	p.K342R	0.45	"HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	"superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	-	no_errors
HMG20A	10363	hgsc.bcm.edu	36	15	75550436	75550436	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	75550436	75550436	C	T	SNP	HMG20A	NM_018200	human	genbank	54_36p	1	provisional	nonsense	c.580	p.Q194*	1	NULL	"superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
IL16	3603	hgsc.bcm.edu	36	15	79359025	79359025	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	79359025	79359025	C	A	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	missense	c.936	p.H312Q	0.36	superfamily_PDZ domain-like	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
IL16	3603	hgsc.bcm.edu	36	15	79372383	79372383	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	79372383	79372383	A	G	SNP	IL16	NM_172217	human	genbank	54_36p	1	reviewed	missense	c.1852	p.R618G	0.12	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
KIF7	374654	hgsc.bcm.edu	36	15	87989647	87989647	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	87989647	87989647	G	A	SNP	KIF7	NM_198525	human	genbank	54_36p	-1	validated	silent	c.423	p.R141	0	NULL	NULL	-	no_errors
LINGO1	84894	hgsc.bcm.edu	36	15	75694900	75694900	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	75694900	75694900	G	A	SNP	LINGO1	NM_032808	human	genbank	54_36p	-1	validated	missense	c.404	p.P135L	1	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
MEIS2	4212	hgsc.bcm.edu	36	15	35175832	35175832	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	35175832	35175832	C	T	SNP	MEIS2	NM_170675	human	genbank	54_36p	-1	reviewed	missense	c.337	p.V113I	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
MGA	23269	hgsc.bcm.edu	36	15	39839925	39839925	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	39839925	39839925	G	A	SNP	MGA	NM_001080541	human	genbank	54_36p	1	provisional	missense	c.7451	p.R2484Q	1	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	"HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,superfamily_HLH helix-loop-helix DNA-binding domain,PatternScan_TBOX_2"	-	no_errors
MGA	23269	hgsc.bcm.edu	36	15	39846076	39846076	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	39846076	39846076	A	C	SNP	MGA	NM_001080541	human	genbank	54_36p	1	provisional	missense	c.8651	p.Q2884P	1	NULL	"HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,superfamily_HLH helix-loop-helix DNA-binding domain,PatternScan_TBOX_2"	-	no_errors
MKRN3	7681	hgsc.bcm.edu	36	15	21362280	21362280	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	21362280	21362280	G	A	SNP	MKRN3	NM_005664	human	genbank	54_36p	1	reviewed	silent	c.258	p.P86	0	NULL	"HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
MPI	4351	hgsc.bcm.edu	36	15	72975547	72975547	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	72975547	72975547	G	A	SNP	MPI	NM_002435	human	genbank	54_36p	1	reviewed	silent	c.672	p.A224	1	"superfamily_RmlC-like cupins,HMMPfam_PMI_typeI"	"superfamily_RmlC-like cupins,HMMPfam_PMI_typeI,PatternScan_PMI_I_1,PatternScan_PMI_I_2"	-	no_errors
MTFMT	123263	hgsc.bcm.edu	36	15	63095844	63095844	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	63095844	63095844	G	T	SNP	MTFMT	NM_139242	human	genbank	54_36p	-1	validated	missense	c.541	p.R181S	0.98	"HMMPfam_Formyl_trans_C,superfamily_FMT C-terminal domain-like"	"HMMPfam_Formyl_trans_N,superfamily_Formyltransferase,HMMPfam_Formyl_trans_C,superfamily_FMT C-terminal domain-like"	-	no_errors
MYO5A	4644	hgsc.bcm.edu	36	15	50393636	50393636	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	50393636	50393636	A	G	SNP	MYO5A	NM_000259	human	genbank	54_36p	-1	reviewed	silent	c.5391	p.S1797	0.61	NULL	"superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL"	-	no_errors
MYO5C	55930	hgsc.bcm.edu	36	15	50340571	50340571	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	50340571	50340571	C	G	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.1093	p.E365Q	0.95	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL"	-	no_errors
MYO9A	4649	hgsc.bcm.edu	36	15	69909696	69909696	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	69909696	69909696	C	T	SNP	MYO9A	NM_006901	human	genbank	54_36p	-1	validated	missense	c.6848	p.R2283H	0.96	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK3	4916	hgsc.bcm.edu	36	15	86224606	86224606	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	86224606	86224606	G	A	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	missense	c.2233	p.R745W	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK3	4916	hgsc.bcm.edu	36	15	86377174	86377174	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	86377174	86377174	C	G	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	silent	c.1503	p.V501	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
OCA2	4948	hgsc.bcm.edu	36	15	25870554	25870554	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	25870554	25870554	G	C	SNP	OCA2	NM_000275	human	genbank	54_36p	-1	reviewed	missense	c.1922	p.S641W	1	HMMPfam_CitMHS	HMMPfam_CitMHS	-	no_errors
OR4F4	26682	hgsc.bcm.edu	36	15	100280710	100280711	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	100280710	100280711	-	A	INS	OR4F4	NM_001004195	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.76_75	p.V25fs	0.000:0.000	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PAQR5	54852	hgsc.bcm.edu	36	15	67464184	67464184	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	67464184	67464184	C	T	SNP	PAQR5	NM_001104554	human	genbank	54_36p	1	validated	silent	c.294	p.S98	1	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors
PLA2G4D	283748	hgsc.bcm.edu	36	15	40164629	40164629	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	40164629	40164629	C	T	SNP	PLA2G4D	NM_178034	human	genbank	54_36p	-1	validated	splice_site	c.429-1	e6-1	0.46	-	-	-	no_errors
PLA2G4E	123745	hgsc.bcm.edu	36	15	40089630	40089630	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	40089630	40089630	A	-	DEL	PLA2G4E	NM_001080490	human	genbank	54_36p	-1	provisional	frame_shift_del	c.108	p.A39fs	0	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	"(deletion:cds_exon[40089569,40089737])"	no_errors
PRC1	9055	hgsc.bcm.edu	36	15	89313802	89313802	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	15	89313802	89313802	C	A	SNP	PRC1	NM_003981	human	genbank	54_36p	-1	reviewed	missense	c.1628	p.G543V	0.03	HMMPfam_MAP65_ASE1	HMMPfam_MAP65_ASE1	-	no_errors
PSTPIP1	9051	hgsc.bcm.edu	36	15	75097609	75097609	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	75097609	75097609	G	C	SNP	PSTPIP1	NM_003978	human	genbank	54_36p	1	reviewed	missense	c.102	p.K34N	1	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_Prismane protein-like"	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_Prismane protein-like,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
PYGO1	26108	hgsc.bcm.edu	36	15	53628417	53628417	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	53628417	53628417	G	A	SNP	PYGO1	NM_015617	human	genbank	54_36p	-1	provisional	missense	c.118	p.R40C	1	NULL	"superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,PatternScan_ZF_PHD_1"	-	no_errors
RAD51	5888	hgsc.bcm.edu	36	15	38788604	38788604	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	38788604	38788604	C	T	SNP	RAD51	NM_002875	human	genbank	54_36p	1	reviewed	nonsense	c.433	p.Q145*	1	"HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	"superfamily_Rad51 N-terminal domain-like,HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
RYR3	6263	hgsc.bcm.edu	36	15	31924372	31924374	+	In_Frame_Del	DEL	AGA	AGA	-	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	AGA	AGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	31924372	31924374	AGA	-	DEL	RYR3	NM_001036	human	genbank	54_36p	1	validated	in_frame_del	c.13314_13316	p.E4441in_frame_del	0.840:0.998:0.998	HMMPfam_RR_TM4-6	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	"(deletion:cds_exon[31924355,31924555])"	no_errors
SCG5	6447	hgsc.bcm.edu	36	15	30776074	30776074	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	30776074	30776074	T	C	SNP	SCG5	NM_003020	human	genbank	54_36p	1	validated	missense	c.608	p.F203S	1	HMMPfam_Secretogranin_V	HMMPfam_Secretogranin_V	-	no_errors
SIN3A	25942	hgsc.bcm.edu	36	15	73469099	73469099	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	73469099	73469099	G	A	SNP	SIN3A	NM_015477	human	genbank	54_36p	-1	reviewed	missense	c.2968	p.H990Y	1	NULL	"superfamily_PAH,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_HDAC_interact"	-	no_errors
SLC12A6	9990	hgsc.bcm.edu	36	15	32320198	32320198	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	32320198	32320198	C	A	SNP	SLC12A6	NM_133647	human	genbank	54_36p	-1	reviewed	missense	c.2392	p.G798W	1	NULL	"HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1"	-	no_errors
SLC12A6	9990	hgsc.bcm.edu	36	15	32330137	32330141	+	Frame_Shift_Del	DEL	GGTCA	GGTCA	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	GGTCA	GGTCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	32330137	32330141	GGTCA	-	DEL	SLC12A6	NM_133647	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1578_1574	p.L525fs	1.000:1.000:1.000:0.995:0.994	HMMPfam_AA_permease	"HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1"	"(deletion:cds_exon[32330124,32330222])"	no_errors
SLC27A2	11001	hgsc.bcm.edu	36	15	48277034	48277034	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	48277034	48277034	A	G	SNP	SLC27A2	NM_003645	human	genbank	54_36p	1	reviewed	missense	c.524	p.D175G	0.91	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
SLC28A1	9154	hgsc.bcm.edu	36	15	83248464	83248464	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	83248464	83248464	T	A	SNP	SLC28A1	NM_004213	human	genbank	54_36p	1	validated	missense	c.594	p.H198Q	0.94	HMMPfam_Nucleos_tra2_N	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SLTM	79811	hgsc.bcm.edu	36	15	56976705	56976705	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	56976705	56976705	A	G	SNP	SLTM	ENST00000249735	human	ensembl	54_36p	-1	known	missense	c.461	p.V154A	1	NULL	"superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	-	no_errors
SPG11	80208	hgsc.bcm.edu	36	15	42699756	42699756	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	42699756	42699756	G	A	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	silent	c.2758	p.L920	1	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
SPRED1	161742	hgsc.bcm.edu	36	15	36430643	36430643	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	36430643	36430643	A	C	SNP	SPRED1	NM_152594	human	genbank	54_36p	1	reviewed	missense	c.821	p.D274A	1	NULL	"HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_Sprouty"	-	no_errors
SQRDL	58472	hgsc.bcm.edu	36	15	43741448	43741448	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	43741448	43741448	C	T	SNP	SQRDL	NM_021199	human	genbank	54_36p	1	provisional	missense	c.238	p.H80Y	1	"superfamily_SSF51905,HMMPfam_Pyr_redox_2"	"superfamily_SSF51905,HMMPfam_Pyr_redox_2"	-	no_errors
TARSL2	123283	hgsc.bcm.edu	36	15	100043682	100043682	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	100043682	100043682	A	C	SNP	TARSL2	NM_152334	human	genbank	54_36p	-1	validated	missense	c.1427	p.F476C	1	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b"	"HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
TBC1D21	161514	hgsc.bcm.edu	36	15	71964280	71964280	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	71964280	71964280	A	T	SNP	TBC1D21	NM_153356	human	genbank	54_36p	1	provisional	missense	c.473	p.Q158L	0.98	"superfamily_RabGAP_TBC,HMMSmart_TBC"	"superfamily_RabGAP_TBC,HMMSmart_TBC"	-	no_errors
TBC1D21	161514	hgsc.bcm.edu	36	15	71965556	71965556	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	71965556	71965556	G	C	SNP	TBC1D21	NM_153356	human	genbank	54_36p	1	provisional	missense	c.664	p.A222P	1	"HMMSmart_TBC,superfamily_RabGAP_TBC"	"HMMSmart_TBC,superfamily_RabGAP_TBC"	-	no_errors
THAP10	56906	hgsc.bcm.edu	36	15	68961967	68961967	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	68961967	68961967	T	C	SNP	THAP10	NM_020147	human	genbank	54_36p	-1	provisional	silent	c.654	p.R218	0	NULL	"HMMPfam_THAP,HMMSmart_SM00692"	-	no_errors
TLN2	83660	hgsc.bcm.edu	36	15	60827911	60827911	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	60827911	60827911	C	T	SNP	TLN2	NM_015059	human	genbank	54_36p	1	reviewed	silent	c.4095	p.C1365	1	NULL	"PatternScan_FERM_1,HMMSmart_B41,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ"	-	no_errors
TM2D3	80213	hgsc.bcm.edu	36	15	100000284	100000284	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	100000284	100000284	A	T	SNP	TM2D3	NM_078474	human	genbank	54_36p	-1	reviewed	missense	c.665	p.L222Q	1	HMMPfam_TM2	HMMPfam_TM2	-	no_errors
TMCO5A	145942	hgsc.bcm.edu	36	15	36022863	36022863	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	15	36022863	36022863	A	G	SNP	TMCO5A	NM_152453	human	genbank	54_36p	1	provisional	missense	c.599	p.E200G	0	NULL	NULL	-	no_errors
TMEM62	80021	hgsc.bcm.edu	36	15	41226042	41226042	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	41226042	41226042	G	A	SNP	TMEM62	NM_024956	human	genbank	54_36p	1	provisional	missense	c.536	p.G179D	1	superfamily_SSF56300	superfamily_SSF56300	-	no_errors
TMOD2	29767	hgsc.bcm.edu	36	15	49846027	49846027	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	15	49846027	49846027	G	C	SNP	TMOD2	NM_014548	human	genbank	54_36p	1	reviewed	missense	c.97	p.E33Q	1	HMMPfam_Tropomodulin	"HMMPfam_Tropomodulin,superfamily_SSF52047"	-	no_errors
TP53BP1	7158	hgsc.bcm.edu	36	15	41507627	41507627	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	41507627	41507627	G	A	SNP	TP53BP1	NM_005657	human	genbank	54_36p	-1	validated	missense	c.3692	p.P1231L	1	NULL	"HMMPfam_53-BP1_Tudor,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_BRCT"	-	no_errors
TP53BP1	7158	hgsc.bcm.edu	36	15	41558900	41558900	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	15	41558900	41558900	G	A	SNP	TP53BP1	NM_005657	human	genbank	54_36p	-1	validated	missense	c.760	p.P254S	0	NULL	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_53-BP1_Tudor,superfamily_Tudor/PWWP/MBT"	-	no_errors
TYRO3	7301	hgsc.bcm.edu	36	15	39644530	39644530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	15	39644530	39644530	C	T	SNP	TYRO3	NM_006293	human	genbank	54_36p	1	provisional	missense	c.682	p.P228S	1	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
UBL7	84993	hgsc.bcm.edu	36	15	72530914	72530914	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	72530914	72530914	C	T	SNP	UBL7	NM_032907	human	genbank	54_36p	-1	validated	missense	c.388	p.V130I	1	NULL	"HMMSmart_UBQ,superfamily_SSF54236,HMMPfam_ubiquitin,superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA"	-	no_errors
ZFP106	64397	hgsc.bcm.edu	36	15	40521625	40521625	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	15	40521625	40521625	T	C	SNP	ZFP106	NM_022473	human	genbank	54_36p	-1	provisional	missense	c.3632	p.N1211S	0.4	NULL	"PatternScan_WD_REPEATS_1,HMMSmart_ZnF_C2H2,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMSmart_PQQ,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF592	9640	hgsc.bcm.edu	36	15	83143379	83143379	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	15	83143379	83143379	C	A	SNP	ZNF592	NM_014630	human	genbank	54_36p	1	validated	missense	c.3071	p.T1024N	0.99	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ABCA3	21	hgsc.bcm.edu	36	16	2276769	2276769	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	2276769	2276769	G	A	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	missense	c.3205	p.H1069Y	0.04	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA3	21	hgsc.bcm.edu	36	16	2279473	2279473	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	2279473	2279473	A	G	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	missense	c.2663	p.I888T	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCC1	4363	hgsc.bcm.edu	36	16	16037833	16037833	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	16037833	16037833	G	A	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	silent	c.681	p.L227	1	NULL	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC12	94160	hgsc.bcm.edu	36	16	46732202	46732202	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	46732202	46732202	G	A	SNP	ABCC12	NM_033226	human	genbank	54_36p	-1	reviewed	missense	c.554	p.A185V	1	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ACSM3	6296	hgsc.bcm.edu	36	16	20688980	20688980	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	20688980	20688980	C	G	SNP	ACSM3	NM_005622	human	genbank	54_36p	1	validated	silent	c.123	p.S41	0.67	superfamily_Acetyl-CoA synthetase-like	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ADCY7	113	hgsc.bcm.edu	36	16	48898514	48898515	+	In_Frame_Ins	INS	-	-	GTG	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	48898514	48898515	-	GTG	INS	ADCY7	NM_001114	human	genbank	54_36p	1	reviewed	in_frame_ins	c.1805_1806	p.603in_frame_insW	0.472:0.482	NULL	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
AP1G1	164	hgsc.bcm.edu	36	16	70330380	70330380	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	70330380	70330380	A	G	SNP	AP1G1	NM_001030007	human	genbank	54_36p	-1	reviewed	missense	c.2243	p.M748T	1	"superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809"	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809"	-	no_errors
ARHGAP17	55114	hgsc.bcm.edu	36	16	24866326	24866328	+	In_Frame_Del	DEL	AGT	AGT	-	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	AGT	AGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	24866326	24866328	AGT	-	DEL	ARHGAP17	NM_001006634	human	genbank	54_36p	-1	validated	in_frame_del	c.1219_1217	p.NL406in_frame_delM	1.000:1.000:1.000	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"HMMPfam_BAR,HMMSmart_SM00721,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,PatternScan_AA_TRNA_LIGASE_I"	"(deletion:cds_exon[24866304,24866417])"	no_errors
ATF7IP2	80063	hgsc.bcm.edu	36	16	10432514	10432514	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	10432514	10432514	A	G	SNP	ATF7IP2	NM_024997	human	genbank	54_36p	1	validated	missense	c.536	p.Q179R	0	NULL	NULL	-	no_errors
ATP2A1	487	hgsc.bcm.edu	36	16	28820694	28820694	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	28820694	28820694	G	T	SNP	ATP2A1	NM_173201	human	genbank	54_36p	1	reviewed	missense	c.2110	p.G704C	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Hydrolase,superfamily_HAD-like"	###############################################################################################################################################################################################################################################################	-	no_errors
BFAR	51283	hgsc.bcm.edu	36	16	14656541	14656542	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	14656541	14656542	-	C	INS	BFAR	NM_016561	human	genbank	54_36p	1	provisional	frame_shift_ins	c.756_757	p.Q254fs	1.000:1.000	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
SLX4	84464	hgsc.bcm.edu	36	16	3596513	3596513	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	3596513	3596513	G	C	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	silent	c.723	p.V241	0.04	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
C16orf5	29965	hgsc.bcm.edu	36	16	4502578	4502578	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	4502578	4502578	C	A	SNP	C16orf5	NM_013399	human	genbank	54_36p	-1	validated	missense	c.623	p.C208F	1	NULL	"HMMSmart_SM00714,HMMPfam_zf-LITAF-like"	-	no_errors
C16orf70	80262	hgsc.bcm.edu	36	16	65738489	65738490	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	65738489	65738490	-	C	INS	C16orf70	NM_025187	human	genbank	54_36p	1	provisional	frame_shift_ins	c.1223_1224	p.R411fs	1.000:1.000	NULL	HMMPfam_UPF0183	-	no_errors
C16orf79	283870	hgsc.bcm.edu	36	16	2199694	2199694	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	2199694	2199694	C	A	SNP	C16orf79	NM_182563	human	genbank	54_36p	-1	predicted	missense	c.453	p.W151C	0	NULL	NULL	-	no_errors
C16orf89	146556	hgsc.bcm.edu	36	16	5055851	5055851	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	5055851	5055851	G	A	SNP	C16orf89	NM_152459	human	genbank	54_36p	-1	validated	silent	c.174	p.S58	0.24	NULL	PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
CACNG3	10368	hgsc.bcm.edu	36	16	24265611	24265611	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	24265611	24265611	C	A	SNP	CACNG3	NM_006539	human	genbank	54_36p	1	reviewed	nonsense	c.267	p.Y89*	1	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
CACNG3	10368	hgsc.bcm.edu	36	16	24265617	24265617	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	24265617	24265617	G	A	SNP	CACNG3	NM_006539	human	genbank	54_36p	1	reviewed	silent	c.273	p.Q91	0.98	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
CCL17	6361	hgsc.bcm.edu	36	16	56006603	56006603	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	56006603	56006603	T	A	SNP	CCL17	NM_002987	human	genbank	54_36p	1	reviewed	missense	c.180	p.D60E	0.04	"HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC"	"HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC"	-	no_errors
CCNF	899	hgsc.bcm.edu	36	16	2435507	2435507	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	2435507	2435507	T	C	SNP	CCNF	NM_001761	human	genbank	54_36p	1	reviewed	missense	c.977	p.F326S	1	"HMMPfam_Cyclin_N,superfamily_Cyclin_like,PatternScan_CYCLINS,HMMSmart_CYCLIN"	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,HMMPfam_Cyclin_N,superfamily_Cyclin_like,PatternScan_CYCLINS,HMMSmart_CYCLIN,HMMPfam_Cyclin_C"	-	no_errors
CDH1	999	hgsc.bcm.edu	36	16	67403201	67403201	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	G	A	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	67403201	67403201	A	G	SNP	CDH1	NM_004360	human	genbank	54_36p	1	reviewed	missense	c.946	p.M316V	0.91	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH11	1009	hgsc.bcm.edu	36	16	63539460	63539460	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	63539460	63539460	T	A	SNP	CDH11	NM_001797	human	genbank	54_36p	-1	reviewed	missense	c.1938	p.E646D	1	HMMPfam_Cadherin_C	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH5	1003	hgsc.bcm.edu	36	16	64978238	64978238	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	64978238	64978238	A	C	SNP	CDH5	NM_001795	human	genbank	54_36p	1	reviewed	missense	c.236	p.N79T	0.99	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CES5A	221223	hgsc.bcm.edu	36	16	54438072	54438072	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	54438072	54438072	G	A	SNP	CES7	NM_145024	human	genbank	54_36p	-1	validated	missense	c.1370	p.S457F	0.24	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1"	-	no_errors
CES5A	221223	hgsc.bcm.edu	36	16	54452929	54452929	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	54452929	54452929	G	T	SNP	CES7	NM_145024	human	genbank	54_36p	-1	validated	missense	c.811	p.L271M	0.99	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_SSF53474"	-	no_errors
CIITA	4261	hgsc.bcm.edu	36	16	10908922	10908922	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	10908922	10908922	C	A	SNP	CIITA	NM_000246	human	genbank	54_36p	1	reviewed	missense	c.2072	p.A691D	0	NULL	"HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1"	-	no_errors
CLCN7	1186	hgsc.bcm.edu	36	16	1455272	1455272	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	1455272	1455272	G	A	SNP	CLCN7	NM_001287	human	genbank	54_36p	-1	reviewed	silent	c.210	p.D70	1	NULL	"superfamily_Cl-channel_core,HMMPfam_Voltage_CLC,HMMPfam_CBS,HMMSmart_CBS,superfamily_SSF54631"	-	no_errors
CLEC16A	23274	hgsc.bcm.edu	36	16	10972560	10972560	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	10972560	10972560	A	G	SNP	CLEC16A	NM_015226	human	genbank	54_36p	1	validated	silent	c.570	p.V190	0.99	HMMPfam_FPL	"HMMPfam_FPL,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
CREBBP	1387	hgsc.bcm.edu	36	16	3729725	3729725	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	3729725	3729725	A	C	SNP	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	missense	c.4135	p.F1379V	1	HMMPfam_DUF906	###############################################################################################################################################################################################################################################################	-	no_errors
CREBBP	1387	hgsc.bcm.edu	36	16	3730513	3730513	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	3730513	3730513	G	A	SNP	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	nonsense	c.4021	p.R1341*	1	HMMPfam_DUF906	###############################################################################################################################################################################################################################################################	-	no_errors
CREBBP	1387	hgsc.bcm.edu	36	16	3759258	3759258	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	3759258	3759258	G	-	DEL	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2978	p.P993fs	0.02	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[3759176,3759355])"	no_errors
CREBBP	1387	hgsc.bcm.edu	36	16	3760802	3760802	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	3760802	3760802	C	T	SNP	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	missense	c.2650	p.A884T	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DNAH3	55567	hgsc.bcm.edu	36	16	20888755	20888755	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	20888755	20888755	G	A	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.8318	p.A2773V	0.98	NULL	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy"	-	no_errors
DPEP3	64180	hgsc.bcm.edu	36	16	66567359	66567360	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	66567359	66567360	-	A	INS	DPEP3	NM_022357	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1352_1351	p.P451fs	0.372:0.400	superfamily_Metallo-dependent hydrolases	"superfamily_Metallo-dependent hydrolases,HMMPfam_Peptidase_M19,PatternScan_RENAL_DIPEPTIDASE_1"	-	no_errors
DUS2L	54920	hgsc.bcm.edu	36	16	66668099	66668100	+	Frame_Shift_Del	DEL	GT	GT	-	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	66668099	66668100	GT	-	DEL	DUS2L	NM_017803	human	genbank	54_36p	1	provisional	frame_shift_del	c.1146_1147	p.K382fs	1.000:0.985	"superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358"	"superfamily_FMN-linked oxidoreductases,HMMPfam_Dus,PatternScan_UPF0034,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358"	"(deletion:cds_exon[66668036,66668123])"	no_errors
EEF2K	29904	hgsc.bcm.edu	36	16	22185533	22185533	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	22185533	22185533	C	G	SNP	EEF2K	NM_013302	human	genbank	54_36p	1	reviewed	nonsense	c.1599	p.Y533*	1	HMMPfam_Sel1	"superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase,HMMPfam_Sel1,superfamily_SSF81901"	-	no_errors
ERN2	10595	hgsc.bcm.edu	36	16	23611111	23611111	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	23611111	23611111	A	T	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	missense	c.2287	p.Y763N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	-	no_errors
FAM65A	79567	hgsc.bcm.edu	36	16	66134424	66134424	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	66134424	66134424	C	A	SNP	FAM65A	NM_024519	human	genbank	54_36p	1	validated	nonsense	c.2234	p.S745*	0.01	NULL	superfamily_ARM-type_fold	-	no_errors
FANCA	2175	hgsc.bcm.edu	36	16	88342636	88342636	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	88342636	88342636	T	C	SNP	FANCA	NM_000135	human	genbank	54_36p	-1	reviewed	missense	c.3280	p.S1094G	0	NULL	HMMPfam_Fanconi_A	-	no_errors
FANCA	2175	hgsc.bcm.edu	36	16	88343806	88343807	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	88343806	88343807	-	A	INS	FANCA	NM_000135	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.3072_3071	p.M1024fs	0.930:0.983	NULL	HMMPfam_Fanconi_A	-	no_errors
FANCA	2175	hgsc.bcm.edu	36	16	88376984	88376984	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	88376984	88376984	G	C	SNP	FANCA	NM_000135	human	genbank	54_36p	-1	reviewed	missense	c.1498	p.P500A	0.75	NULL	HMMPfam_Fanconi_A	-	no_errors
FBXO31	79791	hgsc.bcm.edu	36	16	85951471	85951471	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	85951471	85951471	A	G	SNP	FBXO31	NM_024735	human	genbank	54_36p	-1	validated	missense	c.343	p.Y115H	1	superfamily_F-box domain	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256"	-	no_errors
FUK	197258	hgsc.bcm.edu	36	16	69055049	69055049	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	69055049	69055049	G	T	SNP	FUK	NM_145059	human	genbank	54_36p	1	reviewed	silent	c.105	p.R35	0.4	NULL	"HMMPfam_Fucokinase,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_GHMP_kinases_N,superfamily_GHMP Kinase C-terminal domain,HMMPfam_GHMP_kinases_C"	-	no_errors
GABARAPL2	11345	hgsc.bcm.edu	36	16	74168751	74168751	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	74168751	74168751	A	G	SNP	GABARAPL2	NM_007285	human	genbank	54_36p	1	provisional	missense	c.337	p.N113D	1	"superfamily_Ubiquitin-like,HMMPfam_MAP1_LC3"	"superfamily_Ubiquitin-like,HMMPfam_MAP1_LC3"	-	no_errors
GLG1	2734	hgsc.bcm.edu	36	16	73057104	73057104	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	73057104	73057104	G	A	SNP	GLG1	NM_012201	human	genbank	54_36p	-1	validated	missense	c.2638	p.L880F	1	HMMPfam_Cys_rich_FGFR	HMMPfam_Cys_rich_FGFR	-	no_errors
GLG1	2734	hgsc.bcm.edu	36	16	73057108	73057108	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	73057108	73057108	G	C	SNP	GLG1	NM_012201	human	genbank	54_36p	-1	validated	nonsense	c.2634	p.Y878*	0.85	HMMPfam_Cys_rich_FGFR	HMMPfam_Cys_rich_FGFR	-	no_errors
GLIS2	84662	hgsc.bcm.edu	36	16	4323357	4323358	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	4323357	4323358	-	T	INS	GLIS2	NM_032575	human	genbank	54_36p	1	validated	frame_shift_ins	c.181_182	p.N62fs	1.000:1.000	NULL	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
GP2	2813	hgsc.bcm.edu	36	16	20243023	20243023	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	20243023	20243023	G	C	SNP	GP2	NM_001007240	human	genbank	54_36p	-1	validated	missense	c.151	p.P51A	0.1	NULL	"HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
GP2	2813	hgsc.bcm.edu	36	16	20243031	20243031	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	20243031	20243031	C	G	SNP	GP2	NM_001007240	human	genbank	54_36p	-1	validated	missense	c.143	p.C48S	0.13	NULL	"HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
GPR114	221188	hgsc.bcm.edu	36	16	56158066	56158067	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	56158066	56158067	-	G	INS	GPR114	NM_153837	human	genbank	54_36p	1	provisional	frame_shift_ins	c.601_602	p.W204fs	0.479:0.999	"HMMPfam_GPS,HMMSmart_SM00303"	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
GPT2	84706	hgsc.bcm.edu	36	16	45489108	45489108	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	45489108	45489108	C	T	SNP	GPT2	NM_133443	human	genbank	54_36p	1	validated	silent	c.291	p.D97	0.97	superfamily_PLP-dependent transferases	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	-	no_errors
GRIN2A	2903	hgsc.bcm.edu	36	16	9765235	9765235	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	9765235	9765235	T	A	SNP	GRIN2A	NM_000833	human	genbank	54_36p	-1	reviewed	missense	c.3667	p.T1223S	1	HMMPfam_NMDAR2_C	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C"	-	no_errors
HAGH	3029	hgsc.bcm.edu	36	16	1812926	1812926	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	1812926	1812926	G	C	SNP	HAGH	NM_005326	human	genbank	54_36p	-1	reviewed	missense	c.190	p.L64V	1	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B"	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B"	-	no_errors
HYDIN	54768	hgsc.bcm.edu	36	16	69418777	69418777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	69418777	69418777	G	A	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.14312	p.P4771L	0.03	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	hgsc.bcm.edu	36	16	69453539	69453539	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	69453539	69453539	C	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.11687	p.G3896E	0.09	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	hgsc.bcm.edu	36	16	69556200	69556200	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	69556200	69556200	T	A	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.5717	p.K1906I	0.98	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	hgsc.bcm.edu	36	16	69619066	69619066	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	69619066	69619066	C	T	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.2982	p.M994I	1	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
IFT140	9742	hgsc.bcm.edu	36	16	1515306	1515306	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	1515306	1515306	G	A	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	missense	c.2791	p.R931C	0.99	superfamily_TPR-like	"superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like"	-	no_errors
ITGAL	3683	hgsc.bcm.edu	36	16	30414931	30414931	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	30414931	30414931	G	A	SNP	ITGAL	NM_002209	human	genbank	54_36p	1	reviewed	missense	c.1516	p.E506K	0	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
JMJD5	79831	hgsc.bcm.edu	36	16	27129006	27129006	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	27129006	27129006	G	T	SNP	JMJD5	NM_024773	human	genbank	54_36p	1	reviewed	missense	c.61	p.A21S	0.86	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558"	-	no_errors
KIAA0182	23199	hgsc.bcm.edu	36	16	84225055	84225055	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	84225055	84225055	G	A	SNP	KIAA0182	NM_014615	human	genbank	54_36p	1	validated	silent	c.42	p.G14	1	NULL	NULL	-	no_errors
KIAA0430	9665	hgsc.bcm.edu	36	16	15637141	15637141	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	15637141	15637141	C	A	SNP	KIAA0430	NM_014647	human	genbank	54_36p	-1	validated	missense	c.704	p.G235V	0.98	NULL	"HMMPfam_DUF537,superfamily_RNA-binding domain RBD,HMMSmart_SM00360"	-	no_errors
KIAA0430	9665	hgsc.bcm.edu	36	16	15637503	15637506	+	Frame_Shift_Del	DEL	CATT	CATT	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	CATT	CATT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	15637503	15637506	CATT	-	DEL	KIAA0430	NM_014647	human	genbank	54_36p	-1	validated	frame_shift_del	c.342_339	p.M114fs	0.242:0.232:0.142:0.134	NULL	"HMMSmart_SM00360,HMMPfam_DUF537,superfamily_RNA-binding domain RBD"	"(deletion:cds_exon[15637014,15637700])"	no_errors
KIAA0556	23247	hgsc.bcm.edu	36	16	27537315	27537315	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	27537315	27537315	G	C	SNP	KIAA0556	NM_015202	human	genbank	54_36p	1	validated	missense	c.132	p.Q44H	1	NULL	"superfamily_Galactose-binding domain-like,PatternScan_AKH"	-	no_errors
MGRN1	23295	hgsc.bcm.edu	36	16	4640454	4640455	+	Frame_Shift_Ins	INS	-	-	GCCG	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	4640454	4640455	-	GCCG	INS	MGRN1	NM_015246	human	genbank	54_36p	1	validated	frame_shift_ins	c.176_177	p.D59fs	1.000:1.000	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
MVP	9961	hgsc.bcm.edu	36	16	29759024	29759024	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	29759024	29759024	C	A	SNP	MVP	NM_005115	human	genbank	54_36p	1	reviewed	missense	c.934	p.P312T	1	HMMPfam_Vault	HMMPfam_Vault	-	no_errors
MYH11	4629	hgsc.bcm.edu	36	16	15761906	15761906	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	15761906	15761906	T	C	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.1261	p.K421E	1	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head"	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH11	4629	hgsc.bcm.edu	36	16	15777486	15777486	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	15777486	15777486	G	C	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.860	p.T287R	0.99	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
N4BP1	9683	hgsc.bcm.edu	36	16	47153235	47153235	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	47153235	47153235	C	G	SNP	N4BP1	NM_153029	human	genbank	54_36p	-1	validated	missense	c.820	p.E274Q	0.41	NULL	NULL	-	no_errors
NAE1	8883	hgsc.bcm.edu	36	16	65400416	65400416	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	65400416	65400416	T	G	SNP	NAE1	NM_003905	human	genbank	54_36p	-1	reviewed	missense	c.1214	p.D405A	1	superfamily_Activating enzymes of the ubiquitin-like proteins	"superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF"	-	no_errors
NLRC5	84166	hgsc.bcm.edu	36	16	55673842	55673842	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	55673842	55673842	C	-	DEL	NLRC5	NM_032206	human	genbank	54_36p	1	validated	frame_shift_del	c.5502	p.I1836fs	0.14	superfamily_RNI-like	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1"	"(deletion:cds_exon[55673830,55673941])"	no_errors
NOMO2	283820	hgsc.bcm.edu	36	16	18427994	18427994	+	Silent	SNP	A	A	G	rs8921	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	18427994	18427994	A	G	SNP	NOMO2	NM_001004060	human	genbank	54_36p	-1	reviewed	silent	c.3318	p.D1106	1	NULL	"superfamily_Starch-binding domain-like,HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain"	-	no_errors
NOMO2	283820	hgsc.bcm.edu	36	16	18436033	18436033	+	Silent	SNP	G	G	T	rs393246	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	18436033	18436033	G	T	SNP	NOMO2	NM_001004060	human	genbank	54_36p	-1	reviewed	silent	c.2736	p.G912	1	"HMMPfam_Cna_B,superfamily_Starch-binding domain-like"	"HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain,superfamily_Starch-binding domain-like"	-	no_errors
NOMO2	283820	hgsc.bcm.edu	36	16	18457472	18457472	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	18457472	18457472	C	T	SNP	NOMO2	NM_001004060	human	genbank	54_36p	-1	reviewed	missense	c.1097	p.R366H	1	superfamily_Starch-binding domain-like	"HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain,superfamily_Starch-binding domain-like"	-	no_errors
OTOA	146183	hgsc.bcm.edu	36	16	21647159	21647159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	21647159	21647159	G	A	SNP	OTOA	NM_144672	human	genbank	54_36p	1	provisional	missense	c.2113	p.A705T	1	NULL	NULL	-	no_errors
PHKG2	5261	hgsc.bcm.edu	36	16	30675919	30675919	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	30675919	30675919	G	A	SNP	PHKG2	NM_000294	human	genbank	54_36p	1	provisional	silent	c.1221	p.*407	0.22	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PLA2G15	23659	hgsc.bcm.edu	36	16	66840782	66840782	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	66840782	66840782	C	T	SNP	PLA2G15	NM_012320	human	genbank	54_36p	1	reviewed	silent	c.216	p.Y72	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_LACT"	"superfamily_alpha/beta-Hydrolases,HMMPfam_LACT"	-	no_errors
PLA2G15	23659	hgsc.bcm.edu	36	16	66850922	66850923	+	Frame_Shift_Del	DEL	GT	GT	-	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	66850922	66850923	GT	-	DEL	PLA2G15	NM_012320	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1100_1101	p.A368fs	1.000:0.990	"HMMPfam_LACT,superfamily_alpha/beta-Hydrolases"	"HMMPfam_LACT,superfamily_alpha/beta-Hydrolases"	"(deletion:cds_exon[66850550,66851061])"	no_errors
PRKCB	5579	hgsc.bcm.edu	36	16	23907388	23907388	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	23907388	23907388	C	T	SNP	PRKCB	NM_002738	human	genbank	54_36p	1	reviewed	silent	c.264	p.G88	0.82	"superfamily_Cysteine-rich domain,HMMPfam_C1_1"	###############################################################################################################################################################################################################################################################	-	no_errors
PRSS27	83886	hgsc.bcm.edu	36	16	2703552	2703552	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	2703552	2703552	C	G	SNP	PRSS27	NM_031948	human	genbank	54_36p	-1	validated	missense	c.657	p.E219D	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
RBBP6	5930	hgsc.bcm.edu	36	16	24485992	24485992	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	24485992	24485992	C	T	SNP	RBBP6	NM_006910	human	genbank	54_36p	1	reviewed	silent	c.1617	p.S539	1	NULL	"HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00184"	-	no_errors
RBBP6	5930	hgsc.bcm.edu	36	16	24486179	24486179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	24486179	24486179	C	T	SNP	RBBP6	NM_006910	human	genbank	54_36p	1	reviewed	missense	c.1804	p.P602S	1	NULL	"HMMSmart_SM00184,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_U-box,HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,superfamily_RING/U-box"	-	no_errors
RBBP6	5930	hgsc.bcm.edu	36	16	24489826	24489826	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	24489826	24489826	T	C	SNP	RBBP6	NM_006910	human	genbank	54_36p	1	reviewed	missense	c.3938	p.M1313T	1	NULL	"HMMSmart_SM00184,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_U-box,HMMPfam_DWNN,superfamily_Retrovirus zinc finger-like domains,superfamily_RING/U-box"	-	no_errors
RBL2	5934	hgsc.bcm.edu	36	16	52055717	52055717	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	52055717	52055717	C	G	SNP	RBL2	NM_005611	human	genbank	54_36p	1	validated	missense	c.1639	p.P547A	1	"HMMPfam_RB_A,superfamily_Cyclin_like"	"HMMSmart_CYCLIN,HMMPfam_RB_A,superfamily_Cyclin_like,HMMPfam_RB_B"	-	no_errors
RRN3	54700	hgsc.bcm.edu	36	16	15066636	15066636	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	15066636	15066636	C	-	DEL	RRN3	NM_018427	human	genbank	54_36p	-1	validated	frame_shift_del	c.1647	p.Q550fs	1	HMMPfam_RRN3	HMMPfam_RRN3	"(deletion:cds_exon[15066577,15066729])"	no_errors
SALL1	6299	hgsc.bcm.edu	36	16	49731057	49731057	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	49731057	49731057	C	G	SNP	SALL1	NM_002968	human	genbank	54_36p	-1	reviewed	missense	c.2577	p.E859D	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
SH2B1	25970	hgsc.bcm.edu	36	16	28791510	28791510	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	28791510	28791510	C	T	SNP	SH2B1	NM_015503	human	genbank	54_36p	1	reviewed	missense	c.1880	p.S627F	1	superfamily_SH2 domain	"HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
SIAH1	6477	hgsc.bcm.edu	36	16	46953802	46953802	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	46953802	46953802	G	C	SNP	SIAH1	NM_001006610	human	genbank	54_36p	-1	reviewed	silent	c.132	p.T44	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_Sina,superfamily_Traf_like"	-	no_errors
SLC12A3	6559	hgsc.bcm.edu	36	16	55483539	55483539	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	55483539	55483539	C	A	SNP	SLC12A3	NM_000339	human	genbank	54_36p	1	reviewed	missense	c.2412	p.S804R	0	NULL	"HMMPfam_AA_permease_N,HMMPfam_AA_permease"	-	no_errors
SLC6A2	6530	hgsc.bcm.edu	36	16	54263578	54263578	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	54263578	54263578	G	T	SNP	SLC6A2	NM_001043	human	genbank	54_36p	1	validated	nonsense	c.634	p.E212*	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLC9A5	6553	hgsc.bcm.edu	36	16	65846483	65846483	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	65846483	65846483	G	A	SNP	SLC9A5	NM_004594	human	genbank	54_36p	1	validated	silent	c.549	p.A183	0.11	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
SPG7	6687	hgsc.bcm.edu	36	16	88140595	88140596	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	88140595	88140596	-	G	INS	SPG7	NM_003119	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1478_1479	p.K494fs	1.000:1.000	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA"	"HMMPfam_FtsH_ext,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,HMMPfam_Peptidase_M41"	-	no_errors
SRCAP	10847	hgsc.bcm.edu	36	16	30639697	30639697	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	30639697	30639697	G	C	SNP	SRCAP	NM_006662	human	genbank	54_36p	1	validated	missense	c.3150	p.M1050I	1	NULL	"HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_AT_hook,HMMSmart_SM00384"	-	no_errors
SRL	6345	hgsc.bcm.edu	36	16	4182769	4182769	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	4182769	4182769	C	T	SNP	SRL	NM_001098814	human	genbank	54_36p	-1	validated	missense	c.808	p.G270R	1	superfamily_SSF52540	superfamily_SSF52540	-	no_errors
SRRM2	23524	hgsc.bcm.edu	36	16	2753121	2753121	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	2753121	2753121	C	T	SNP	SRRM2	NM_016333	human	genbank	54_36p	1	validated	missense	c.2591	p.S864F	0.25	NULL	HMMPfam_cwf21	-	no_errors
SRRM2	23524	hgsc.bcm.edu	36	16	2755497	2755497	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	2755497	2755497	A	T	SNP	SRRM2	NM_016333	human	genbank	54_36p	1	validated	missense	c.4967	p.E1656V	0.98	NULL	HMMPfam_cwf21	-	no_errors
ST3GAL2	6483	hgsc.bcm.edu	36	16	68973235	68973235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	68973235	68973235	C	T	SNP	ST3GAL2	NM_006927	human	genbank	54_36p	-1	reviewed	missense	c.911	p.R304Q	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
ST3GAL2	6483	hgsc.bcm.edu	36	16	68974620	68974620	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	16	68974620	68974620	A	G	SNP	ST3GAL2	NM_006927	human	genbank	54_36p	-1	reviewed	missense	c.733	p.S245P	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
TFAP4	7023	hgsc.bcm.edu	36	16	4252653	4252653	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	4252653	4252653	C	T	SNP	TFAP4	NM_003223	human	genbank	54_36p	-1	validated	missense	c.140	p.R47Q	1	superfamily_HLH_basic	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
THOC6	79228	hgsc.bcm.edu	36	16	3016880	3016880	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	3016880	3016880	G	C	SNP	THOC6	NM_024339	human	genbank	54_36p	1	validated	missense	c.598	p.A200P	0.94	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
TMED6	146456	hgsc.bcm.edu	36	16	67934832	67934832	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	67934832	67934832	A	G	SNP	TMED6	NM_144676	human	genbank	54_36p	-1	provisional	silent	c.702	p.D234	0.39	NULL	HMMPfam_EMP24_GP25L	-	no_errors
TNRC6A	27327	hgsc.bcm.edu	36	16	24709047	24709047	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	24709047	24709047	A	G	SNP	TNRC6A	NM_014494	human	genbank	54_36p	1	reviewed	missense	c.1583	p.N528S	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD"	-	no_errors
TUFM	7284	hgsc.bcm.edu	36	16	28763585	28763585	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	28763585	28763585	T	G	SNP	TUFM	NM_003321	human	genbank	54_36p	-1	reviewed	missense	c.619	p.T207P	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain"	-	no_errors
WFDC1	58189	hgsc.bcm.edu	36	16	82915529	82915529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	82915529	82915529	G	T	SNP	WFDC1	NM_021197	human	genbank	54_36p	1	reviewed	missense	c.566	p.G189V	1	NULL	"superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE"	-	no_errors
XPO6	23214	hgsc.bcm.edu	36	16	28026440	28026440	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	16	28026440	28026440	C	G	SNP	XPO6	NM_015171	human	genbank	54_36p	-1	provisional	missense	c.2401	p.G801R	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_Xpo1"	-	no_errors
XYLT1	64131	hgsc.bcm.edu	36	16	17135852	17135852	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	17135852	17135852	G	A	SNP	XYLT1	NM_022166	human	genbank	54_36p	-1	validated	missense	c.2006	p.T669M	0.91	NULL	HMMPfam_Branch	-	no_errors
XYLT1	64131	hgsc.bcm.edu	36	16	17160197	17160197	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	16	17160197	17160197	C	T	SNP	XYLT1	NM_022166	human	genbank	54_36p	-1	validated	missense	c.1360	p.D454N	1	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
ZFHX3	463	hgsc.bcm.edu	36	16	71384705	71384705	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	71384705	71384705	A	C	SNP	ZFHX3	NM_006885	human	genbank	54_36p	-1	validated	missense	c.9377	p.L3126R	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ZFHX3	100132068	hgsc.bcm.edu	36	16	71549101	71549101	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	71549101	71549101	C	G	SNP	LOC100132068	XM_001719562	human	genbank	54_36p	1	model	missense	c.46	p.H16D	1	NULL	PatternScan_ASP_PROTEASE	-	no_errors
ZFHX3	463	hgsc.bcm.edu	36	16	71549769	71549769	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	16	71549769	71549769	C	A	SNP	ZFHX3	NM_006885	human	genbank	54_36p	-1	validated	nonsense	c.1777	p.E593*	1	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF500	26048	hgsc.bcm.edu	36	16	4742731	4742731	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	16	4742731	4742731	C	T	SNP	ZNF500	NM_021646	human	genbank	54_36p	-1	validated	missense	c.1090	p.D364N	0.28	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF821	55565	hgsc.bcm.edu	36	16	70452024	70452024	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	16	70452024	70452024	C	G	SNP	ZNF821	NM_017530	human	genbank	54_36p	-1	provisional	missense	c.511	p.E171Q	0.94	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2"	-	no_errors
ABCA5	23461	hgsc.bcm.edu	36	17	64767510	64767510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	64767510	64767510	C	A	SNP	ABCA5	NM_018672	human	genbank	54_36p	-1	reviewed	missense	c.3663	p.W1221C	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA9	10350	hgsc.bcm.edu	36	17	64524034	64524034	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	64524034	64524034	A	C	SNP	ABCA9	NM_080283	human	genbank	54_36p	-1	reviewed	missense	c.2994	p.F998L	0.96	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	-	no_errors
ABR	29	hgsc.bcm.edu	36	17	856123	856124	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	856123	856124	-	G	INS	ABR	NM_021962	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2527_2526	p.I842fs	1.000:1.000	superfamily_GTPase activation domain GAP	###############################################################################################################################################################################################################################################################	-	no_errors
ACADVL	37	hgsc.bcm.edu	36	17	7068074	7068074	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7068074	7068074	G	A	SNP	ACADVL	NM_000018	human	genbank	54_36p	1	reviewed	missense	c.1396	p.D466N	1	"HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like"	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,PatternScan_ACYL_COA_DH_2"	-	no_errors
ACADVL	37	hgsc.bcm.edu	36	17	7068415	7068416	+	In_Frame_Ins	INS	-	-	TCC	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	7068415	7068416	-	TCC	INS	ACADVL	NM_000018	human	genbank	54_36p	1	reviewed	in_frame_ins	c.1584_1585	p.528in_frame_insS	0.998:0.998	NULL	"PatternScan_ACYL_COA_DH_1,PatternScan_ACYL_COA_DH_2,HMMPfam_Acyl-CoA_dh_1,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,superfamily_Acyl-CoA dehydrogenase NM domain-like"	-	no_errors
ACE	1636	hgsc.bcm.edu	36	17	58914588	58914588	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	58914588	58914588	G	A	SNP	ACE	NM_000789	human	genbank	54_36p	1	reviewed	missense	c.1523	p.R508Q	0.53	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ACE	1636	hgsc.bcm.edu	36	17	58925479	58925479	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	58925479	58925479	G	A	SNP	ACE	NM_000789	human	genbank	54_36p	1	reviewed	missense	c.3296	p.G1099D	1	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ACOX1	51	hgsc.bcm.edu	36	17	71457037	71457037	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	71457037	71457037	C	G	SNP	ACOX1	NM_004035	human	genbank	54_36p	-1	reviewed	splice_site	c.1585-1	e12-1	1	-	-	-	no_errors
ALOXE3	59344	hgsc.bcm.edu	36	17	7961899	7961899	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	7961899	7961899	G	T	SNP	ALOXE3	NM_021628	human	genbank	54_36p	-1	validated	missense	c.135	p.F45L	0.77	"HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase"	"HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2"	-	no_errors
AOC2	314	hgsc.bcm.edu	36	17	38250869	38250871	+	In_Frame_Del	DEL	CTT	CTT	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	38250869	38250871	CTT	-	DEL	AOC2	NM_009590	human	genbank	54_36p	1	reviewed	in_frame_del	c.700_702	p.L234in_frame_del	1.000:1.000:1.000	"superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN3"	"superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2"	"(deletion:cds_exon[38250170,38251757])"	no_errors
AOC2	314	hgsc.bcm.edu	36	17	38251215	38251216	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	38251215	38251216	-	G	INS	AOC2	NM_009590	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1046_1047	p.E351fs	0.997:0.994	"HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain"	"PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2,HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region"	-	no_errors
ARHGEF15	22899	hgsc.bcm.edu	36	17	8159931	8159932	+	In_Frame_Ins	INS	-	-	ATT	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	8159931	8159932	-	ATT	INS	ARHGEF15	NM_173728	human	genbank	54_36p	1	reviewed	in_frame_ins	c.1555_1556	p.ETYS519in_frame_insD*	1.000:1.000	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF"	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729"	-	no_errors
ARSG	22901	hgsc.bcm.edu	36	17	63892821	63892821	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	63892821	63892821	C	G	SNP	ARSG	NM_014960	human	genbank	54_36p	1	validated	missense	c.1004	p.T335R	1	"superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2"	-	no_errors
ATP2A3	489	hgsc.bcm.edu	36	17	3778023	3778023	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	3778023	3778023	C	G	SNP	ATP2A3	NM_174953	human	genbank	54_36p	-1	reviewed	splice_site	c.3139+1	e22+1	0	-	-	-	no_errors
AXIN2	8313	hgsc.bcm.edu	36	17	60984833	60984833	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	60984833	60984833	T	G	SNP	AXIN2	NM_004655	human	genbank	54_36p	-1	reviewed	missense	c.368	p.K123T	1	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_Axin_b-cat_bind,HMMPfam_DIX,HMMSmart_SM00021"	-	no_errors
BPTF	2186	hgsc.bcm.edu	36	17	63338405	63338405	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	63338405	63338405	A	-	DEL	BPTF	NM_182641	human	genbank	54_36p	1	reviewed	frame_shift_del	c.3943	p.I1315fs	0.36	NULL	"HMMPfam_FYDLN_acid,HMMPfam_DDT,HMMSmart_DDT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_EGF_2,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	"(deletion:cds_exon[63337455,63339765])"	no_errors
C17orf49	124944	hgsc.bcm.edu	36	17	6860705	6860705	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	6860705	6860705	C	A	SNP	C17orf49	NM_174893	human	genbank	54_36p	1	validated	missense	c.386	p.P129H	0.96	NULL	HMMSmart_SANT	-	no_errors
C17orf53	78995	hgsc.bcm.edu	36	17	39581475	39581475	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	39581475	39581475	C	-	DEL	C17orf53	NM_024032	human	genbank	54_36p	1	predicted	frame_shift_del	c.778	p.T261fs	0	NULL	NULL	"(deletion:cds_exon[39580752,39581921])"	no_errors
C17orf71	55181	hgsc.bcm.edu	36	17	54645299	54645299	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	54645299	54645299	A	C	SNP	C17orf71	NM_018149	human	genbank	54_36p	1	validated	missense	c.2333	p.N778T	1	HMMPfam_DUF2146	HMMPfam_DUF2146	-	no_errors
C17orf75	64149	hgsc.bcm.edu	36	17	27683051	27683051	+	Nonsense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	27683051	27683051	A	C	SNP	C17orf75	NM_022344	human	genbank	54_36p	-1	validated	nonsense	c.1035	p.Y345*	1	NULL	NULL	-	no_errors
CACNA1G	8913	hgsc.bcm.edu	36	17	46033183	46033183	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	46033183	46033183	C	G	SNP	CACNA1G	NM_018896	human	genbank	54_36p	1	validated	missense	c.3788	p.S1263C	0.99	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
CALCOCO2	10241	hgsc.bcm.edu	36	17	44292736	44292736	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	44292736	44292736	C	T	SNP	CALCOCO2	NM_005831	human	genbank	54_36p	1	reviewed	missense	c.1070	p.P357L	0	HMMPfam_CALCOCO1	HMMPfam_CALCOCO1	-	no_errors
CAMKK1	84254	hgsc.bcm.edu	36	17	3734453	3734453	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	3734453	3734453	G	A	SNP	CAMKK1	NM_172207	human	genbank	54_36p	-1	reviewed	silent	c.378	p.N126	1	superfamily_Kinase_like	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CCDC57	284001	hgsc.bcm.edu	36	17	77745287	77745287	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	77745287	77745287	T	G	SNP	CCDC57	NM_198082	human	genbank	54_36p	-1	validated	missense	c.636	p.K212N	0.96	NULL	NULL	-	no_errors
CCL15	6359	hgsc.bcm.edu	36	17	31349505	31349505	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	31349505	31349505	T	C	SNP	CCL15	NM_032965	human	genbank	54_36p	-1	reviewed	missense	c.172	p.I58V	0	"superfamily_Chemokine_IL8,HMMPfam_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC"	"superfamily_Chemokine_IL8,HMMPfam_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC"	-	no_errors
CCL7	6354	hgsc.bcm.edu	36	17	29622313	29622313	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	29622313	29622313	T	A	SNP	CCL7	NM_006273	human	genbank	54_36p	1	reviewed	missense	c.112	p.F38I	0	"HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC"	"HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC"	-	no_errors
CCT6B	10693	hgsc.bcm.edu	36	17	30303122	30303122	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	30303122	30303122	C	G	SNP	CCT6B	NM_006584	human	genbank	54_36p	-1	reviewed	missense	c.574	p.E192Q	1	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like"	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like"	-	no_errors
CDC27	996	hgsc.bcm.edu	36	17	42571159	42571159	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	42571159	42571159	A	C	SNP	CDC27	NM_001256	human	genbank	54_36p	-1	reviewed	missense	c.1649	p.V550G	1	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	C	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	42571161	42571161	A	C	SNP	CDC27	NM_001256	human	genbank	54_36p	-1	reviewed	missense	c.1647	p.D549E	1	superfamily_SSF48452	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
CDC27	996	hgsc.bcm.edu	36	17	42602388	42602388	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	42602388	42602388	T	-	DEL	CDC27	NM_001256	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.271	p.I91fs	1	superfamily_SSF48452	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	"(deletion:cds_exon[42602282,42602407])"	no_errors
CHAD	1101	hgsc.bcm.edu	36	17	45900481	45900481	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	45900481	45900481	C	G	SNP	CHAD	NM_001267	human	genbank	54_36p	-1	reviewed	silent	c.693	p.L231	0.99	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT"	-	no_errors
CHMP6	79643	hgsc.bcm.edu	36	17	76587526	76587526	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	76587526	76587526	C	T	SNP	CHMP6	NM_024591	human	genbank	54_36p	1	validated	missense	c.584	p.A195V	0.99	NULL	HMMPfam_Snf7	-	no_errors
CHRNB1	1140	hgsc.bcm.edu	36	17	7299395	7299395	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	7299395	7299395	G	A	SNP	CHRNB1	NM_000747	human	genbank	54_36p	1	reviewed	silent	c.1113	p.P371	0.27	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
COASY	80347	hgsc.bcm.edu	36	17	37969699	37969699	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	37969699	37969699	A	G	SNP	COASY	NM_001042529	human	genbank	54_36p	1	validated	missense	c.895	p.N299D	1	"superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2"	"superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2,HMMPfam_CoaE,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
COX10	1352	hgsc.bcm.edu	36	17	13913676	13913677	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	13913676	13913677	CA	-	DEL	COX10	NM_001303	human	genbank	54_36p	1	reviewed	frame_shift_del	c.29_30	p.R11fs	0.999:1.000	NULL	"HMMPfam_UbiA,PatternScan_UBIA"	"(deletion:cds_exon[13913648,13913690])"	no_errors
CYTH1	9267	hgsc.bcm.edu	36	17	74183809	74183809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	74183809	74183809	C	T	SNP	CYTH1	NM_004762	human	genbank	54_36p	-1	reviewed	missense	c.1156	p.A386T	1	NULL	"superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SPECC1	92521	hgsc.bcm.edu	36	17	20048385	20048385	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	20048385	20048385	C	G	SNP	CYTSB	NM_001033553	human	genbank	54_36p	1	validated	missense	c.431	p.T144R	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
SPECC1	92521	hgsc.bcm.edu	36	17	20091152	20091152	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	20091152	20091152	T	-	DEL	CYTSB	NM_001033553	human	genbank	54_36p	1	validated	frame_shift_del	c.2526	p.H842fs	0.78	NULL	"HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain"	"(deletion:cds_exon[20091124,20091224])"	no_errors
DBF4B	80174	hgsc.bcm.edu	36	17	40174303	40174303	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	40174303	40174303	C	G	SNP	DBF4B	NM_145663	human	genbank	54_36p	1	validated	missense	c.787	p.P263A	0.57	NULL	"HMMPfam_zf-DBF,HMMSmart_SM00586"	-	no_errors
DHX8	1659	hgsc.bcm.edu	36	17	38926649	38926649	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	38926649	38926649	G	T	SNP	DHX8	NM_004941	human	genbank	54_36p	1	reviewed	nonsense	c.1081	p.E361*	1	NULL	"superfamily_Nucleic_acid_OB,HMMPfam_S1,HMMSmart_S1,HMMSmart_DEXDc,superfamily_SSF52540,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
DNAH2	146754	hgsc.bcm.edu	36	17	7577141	7577141	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7577141	7577141	G	C	SNP	DNAH2	NM_020877	human	genbank	54_36p	1	validated	missense	c.411	p.Q137H	1	NULL	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DNAH2	146754	hgsc.bcm.edu	36	17	7577230	7577230	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	7577230	7577230	A	T	SNP	DNAH2	NM_020877	human	genbank	54_36p	1	validated	missense	c.500	p.Y167F	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH9	1770	hgsc.bcm.edu	36	17	11513178	11513178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	11513178	11513178	C	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	1	reviewed	missense	c.2804	p.P935L	0.95	NULL	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2"	-	no_errors
DNAI2	64446	hgsc.bcm.edu	36	17	69789693	69789693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	69789693	69789693	G	C	SNP	DNAI2	NM_023036	human	genbank	54_36p	1	validated	missense	c.142	p.D48H	0.99	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
DOC2BL	653051	hgsc.bcm.edu	36	17	11294	11295	+	In_Frame_Ins	INS	-	-	CAGTCC	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	11294	11295	-	CAGTCC	INS	LOC653051	XM_925795	human	genbank	54_36p	-1	model	in_frame_ins	c.677_676	p.226in_frame_insGT	1.000:1.000	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
DRG2	1819	hgsc.bcm.edu	36	17	17944642	17944645	+	Frame_Shift_Del	DEL	CAGT	CAGT	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	CAGT	CAGT	-	-	CAGT	CAGT	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	17944642	17944645	CAGT	-	DEL	DRG2	NM_001388	human	genbank	54_36p	1	reviewed	frame_shift_del	c.575_578	p.V193fs	1.000:0.971:1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1,PatternScan_GTP1_OBG,HMMPfam_TGS"	"(deletion:cds_exon[17944608,17944698])"	no_errors
EME1	146956	hgsc.bcm.edu	36	17	45808532	45808532	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	45808532	45808532	G	A	SNP	EME1	NM_152463	human	genbank	54_36p	1	provisional	silent	c.882	p.R294	1	HMMPfam_ERCC4	HMMPfam_ERCC4	-	no_errors
ENO3	2027	hgsc.bcm.edu	36	17	4800876	4800876	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	4800876	4800876	G	A	SNP	ENO3	NM_001976	human	genbank	54_36p	1	reviewed	silent	c.1203	p.S401	0.31	"superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C"	"HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like,superfamily_Enolase C-terminal domain-like,HMMPfam_Enolase_C,PatternScan_ENOLASE"	-	no_errors
ERBB2	2064	hgsc.bcm.edu	36	17	35121734	35121734	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	35121734	35121734	C	T	SNP	ERBB2	NM_004448	human	genbank	54_36p	1	reviewed	missense	c.929	p.S310F	1	"superfamily_Growth factor receptor domain,HMMPfam_Furin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ERBB2	2064	hgsc.bcm.edu	36	17	35134658	35134658	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	35134658	35134658	G	T	SNP	ERBB2	NM_004448	human	genbank	54_36p	1	reviewed	missense	c.2461	p.D821Y	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
ERBB2	2064	hgsc.bcm.edu	36	17	35135143	35135143	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	35135143	35135143	G	A	SNP	ERBB2	NM_004448	human	genbank	54_36p	1	reviewed	missense	c.2687	p.R896H	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
EVI2B	2124	hgsc.bcm.edu	36	17	26656494	26656494	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	26656494	26656494	G	A	SNP	EVI2B	NM_006495	human	genbank	54_36p	-1	validated	missense	c.260	p.T87I	0	NULL	NULL	-	no_errors
EVPL	2125	hgsc.bcm.edu	36	17	71515272	71515273	+	Frame_Shift_Ins	INS	-	-	CC	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	71515272	71515273	-	CC	INS	EVPL	NM_001988	human	genbank	54_36p	-1	validated	frame_shift_ins	c.5609_5608	p.D1870fs	1.000:1.000	"superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	"superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin"	-	no_errors
EZH1	2145	hgsc.bcm.edu	36	17	38108439	38108439	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	38108439	38108439	T	A	SNP	EZH1	NM_001991	human	genbank	54_36p	-1	validated	missense	c.2165	p.E722V	1	"superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	"HMMSmart_SM00717,PatternScan_AP_NUCLEASE_F2_1,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
FBF1	85302	hgsc.bcm.edu	36	17	71434554	71434554	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	71434554	71434554	C	G	SNP	FBF1	NM_001080542	human	genbank	54_36p	-1	provisional	splice_site	c.434-1	e8-1	0.62	-	-	-	no_errors
FBXL20	84961	hgsc.bcm.edu	36	17	34678605	34678605	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	34678605	34678605	C	T	SNP	FBXL20	NM_032875	human	genbank	54_36p	-1	provisional	splice_site	c.933+1	e12+1	1	-	-	-	no_errors
FBXO47	494188	hgsc.bcm.edu	36	17	34354744	34354744	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	34354744	34354744	T	A	SNP	FBXO47	NM_001008777	human	genbank	54_36p	-1	validated	missense	c.788	p.Q263L	0.88	NULL	HMMPfam_F-box	-	no_errors
FTSJ3	117246	hgsc.bcm.edu	36	17	59257684	59257684	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	59257684	59257684	C	A	SNP	FTSJ3	NM_017647	human	genbank	54_36p	-1	reviewed	missense	c.148	p.D50Y	1	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_FtsJ"	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_FtsJ,HMMPfam_Spb1_C"	-	no_errors
GEMIN4	50628	hgsc.bcm.edu	36	17	596827	596827	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	596827	596827	G	A	SNP	GEMIN4	NM_015721	human	genbank	54_36p	-1	reviewed	silent	c.1206	p.I402	0.2	NULL	NULL	-	no_errors
GGA3	23163	hgsc.bcm.edu	36	17	70747108	70747108	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	70747108	70747108	T	A	SNP	GGA3	NM_138619	human	genbank	54_36p	-1	reviewed	nonsense	c.1723	p.K575*	0	NULL	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,superfamily_GAT-like domain,HMMPfam_GAT,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809"	-	no_errors
GGA3	23163	hgsc.bcm.edu	36	17	70748031	70748031	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	70748031	70748031	C	T	SNP	GGA3	NM_138619	human	genbank	54_36p	-1	reviewed	nonsense	c.1250	p.W417*	1	NULL	"HMMPfam_VHS,HMMPfam_GAT,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_ENTH/VHS domain,superfamily_Clathrin adaptor appendage domain,HMMSmart_SM00288,superfamily_GAT-like domain"	-	no_errors
GPATCH8	23131	hgsc.bcm.edu	36	17	39831700	39831700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	39831700	39831700	T	C	SNP	GPATCH8	NM_001002909	human	genbank	54_36p	-1	validated	missense	c.3271	p.K1091E	1	NULL	"HMMSmart_SM00443,HMMPfam_G-patch,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GPATCH8	23131	hgsc.bcm.edu	36	17	39834010	39834010	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	39834010	39834010	C	T	SNP	GPATCH8	NM_001002909	human	genbank	54_36p	-1	validated	missense	c.961	p.D321N	1	NULL	"HMMPfam_G-patch,HMMSmart_SM00443,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GRB2	2885	hgsc.bcm.edu	36	17	70828143	70828143	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	70828143	70828143	G	A	SNP	GRB2	NM_002086	human	genbank	54_36p	-1	reviewed	silent	c.555	p.V185	1	"superfamily_SH2 domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
GRB2	2885	hgsc.bcm.edu	36	17	70901278	70901278	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	70901278	70901278	G	T	SNP	GRB2	NM_002086	human	genbank	54_36p	-1	reviewed	missense	c.27	p.F9L	1	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	"HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain"	-	no_errors
GRIN2C	2905	hgsc.bcm.edu	36	17	70357608	70357608	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	70357608	70357608	G	A	SNP	GRIN2C	NM_000835	human	genbank	54_36p	-1	reviewed	silent	c.1551	p.S517	0.05	"superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GSDMB	55876	hgsc.bcm.edu	36	17	35316761	35316761	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	35316761	35316761	C	A	SNP	GSDMB	NM_001042471	human	genbank	54_36p	-1	validated	missense	c.667	p.D223Y	0	HMMPfam_Gasdermin	HMMPfam_Gasdermin	-	no_errors
GSG2	83903	hgsc.bcm.edu	36	17	3574813	3574814	+	Frame_Shift_Ins	INS	-	-	TG	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	3574813	3574814	-	TG	INS	GSG2	NM_031965	human	genbank	54_36p	1	validated	frame_shift_ins	c.835_836	p.N279fs	0.000:0.000	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
GSG2	83903	hgsc.bcm.edu	36	17	3575170	3575171	+	Frame_Shift_Ins	INS	-	-	AA	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	3575170	3575171	-	AA	INS	GSG2	NM_031965	human	genbank	54_36p	1	validated	frame_shift_ins	c.1192_1193	p.D398fs	0.000:0.000	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
H3F3B	3021	hgsc.bcm.edu	36	17	71286798	71286799	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	71286798	71286799	-	G	INS	H3F3B	NM_005324	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.53_52	p.R18fs	1.000:0.999	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HLF	3131	hgsc.bcm.edu	36	17	50753035	50753035	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	50753035	50753035	C	T	SNP	HLF	NM_002126	human	genbank	54_36p	1	reviewed	silent	c.684	p.Y228	1	"HMMSmart_SM00338,HMMPfam_bZIP_2"	"HMMSmart_SM00338,HMMPfam_bZIP_2"	-	no_errors
HNF1B	6928	hgsc.bcm.edu	36	17	33165699	33165699	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	33165699	33165699	C	A	SNP	HNF1B	NM_000458	human	genbank	54_36p	-1	validated	nonsense	c.1045	p.G349*	1	HMMPfam_HNF-1B_C	"superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C"	-	no_errors
HNF1B	6928	hgsc.bcm.edu	36	17	33167738	33167738	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	33167738	33167738	A	G	SNP	HNF1B	NM_000458	human	genbank	54_36p	-1	validated	missense	c.734	p.I245T	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_HNF-1B_C,HMMPfam_HNF-1_N,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1,superfamily_Dimerization cofactor of HNF-1 alpha"	-	no_errors
HSF5	124535	hgsc.bcm.edu	36	17	53895186	53895186	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	53895186	53895186	A	T	SNP	HSF5	NM_001080439	human	genbank	54_36p	-1	provisional	missense	c.1498	p.S500T	1	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00415,HMMPfam_HSF_DNA-bind"	-	no_errors
ITGA2B	3674	hgsc.bcm.edu	36	17	39808546	39808546	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	39808546	39808546	C	A	SNP	ITGA2B	NM_000419	human	genbank	54_36p	-1	reviewed	missense	c.2666	p.R889L	0.89	"HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ITGA2B	3674	hgsc.bcm.edu	36	17	39808977	39808977	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	39808977	39808977	A	T	SNP	ITGA2B	NM_000419	human	genbank	54_36p	-1	reviewed	splice_site	c.2448+2	e24+2	0.95	-	-	-	no_errors
ITGA2B	3674	hgsc.bcm.edu	36	17	39810591	39810591	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	39810591	39810591	C	T	SNP	ITGA2B	NM_000419	human	genbank	54_36p	-1	reviewed	splice_site	c.2187+1	e21+1	1	-	-	-	no_errors
ITGA3	3675	hgsc.bcm.edu	36	17	45503245	45503245	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	45503245	45503245	T	C	SNP	ITGA3	NM_005501	human	genbank	54_36p	1	reviewed	missense	c.703	p.S235P	0.66	superfamily_Integrin alpha N-terminal domain	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	-	no_errors
JUP	3728	hgsc.bcm.edu	36	17	37173014	37173014	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	37173014	37173014	A	T	SNP	JUP	NM_002230	human	genbank	54_36p	-1	reviewed	missense	c.1244	p.L415H	1	"superfamily_ARM-type_fold,HMMPfam_Arm,HMMSmart_ARM"	"superfamily_ARM-type_fold,HMMSmart_ARM,HMMPfam_HEAT,HMMPfam_Arm"	-	no_errors
KCNJ12	3768	hgsc.bcm.edu	36	17	21260275	21260275	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	21260275	21260275	C	T	SNP	KCNJ12	NM_021012	human	genbank	54_36p	1	validated	missense	c.1028	p.S343L	1	"HMMPfam_IRK,superfamily_Ig_E-set"	"HMMPfam_IRK_N,superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set"	-	no_errors
KCNJ12	3768	hgsc.bcm.edu	36	17	21260275	21260275	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	21260275	21260275	C	T	SNP	KCNJ12	NM_021012	human	genbank	54_36p	1	validated	missense	c.1028	p.S343L	1	"HMMPfam_IRK,superfamily_Ig_E-set"	"HMMPfam_IRK,HMMPfam_IRK_N,superfamily_Ig_E-set,superfamily_SSF81324"	-	no_errors
KIAA0195	9772	hgsc.bcm.edu	36	17	71002621	71002621	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	71002621	71002621	C	G	SNP	KIAA0195	NM_014738	human	genbank	54_36p	1	validated	missense	c.2639	p.S880C	1	NULL	superfamily_Calcium ATPase transmembrane domain M	-	no_errors
KIF2B	84643	hgsc.bcm.edu	36	17	49255721	49255721	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	49255721	49255721	C	T	SNP	KIF2B	NM_032559	human	genbank	54_36p	1	validated	missense	c.328	p.R110C	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
KIF2B	84643	hgsc.bcm.edu	36	17	49257167	49257167	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	49257167	49257167	C	T	SNP	KIF2B	NM_032559	human	genbank	54_36p	1	validated	nonsense	c.1774	p.Q592*	0.03	NULL	"HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF2B	84643	hgsc.bcm.edu	36	17	49257303	49257303	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	49257303	49257303	G	T	SNP	KIF2B	NM_032559	human	genbank	54_36p	1	validated	missense	c.1910	p.C637F	0.97	NULL	"HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF2B	84643	hgsc.bcm.edu	36	17	49257364	49257364	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	49257364	49257364	G	T	SNP	KIF2B	NM_032559	human	genbank	54_36p	1	validated	missense	c.1971	p.K657N	0.17	NULL	"HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KPNB1	3837	hgsc.bcm.edu	36	17	43089426	43089426	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	43089426	43089426	G	C	SNP	KPNB1	NM_002265	human	genbank	54_36p	1	reviewed	splice_site	c.483+1	e4+1	1	-	-	-	no_errors
KRT27	342574	hgsc.bcm.edu	36	17	36189533	36189534	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	36189533	36189534	-	A	INS	KRT27	NM_181537	human	genbank	54_36p	-1	validated	frame_shift_ins	c.791_790	p.Y264fs	1.000:1.000	HMMPfam_Filament	HMMPfam_Filament	-	no_errors
KRT38	8687	hgsc.bcm.edu	36	17	36849119	36849119	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	36849119	36849119	G	C	SNP	KRT38	NM_006771	human	genbank	54_36p	-1	reviewed	silent	c.594	p.S198	0.84	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT9	3857	hgsc.bcm.edu	36	17	36979738	36979738	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	36979738	36979738	G	A	SNP	KRT9	NM_000226	human	genbank	54_36p	-1	reviewed	missense	c.781	p.R261W	0.97	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
MAP2K4	6416	hgsc.bcm.edu	36	17	11925507	11925507	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	11925507	11925507	C	T	SNP	MAP2K4	NM_003010	human	genbank	54_36p	1	reviewed	nonsense	c.328	p.R110*	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MAP3K3	4215	hgsc.bcm.edu	36	17	59122227	59122227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	59122227	59122227	C	A	SNP	MAP3K3	NM_203351	human	genbank	54_36p	1	reviewed	missense	c.1339	p.L447I	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_SSF54277,HMMPfam_PB1,HMMSmart_PB1,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	-	no_errors
MED24	9862	hgsc.bcm.edu	36	17	35436433	35436433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	35436433	35436433	G	A	SNP	MED24	NM_014815	human	genbank	54_36p	-1	reviewed	missense	c.1802	p.S601F	1	NULL	NULL	-	no_errors
METT10D	79066	hgsc.bcm.edu	36	17	2323678	2323678	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	2323678	2323678	A	T	SNP	METT10D	NM_024086	human	genbank	54_36p	-1	validated	missense	c.359	p.L120H	1	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_10"	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_10"	-	no_errors
MFSD11	79157	hgsc.bcm.edu	36	17	72275062	72275062	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	72275062	72275062	G	C	SNP	MFSD11	NM_024311	human	genbank	54_36p	1	provisional	splice_site	c.683-1	e9-1	1	-	-	-	no_errors
MLX	6945	hgsc.bcm.edu	36	17	37974394	37974394	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	37974394	37974394	T	-	DEL	MLX	NM_170607	human	genbank	54_36p	1	reviewed	frame_shift_del	c.345	p.S115fs	0.99	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Bet v1-like"	"(deletion:cds_exon[37974381,37974487])"	no_errors
MMP28	79148	hgsc.bcm.edu	36	17	31119441	31119442	+	Frame_Shift_Ins	INS	-	-	GC	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	31119441	31119442	-	GC	INS	MMP28	ENST00000338839	human	ensembl	54_36p	-1	known	frame_shift_ins	c.918_917	p.D306fs	0.715:0.978	NULL	"superfamily_PGBD-like,HMMPfam_PG_binding_1,superfamily_Metalloproteases (zincins) catalytic domain,HMMSmart_SM00235,HMMPfam_Peptidase_M10,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	-	no_errors
MYH1	4619	hgsc.bcm.edu	36	17	10339305	10339305	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	10339305	10339305	G	T	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.5224	p.Q1742K	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH1	4619	hgsc.bcm.edu	36	17	10340195	10340195	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	10340195	10340195	C	A	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.4966	p.D1656Y	1	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH1	4619	hgsc.bcm.edu	36	17	10352551	10352551	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	10352551	10352551	T	A	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.1751	p.H584L	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH2	4620	hgsc.bcm.edu	36	17	10375771	10375771	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	10375771	10375771	G	A	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	silent	c.2601	p.D867	0.05	NULL	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH2	4620	hgsc.bcm.edu	36	17	10381372	10381372	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	10381372	10381372	G	T	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	missense	c.1800	p.N600K	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH3	4621	hgsc.bcm.edu	36	17	10476613	10476613	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	10476613	10476613	C	A	SNP	MYH3	NM_002470	human	genbank	54_36p	-1	reviewed	missense	c.4861	p.G1621W	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH3	4621	hgsc.bcm.edu	36	17	10476630	10476630	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	10476630	10476630	A	C	SNP	MYH3	NM_002470	human	genbank	54_36p	-1	reviewed	missense	c.4844	p.L1615R	0.86	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH4	4622	hgsc.bcm.edu	36	17	10291142	10291142	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	10291142	10291142	T	A	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	silent	c.5082	p.A1694	0.98	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH4	4622	hgsc.bcm.edu	36	17	10298821	10298821	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	10298821	10298821	G	A	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.2467	p.R823C	1	"HMMSmart_IQ,superfamily_SSF52540"	"HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYO18A	399687	hgsc.bcm.edu	36	17	24443508	24443508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	24443508	24443508	G	C	SNP	MYO18A	NM_078471	human	genbank	54_36p	-1	validated	missense	c.5166	p.D1722E	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin"	-	no_errors
NAGLU	4669	hgsc.bcm.edu	36	17	37944271	37944271	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	37944271	37944271	G	-	DEL	NAGLU	NM_000263	human	genbank	54_36p	1	reviewed	frame_shift_del	c.736	p.A246fs	0.82	HMMPfam_NAGLU	HMMPfam_NAGLU	"(deletion:cds_exon[37944214,37944299])"	no_errors
NARF	26502	hgsc.bcm.edu	36	17	78039282	78039283	+	Frame_Shift_Ins	INS	-	-	GA	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	78039282	78039283	-	GA	INS	NARF	NM_012336	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1331_1332	p.S444fs	0.009:0.000	"superfamily_Fe-only hydrogenase,HMMPfam_Fe_hyd_SSU"	"superfamily_Fe-only hydrogenase,HMMPfam_Fe_hyd_lg_C,HMMPfam_Fe_hyd_SSU"	-	no_errors
NOS2	4843	hgsc.bcm.edu	36	17	23125533	23125533	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	23125533	23125533	G	C	SNP	NOS2	NM_000625	human	genbank	54_36p	-1	reviewed	nonsense	c.1353	p.Y451*	1	"superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase"	###############################################################################################################################################################################################################################################################	-	no_errors
NUP85	79902	hgsc.bcm.edu	36	17	70743280	70743280	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	70743280	70743280	G	C	SNP	NUP85	NM_024844	human	genbank	54_36p	1	reviewed	missense	c.1882	p.E628Q	1	NULL	HMMPfam_Nucleopor_Nup85	-	no_errors
PFAS	5198	hgsc.bcm.edu	36	17	8107262	8107262	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	8107262	8107262	G	C	SNP	PFAS	NM_012393	human	genbank	54_36p	1	reviewed	missense	c.1521	p.K507N	0	"superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C"	"superfamily_PurS-like,superfamily_FGAM synthase PurL linker domain,superfamily_PurM N-terminal domain-like,HMMPfam_AIRS,superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C,superfamily_Class I glutamine amidotransferase-like"	-	no_errors
PFAS	5198	hgsc.bcm.edu	36	17	8111088	8111090	+	In_Frame_Del	DEL	CGG	CGG	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	CGG	CGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	8111088	8111090	CGG	-	DEL	PFAS	NM_012393	human	genbank	54_36p	1	reviewed	in_frame_del	c.2985_2987	p.NG995in_frame_delK	0.295:0.297:0.290	superfamily_PurM C-terminal domain-like	"HMMPfam_AIRS,HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like,superfamily_PurM N-terminal domain-like,superfamily_FGAM synthase PurL linker domain,superfamily_Class I glutamine amidotransferase-like,superfamily_PurS-like"	"(deletion:cds_exon[8111071,8111278])"	no_errors
PGAP3	93210	hgsc.bcm.edu	36	17	35097631	35097631	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	35097631	35097631	T	C	SNP	PERLD1	NM_033419	human	genbank	54_36p	-1	validated	missense	c.163	p.I55V	1	HMMPfam_Per1	HMMPfam_Per1	-	no_errors
PHF12	57649	hgsc.bcm.edu	36	17	24268578	24268578	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	24268578	24268578	T	C	SNP	PHF12	NM_001033561	human	genbank	54_36p	-1	validated	missense	c.985	p.M329V	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SMAD/FHA domain"	-	no_errors
PITPNM3	83394	hgsc.bcm.edu	36	17	6322056	6322056	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	6322056	6322056	G	A	SNP	PITPNM3	NM_031220	human	genbank	54_36p	-1	validated	missense	c.863	p.A288V	1	NULL	"HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
PROCA1	147011	hgsc.bcm.edu	36	17	24055007	24055007	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	24055007	24055007	A	C	SNP	PROCA1	NM_152465	human	genbank	54_36p	-1	provisional	missense	c.707	p.L236W	0.57	NULL	"superfamily_PhospholipaseA2,PatternScan_PA2_HIS"	-	no_errors
PRPSAP1	5635	hgsc.bcm.edu	36	17	71820648	71820648	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	71820648	71820648	C	T	SNP	PRPSAP1	NM_002766	human	genbank	54_36p	-1	validated	silent	c.810	p.E270	1	"superfamily_PRTase-like,HMMPfam_Pribosyltran"	"superfamily_PRTase-like,HMMPfam_Pribosyltran"	-	no_errors
PSMB6	5694	hgsc.bcm.edu	36	17	4648583	4648583	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	4648583	4648583	C	T	SNP	PSMB6	NM_002798	human	genbank	54_36p	1	reviewed	silent	c.628	p.L210	1	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome"	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
RAB37	326624	hgsc.bcm.edu	36	17	70248526	70248526	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	70248526	70248526	G	A	SNP	RAB37	NM_001006638	human	genbank	54_36p	1	validated	missense	c.118	p.V40I	1	"superfamily_SSF52540,HMMPfam_Ras,HMMSmart_RAB"	"superfamily_SSF52540,HMMPfam_Ras,HMMSmart_RAB"	-	no_errors
RABEP1	9135	hgsc.bcm.edu	36	17	5227143	5227143	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	5227143	5227143	G	A	SNP	RABEP1	NM_004703	human	genbank	54_36p	1	validated	silent	c.2490	p.V830	1	NULL	"HMMPfam_Rabaptin,HMMPfam_Rab5-bind"	-	no_errors
RGS9	8787	hgsc.bcm.edu	36	17	60651718	60651718	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	60651718	60651718	G	A	SNP	RGS9	NM_003835	human	genbank	54_36p	1	validated	missense	c.1544	p.R515Q	1	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
RHBDF2	79651	hgsc.bcm.edu	36	17	71980731	71980731	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	71980731	71980731	C	-	DEL	RHBDF2	NM_024599	human	genbank	54_36p	-1	validated	frame_shift_del	c.1948	p.V650fs	0.99	HMMPfam_Rhomboid	HMMPfam_Rhomboid	"(deletion:cds_exon[71980682,71980782])"	no_errors
RHOT1	55288	hgsc.bcm.edu	36	17	27550123	27550123	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	27550123	27550123	C	T	SNP	RHOT1	NM_001033568	human	genbank	54_36p	1	validated	missense	c.914	p.A305V	1	"superfamily_SSF47473,HMMPfam_EF_assoc_2"	"superfamily_SSF52540,HMMPfam_Miro,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_EF_assoc_2,HMMPfam_EF_assoc_1"	-	no_errors
RILP	83547	hgsc.bcm.edu	36	17	1498504	1498504	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	1498504	1498504	C	G	SNP	RILP	NM_031430	human	genbank	54_36p	-1	validated	missense	c.711	p.E237D	0.06	NULL	"PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Jnk-SapK_ap_N"	-	no_errors
RNF157	114804	hgsc.bcm.edu	36	17	71663972	71663972	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	71663972	71663972	T	-	DEL	RNF157	NM_052916	human	genbank	54_36p	-1	validated	frame_shift_del	c.1439	p.E480fs	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"(deletion:cds_exon[71663886,71663997])"	no_errors
RNF213	57674	hgsc.bcm.edu	36	17	75934929	75934929	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	75934929	75934929	G	A	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	silent	c.2418	p.L806	0.02	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RNF213	57674	hgsc.bcm.edu	36	17	75977623	75977623	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	75977623	75977623	G	A	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.9275	p.S3092N	1	NULL	"HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
RPA1	6117	hgsc.bcm.edu	36	17	1733866	1733866	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	1733866	1733866	G	-	DEL	RPA1	NM_002945	human	genbank	54_36p	1	validated	frame_shift_del	c.1252	p.E418fs	1	superfamily_Nucleic acid-binding proteins	"superfamily_Nucleic acid-binding proteins,HMMPfam_Rep-A_N,HMMPfam_tRNA_anti,HMMPfam_Rep_fac-A_C"	"(deletion:cds_exon[1733856,1733988])"	no_errors
RPA1	6117	hgsc.bcm.edu	36	17	1747193	1747194	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	1747193	1747194	-	G	INS	RPA1	NM_002945	human	genbank	54_36p	1	validated	frame_shift_ins	c.1825_1826	p.S609fs	0.965:0.969	superfamily_Nucleic acid-binding proteins	"HMMPfam_tRNA_anti,HMMPfam_Rep-A_N,HMMPfam_Rep_fac-A_C,superfamily_Nucleic acid-binding proteins"	-	no_errors
RPTOR	57521	hgsc.bcm.edu	36	17	76342410	76342411	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	76342410	76342411	-	G	INS	KIAA1303	NM_020761	human	genbank	54_36p	1	validated	frame_shift_ins	c.660_661	p.A220fs	0.637:0.991	NULL	"superfamily_ARM repeat,HMMPfam_HEAT,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
RUNDC3A	10900	hgsc.bcm.edu	36	17	39747660	39747660	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	39747660	39747660	C	T	SNP	RUNDC3A	NM_006695	human	genbank	54_36p	1	validated	missense	c.490	p.R164W	0.98	"HMMPfam_RUN,HMMSmart_RUN"	"HMMPfam_RUN,HMMSmart_RUN"	-	no_errors
SCN4A	6329	hgsc.bcm.edu	36	17	59376564	59376564	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	59376564	59376564	A	T	SNP	SCN4A	NM_000334	human	genbank	54_36p	-1	reviewed	missense	c.3608	p.V1203D	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ"	-	no_errors
SCN4A	6329	hgsc.bcm.edu	36	17	59388340	59388340	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	59388340	59388340	C	T	SNP	SCN4A	NM_000334	human	genbank	54_36p	-1	reviewed	missense	c.2290	p.E764K	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SEC14L1	6397	hgsc.bcm.edu	36	17	72702455	72702455	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	72702455	72702455	A	G	SNP	SEC14L1	NM_001039573	human	genbank	54_36p	1	reviewed	silent	c.576	p.T192	0	NULL	"HMMPfam_PRELI,superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_CRAL_TRIO,superfamily_Supernatant protein factor (SPF) C-terminal domain"	-	no_errors
SGSM2	9905	hgsc.bcm.edu	36	17	2213626	2213627	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	2213626	2213627	CA	-	DEL	SGSM2	NM_014853	human	genbank	54_36p	1	validated	frame_shift_del	c.790_791	p.H264fs	1.000:1.000	NULL	"HMMPfam_RUN,HMMSmart_RUN,superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC"	"(deletion:cds_exon[2213509,2213643])"	no_errors
SLC16A13	201232	hgsc.bcm.edu	36	17	6882348	6882348	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	6882348	6882348	A	T	SNP	SLC16A13	NM_201566	human	genbank	54_36p	1	validated	missense	c.497	p.Y166F	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC4A1	6521	hgsc.bcm.edu	36	17	39686139	39686139	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	39686139	39686139	G	A	SNP	SLC4A1	NM_000342	human	genbank	54_36p	-1	reviewed	silent	c.2184	p.T728	0.39	HMMPfam_HCO3_cotransp	"superfamily_PTrfase/Anion_transptr,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2"	-	no_errors
SLC5A10	125206	hgsc.bcm.edu	36	17	18813098	18813099	+	In_Frame_Ins	INS	-	-	TAC	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	18813098	18813099	-	TAC	INS	SLC5A10	NM_152351	human	genbank	54_36p	1	validated	in_frame_ins	c.462_463	p.155in_frame_insY	1.000:1.000	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
SLC5A10	125206	hgsc.bcm.edu	36	17	18857504	18857504	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	18857504	18857504	G	A	SNP	SLC5A10	NM_152351	human	genbank	54_36p	1	validated	missense	c.1087	p.G363S	1	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
SLFN11	91607	hgsc.bcm.edu	36	17	30704004	30704004	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	30704004	30704004	T	A	SNP	SLFN11	NM_001104587	human	genbank	54_36p	-1	validated	silent	c.2190	p.I730	0.2	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SLFN13	146857	hgsc.bcm.edu	36	17	30793372	30793373	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	30793372	30793373	-	T	INS	SLFN13	NM_144682	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1245_1244	p.L416fs	0.519:0.537	NULL	"HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SLFN13	146857	hgsc.bcm.edu	36	17	30793377	30793377	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	30793377	30793377	T	A	SNP	SLFN13	NM_144682	human	genbank	54_36p	-1	validated	nonsense	c.1240	p.K414*	0.49	NULL	"HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SLFN5	162394	hgsc.bcm.edu	36	17	30615640	30615640	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	30615640	30615640	A	T	SNP	SLFN5	NM_144975	human	genbank	54_36p	1	validated	missense	c.1464	p.L488F	0.04	NULL	"HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SMG6	23293	hgsc.bcm.edu	36	17	2149950	2149950	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	2149950	2149950	G	A	SNP	SMG6	NM_017575	human	genbank	54_36p	-1	validated	nonsense	c.847	p.Q283*	0.99	NULL	"HMMPfam_EST1,superfamily_PIN domain-like,HMMSmart_SM00670"	-	no_errors
SMG6	23293	hgsc.bcm.edu	36	17	2149950	2149950	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	2149950	2149950	G	A	SNP	SMG6	NM_017575	human	genbank	54_36p	-1	validated	nonsense	c.847	p.Q283*	0.99	NULL	"HMMSmart_SM00670,HMMPfam_EST1,superfamily_PIN domain-like"	-	no_errors
SMYD4	114826	hgsc.bcm.edu	36	17	1631355	1631355	+	Missense_Mutation	SNP	G	G	T	rs58337165	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	1631355	1631355	G	T	SNP	SMYD4	NM_052928	human	genbank	54_36p	-1	validated	missense	c.2390	p.P797H	0	NULL	"superfamily_TPR-like,superfamily_SET domain,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1"	-	no_errors
SPAG5	10615	hgsc.bcm.edu	36	17	23942909	23942909	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	23942909	23942909	G	T	SNP	SPAG5	NM_006461	human	genbank	54_36p	-1	reviewed	missense	c.1371	p.S457R	0	NULL	NULL	-	no_errors
SPDYE4	388333	hgsc.bcm.edu	36	17	8602399	8602407	+	In_Frame_Del	DEL	CGGGGGGCG	CGGGGGGCG	-	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	CGGGGGGCG	CGGGGGGCG	CGGGGGGCG	-	CGGGGGGCG	CGGGGGGCG	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	8602399	8602407	CGGGGGGCG	-	DEL	SPDYE4	ENST00000328794	human	ensembl	54_36p	-1	known	in_frame_del	c.45_37	p.RPP13in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	"(deletion:cds_exon[8602317,8602443])"	no_start_codon
SPOP	8405	hgsc.bcm.edu	36	17	45039703	45039703	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	45039703	45039703	C	A	SNP	SPOP	NM_001007226	human	genbank	54_36p	-1	reviewed	nonsense	c.745	p.E249*	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
SUPT6H	6830	hgsc.bcm.edu	36	17	24036018	24036018	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	24036018	24036018	A	G	SNP	SUPT6H	NM_003170	human	genbank	54_36p	1	validated	missense	c.2399	p.N800S	1	HMMSmart_SM00732	"HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316,HMMPfam_S1,superfamily_SH2 domain,HMMSmart_SM00252"	-	no_errors
TANC2	26115	hgsc.bcm.edu	36	17	58669167	58669167	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	58669167	58669167	G	A	SNP	TANC2	NM_025185	human	genbank	54_36p	1	validated	missense	c.808	p.A270T	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
TBCD	6904	hgsc.bcm.edu	36	17	78457104	78457104	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	78457104	78457104	T	C	SNP	TBCD	NM_005993	human	genbank	54_36p	1	reviewed	missense	c.1808	p.F603S	0.13	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
TBCD	6904	hgsc.bcm.edu	36	17	78483848	78483848	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	78483848	78483848	C	G	SNP	TBCD	NM_005993	human	genbank	54_36p	1	reviewed	missense	c.3139	p.L1047V	1	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
TBX4	9496	hgsc.bcm.edu	36	17	56915159	56915159	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	56915159	56915159	C	T	SNP	TBX4	NM_018488	human	genbank	54_36p	1	reviewed	missense	c.1138	p.P380S	1	NULL	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TBX4	9496	hgsc.bcm.edu	36	17	56915244	56915244	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	56915244	56915244	A	G	SNP	TBX4	NM_018488	human	genbank	54_36p	1	reviewed	missense	c.1223	p.D408G	1	NULL	"HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1"	-	no_errors
TEKT1	83659	hgsc.bcm.edu	36	17	6663236	6663236	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	6663236	6663236	C	A	SNP	TEKT1	NM_053285	human	genbank	54_36p	-1	reviewed	missense	c.356	p.R119M	1	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
TEKT3	64518	hgsc.bcm.edu	36	17	15175183	15175183	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	15175183	15175183	G	A	SNP	TEKT3	NM_031898	human	genbank	54_36p	-1	reviewed	missense	c.445	p.R149C	1	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
TEX14	56155	hgsc.bcm.edu	36	17	53993928	53993928	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	53993928	53993928	G	A	SNP	TEX14	NM_198393	human	genbank	54_36p	-1	reviewed	missense	c.4229	p.P1410L	0.87	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr"	-	no_errors
TEX14	56155	hgsc.bcm.edu	36	17	54054028	54054028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	54054028	54054028	C	T	SNP	TEX14	NM_198393	human	genbank	54_36p	-1	reviewed	missense	c.536	p.C179Y	0.99	NULL	"HMMPfam_Pkinase_Tyr,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_Kinase_like"	-	no_errors
TEX2	55852	hgsc.bcm.edu	36	17	59619296	59619296	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	59619296	59619296	C	G	SNP	TEX2	NM_018469	human	genbank	54_36p	-1	validated	silent	c.2409	p.L803	0.89	NULL	"PatternScan_PTS_HPR_SER,HMMSmart_PH,HMMPfam_DUF2404"	-	no_errors
TM4SF5	9032	hgsc.bcm.edu	36	17	4632568	4632568	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	4632568	4632568	G	A	SNP	TM4SF5	NM_003963	human	genbank	54_36p	1	reviewed	silent	c.282	p.S94	0.19	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
TNS4	84951	hgsc.bcm.edu	36	17	35892141	35892142	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	35892141	35892142	-	T	INS	TNS4	NM_032865	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1555_1554	p.G518fs	1.000:1.000	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMPfam_PTB"	-	no_errors
TOB1	10140	hgsc.bcm.edu	36	17	46296048	46296049	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	46296048	46296049	-	A	INS	TOB1	NM_005749	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.330_329	p.K110fs	1.000:1.000	HMMPfam_BTG	"HMMSmart_SM00099,HMMPfam_BTG,PatternScan_BTG_1,PatternScan_BTG_2"	-	no_errors
TRIM65	201292	hgsc.bcm.edu	36	17	71398629	71398629	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	71398629	71398629	G	-	DEL	TRIM65	NM_173547	human	genbank	54_36p	-1	validated	frame_shift_del	c.1380	p.C461fs	0.95	"HMMPfam_SPRY,HMMSmart_SM00449"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449"	"(deletion:cds_exon[71398455,71399023])"	no_errors
TRPV3	162514	hgsc.bcm.edu	36	17	3374364	3374364	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	3374364	3374364	A	G	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	silent	c.1621	p.L541	1	HMMPfam_Ion_trans	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
USP22	23326	hgsc.bcm.edu	36	17	20855138	20855139	+	Frame_Shift_Del	DEL	GG	GG	-	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	20855138	20855139	GG	-	DEL	USP22	NM_015276	human	genbank	54_36p	-1	validated	frame_shift_del	c.1021_1020	p.L341fs	1.000:0.859	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	"(deletion:cds_exon[20855056,20855214])"	no_errors
USP36	57602	hgsc.bcm.edu	36	17	74310144	74310149	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	TTTTTC	TTTTTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	74310144	74310149	TTTTTC	-	DEL	USP36	NM_025090	human	genbank	54_36p	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.331:0.331:0.310:0.343:0.348:0.354	NULL	"superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC"	"(deletion:cds_exon[74310001,74310212])"	no_errors
USP6	9098	hgsc.bcm.edu	36	17	4977965	4977965	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	4977965	4977965	G	A	SNP	USP6	NM_004505	human	genbank	54_36p	1	validated	silent	c.444	p.V148	0.99	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
WSCD1	23302	hgsc.bcm.edu	36	17	5934489	5934491	+	In_Frame_Del	DEL	GGG	GGG	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	GGG	GGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	5934489	5934491	GGG	-	DEL	WSCD1	NM_015253	human	genbank	54_36p	1	validated	in_frame_del	c.667_669	p.G223in_frame_del	1.000:1.000:0.993	"HMMSmart_WSC,HMMPfam_WSC"	"HMMSmart_WSC,HMMPfam_WSC,superfamily_SSF52540"	"(deletion:cds_exon[5934365,5934549])"	no_errors
ZBTB4	57659	hgsc.bcm.edu	36	17	7310833	7310834	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	17	7310833	7310834	-	G	INS	ZBTB4	NM_020899	human	genbank	54_36p	-1	validated	frame_shift_ins	c.12_11	p.A5fs	0.976:0.990	superfamily_POZ domain	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF286A	57335	hgsc.bcm.edu	36	17	15552269	15552269	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	15552269	15552269	C	T	SNP	ZNF286A	NM_020652	human	genbank	54_36p	1	validated	missense	c.317	p.P106L	0.01	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ALPK2	115701	hgsc.bcm.edu	36	18	54342170	54342170	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	18	54342170	54342170	G	A	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	missense	c.5606	p.A1869V	1	"superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Protein kinase-like (PK-like)"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase"	-	no_errors
ALPK2	115701	hgsc.bcm.edu	36	18	54397446	54397446	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	54397446	54397446	C	T	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	silent	c.1542	p.T514	0	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
ANKRD12	23253	hgsc.bcm.edu	36	18	9245224	9245224	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	9245224	9245224	T	C	SNP	ANKRD12	NM_015208	human	genbank	54_36p	1	validated	silent	c.1959	p.H653	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
ASXL3	80816	hgsc.bcm.edu	36	18	29578248	29578248	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	29578248	29578248	A	T	SNP	ASXL3	NM_030632	human	genbank	54_36p	1	validated	missense	c.4438	p.T1480S	1	NULL	NULL	-	no_errors
ASXL3	80816	hgsc.bcm.edu	36	18	29579797	29579798	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	29579797	29579798	-	G	INS	ASXL3	NM_030632	human	genbank	54_36p	1	validated	frame_shift_ins	c.5987_5988	p.K1997fs	0.524:0.456	NULL	NULL	-	no_errors
ATP8B1	5205	hgsc.bcm.edu	36	18	53472236	53472236	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	18	53472236	53472236	C	A	SNP	ATP8B1	NM_005603	human	genbank	54_36p	-1	reviewed	missense	c.3001	p.G1001W	1	superfamily_SSF81665	"superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660"	-	no_errors
ATP9B	374868	hgsc.bcm.edu	36	18	75198300	75198300	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	75198300	75198300	G	A	SNP	ATP9B	NM_198531	human	genbank	54_36p	1	validated	missense	c.2146	p.D716N	0.99	"superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
C18orf1	753	hgsc.bcm.edu	36	18	13611197	13611197	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	18	13611197	13611197	A	G	SNP	C18orf1	NM_181481	human	genbank	54_36p	1	validated	missense	c.263	p.H88R	1	NULL	"superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
C18orf34	374864	hgsc.bcm.edu	36	18	29157491	29157491	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	29157491	29157491	C	A	SNP	C18orf34	NM_001105528	human	genbank	54_36p	-1	validated	missense	c.984	p.K328N	0	NULL	NULL	-	no_errors
FAM69C	125704	hgsc.bcm.edu	36	18	70254717	70254717	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	70254717	70254717	T	-	DEL	C18orf51	NM_001044369	human	genbank	54_36p	-1	validated	frame_shift_del	c.362	p.*121fs	0.25	NULL	NULL	"(deletion:cds_exon[70254716,70254934])"	no_errors
CABLES1	91768	hgsc.bcm.edu	36	18	19087758	19087758	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	19087758	19087758	G	A	SNP	CABLES1	NM_001100619	human	genbank	54_36p	1	validated	missense	c.1621	p.A541T	1	superfamily_Cyclin-like	superfamily_Cyclin-like	-	no_errors
CDH7	1005	hgsc.bcm.edu	36	18	61678026	61678034	+	In_Frame_Del	DEL	TTGAAAGAT	TTGAAAGAT	-	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	TTGAAAGAT	TTGAAAGAT	-	-	TTGAAAGAT	TTGAAAGAT	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	18	61678026	61678034	TTGAAAGAT	-	DEL	CDH7	NM_004361	human	genbank	54_36p	1	reviewed	in_frame_del	c.1597_1605	p.LKD533in_frame_del	0.022:0.859:0.862:0.986:0.994:0.992:1.000:1.000:0.981	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	"(deletion:cds_exon[61677924,61678041])"	no_errors
CETN1	1068	hgsc.bcm.edu	36	18	570475	570475	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	570475	570475	C	-	DEL	CETN1	NM_004066	human	genbank	54_36p	1	reviewed	frame_shift_del	c.67	p.E24fs	1	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,PatternScan_DEAD_ATP_HELICASE"	"(deletion:cds_exon[570409,570927])"	no_errors
CLUL1	27098	hgsc.bcm.edu	36	18	634982	634982	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	634982	634982	C	A	SNP	CLUL1	NM_014410	human	genbank	54_36p	1	validated	missense	c.1282	p.P428T	0.99	"HMMPfam_Clusterin,HMMSmart_CLa"	"HMMPfam_Clusterin,HMMSmart_CLb,HMMSmart_CLa"	-	no_errors
DCC	1630	hgsc.bcm.edu	36	18	48959483	48959483	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	18	48959483	48959483	G	C	SNP	DCC	NM_005215	human	genbank	54_36p	1	validated	missense	c.1572	p.E524D	1	superfamily_Fibronectin type III	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C"	-	no_errors
DCC	1630	hgsc.bcm.edu	36	18	48988184	48988184	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	18	48988184	48988184	C	T	SNP	DCC	NM_005215	human	genbank	54_36p	1	validated	silent	c.1860	p.D620	1	superfamily_Fibronectin type III	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_Neogenin_C,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
DSC3	1825	hgsc.bcm.edu	36	18	26835613	26835613	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	26835613	26835613	G	A	SNP	DSC3	NM_001941	human	genbank	54_36p	-1	reviewed	missense	c.2204	p.S735L	1	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DSEL	92126	hgsc.bcm.edu	36	18	63332454	63332454	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	63332454	63332454	A	G	SNP	DSEL	NM_032160	human	genbank	54_36p	-1	validated	silent	c.402	p.N134	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EPB41L3	23136	hgsc.bcm.edu	36	18	5406037	5406037	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	18	5406037	5406037	A	T	SNP	EPB41L3	NM_012307	human	genbank	54_36p	-1	provisional	missense	c.1847	p.L616H	1	NULL	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD"	-	no_errors
FAM59A	64762	hgsc.bcm.edu	36	18	28120994	28120994	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	28120994	28120994	C	G	SNP	FAM59A	NM_022751	human	genbank	54_36p	-1	predicted	missense	c.1564	p.A522P	1	NULL	"superfamily_SAM_homology,HMMPfam_SAM_1"	-	no_errors
GALNT1	2589	hgsc.bcm.edu	36	18	31521018	31521018	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	31521018	31521018	G	A	SNP	GALNT1	NM_020474	human	genbank	54_36p	1	reviewed	missense	c.730	p.D244N	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
KCTD1	284252	hgsc.bcm.edu	36	18	22293730	22293730	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	22293730	22293730	G	A	SNP	KCTD1	NM_198991	human	genbank	54_36p	-1	validated	missense	c.467	p.T156M	1	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	-	no_errors
KIAA0427	9811	hgsc.bcm.edu	36	18	44541794	44541794	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	18	44541794	44541794	G	C	SNP	KIAA0427	NM_014772	human	genbank	54_36p	1	validated	missense	c.1107	p.Q369H	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543"	-	no_errors
KIAA1632	57724	hgsc.bcm.edu	36	18	41750070	41750070	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	41750070	41750070	C	G	SNP	KIAA1632	NM_020964	human	genbank	54_36p	-1	validated	missense	c.3484	p.E1162Q	1	NULL	NULL	-	no_errors
LAMA1	284217	hgsc.bcm.edu	36	18	6961901	6961901	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	6961901	6961901	C	G	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.6854	p.W2285S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA1	284217	hgsc.bcm.edu	36	18	6976307	6976307	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	6976307	6976307	G	A	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	silent	c.5208	p.Y1736	0	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA1	284217	hgsc.bcm.edu	36	18	6989480	6989480	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	18	6989480	6989480	C	A	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	nonsense	c.4627	p.E1543*	0.86	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
MAPRE2	10982	hgsc.bcm.edu	36	18	30904249	30904249	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	30904249	30904249	C	A	SNP	MAPRE2	NM_014268	human	genbank	54_36p	1	reviewed	missense	c.215	p.S72Y	1	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMPfam_EB1"	-	no_errors
MC2R	4158	hgsc.bcm.edu	36	18	13874979	13874979	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	13874979	13874979	G	A	SNP	MC2R	NM_000529	human	genbank	54_36p	-1	reviewed	missense	c.539	p.S180L	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MEP1B	4225	hgsc.bcm.edu	36	18	28049142	28049142	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	28049142	28049142	G	C	SNP	MEP1B	NM_005925	human	genbank	54_36p	1	validated	missense	c.1679	p.S560T	0.47	"superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
MIB1	57534	hgsc.bcm.edu	36	18	17632062	17632062	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	17632062	17632062	G	A	SNP	MIB1	NM_020774	human	genbank	54_36p	1	validated	missense	c.1112	p.R371Q	1	NULL	"PatternScan_ZF_RING_1,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
MPPE1	65258	hgsc.bcm.edu	36	18	11876921	11876921	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	11876921	11876921	G	A	SNP	MPPE1	NM_023075	human	genbank	54_36p	-1	validated	nonsense	c.673	p.R225*	0.97	"superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos"	"superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos,PatternScan_HEMOPEXIN"	-	no_errors
NDC80	10403	hgsc.bcm.edu	36	18	2606527	2606527	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	18	2606527	2606527	A	-	DEL	NDC80	NM_006101	human	genbank	54_36p	1	validated	frame_shift_del	c.1883	p.D628fs	1	NULL	HMMPfam_Ndc80_HEC	"(deletion:cds_exon[2606436,2606573])"	no_errors
NEDD4L	23327	hgsc.bcm.edu	36	18	54063704	54063704	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	54063704	54063704	C	A	SNP	NEDD4L	NM_015277	human	genbank	54_36p	1	validated	missense	c.188	p.T63K	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
PHLPP1	23239	hgsc.bcm.edu	36	18	58776856	58776856	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	18	58776856	58776856	C	A	SNP	PHLPP	NM_194449	human	genbank	54_36p	1	validated	missense	c.1803	p.S601R	1	superfamily_L domain-like	"HMMPfam_PH,superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C"	-	no_errors
PIAS2	9063	hgsc.bcm.edu	36	18	42662067	42662067	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	42662067	42662067	C	A	SNP	PIAS2	NM_004671	human	genbank	54_36p	-1	validated	missense	c.1361	p.C454F	1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
PIGN	23556	hgsc.bcm.edu	36	18	57976014	57976014	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	57976014	57976014	T	C	SNP	PIGN	ENST00000357637	human	ensembl	54_36p	-1	known	missense	c.229	p.I77V	0.99	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest,HMMPfam_PigN"	-	no_errors
POLI	11201	hgsc.bcm.edu	36	18	50051770	50051770	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	50051770	50051770	G	C	SNP	POLI	NM_007195	human	genbank	54_36p	1	validated	missense	c.158	p.R53T	1	superfamily_DNA/RNA polymerases	"superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain"	-	no_errors
RTTN	25914	hgsc.bcm.edu	36	18	65946681	65946681	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	18	65946681	65946681	C	A	SNP	RTTN	NM_173630	human	genbank	54_36p	-1	validated	missense	c.3036	p.L1012F	1	NULL	superfamily_ARM repeat	-	no_errors
STARD6	147323	hgsc.bcm.edu	36	18	50117577	50117581	+	Frame_Shift_Del	DEL	TAGTT	TAGTT	-	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	TAGTT	TAGTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	50117577	50117581	TAGTT	-	DEL	STARD6	NM_139171	human	genbank	54_36p	-1	provisional	frame_shift_del	c.183_179	p.K60fs	0.896:0.871:0.633:0.348:0.375	"superfamily_SSF55961,HMMPfam_START,HMMSmart_START"	"superfamily_SSF55961,HMMPfam_START,HMMSmart_START"	"(deletion:cds_exon[50117493,50117619])"	no_errors
TTC39C	125488	hgsc.bcm.edu	36	18	19914798	19914798	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	19914798	19914798	C	T	SNP	TTC39C	NM_153211	human	genbank	54_36p	1	validated	missense	c.529	p.L177F	1	HMMPfam_Deme6	"HMMPfam_Deme6,superfamily_SSF48452"	-	no_errors
TTR	7276	hgsc.bcm.edu	36	18	27429116	27429116	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	27429116	27429116	C	T	SNP	TTR	NM_000371	human	genbank	54_36p	1	reviewed	missense	c.236	p.T79I	0.98	"superfamily_Transthyretin,HMMSmart_TR_THY,HMMPfam_Transthyretin"	"superfamily_Transthyretin,HMMSmart_TR_THY,HMMPfam_Transthyretin,PatternScan_TRANSTHYRETIN_1,PatternScan_TRANSTHYRETIN_2"	-	no_errors
TXNDC2	84203	hgsc.bcm.edu	36	18	9877064	9877064	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	18	9877064	9877064	G	A	SNP	TXNDC2	NM_001098529	human	genbank	54_36p	1	validated	silent	c.588	p.K196	0	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	-	no_errors
VPS4B	9525	hgsc.bcm.edu	36	18	59218825	59218825	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	59218825	59218825	G	C	SNP	VPS4B	NM_004869	human	genbank	54_36p	-1	reviewed	missense	c.576	p.N192K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"HMMSmart_SM00745,HMMPfam_MIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C"	-	no_errors
WDR7	23335	hgsc.bcm.edu	36	18	52754083	52754083	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	18	52754083	52754083	G	A	SNP	WDR7	NM_015285	human	genbank	54_36p	1	reviewed	silent	c.3780	p.S1260	0.25	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,superfamily_WD40 repeat-like"	-	no_errors
ZBTB7C	201501	hgsc.bcm.edu	36	18	43821394	43821394	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	43821394	43821394	C	T	SNP	ZBTB7C	NM_001039360	human	genbank	54_36p	-1	validated	missense	c.83	p.R28Q	1	"superfamily_POZ domain,HMMPfam_BTB"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2"	-	no_errors
ZNF407	55628	hgsc.bcm.edu	36	18	70472001	70472001	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	18	70472001	70472001	A	G	SNP	ZNF407	NM_017757	human	genbank	54_36p	1	provisional	missense	c.38	p.D13G	0.89	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00451,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
MARCH2	51257	hgsc.bcm.edu	36	19	8397569	8397569	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	8397569	8397569	A	T	SNP	03/02/10	NM_001005415	human	genbank	54_36p	1	validated	missense	c.253	p.T85S	1	"superfamily_SSF57850,HMMSmart_RINGv,HMMPfam_zf-C3HC4"	"superfamily_SSF57850,HMMSmart_RINGv,HMMPfam_zf-C3HC4"	-	no_errors
AKAP8	10270	hgsc.bcm.edu	36	19	15330826	15330826	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	15330826	15330826	A	C	SNP	AKAP8	NM_005858	human	genbank	54_36p	-1	reviewed	missense	c.1575	p.S525R	1	HMMPfam_AKAP95	"superfamily_SSF56935,HMMSmart_ZnF_C2H2,HMMPfam_AKAP95,HMMPfam_RII_binding_1"	-	no_errors
ANKRD24	170961	hgsc.bcm.edu	36	19	4161079	4161079	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	4161079	4161079	C	-	DEL	ANKRD24	NM_133475	human	genbank	54_36p	1	provisional	frame_shift_del	c.895	p.Q299fs	0.02	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"(deletion:cds_exon[4161055,4161135])"	no_errors
ATP8B3	148229	hgsc.bcm.edu	36	19	1734212	1734212	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	1734212	1734212	G	A	SNP	ATP8B3	NM_138813	human	genbank	54_36p	-1	reviewed	missense	c.3718	p.H1240Y	0	NULL	"superfamily_SSF81653,HMMPfam_E1-E2_ATPase,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3,PatternScan_EF_HAND_1"	-	no_errors
AURKC	6795	hgsc.bcm.edu	36	19	62435364	62435364	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	62435364	62435364	C	G	SNP	AURKC	NM_001015878	human	genbank	54_36p	1	reviewed	missense	c.256	p.H86D	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BCAT2	587	hgsc.bcm.edu	36	19	54001784	54001784	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	54001784	54001784	A	-	DEL	BCAT2	NM_001190	human	genbank	54_36p	-1	validated	frame_shift_del	c.102	p.A35fs	0.93	superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes	"superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes,HMMPfam_Aminotran_4,PatternScan_AA_TRANSFER_CLASS_4"	"(deletion:cds_exon[54001586,54001786])"	no_errors
BLOC1S3	388552	hgsc.bcm.edu	36	19	50374977	50374977	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	50374977	50374977	G	-	DEL	BLOC1S3	NM_212550	human	genbank	54_36p	1	reviewed	frame_shift_del	c.583	p.E195fs	0.12	NULL	NULL	"(deletion:cds_exon[50374395,50375003])"	no_errors
BST2	684	hgsc.bcm.edu	36	19	17377374	17377374	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	17377374	17377374	G	A	SNP	BST2	NM_004335	human	genbank	54_36p	-1	reviewed	missense	c.11	p.T4I	0	NULL	NULL	-	no_errors
C19orf18	147685	hgsc.bcm.edu	36	19	63161859	63161859	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	63161859	63161859	G	C	SNP	C19orf18	NM_152474	human	genbank	54_36p	-1	predicted	missense	c.571	p.L191V	0.01	NULL	NULL	-	no_errors
C19orf44	84167	hgsc.bcm.edu	36	19	16481461	16481463	+	In_Frame_Del	DEL	AGC	AGC	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	AGC	AGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	16481461	16481463	AGC	-	DEL	C19orf44	NM_032207	human	genbank	54_36p	1	validated	in_frame_del	c.1301_1303	p.EH434in_frame_delD	0.564:0.538:0.220	NULL	NULL	"(deletion:cds_exon[16481310,16481799])"	no_errors
C19orf47	126526	hgsc.bcm.edu	36	19	45533868	45533868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	45533868	45533868	C	T	SNP	C19orf47	NM_178830	human	genbank	54_36p	-1	predicted	missense	c.121	p.V41M	1	NULL	NULL	-	no_errors
C19orf57	79173	hgsc.bcm.edu	36	19	13862101	13862101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	13862101	13862101	G	T	SNP	C19orf57	NM_024323	human	genbank	54_36p	-1	predicted	missense	c.568	p.Q190K	0.03	NULL	NULL	-	no_errors
C19orf6	91304	hgsc.bcm.edu	36	19	962130	962130	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	962130	962130	T	-	DEL	C19orf6	NM_001033026	human	genbank	54_36p	-1	validated	frame_shift_del	c.1282	p.S428fs	1	NULL	HMMPfam_Membralin	"(deletion:cds_exon[962095,962194])"	no_errors
CACNA1A	773	hgsc.bcm.edu	36	19	13184516	13184521	+	In_Frame_Del	DEL	CGGGGG	CGGGGG	-	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	CGGGGG	CGGGGG	CGGGGG	-	CGGGGG	CGGGGG	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	13184516	13184521	CGGGGG	-	DEL	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	in_frame_del	c.5982_5977	p.PP1993in_frame_del	0.608:0.862:0.862:0.791:0.999:1.000	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	"(deletion:cds_exon[13184445,13184554])"	no_errors
CAPN12	147968	hgsc.bcm.edu	36	19	43926452	43926452	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	43926452	43926452	G	A	SNP	CAPN12	NM_144691	human	genbank	54_36p	-1	validated	missense	c.194	p.P65L	0.8	"superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
CASP14	23581	hgsc.bcm.edu	36	19	15027304	15027304	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	15027304	15027304	T	A	SNP	CASP14	NM_012114	human	genbank	54_36p	1	reviewed	missense	c.584	p.F195Y	0.96	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14"	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_CYS"	-	no_errors
CBLC	23624	hgsc.bcm.edu	36	19	49989347	49989347	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	49989347	49989347	C	T	SNP	CBLC	NM_012116	human	genbank	54_36p	1	validated	missense	c.1331	p.P444L	0.01	NULL	"HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
CCDC123	84902	hgsc.bcm.edu	36	19	38142646	38142646	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	38142646	38142646	C	A	SNP	CCDC123	NM_032816	human	genbank	54_36p	-1	validated	missense	c.305	p.R102L	0.48	NULL	NULL	-	no_errors
CCDC155	147872	hgsc.bcm.edu	36	19	54589629	54589629	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	54589629	54589629	C	T	SNP	CCDC155	NM_144688	human	genbank	54_36p	1	provisional	missense	c.128	p.A43V	1	NULL	NULL	-	no_errors
CD3EAP	10849	hgsc.bcm.edu	36	19	50604020	50604020	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	50604020	50604020	G	A	SNP	CD3EAP	NM_012099	human	genbank	54_36p	1	provisional	silent	c.954	p.L318	0.81	NULL	HMMPfam_RNA_polI_A34	-	no_errors
CD79A	973	hgsc.bcm.edu	36	19	47074976	47074976	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	47074976	47074976	C	T	SNP	CD79A	NM_001783	human	genbank	54_36p	1	reviewed	silent	c.156	p.F52	0.05	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ITAM,HMMSmart_SM00077"	-	no_errors
CEACAM18	729767	hgsc.bcm.edu	36	19	56673604	56673604	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	56673604	56673604	C	T	SNP	CEACAM18	NM_001080405	human	genbank	54_36p	1	provisional	nonsense	c.79	p.R27*	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
CEACAM20	125931	hgsc.bcm.edu	36	19	49707978	49707978	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	49707978	49707978	T	C	SNP	CEACAM20	ENST00000316962	human	ensembl	54_36p	-1	known	splice_site	c.1511-2	e10-2	0.8	-	-	-	no_errors
CEACAM6	4680	hgsc.bcm.edu	36	19	46952499	46952499	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	46952499	46952499	A	G	SNP	CEACAM6	NM_002483	human	genbank	54_36p	1	validated	silent	c.216	p.R72	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
COMP	1311	hgsc.bcm.edu	36	19	18757323	18757324	+	Frame_Shift_Ins	INS	-	-	GA	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	18757323	18757324	-	GA	INS	COMP	NM_000095	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1702_1701	p.P567fs	1.000:1.000	"superfamily_ConA_like_lec_gl,HMMPfam_TSP_C"	"PatternScan_EGF_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_SSF103647,HMMPfam_TSP_3,superfamily_ConA_like_lec_gl,HMMPfam_TSP_C"	-	no_errors
CPAMD8	27151	hgsc.bcm.edu	36	19	16900883	16900884	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	16900883	16900884	-	C	INS	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	frame_shift_ins	c.3154_3153	p.H1051fs	0.972:0.910	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CPAMD8	27151	hgsc.bcm.edu	36	19	16993877	16993877	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	16993877	16993877	C	G	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.348	p.Q116H	1	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
CRLF1	9244	hgsc.bcm.edu	36	19	18568727	18568728	+	Frame_Shift_Del	DEL	CG	CG	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	CG	CG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	18568727	18568728	CG	-	DEL	CRLF1	NM_004750	human	genbank	54_36p	-1	validated	frame_shift_del	c.830_829	p.R277fs	0.992:0.998	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"superfamily_FN_III-like,HMMPfam_EpoR_lig-bind,HMMSmart_FN3,HMMPfam_fn3"	"(deletion:cds_exon[18568702,18568859])"	no_errors
CYP2A7	1549	hgsc.bcm.edu	36	19	46078260	46078260	+	Missense_Mutation	SNP	A	A	C	rs56081734	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	46078260	46078260	A	C	SNP	CYP2A7	NM_000764	human	genbank	54_36p	-1	reviewed	missense	c.457	p.S153A	0	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYTH2	9266	hgsc.bcm.edu	36	19	53669277	53669277	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	53669277	53669277	G	A	SNP	CYTH2	NM_017457	human	genbank	54_36p	1	reviewed	missense	c.574	p.V192I	0.75	"superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222"	"superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
DDX49	54555	hgsc.bcm.edu	36	19	18898162	18898162	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	18898162	18898162	G	T	SNP	DDX49	NM_019070	human	genbank	54_36p	1	provisional	missense	c.1078	p.V360L	1	superfamily_SSF52540	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
DNASE2	1777	hgsc.bcm.edu	36	19	12847912	12847912	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	12847912	12847912	T	G	SNP	DNASE2	NM_001375	human	genbank	54_36p	-1	reviewed	silent	c.975	p.T325	0	HMMPfam_DNase_II	"HMMPfam_DNase_II,PatternScan_AKH"	-	no_errors
DNMT1	1786	hgsc.bcm.edu	36	19	10109608	10109608	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	10109608	10109608	G	A	SNP	DNMT1	NM_001379	human	genbank	54_36p	-1	reviewed	missense	c.4145	p.S1382L	0.82	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"HMMPfam_DMAP_binding,HMMPfam_zf-CXXC,HMMPfam_BAH,HMMSmart_SM00439,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2"	-	no_errors
DOCK6	57572	hgsc.bcm.edu	36	19	11172647	11172647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	11172647	11172647	G	A	SNP	DOCK6	NM_020812	human	genbank	54_36p	-1	validated	missense	c.5770	p.P1924S	1	HMMPfam_Ded_cyto	HMMPfam_Ded_cyto	-	no_errors
DOCK6	57572	hgsc.bcm.edu	36	19	11214933	11214933	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	11214933	11214933	C	A	SNP	DOCK6	NM_020812	human	genbank	54_36p	-1	validated	splice_site	c.1386+1	e12+1	1	-	-	-	no_errors
DPY19L3	147991	hgsc.bcm.edu	36	19	37637701	37637701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	37637701	37637701	G	A	SNP	DPY19L3	NM_207325	human	genbank	54_36p	1	provisional	missense	c.1004	p.G335E	1	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
DPY19L3	147991	hgsc.bcm.edu	36	19	37647510	37647510	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	37647510	37647510	C	G	SNP	DPY19L3	NM_207325	human	genbank	54_36p	1	provisional	missense	c.1594	p.L532V	1	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
ELAVL3	1995	hgsc.bcm.edu	36	19	11430363	11430363	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	11430363	11430363	G	A	SNP	ELAVL3	NM_001420	human	genbank	54_36p	-1	reviewed	missense	c.397	p.P133S	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00361,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
EPS15L1	58513	hgsc.bcm.edu	36	19	16413987	16413987	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	16413987	16413987	A	G	SNP	EPS15L1	NM_021235	human	genbank	54_36p	-1	provisional	splice_site	c.75+2	e2+2	1	-	-	-	no_errors
ERCC2	2068	hgsc.bcm.edu	36	19	50550798	50550798	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	50550798	50550798	G	C	SNP	ERCC2	NM_000400	human	genbank	54_36p	-1	reviewed	missense	c.1508	p.A503G	1	NULL	"superfamily_SSF52540,HMMSmart_DEXDc2,HMMPfam_DEAD_2,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1227,HMMSmart_HELICc2"	-	no_errors
FAM129C	199786	hgsc.bcm.edu	36	19	17505411	17505411	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	17505411	17505411	G	A	SNP	FAM129C	NM_173544	human	genbank	54_36p	1	validated	missense	c.421	p.G141S	0.01	"superfamily_PH domain-like,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
FBN3	84467	hgsc.bcm.edu	36	19	8106925	8106925	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	8106925	8106925	C	A	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	missense	c.1511	p.R504L	1	"PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181"	"HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain"	-	no_errors
FCGBP	8857	hgsc.bcm.edu	36	19	45100661	45100661	+	Missense_Mutation	SNP	C	G	G	rs45613437	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	45100661	45100661	C	G	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.4018	p.V1340L	0	"HMMSmart_VWD,HMMPfam_VWD"	"HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC"	-	no_errors
C19orf75	284369	hgsc.bcm.edu	36	19	56460670	56460670	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	56460670	56460670	A	T	SNP	FLJ40235	NM_173635	human	genbank	54_36p	1	predicted	nonsense	c.259	p.K87*	0.83	NULL	NULL	-	no_errors
FOSB	2354	hgsc.bcm.edu	36	19	50665777	50665777	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	50665777	50665777	C	G	SNP	FOSB	NM_006732	human	genbank	54_36p	1	reviewed	silent	c.177	p.T59	1	NULL	"PatternScan_SUBTILASE_SER,HMMSmart_SM00338,HMMPfam_bZIP_2,PatternScan_BZIP_BASIC"	-	no_errors
FPR1	2357	hgsc.bcm.edu	36	19	56941244	56941244	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	56941244	56941244	C	A	SNP	FPR1	NM_002029	human	genbank	54_36p	-1	validated	missense	c.816	p.L272F	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GADD45B	4616	hgsc.bcm.edu	36	19	2428147	2428148	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	2428147	2428148	-	G	INS	GADD45B	NM_015675	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.267_268	p.V89fs	0.999:1.000	HMMPfam_Ribosomal_L7Ae	HMMPfam_Ribosomal_L7Ae	-	no_errors
GADD45GIP1	90480	hgsc.bcm.edu	36	19	12926326	12926326	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	12926326	12926326	G	T	SNP	GADD45GIP1	NM_052850	human	genbank	54_36p	-1	provisional	missense	c.365	p.A122E	0.1	HMMPfam_CR6_interact	HMMPfam_CR6_interact	-	no_errors
GEMIN7	79760	hgsc.bcm.edu	36	19	50285351	50285351	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	50285351	50285351	G	T	SNP	GEMIN7	NM_001007269	human	genbank	54_36p	1	reviewed	missense	c.139	p.A47S	0	NULL	NULL	-	no_errors
GPR4	2828	hgsc.bcm.edu	36	19	50786000	50786000	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	50786000	50786000	G	T	SNP	GPR4	NM_005282	human	genbank	54_36p	-1	validated	missense	c.965	p.T322N	1	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GRIN2D	2906	hgsc.bcm.edu	36	19	53614307	53614307	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	53614307	53614307	C	T	SNP	GRIN2D	NM_000836	human	genbank	54_36p	1	reviewed	silent	c.1740	p.P580	1	"superfamily_SSF53850,HMMSmart_PBPe"	"superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRLF1	2909	hgsc.bcm.edu	36	19	52114999	52114999	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	52114999	52114999	C	A	SNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	silent	c.1227	p.T409	0	HMMSmart_SM00441	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
GRLF1	2909	hgsc.bcm.edu	36	19	52116700	52116700	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	52116700	52116700	G	A	SNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	silent	c.2928	p.P976	0.11	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GSK3A	2931	hgsc.bcm.edu	36	19	47436052	47436052	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	47436052	47436052	G	C	SNP	GSK3A	NM_019884	human	genbank	54_36p	-1	validated	missense	c.366	p.I122M	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
GYS1	2997	hgsc.bcm.edu	36	19	54177337	54177337	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	54177337	54177337	T	G	SNP	GYS1	NM_002103	human	genbank	54_36p	-1	provisional	missense	c.1049	p.N350T	1	"HMMPfam_Glycogen_syn,superfamily_SSF53756"	"HMMPfam_Glycogen_syn,superfamily_SSF53756"	-	no_errors
HAUS8	93323	hgsc.bcm.edu	36	19	17030444	17030444	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	17030444	17030444	T	-	DEL	HICE1	NM_033417	human	genbank	54_36p	-1	validated	frame_shift_del	c.560	p.K187fs	0	NULL	NULL	"(deletion:cds_exon[17030359,17030517])"	no_errors
ICAM3	3385	hgsc.bcm.edu	36	19	10311218	10311218	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	10311218	10311218	G	A	SNP	ICAM3	NM_002162	human	genbank	54_36p	-1	reviewed	missense	c.73	p.P25S	0.08	HMMPfam_ICAM_N	"HMMPfam_ICAM_N,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
ILF3	3609	hgsc.bcm.edu	36	19	10650296	10650296	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	10650296	10650296	A	G	SNP	ILF3	NM_012218	human	genbank	54_36p	1	reviewed	silent	c.567	p.L189	1	"HMMSmart_SM00572,HMMPfam_DZF"	"HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358"	-	no_errors
ILF3	3609	hgsc.bcm.edu	36	19	10653682	10653683	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	10653682	10653683	-	C	INS	ILF3	NM_012218	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1194_1195	p.Q400fs	0.998:0.999	superfamily_dsRNA-binding domain-like	"HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_DZF,HMMSmart_SM00572,superfamily_dsRNA-binding domain-like"	-	no_errors
ILVBL	10994	hgsc.bcm.edu	36	19	15089699	15089699	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	15089699	15089699	A	T	SNP	ILVBL	NM_006844	human	genbank	54_36p	-1	reviewed	silent	c.1179	p.A393	0.79	"superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_TPP_enzyme_M"	"HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding),superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_TPP_enzyme_M,HMMPfam_TPP_enzyme_C,PatternScan_TPP_ENZYMES"	-	no_errors
IRF3	3661	hgsc.bcm.edu	36	19	54857686	54857686	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	54857686	54857686	C	T	SNP	IRF3	NM_001571	human	genbank	54_36p	-1	validated	missense	c.409	p.E137K	0.06	NULL	"HMMSmart_IRF,superfamily_SSF46785,HMMPfam_IRF,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3"	-	no_errors
KIR2DL4	3805	hgsc.bcm.edu	36	19	60006956	60006956	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	60006956	60006956	T	A	SNP	KIR2DL4	NM_001080770	human	genbank	54_36p	1	reviewed	missense	c.38	p.L13H	0.16	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	-	no_errors
KIR2DL4	3805	hgsc.bcm.edu	36	19	60016487	60016487	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	60016487	60016487	A	-	DEL	KIR2DL4	NM_001080772	human	genbank	54_36p	1	reviewed	frame_shift_del	c.802	p.M271fs	0	NULL	"HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"(deletion:cds_exon[60016392,60016495])"	no_errors
KIR3DL1	3811	hgsc.bcm.edu	36	19	60023022	60023022	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	60023022	60023022	T	A	SNP	KIR3DL1	NM_013289	human	genbank	54_36p	1	reviewed	missense	c.398	p.L133Q	0.01	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	-	no_errors
KIR3DL3	115653	hgsc.bcm.edu	36	19	59931054	59931054	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	59931054	59931054	C	T	SNP	KIR3DL3	NM_153443	human	genbank	54_36p	1	reviewed	missense	c.521	p.A174V	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
KLC3	147700	hgsc.bcm.edu	36	19	50543809	50543809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	50543809	50543809	C	T	SNP	KLC3	NM_177417	human	genbank	54_36p	1	reviewed	missense	c.845	p.T282M	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"HMMPfam_Rab5-bind,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	-	no_errors
KLK10	5655	hgsc.bcm.edu	36	19	56211177	56211177	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	56211177	56211177	C	A	SNP	KLK10	NM_001077500	human	genbank	54_36p	-1	reviewed	missense	c.317	p.G106V	0.83	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases"	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS"	-	no_errors
KLK7	5650	hgsc.bcm.edu	36	19	56172733	56172733	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	56172733	56172733	G	T	SNP	KLK7	NM_005046	human	genbank	54_36p	-1	reviewed	nonsense	c.633	p.C211*	0.99	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases"	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
LAIR1	3903	hgsc.bcm.edu	36	19	59559971	59559971	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	59559971	59559971	A	T	SNP	LAIR1	NM_002287	human	genbank	54_36p	-1	reviewed	missense	c.524	p.L175H	0.03	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
LAIR2	3904	hgsc.bcm.edu	36	19	59711144	59711144	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	59711144	59711144	T	C	SNP	LAIR2	NM_002288	human	genbank	54_36p	1	reviewed	silent	c.297	p.Y99	0	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
LILRB3	11025	hgsc.bcm.edu	36	19	59414824	59414827	+	Frame_Shift_Del	DEL	TTGC	TTGC	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	TTGC	TTGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	59414824	59414827	TTGC	-	DEL	LILRB3	NM_001081450	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1412_1409	p.S470fs	0.002:0.002:0.001:0.000	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"(deletion:cds_exon[59414810,59414926])"	no_errors
MAN2B1	4125	hgsc.bcm.edu	36	19	12636781	12636781	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	12636781	12636781	T	C	SNP	MAN2B1	NM_000528	human	genbank	54_36p	-1	reviewed	missense	c.455	p.N152S	1	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
MAP3K10	4294	hgsc.bcm.edu	36	19	45396137	45396137	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	45396137	45396137	C	A	SNP	MAP3K10	NM_002446	human	genbank	54_36p	1	reviewed	missense	c.698	p.A233D	0.96	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MAP3K10	4294	hgsc.bcm.edu	36	19	45412744	45412744	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	45412744	45412744	G	A	SNP	MAP3K10	NM_002446	human	genbank	54_36p	1	reviewed	missense	c.2570	p.R857H	1	NULL	"HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
MARK4	57787	hgsc.bcm.edu	36	19	50475515	50475515	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	50475515	50475515	G	T	SNP	MARK4	NM_031417	human	genbank	54_36p	1	provisional	missense	c.1050	p.E350D	0.99	"HMMPfam_UBA,HMMSmart_UBA"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_UBA"	-	no_errors
MARK4	57787	hgsc.bcm.edu	36	19	50475785	50475785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	50475785	50475785	G	A	SNP	MARK4	NM_031417	human	genbank	54_36p	1	provisional	missense	c.1229	p.R410Q	1	NULL	"HMMPfam_UBA,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_UBA,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
MAST1	22983	hgsc.bcm.edu	36	19	12823779	12823779	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	12823779	12823779	C	A	SNP	MAST1	NM_014975	human	genbank	54_36p	1	provisional	missense	c.806	p.A269D	1	HMMPfam_DUF1908	"PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
MAST3	23031	hgsc.bcm.edu	36	19	18093499	18093500	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	18093499	18093500	-	G	INS	MAST3	NM_015016	human	genbank	54_36p	1	validated	frame_shift_ins	c.76_77	p.S27fs	1.000:1.000	NULL	"PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
MUC16	94025	hgsc.bcm.edu	36	19	8947715	8947716	+	Frame_Shift_Ins	INS	-	-	ACTCATT	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	8947715	8947716	-	ACTCATT	INS	MUC16	NM_024690	human	genbank	54_36p	-1	validated	frame_shift_ins	c.5100_5099	p.S1701fs	0.005:0.002	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	hgsc.bcm.edu	36	19	8948711	8948711	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	8948711	8948711	A	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.4104	p.P1368	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MYBPC2	4606	hgsc.bcm.edu	36	19	55653730	55653731	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	55653730	55653731	-	C	INS	MYBPC2	NM_004533	human	genbank	54_36p	1	validated	frame_shift_ins	c.2413_2414	p.R806fs	1.000:0.999	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2"	-	no_errors
MYO1F	4542	hgsc.bcm.edu	36	19	8522669	8522669	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	8522669	8522669	G	A	SNP	MYO1F	NM_012335	human	genbank	54_36p	-1	provisional	silent	c.726	p.Y242	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
NCAN	1463	hgsc.bcm.edu	36	19	19195995	19195995	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	19195995	19195995	G	A	SNP	NCAN	NM_004386	human	genbank	54_36p	1	validated	missense	c.641	p.R214H	1	"superfamily_C-type_lectin_fold,HMMSmart_LINK,HMMPfam_Xlink,PatternScan_LINK_1"	###############################################################################################################################################################################################################################################################	-	no_errors
NFKBID	84807	hgsc.bcm.edu	36	19	41073211	41073211	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	41073211	41073211	C	G	SNP	NFKBID	NM_139239	human	genbank	54_36p	-1	provisional	missense	c.628	p.V210L	0.87	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
NLRP12	91662	hgsc.bcm.edu	36	19	59002700	59002700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	59002700	59002700	T	C	SNP	NLRP12	NM_144687	human	genbank	54_36p	-1	reviewed	missense	c.2104	p.S702G	1	superfamily_RNI-like	"HMMPfam_PAAD_DAPIN,superfamily_DEATH domain,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP4	147945	hgsc.bcm.edu	36	19	61061256	61061256	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	61061256	61061256	G	A	SNP	NLRP4	NM_134444	human	genbank	54_36p	1	validated	missense	c.685	p.V229I	0.99	"HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRP8	126205	hgsc.bcm.edu	36	19	61158007	61158007	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	61158007	61158007	C	T	SNP	NLRP8	NM_176811	human	genbank	54_36p	1	provisional	silent	c.771	p.S257	0.85	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT"	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP8	126205	hgsc.bcm.edu	36	19	61182580	61182580	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	61182580	61182580	A	T	SNP	NLRP8	NM_176811	human	genbank	54_36p	1	provisional	missense	c.2885	p.N962I	0	"HMMSmart_SM00368,superfamily_RNI-like"	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NPHS1	4868	hgsc.bcm.edu	36	19	41025145	41025145	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	41025145	41025145	G	A	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	missense	c.2482	p.R828W	0.98	HMMSmart_SM00409	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
NPHS1	4868	hgsc.bcm.edu	36	19	41025228	41025228	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	41025228	41025228	C	T	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	missense	c.2399	p.R800H	0.99	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
NR2C2AP	126382	hgsc.bcm.edu	36	19	19174199	19174199	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	19174199	19174199	C	T	SNP	NR2C2AP	NM_176880	human	genbank	54_36p	-1	validated	missense	c.244	p.G82S	0	superfamily_Gal_bind_like	superfamily_Gal_bind_like	-	no_errors
NWD1	284434	hgsc.bcm.edu	36	19	16731240	16731240	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	16731240	16731240	G	A	SNP	NWD1	NM_001007525	human	genbank	54_36p	1	validated	splice_site	c.1568+1	e3+1	1	-	-	-	no_errors
OR10H1	26539	hgsc.bcm.edu	36	19	15779201	15779201	+	Missense_Mutation	SNP	A	A	G	rs61745520	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	15779201	15779201	A	G	SNP	OR10H1	NM_013940	human	genbank	54_36p	-1	validated	missense	c.647	p.L216P	0.2	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10H1	26539	hgsc.bcm.edu	36	19	15779380	15779380	+	Silent	SNP	C	C	T	rs28426969	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	15779380	15779380	C	T	SNP	OR10H1	NM_013940	human	genbank	54_36p	-1	validated	silent	c.468	p.G156	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR10H2	26538	hgsc.bcm.edu	36	19	15700078	15700078	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	15700078	15700078	G	A	SNP	OR10H2	NM_013939	human	genbank	54_36p	1	validated	silent	c.225	p.V75	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10H2	26538	hgsc.bcm.edu	36	19	15700642	15700642	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	15700642	15700642	C	A	SNP	OR10H2	NM_013939	human	genbank	54_36p	1	validated	silent	c.789	p.P263	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR7D2	162998	hgsc.bcm.edu	36	19	9158069	9158069	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	9158069	9158069	T	A	SNP	OR7D2	NM_175883	human	genbank	54_36p	1	provisional	silent	c.612	p.G204	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PDE4A	5141	hgsc.bcm.edu	36	19	10433644	10433644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	10433644	10433644	T	A	SNP	PDE4A	NM_006202	human	genbank	54_36p	1	validated	missense	c.995	p.L332H	1	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I"	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDE4C	5143	hgsc.bcm.edu	36	19	18182934	18182934	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	18182934	18182934	G	A	SNP	PDE4C	NM_000923	human	genbank	54_36p	-1	validated	silent	c.1944	p.P648	0	superfamily_HD-domain/PDEase-like	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PEG3	5178	hgsc.bcm.edu	36	19	62019829	62019829	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	62019829	62019829	C	T	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.1793	p.R598H	0.07	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PEG3	5178	hgsc.bcm.edu	36	19	62020752	62020752	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	62020752	62020752	T	C	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	silent	c.870	p.K290	0.12	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
PGLYRP2	114770	hgsc.bcm.edu	36	19	15443817	15443817	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	15443817	15443817	C	A	SNP	PGLYRP2	NM_052890	human	genbank	54_36p	-1	validated	silent	c.1227	p.V409	1	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	-	no_errors
PIK3R2	5296	hgsc.bcm.edu	36	19	18133834	18133835	+	Frame_Shift_Del	DEL	TT	TT	-	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	18133834	18133835	TT	-	DEL	PIK3R2	NM_005027	human	genbank	54_36p	1	validated	frame_shift_del	c.874_875	p.L292fs	0.013:0.276	HMMSmart_SM00324	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	"(deletion:cds_exon[18133776,18133861])"	no_errors
PKN1	5585	hgsc.bcm.edu	36	19	14441799	14441799	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	14441799	14441799	G	T	SNP	PKN1	NM_213560	human	genbank	54_36p	1	reviewed	missense	c.2310	p.E770D	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
PLAUR	5329	hgsc.bcm.edu	36	19	48851563	48851563	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	48851563	48851563	G	A	SNP	PLAUR	NM_002659	human	genbank	54_36p	-1	reviewed	missense	c.475	p.R159C	0	"superfamily_Snake toxin-like,HMMSmart_SM00134,PatternScan_LY6_UPAR"	"superfamily_Snake toxin-like,HMMSmart_SM00134,PatternScan_LY6_UPAR,HMMPfam_UPAR_LY6"	-	no_errors
PLD3	23646	hgsc.bcm.edu	36	19	45575839	45575839	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	45575839	45575839	C	T	SNP	PLD3	NM_001031696	human	genbank	54_36p	1	validated	silent	c.1392	p.F464	1	superfamily_SSF56024	"superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope"	-	no_errors
PLVAP	83483	hgsc.bcm.edu	36	19	17348777	17348777	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	17348777	17348777	G	A	SNP	PLVAP	NM_031310	human	genbank	54_36p	-1	provisional	silent	c.321	p.R107	0.08	HMMPfam_PV-1	HMMPfam_PV-1	-	no_errors
PPP2R1A	5518	hgsc.bcm.edu	36	19	57408146	57408146	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	57408146	57408146	C	T	SNP	PPP2R1A	NM_014225	human	genbank	54_36p	1	reviewed	missense	c.778	p.R260C	1	"superfamily_ARM repeat,HMMPfam_HEAT"	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
PRKCG	5582	hgsc.bcm.edu	36	19	59087648	59087648	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	59087648	59087648	G	A	SNP	PRKCG	NM_002739	human	genbank	54_36p	1	reviewed	missense	c.760	p.D254N	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
PRMT1	3276	hgsc.bcm.edu	36	19	54879103	54879103	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	54879103	54879103	C	T	SNP	PRMT1	NM_001536	human	genbank	54_36p	1	validated	missense	c.520	p.L174F	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
PRPF31	26121	hgsc.bcm.edu	36	19	59323308	59323308	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	59323308	59323308	C	-	DEL	PRPF31	NM_015629	human	genbank	54_36p	1	reviewed	frame_shift_del	c.994	p.Q332fs	1	HMMPfam_Nop	"HMMPfam_NOSIC,superfamily_Nop domain,HMMPfam_Nop,HMMPfam_Prp31_C"	"(deletion:cds_exon[59323260,59323387])"	no_errors
PRTN3	5657	hgsc.bcm.edu	36	19	798909	798909	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	798909	798909	C	T	SNP	PRTN3	NM_002777	human	genbank	54_36p	1	validated	silent	c.711	p.A237	0.95	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
PSMC4	5704	hgsc.bcm.edu	36	19	45177589	45177589	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	45177589	45177589	G	A	SNP	PSMC4	NM_006503	human	genbank	54_36p	1	reviewed	silent	c.699	p.S233	0.32	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
PTPRS	5802	hgsc.bcm.edu	36	19	5173817	5173817	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	5173817	5173817	T	C	SNP	PTPRS	NM_002850	human	genbank	54_36p	-1	reviewed	missense	c.2986	p.T996A	0.99	"superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060"	###############################################################################################################################################################################################################################################################	-	no_errors
RAB3D	9545	hgsc.bcm.edu	36	19	11297141	11297141	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	11297141	11297141	C	T	SNP	RAB3D	NM_004283	human	genbank	54_36p	-1	provisional	missense	c.593	p.G198D	0.71	NULL	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	-	no_errors
RRAS	6237	hgsc.bcm.edu	36	19	54832155	54832155	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	54832155	54832155	G	C	SNP	RRAS	NM_006270	human	genbank	54_36p	-1	provisional	nonsense	c.198	p.Y66*	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
RTN2	6253	hgsc.bcm.edu	36	19	50683961	50683961	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	50683961	50683961	G	A	SNP	RTN2	NM_005619	human	genbank	54_36p	-1	reviewed	silent	c.1365	p.L455	0.98	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
RYR1	6261	hgsc.bcm.edu	36	19	43651614	43651614	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	43651614	43651614	G	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.3550	p.G1184W	1	"HMMPfam_SPRY,HMMSmart_SM00449"	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
RYR1	6261	hgsc.bcm.edu	36	19	43672661	43672661	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	43672661	43672661	C	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.5920	p.R1974W	0.98	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
SARS2	54938	hgsc.bcm.edu	36	19	44113066	44113066	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	44113066	44113066	C	A	SNP	SARS2	NM_017827	human	genbank	54_36p	-1	reviewed	missense	c.151	p.G51C	1	NULL	"superfamily_tRNA_binding_arm,HMMPfam_Seryl_tRNA_N,superfamily_SSF55681,HMMPfam_tRNA-synt_2b"	-	no_errors
SGTA	6449	hgsc.bcm.edu	36	19	2713579	2713579	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	2713579	2713579	C	G	SNP	SGTA	NM_003021	human	genbank	54_36p	-1	reviewed	missense	c.561	p.E187D	1	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
SIGLEC11	114132	hgsc.bcm.edu	36	19	55145299	55145299	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	55145299	55145299	G	A	SNP	SIGLEC11	NM_052884	human	genbank	54_36p	-1	validated	nonsense	c.1801	p.Q601*	0	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMPfam_I-set,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC"	-	no_errors
SIGLEC11	114132	hgsc.bcm.edu	36	19	55153779	55153779	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	55153779	55153779	T	G	SNP	SIGLEC11	NM_052884	human	genbank	54_36p	-1	validated	silent	c.1260	p.G420	0	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
SIGLEC9	27180	hgsc.bcm.edu	36	19	56323492	56323493	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	56323492	56323493	-	T	INS	SIGLEC9	NM_014441	human	genbank	54_36p	1	provisional	frame_shift_ins	c.1116_1117	p.C372fs	0.386:0.057	NULL	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig"	-	no_errors
SIN3B	23309	hgsc.bcm.edu	36	19	16813586	16813586	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	16813586	16813586	C	T	SNP	SIN3B	NM_015260	human	genbank	54_36p	1	provisional	missense	c.389	p.S130L	0.01	NULL	"superfamily_PAH2 domain,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_SM00761"	-	no_errors
SIN3B	23309	hgsc.bcm.edu	36	19	16834182	16834182	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	16834182	16834182	G	T	SNP	SIN3B	NM_015260	human	genbank	54_36p	1	provisional	missense	c.1078	p.A360S	1	"HMMPfam_PAH,superfamily_PAH2 domain"	"HMMPfam_PAH,superfamily_PAH2 domain,HMMPfam_HDAC_interact,HMMSmart_SM00761"	-	no_errors
SLC17A7	57030	hgsc.bcm.edu	36	19	54627599	54627599	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	54627599	54627599	A	-	DEL	SLC17A7	NM_020309	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1139	p.M380fs	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"(deletion:cds_exon[54627588,54627720])"	no_errors
SLC1A6	6511	hgsc.bcm.edu	36	19	14940174	14940174	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	14940174	14940174	C	T	SNP	SLC1A6	NM_005071	human	genbank	54_36p	-1	provisional	silent	c.489	p.L163	0.96	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
SLC5A5	6528	hgsc.bcm.edu	36	19	17853859	17853859	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	17853859	17853859	C	T	SNP	SLC5A5	NM_000453	human	genbank	54_36p	1	validated	silent	c.1149	p.L383	0	NULL	"PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1"	-	no_errors
SLC7A10	56301	hgsc.bcm.edu	36	19	38394218	38394218	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	38394218	38394218	A	G	SNP	SLC7A10	NM_019849	human	genbank	54_36p	-1	validated	missense	c.854	p.I285T	0.74	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SMARCA4	6597	hgsc.bcm.edu	36	19	10974731	10974731	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	10974731	10974731	C	T	SNP	SMARCA4	NM_003072	human	genbank	54_36p	1	reviewed	silent	c.1839	p.S613	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_BRK,HMMSmart_SM00592"	###############################################################################################################################################################################################################################################################	-	no_errors
SPINT2	10653	hgsc.bcm.edu	36	19	43466240	43466240	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	43466240	43466240	C	T	SNP	SPINT2	NM_021102	human	genbank	54_36p	1	validated	silent	c.240	p.T80	0.89	"superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	"superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	-	no_errors
SYDE1	85360	hgsc.bcm.edu	36	19	15083225	15083225	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	15083225	15083225	G	A	SNP	SYDE1	NM_033025	human	genbank	54_36p	1	provisional	silent	c.1392	p.L464	1	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
SYT5	6861	hgsc.bcm.edu	36	19	60379269	60379270	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	60379269	60379270	-	A	INS	SYT5	NM_003180	human	genbank	54_36p	-1	validated	frame_shift_ins	c.288_287	p.S97fs	0.150:0.389	NULL	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
TBC1D17	79735	hgsc.bcm.edu	36	19	55073581	55073582	+	In_Frame_Ins	INS	-	-	CTG	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	55073581	55073582	-	CTG	INS	TBC1D17	NM_024682	human	genbank	54_36p	1	provisional	in_frame_ins	c.135_136	p.46in_frame_insL	0.346:0.883	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC"	-	no_errors
TNPO2	30000	hgsc.bcm.edu	36	19	12686707	12686708	+	Frame_Shift_Ins	INS	-	-	CGTTG	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	12686707	12686708	-	CGTTG	INS	TNPO2	NM_013433	human	genbank	54_36p	-1	validated	frame_shift_ins	c.818_817	p.E273fs	1.000:1.000	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_HEAT"	-	no_errors
TOMM40	10452	hgsc.bcm.edu	36	19	50089096	50089096	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	50089096	50089096	G	C	SNP	TOMM40	NM_006114	human	genbank	54_36p	1	validated	silent	c.576	p.G192	1	HMMPfam_Porin_3	HMMPfam_Porin_3	-	no_errors
TSHZ3	57616	hgsc.bcm.edu	36	19	36462022	36462022	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	36462022	36462022	C	T	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	missense	c.517	p.A173T	1	NULL	"PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
TULP2	7288	hgsc.bcm.edu	36	19	54077126	54077126	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	54077126	54077126	G	T	SNP	TULP2	NM_003323	human	genbank	54_36p	-1	reviewed	missense	c.1422	p.N474K	1	"superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1"	"PatternScan_TUB_2,superfamily_Tubby_C,HMMPfam_Tub,PatternScan_TUB_1"	-	no_errors
TYK2	7297	hgsc.bcm.edu	36	19	10337311	10337311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	10337311	10337311	A	T	SNP	TYK2	NM_003331	human	genbank	54_36p	-1	reviewed	missense	c.893	p.V298E	0	NULL	"PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
U2AF2	11338	hgsc.bcm.edu	36	19	60871699	60871699	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	60871699	60871699	G	A	SNP	U2AF2	NM_007279	human	genbank	54_36p	1	reviewed	missense	c.757	p.V253M	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
UBE2M	9040	hgsc.bcm.edu	36	19	63759885	63759885	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	63759885	63759885	C	T	SNP	UBE2M	NM_003969	human	genbank	54_36p	-1	reviewed	missense	c.328	p.V110I	1	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1"	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1"	-	no_errors
UQCR11	10975	hgsc.bcm.edu	36	19	1550447	1550447	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	1550447	1550447	C	G	SNP	UQCR	NM_006830	human	genbank	54_36p	-1	provisional	missense	c.163	p.D55H	0.99	HMMPfam_UCR_6-4kD	"superfamily_Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase),HMMPfam_UCR_6-4kD"	-	no_errors
VAV1	7409	hgsc.bcm.edu	36	19	6779827	6779827	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	6779827	6779827	A	G	SNP	VAV1	NM_005428	human	genbank	54_36p	1	reviewed	missense	c.1181	p.D394G	1	superfamily_SSF50729	###############################################################################################################################################################################################################################################################	-	no_errors
VAV1	7409	hgsc.bcm.edu	36	19	6779900	6779900	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	6779900	6779900	C	G	SNP	VAV1	NM_005428	human	genbank	54_36p	1	reviewed	silent	c.1254	p.S418	1	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	###############################################################################################################################################################################################################################################################	-	no_errors
VAV1	7409	hgsc.bcm.edu	36	19	6783147	6783147	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	6783147	6783147	T	C	SNP	VAV1	NM_005428	human	genbank	54_36p	1	reviewed	missense	c.1444	p.Y482H	1	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	###############################################################################################################################################################################################################################################################	-	no_errors
WDR88	126248	hgsc.bcm.edu	36	19	38320501	38320501	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	38320501	38320501	A	T	SNP	WDR88	NM_173479	human	genbank	54_36p	1	validated	missense	c.355	p.S119C	0.97	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,HMMSmart_SM00564,HMMPfam_PQQ,PatternScan_WD_REPEATS_1"	-	no_errors
XRCC1	7515	hgsc.bcm.edu	36	19	48742969	48742969	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	48742969	48742969	C	T	SNP	XRCC1	NM_006297	human	genbank	54_36p	-1	reviewed	silent	c.1200	p.R400	1	superfamily_BRCT domain	"HMMPfam_XRCC1_N,superfamily_Galactose-binding domain-like,superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292"	-	no_errors
YIPF2	78992	hgsc.bcm.edu	36	19	10895080	10895080	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	10895080	10895080	A	-	DEL	YIPF2	NM_024029	human	genbank	54_36p	-1	provisional	frame_shift_del	c.838	p.Y280fs	0.93	NULL	HMMPfam_Yip1	"(deletion:cds_exon[10894967,10895083])"	no_errors
ZFP112	7771	hgsc.bcm.edu	36	19	49523985	49523985	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	49523985	49523985	T	C	SNP	ZFP112	NM_001083335	human	genbank	54_36p	-1	validated	missense	c.2183	p.K728R	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZIM2	23619	hgsc.bcm.edu	36	19	61985245	61985245	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	61985245	61985245	G	T	SNP	ZIM2	NM_015363	human	genbank	54_36p	-1	provisional	missense	c.534	p.F178L	0.07	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF132	7691	hgsc.bcm.edu	36	19	63637215	63637215	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	63637215	63637215	G	C	SNP	ZNF132	NM_003433	human	genbank	54_36p	-1	validated	missense	c.1408	p.Q470E	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF136	7695	hgsc.bcm.edu	36	19	12157714	12157714	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	12157714	12157714	C	G	SNP	ZNF136	NM_003437	human	genbank	54_36p	1	validated	missense	c.118	p.L40V	0	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF155	7711	hgsc.bcm.edu	36	19	49193296	49193296	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	49193296	49193296	C	A	SNP	ZNF155	NM_003445	human	genbank	54_36p	1	validated	missense	c.1447	p.P483T	0.6	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF180	7733	hgsc.bcm.edu	36	19	49693201	49693201	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	49693201	49693201	G	A	SNP	ZNF180	NM_013256	human	genbank	54_36p	-1	validated	missense	c.107	p.P36L	0.01	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF211	10520	hgsc.bcm.edu	36	19	62844567	62844567	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	62844567	62844567	A	C	SNP	ZNF211	NM_006385	human	genbank	54_36p	1	validated	missense	c.940	p.I314L	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF211	10520	hgsc.bcm.edu	36	19	62844913	62844913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	62844913	62844913	G	A	SNP	ZNF211	NM_006385	human	genbank	54_36p	1	validated	missense	c.1286	p.R429Q	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF222	7673	hgsc.bcm.edu	36	19	49228433	49228433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	49228433	49228433	C	T	SNP	ZNF222	NM_013360	human	genbank	54_36p	1	validated	missense	c.766	p.P256S	0.83	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF235	9310	hgsc.bcm.edu	36	19	49484668	49484668	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	49484668	49484668	G	A	SNP	ZNF235	NM_004234	human	genbank	54_36p	-1	reviewed	missense	c.760	p.R254C	0	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF333	84449	hgsc.bcm.edu	36	19	14689502	14689502	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	14689502	14689502	G	C	SNP	ZNF333	NM_032433	human	genbank	54_36p	1	validated	missense	c.857	p.S286T	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF333	84449	hgsc.bcm.edu	36	19	14690061	14690061	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	19	14690061	14690061	A	G	SNP	ZNF333	NM_032433	human	genbank	54_36p	1	validated	missense	c.922	p.K308E	0.95	NULL	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF432	9668	hgsc.bcm.edu	36	19	57235607	57235607	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	57235607	57235607	G	A	SNP	ZNF432	NM_014650	human	genbank	54_36p	-1	provisional	nonsense	c.184	p.R62*	0.4	"superfamily_Krueppel-associated_box,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF45	7596	hgsc.bcm.edu	36	19	49109815	49109815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	49109815	49109815	C	A	SNP	ZNF45	NM_003425	human	genbank	54_36p	-1	provisional	missense	c.1613	p.S538I	0.03	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF528	84436	hgsc.bcm.edu	36	19	57610440	57610440	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	57610440	57610440	C	A	SNP	ZNF528	NM_032423	human	genbank	54_36p	1	validated	missense	c.523	p.Q175K	0	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF536	9745	hgsc.bcm.edu	36	19	35717640	35717640	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	35717640	35717640	G	A	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	silent	c.2217	p.A739	0.8	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF546	339327	hgsc.bcm.edu	36	19	45205058	45205058	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	45205058	45205058	C	G	SNP	ZNF546	NM_178544	human	genbank	54_36p	1	validated	missense	c.209	p.S70C	0.01	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF554	115196	hgsc.bcm.edu	36	19	2783405	2783405	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	2783405	2783405	C	-	DEL	ZNF554	NM_001102651	human	genbank	54_36p	1	validated	frame_shift_del	c.358	p.L120fs	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[2783301,2783492])"	no_errors
ZNF555	148254	hgsc.bcm.edu	36	19	2804696	2804696	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	2804696	2804696	T	C	SNP	ZNF555	NM_152791	human	genbank	54_36p	1	provisional	missense	c.1633	p.F545L	0.11	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_IG_MHC"	-	no_errors
ZNF559	84527	hgsc.bcm.edu	36	19	9313608	9313608	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	9313608	9313608	C	A	SNP	ZNF559	NM_032497	human	genbank	54_36p	1	provisional	missense	c.481	p.H161N	0	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF563	147837	hgsc.bcm.edu	36	19	12290870	12290870	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	19	12290870	12290870	G	C	SNP	ZNF563	NM_145276	human	genbank	54_36p	-1	validated	missense	c.969	p.S323R	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF571	51276	hgsc.bcm.edu	36	19	42747734	42747734	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	42747734	42747734	C	T	SNP	ZNF571	NM_016536	human	genbank	54_36p	-1	validated	missense	c.1436	p.C479Y	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF582	147948	hgsc.bcm.edu	36	19	61587606	61587606	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	19	61587606	61587606	G	C	SNP	ZNF582	NM_144690	human	genbank	54_36p	-1	provisional	missense	c.992	p.T331S	0.06	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF615	284370	hgsc.bcm.edu	36	19	57188024	57188024	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	57188024	57188024	C	T	SNP	ZNF615	NM_198480	human	genbank	54_36p	-1	provisional	missense	c.2117	p.R706K	0.99	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF681	148213	hgsc.bcm.edu	36	19	23719582	23719583	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	23719582	23719583	CA	-	DEL	ZNF681	NM_138286	human	genbank	54_36p	-1	validated	frame_shift_del	c.610_609	p.C203fs	1.000:1.000	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[23718254,23719965])"	no_errors
ZNF780B	163131	hgsc.bcm.edu	36	19	45233535	45233535	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	45233535	45233535	A	C	SNP	ZNF780B	NM_001005851	human	genbank	54_36p	-1	provisional	silent	c.1071	p.G357	0.99	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF8	7554	hgsc.bcm.edu	36	19	63498700	63498700	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	19	63498700	63498700	A	G	SNP	ZNF8	NM_021089	human	genbank	54_36p	1	validated	missense	c.1714	p.R572G	0.83	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF823	55552	hgsc.bcm.edu	36	19	11694208	11694208	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	19	11694208	11694208	T	C	SNP	ZNF823	NM_001080493	human	genbank	54_36p	-1	validated	missense	c.1141	p.T381A	0.01	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF85	7639	hgsc.bcm.edu	36	19	20923504	20923504	+	Missense_Mutation	SNP	G	G	T	rs56231962	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	20923504	20923504	G	T	SNP	ZNF85	NM_003429	human	genbank	54_36p	1	validated	missense	c.344	p.R115I	0.04	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_ZINC_PROTEASE"	-	no_errors
ZNF99	7652	hgsc.bcm.edu	36	19	22734121	22734121	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	19	22734121	22734121	T	C	SNP	ZNF99	NM_001080409	human	genbank	54_36p	-1	provisional	missense	c.493	p.I165V	0.25	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ADAM33	80332	hgsc.bcm.edu	36	20	3603433	3603433	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	3603433	3603433	A	G	SNP	ADAM33	NM_025220	human	genbank	54_36p	-1	reviewed	missense	c.397	p.C133R	1	HMMPfam_Pep_M12B_propep	###############################################################################################################################################################################################################################################################	-	no_errors
ANGPT4	51378	hgsc.bcm.edu	36	20	844772	844772	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	844772	844772	G	A	SNP	ANGPT4	NM_015985	human	genbank	54_36p	-1	reviewed	missense	c.86	p.A29V	0.01	NULL	"HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
ANKRD5	63926	hgsc.bcm.edu	36	20	9978141	9978141	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	9978141	9978141	A	T	SNP	ANKRD5	NM_022096	human	genbank	54_36p	1	validated	missense	c.924	p.R308S	0.2	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_EF-hand"	-	no_errors
ARFGAP1	55738	hgsc.bcm.edu	36	20	61377916	61377916	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	61377916	61377916	C	G	SNP	ARFGAP1	NM_175609	human	genbank	54_36p	1	reviewed	missense	c.89	p.P30R	1	"superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105"	"superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105"	-	no_errors
ARFGEF2	10564	hgsc.bcm.edu	36	20	47038451	47038451	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	47038451	47038451	C	G	SNP	ARFGEF2	NM_006420	human	genbank	54_36p	1	reviewed	missense	c.2378	p.T793R	1	"superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7"	"superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981"	-	no_errors
ATP9A	10079	hgsc.bcm.edu	36	20	49689290	49689290	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	49689290	49689290	C	T	SNP	ATP9A	NM_006045	human	genbank	54_36p	-1	validated	missense	c.1667	p.R556Q	1	"superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
BMP2	650	hgsc.bcm.edu	36	20	6706978	6706978	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	6706978	6706978	A	C	SNP	BMP2	NM_001200	human	genbank	54_36p	1	reviewed	missense	c.433	p.I145L	0.99	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
BPI	671	hgsc.bcm.edu	36	20	36369480	36369480	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	36369480	36369480	G	A	SNP	BPI	NM_001725	human	genbank	54_36p	1	reviewed	silent	c.240	p.G80	0	"superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP"	"superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2"	-	no_errors
BTBD3	22903	hgsc.bcm.edu	36	20	11851653	11851653	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	11851653	11851653	C	A	SNP	BTBD3	NM_014962	human	genbank	54_36p	1	validated	missense	c.908	p.A303E	0.04	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_PHR"	-	no_errors
C20orf185	359710	hgsc.bcm.edu	36	20	31120364	31120364	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	31120364	31120364	T	A	SNP	C20orf185	NM_182658	human	genbank	54_36p	1	provisional	missense	c.1073	p.V358D	0.43	"superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C"	"PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C"	-	no_errors
C20orf186	149954	hgsc.bcm.edu	36	20	31134874	31134875	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	31134874	31134875	-	C	INS	C20orf186	NM_182519	human	genbank	54_36p	1	validated	frame_shift_ins	c.93_94	p.V34fs	0.080:0.074	NULL	"HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C"	-	no_errors
C20orf43	51507	hgsc.bcm.edu	36	20	54521818	54521818	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	54521818	54521818	A	G	SNP	C20orf43	NM_016407	human	genbank	54_36p	1	validated	missense	c.518	p.N173S	1	HMMPfam_DUF602	HMMPfam_DUF602	-	no_errors
C20orf54	113278	hgsc.bcm.edu	36	20	692283	692283	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	692283	692283	T	C	SNP	C20orf54	NM_033409	human	genbank	54_36p	-1	validated	missense	c.932	p.N311S	0.93	HMMPfam_DUF1011	HMMPfam_DUF1011	-	no_errors
C20orf70	140683	hgsc.bcm.edu	36	20	31224428	31224428	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	31224428	31224428	G	C	SNP	C20orf70	NM_080574	human	genbank	54_36p	1	validated	missense	c.187	p.G63R	0	"HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom"	"HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom"	-	no_errors
C20orf85	128602	hgsc.bcm.edu	36	20	56169159	56169159	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	56169159	56169159	G	T	SNP	C20orf85	NM_178456	human	genbank	54_36p	1	validated	missense	c.289	p.G97C	1	NULL	NULL	-	no_errors
CDH22	64405	hgsc.bcm.edu	36	20	44303188	44303188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	44303188	44303188	C	T	SNP	CDH22	NM_021248	human	genbank	54_36p	-1	reviewed	missense	c.371	p.R124H	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH26	60437	hgsc.bcm.edu	36	20	58021179	58021179	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	58021179	58021179	A	-	DEL	CDH26	NM_177980	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2498	p.*833fs	0.01	NULL	"superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	"(deletion:cds_exon[58020977,58021180])"	no_errors
CDH4	1002	hgsc.bcm.edu	36	20	59853165	59853165	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	59853165	59853165	C	T	SNP	CDH4	NM_001794	human	genbank	54_36p	1	reviewed	missense	c.623	p.T208M	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDK5RAP1	51654	hgsc.bcm.edu	36	20	31448341	31448341	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	31448341	31448341	G	T	SNP	CDK5RAP1	NM_016408	human	genbank	54_36p	-1	reviewed	missense	c.191	p.T64N	0.92	NULL	"HMMPfam_UPF0004,superfamily_Radical SAM enzymes,HMMSmart_SM00729,PatternScan_UPF0004,HMMPfam_Radical_SAM,HMMPfam_TRAM"	-	no_errors
CEP250	11190	hgsc.bcm.edu	36	20	33513745	33513745	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	33513745	33513745	G	A	SNP	CEP250	NM_007186	human	genbank	54_36p	1	reviewed	missense	c.139	p.E47K	1	NULL	superfamily_Prefoldin	-	no_errors
CHD6	84181	hgsc.bcm.edu	36	20	39475435	39475435	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	39475435	39475435	C	G	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	silent	c.7074	p.L2358	0.73	NULL	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CHD6	84181	hgsc.bcm.edu	36	20	39483980	39483980	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	39483980	39483980	T	C	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	missense	c.4709	p.Y1570C	1	NULL	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CHD6	84181	hgsc.bcm.edu	36	20	39514845	39514845	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	39514845	39514845	C	T	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	missense	c.3272	p.R1091H	1	NULL	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CHD6	84181	hgsc.bcm.edu	36	20	39518018	39518018	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	39518018	39518018	T	C	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	missense	c.2845	p.K949E	1	NULL	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CHD6	84181	hgsc.bcm.edu	36	20	39545470	39545470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	39545470	39545470	C	T	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	silent	c.2361	p.L787	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
COX4I2	84701	hgsc.bcm.edu	36	20	29690491	29690491	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	29690491	29690491	A	C	SNP	COX4I2	NM_032609	human	genbank	54_36p	1	reviewed	silent	c.10	p.R4	0.4	NULL	"HMMPfam_COX4,superfamily_COX4"	-	no_errors
CPNE1	8904	hgsc.bcm.edu	36	20	33678648	33678649	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	33678648	33678649	-	A	INS	CPNE1	NM_003915	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1204_1203	p.A401fs	1.000:0.999	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	"HMMSmart_C2,HMMPfam_C2,superfamily_C2_CaLB,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	-	no_errors
CST9	128822	hgsc.bcm.edu	36	20	23532223	23532223	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	23532223	23532223	C	G	SNP	CST9	NM_001008693	human	genbank	54_36p	-1	reviewed	missense	c.404	p.S135T	0	superfamily_SSF54403	superfamily_SSF54403	-	no_errors
CTSA	5476	hgsc.bcm.edu	36	20	43956098	43956098	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	43956098	43956098	G	C	SNP	CTSA	NM_000308	human	genbank	54_36p	1	reviewed	missense	c.811	p.D271H	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER,PatternScan_CARBOXYPEPT_SER_HIS"	-	no_errors
DNMT3B	1789	hgsc.bcm.edu	36	20	30840389	30840389	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	30840389	30840389	C	G	SNP	DNMT3B	NM_006892	human	genbank	54_36p	1	reviewed	silent	c.723	p.A241	1	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293"	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1"	-	no_errors
DNMT3B	1789	hgsc.bcm.edu	36	20	30846958	30846958	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	30846958	30846958	C	G	SNP	DNMT3B	NM_006892	human	genbank	54_36p	1	reviewed	missense	c.1209	p.C403W	0.08	NULL	"HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT"	-	no_errors
EBF4	57593	hgsc.bcm.edu	36	20	2634893	2634893	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	2634893	2634893	G	A	SNP	EBF4	XM_001713721	human	genbank	54_36p	1	model	missense	c.385	p.D129N	1	NULL	"PatternScan_COE,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
GSS	2937	hgsc.bcm.edu	36	20	32988441	32988441	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	32988441	32988441	C	G	SNP	GSS	NM_000178	human	genbank	54_36p	-1	reviewed	missense	c.655	p.D219H	1	"superfamily_SSF56059,HMMPfam_GSH_synth_ATP,HMMPfam_GSH_synthase,superfamily_PreATP-grasp-like"	"superfamily_SSF56059,HMMPfam_GSH_synth_ATP,HMMPfam_GSH_synthase,superfamily_PreATP-grasp-like"	-	no_errors
HAO1	54363	hgsc.bcm.edu	36	20	7814210	7814210	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	7814210	7814210	C	T	SNP	HAO1	NM_017545	human	genbank	54_36p	-1	reviewed	missense	c.1000	p.E334K	0.99	"superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh"	"superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh,PatternScan_FMN_HYDROXY_ACID_DH_1"	-	no_errors
HAO1	54363	hgsc.bcm.edu	36	20	7863282	7863282	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	7863282	7863282	T	A	SNP	HAO1	NM_017545	human	genbank	54_36p	-1	reviewed	missense	c.138	p.R46S	1	"HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases"	"HMMPfam_FMN_dh,PatternScan_FMN_HYDROXY_ACID_DH_1,superfamily_FMN-linked oxidoreductases"	-	no_errors
ID1	3397	hgsc.bcm.edu	36	20	29657150	29657150	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	29657150	29657150	A	G	SNP	ID1	NM_002165	human	genbank	54_36p	1	reviewed	missense	c.299	p.D100G	1	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	-	no_errors
ITPA	3704	hgsc.bcm.edu	36	20	3142676	3142676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	3142676	3142676	G	T	SNP	ITPA	NM_033453	human	genbank	54_36p	1	reviewed	missense	c.235	p.A79S	1	"superfamily_SSF52972,HMMPfam_Ham1p_like"	"superfamily_SSF52972,HMMPfam_Ham1p_like"	-	no_errors
KCNQ2	3785	hgsc.bcm.edu	36	20	61541487	61541487	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	61541487	61541487	C	T	SNP	KCNQ2	NM_172107	human	genbank	54_36p	-1	reviewed	missense	c.835	p.G279S	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
TTI1	9675	hgsc.bcm.edu	36	20	36075018	36075018	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	36075018	36075018	C	G	SNP	KIAA0406	NM_014657	human	genbank	54_36p	-1	predicted	missense	c.615	p.L205F	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
L3MBTL1	26013	hgsc.bcm.edu	36	20	41602222	41602222	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	41602222	41602222	G	A	SNP	L3MBTL	NM_015478	human	genbank	54_36p	1	reviewed	missense	c.1921	p.V641M	0.47	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,HMMPfam_zf-C2HC"	-	no_errors
LBP	3929	hgsc.bcm.edu	36	20	36431116	36431116	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	36431116	36431116	C	A	SNP	LBP	NM_004139	human	genbank	54_36p	1	reviewed	missense	c.1045	p.L349M	0.39	"HMMPfam_LBP_BPI_CETP_C,superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00329"	"superfamily_Bactericidal permeability-increasing protein BPI,PatternScan_LBP_BPI_CETP,HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329"	-	no_errors
MMP9	4318	hgsc.bcm.edu	36	20	44071077	44071077	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	44071077	44071077	G	C	SNP	MMP9	NM_004994	human	genbank	54_36p	1	reviewed	silent	c.105	p.L35	0.09	superfamily_PGBD-like	###############################################################################################################################################################################################################################################################	-	no_errors
MOCS3	27304	hgsc.bcm.edu	36	20	49009312	49009312	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	49009312	49009312	G	T	SNP	MOCS3	NM_014484	human	genbank	54_36p	1	reviewed	missense	c.526	p.V176L	1	"superfamily_MoeB,HMMPfam_ThiF"	"superfamily_MoeB,HMMPfam_ThiF,HMMPfam_MoeZ_MoeB,superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD"	-	no_errors
MYBL2	4605	hgsc.bcm.edu	36	20	41777255	41777255	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	41777255	41777255	T	C	SNP	MYBL2	NM_002466	human	genbank	54_36p	1	reviewed	missense	c.1892	p.L631P	1	NULL	"HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Cmyb_C"	-	no_errors
MYH7B	57644	hgsc.bcm.edu	36	20	33032526	33032526	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	33032526	33032526	T	G	SNP	MYH7B	NM_020884	human	genbank	54_36p	1	validated	splice_site	c.653+2	e7+2	1	-	-	-	no_errors
NCOA3	8202	hgsc.bcm.edu	36	20	45711204	45711205	+	In_Frame_Ins	INS	-	-	CTG	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	45711204	45711205	-	CTG	INS	NCOA3	NM_181659	human	genbank	54_36p	1	reviewed	in_frame_ins	c.3595_3596	p.1201in_frame_insA	0.000:0.000	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NFATC2	4773	hgsc.bcm.edu	36	20	49524079	49524079	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	49524079	49524079	A	G	SNP	NFATC2	NM_173091	human	genbank	54_36p	-1	reviewed	missense	c.1553	p.I518T	1	"superfamily_p53-like transcription factors,HMMPfam_RHD"	"superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
PHF20	51230	hgsc.bcm.edu	36	20	33920870	33920870	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	33920870	33920870	G	A	SNP	PHF20	NM_016436	human	genbank	54_36p	1	validated	missense	c.905	p.R302Q	1	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
PLCB1	23236	hgsc.bcm.edu	36	20	8646361	8646361	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	8646361	8646361	A	G	SNP	PLCB1	NM_015192	human	genbank	54_36p	1	reviewed	missense	c.1379	p.Y460C	1	"HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases"	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C"	-	no_errors
PREX1	57580	hgsc.bcm.edu	36	20	46784490	46784490	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	46784490	46784490	C	G	SNP	PREX1	NM_020820	human	genbank	54_36p	-1	reviewed	missense	c.519	p.L173F	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	###############################################################################################################################################################################################################################################################	-	no_errors
PROKR2	128674	hgsc.bcm.edu	36	20	5242732	5242732	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	5242732	5242732	A	G	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	missense	c.284	p.L95P	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PRPF6	24148	hgsc.bcm.edu	36	20	62112060	62112060	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	62112060	62112060	A	T	SNP	PRPF6	NM_012469	human	genbank	54_36p	1	reviewed	missense	c.1250	p.E417V	1	"superfamily_SSF48452,HMMSmart_HAT"	"HMMPfam_PRP1_N,HMMSmart_HAT,superfamily_SSF48452,HMMPfam_TPR_1"	-	no_errors
PTK6	5753	hgsc.bcm.edu	36	20	61632607	61632607	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	61632607	61632607	T	C	SNP	PTK6	NM_005975	human	genbank	54_36p	-1	reviewed	missense	c.950	p.N317S	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
PTPRT	11122	hgsc.bcm.edu	36	20	40160575	40160575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	40160575	40160575	G	T	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.3803	p.T1268N	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRT	11122	hgsc.bcm.edu	36	20	40223576	40223588	+	Frame_Shift_Del	DEL	GCTCCCCGCGGCT	GCTCCCCGCGGCT	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	GCTCCCCGCGGCT	GCTCCCCGCGGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	40223576	40223588	GCTCCCCGCGGCT	-	DEL	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2569_2557	p.S853fs	0.998:1.000:1.000:1.000:0.960:0.973:0.974:0.872:0.994:1.000:1.000:1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[40223406,40223596])"	no_errors
PTPRT	11122	hgsc.bcm.edu	36	20	40842323	40842323	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	40842323	40842323	G	A	SNP	PTPRT	NM_133170	human	genbank	54_36p	-1	reviewed	missense	c.517	p.H173Y	1	"HMMPfam_MAM,HMMSmart_SM00137"	###############################################################################################################################################################################################################################################################	-	no_errors
RALY	22913	hgsc.bcm.edu	36	20	32125080	32125080	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	32125080	32125080	A	T	SNP	RALY	NM_016732	human	genbank	54_36p	1	reviewed	nonsense	c.307	p.R103*	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
RBPJL	11317	hgsc.bcm.edu	36	20	43375525	43375525	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	43375525	43375525	G	T	SNP	RBPJL	NM_014276	human	genbank	54_36p	1	reviewed	missense	c.623	p.C208F	1	"superfamily_Beta-trefoil,HMMPfam_Beta-trefoil"	"superfamily_P53_like_DNA_bnd,HMMPfam_LAG1-DNAbind,superfamily_Beta-trefoil,HMMPfam_Beta-trefoil,superfamily_Ig_E-set,HMMPfam_TIG"	-	no_errors
RP5-1022P6.2	56261	hgsc.bcm.edu	36	20	5504594	5504594	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	5504594	5504594	C	T	SNP	RP5-1022P6.2	NM_019593	human	genbank	54_36p	-1	validated	missense	c.736	p.D246N	1	NULL	"superfamily_CBD_4,HMMPfam_CBM_20,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD"	-	no_errors
SALL4	57167	hgsc.bcm.edu	36	20	49840295	49840295	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	49840295	49840295	G	A	SNP	SALL4	NM_020436	human	genbank	54_36p	-1	reviewed	missense	c.2134	p.L712F	0	NULL	"HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
SALL4	57167	hgsc.bcm.edu	36	20	49841710	49841710	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	49841710	49841710	T	-	DEL	SALL4	NM_020436	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.719	p.N240fs	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"(deletion:cds_exon[49839968,49842298])"	no_errors
SIRPD	128646	hgsc.bcm.edu	36	20	1480452	1480452	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	1480452	1480452	G	T	SNP	SIRPD	NM_178460	human	genbank	54_36p	-1	provisional	silent	c.306	p.T102	0.43	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	-	no_errors
SIRPD	128646	hgsc.bcm.edu	36	20	1480543	1480543	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	1480543	1480543	C	T	SNP	SIRPD	NM_178460	human	genbank	54_36p	-1	provisional	missense	c.215	p.R72Q	0	"HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726"	-	no_errors
SLC12A5	57468	hgsc.bcm.edu	36	20	44107056	44107056	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	44107056	44107056	C	T	SNP	SLC12A5	NM_020708	human	genbank	54_36p	1	reviewed	missense	c.1439	p.A480V	1	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC12A5	57468	hgsc.bcm.edu	36	20	44108387	44108387	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	44108387	44108387	C	G	SNP	SLC12A5	NM_020708	human	genbank	54_36p	1	reviewed	missense	c.1692	p.F564L	1	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC23A2	9962	hgsc.bcm.edu	36	20	4785800	4785800	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	4785800	4785800	C	G	SNP	SLC23A2	NM_005116	human	genbank	54_36p	-1	reviewed	missense	c.1771	p.G591R	1	NULL	"HMMPfam_Xan_ur_permease,PatternScan_XANTH_URACIL_PERMASE"	-	no_errors
SLC24A3	57419	hgsc.bcm.edu	36	20	19209705	19209705	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	19209705	19209705	G	A	SNP	SLC24A3	NM_020689	human	genbank	54_36p	1	validated	missense	c.245	p.R82Q	0	NULL	HMMPfam_Na_Ca_ex	-	no_errors
SLC9A8	23315	hgsc.bcm.edu	36	20	47865032	47865032	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	47865032	47865032	C	T	SNP	SLC9A8	NM_015266	human	genbank	54_36p	1	validated	missense	c.107	p.P36L	1	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
SLCO4A1	28231	hgsc.bcm.edu	36	20	60769848	60769848	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	60769848	60769848	T	A	SNP	SLCO4A1	NM_016354	human	genbank	54_36p	1	validated	missense	c.1678	p.S560T	0.97	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	"HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
SNPH	9751	hgsc.bcm.edu	36	20	1225867	1225867	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	20	1225867	1225867	C	G	SNP	SNPH	NM_014723	human	genbank	54_36p	1	reviewed	nonsense	c.129	p.Y43*	1	NULL	NULL	-	no_errors
SNPH	9751	hgsc.bcm.edu	36	20	1233810	1233810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	1233810	1233810	G	A	SNP	SNPH	NM_014723	human	genbank	54_36p	1	reviewed	silent	c.597	p.E199	0.43	NULL	NULL	-	no_errors
SNRPB	6628	hgsc.bcm.edu	36	20	2394385	2394385	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	2394385	2394385	G	A	SNP	SNRPB	NM_198216	human	genbank	54_36p	-1	reviewed	missense	c.236	p.S79L	1	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651"	-	no_errors
SPINT4	391253	hgsc.bcm.edu	36	20	43784521	43784521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	43784521	43784521	G	A	SNP	SPINT4	NM_178455	human	genbank	54_36p	1	provisional	missense	c.101	p.C34Y	0.01	NULL	"PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI"	-	no_errors
SRC	6714	hgsc.bcm.edu	36	20	35464354	35464354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	35464354	35464354	G	C	SNP	SRC	NM_005417	human	genbank	54_36p	1	reviewed	missense	c.1219	p.D407H	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
SULF2	55959	hgsc.bcm.edu	36	20	45727427	45727427	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	45727427	45727427	G	C	SNP	SULF2	NM_018837	human	genbank	54_36p	-1	validated	missense	c.1920	p.N640K	1	superfamily_Alkaline phosphatase-like	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1"	-	no_errors
SULF2	55959	hgsc.bcm.edu	36	20	45798860	45798860	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	20	45798860	45798860	G	A	SNP	SULF2	NM_018837	human	genbank	54_36p	-1	validated	missense	c.409	p.R137W	1	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like"	"HMMPfam_Sulfatase,PatternScan_SULFATASE_1,superfamily_Alkaline phosphatase-like"	-	no_errors
TSHZ2	128553	hgsc.bcm.edu	36	20	51306452	51306452	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	20	51306452	51306452	G	A	SNP	TSHZ2	NM_173485	human	genbank	54_36p	1	validated	silent	c.3048	p.T1016	1	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX,HMMPfam_Homeobox,HMMPfam_zf-C2H2"	-	no_errors
XRN2	22803	hgsc.bcm.edu	36	20	21284789	21284789	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	20	21284789	21284789	G	T	SNP	XRN2	NM_012255	human	genbank	54_36p	1	reviewed	nonsense	c.2092	p.E698*	1	NULL	HMMPfam_XRN_N	-	no_errors
YTHDF1	54915	hgsc.bcm.edu	36	20	61304644	61304644	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	20	61304644	61304644	G	A	SNP	YTHDF1	NM_017798	human	genbank	54_36p	-1	validated	missense	c.1093	p.H365Y	1	NULL	HMMPfam_YTH	-	no_errors
ZFP64	55734	hgsc.bcm.edu	36	20	50202719	50202719	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	20	50202719	50202719	C	-	DEL	ZFP64	NM_018197	human	genbank	54_36p	-1	validated	frame_shift_del	c.1419	p.L475fs	0.41	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[50202092,50203374])"	no_errors
ABCG1	9619	hgsc.bcm.edu	36	21	42581464	42581464	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	21	42581464	42581464	G	T	SNP	ABCG1	NM_004915	human	genbank	54_36p	1	reviewed	missense	c.1233	p.R411S	1	HMMPfam_ABC2_membrane	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane"	-	no_errors
ADAMTS5	11096	hgsc.bcm.edu	36	21	27227082	27227082	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	27227082	27227082	G	A	SNP	ADAMTS5	NM_007038	human	genbank	54_36p	-1	reviewed	silent	c.1842	p.R614	0.95	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
BACE2	25825	hgsc.bcm.edu	36	21	41544648	41544648	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	41544648	41544648	C	G	SNP	BACE2	NM_012105	human	genbank	54_36p	1	reviewed	missense	c.1084	p.L362V	1	"superfamily_Acid proteases,HMMPfam_Asp"	"superfamily_Acid proteases,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
BACH1	571	hgsc.bcm.edu	36	21	29636933	29636933	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	21	29636933	29636933	G	T	SNP	BACH1	NM_001186	human	genbank	54_36p	1	reviewed	nonsense	c.2119	p.E707*	0.23	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	-	no_errors
GCFC1	94104	hgsc.bcm.edu	36	21	33056492	33056492	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	33056492	33056492	A	C	SNP	C21orf66	NM_016631	human	genbank	54_36p	-1	reviewed	missense	c.657	p.I219M	1	NULL	HMMPfam_GCFC	-	no_errors
C2CD2	25966	hgsc.bcm.edu	36	21	42200301	42200301	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	42200301	42200301	G	-	DEL	C2CD2	NM_015500	human	genbank	54_36p	-1	validated	frame_shift_del	c.1187	p.P396fs	1	NULL	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"(deletion:cds_exon[42200170,42200344])"	no_errors
DONSON	29980	hgsc.bcm.edu	36	21	33876164	33876164	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	21	33876164	33876164	C	A	SNP	DONSON	NM_017613	human	genbank	54_36p	-1	reviewed	missense	c.1114	p.D372Y	1	NULL	NULL	-	no_errors
DOPEY2	9980	hgsc.bcm.edu	36	21	36531450	36531450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	21	36531450	36531450	G	C	SNP	DOPEY2	NM_005128	human	genbank	54_36p	1	validated	missense	c.2643	p.W881C	1	NULL	HMMPfam_Dopey_N	-	no_errors
DSCAM	1826	hgsc.bcm.edu	36	21	40569949	40569949	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	40569949	40569949	C	G	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	missense	c.2301	p.K767N	1	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	"superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
DYRK1A	1859	hgsc.bcm.edu	36	21	37784529	37784529	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	21	37784529	37784529	A	G	SNP	DYRK1A	NM_001396	human	genbank	54_36p	1	reviewed	missense	c.847	p.I283V	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
GART	2618	hgsc.bcm.edu	36	21	33803992	33803992	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	33803992	33803992	T	-	DEL	GART	NM_000819	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2420	p.K807fs	0.72	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[33803960,33804097])"	no_errors
GART	2618	hgsc.bcm.edu	36	21	33803992	33803992	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	21	33803992	33803992	T	-	DEL	GART	NM_000819	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2420	p.K807fs	0.72	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[33803960,33804097])"	no_errors
GART	2618	hgsc.bcm.edu	36	21	33815163	33815163	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	33815163	33815163	C	G	SNP	GART	NM_000819	human	genbank	54_36p	-1	reviewed	missense	c.1423	p.G475R	1	"HMMPfam_AIRS,superfamily_PurM N-terminal domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ITSN1	6453	hgsc.bcm.edu	36	21	34176536	34176536	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	21	34176536	34176536	C	G	SNP	ITSN1	NM_003024	human	genbank	54_36p	1	reviewed	silent	c.4461	p.L1487	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	###############################################################################################################################################################################################################################################################	-	no_errors
KCNJ15	3772	hgsc.bcm.edu	36	21	38594008	38594008	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	21	38594008	38594008	A	T	SNP	KCNJ15	NM_002243	human	genbank	54_36p	1	reviewed	nonsense	c.955	p.K319*	1	"HMMPfam_IRK,superfamily_Ig_E-set"	"superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set"	-	no_errors
KCNJ15	3772	hgsc.bcm.edu	36	21	38594117	38594117	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	21	38594117	38594117	A	T	SNP	KCNJ15	NM_002243	human	genbank	54_36p	1	reviewed	missense	c.1064	p.Y355F	1	"HMMPfam_IRK,superfamily_Ig_E-set"	"HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324"	-	no_errors
KRTAP19-4	337971	hgsc.bcm.edu	36	21	30791141	30791141	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	21	30791141	30791141	G	A	SNP	KRTAP19-4	NM_181610	human	genbank	54_36p	-1	provisional	silent	c.159	p.C53	0	NULL	NULL	-	no_errors
KRTAP19-4	337971	hgsc.bcm.edu	36	21	30791269	30791269	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	30791269	30791269	G	T	SNP	KRTAP19-4	NM_181610	human	genbank	54_36p	-1	provisional	missense	c.31	p.L11M	0.98	NULL	NULL	-	no_errors
KRTAP27-1	643812	hgsc.bcm.edu	36	21	30631311	30631311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	30631311	30631311	G	A	SNP	KRTAP27-1	NM_001077711	human	genbank	54_36p	-1	provisional	missense	c.547	p.P183S	0	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
MCM3AP	8888	hgsc.bcm.edu	36	21	46479757	46479757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	21	46479757	46479757	C	T	SNP	MCM3AP	NM_003906	human	genbank	54_36p	-1	reviewed	missense	c.5796	p.M1932I	0	NULL	"superfamily_SSF54928,HMMPfam_SAC3_GANP"	-	no_errors
MCM3AP	8888	hgsc.bcm.edu	36	21	46487228	46487228	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	46487228	46487228	T	C	SNP	MCM3AP	NM_003906	human	genbank	54_36p	-1	reviewed	missense	c.5342	p.N1781S	0.92	NULL	"HMMPfam_SAC3_GANP,superfamily_SSF54928"	-	no_errors
MCM3AP	8888	hgsc.bcm.edu	36	21	46487232	46487233	+	Frame_Shift_Ins	INS	-	-	GG	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	46487232	46487233	-	GG	INS	MCM3AP	NM_003906	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.5338_5337	p.K1779fs	1.000:1.000	NULL	"HMMPfam_SAC3_GANP,superfamily_SSF54928"	-	no_errors
MORC3	23515	hgsc.bcm.edu	36	21	36666647	36666647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	36666647	36666647	G	A	SNP	MORC3	NM_015358	human	genbank	54_36p	1	reviewed	missense	c.2614	p.V872I	1	NULL	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMPfam_zf-CW"	-	no_errors
PRMT2	3275	hgsc.bcm.edu	36	21	46888723	46888723	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	46888723	46888723	C	T	SNP	PRMT2	NM_001535	human	genbank	54_36p	1	validated	silent	c.222	p.G74	0.97	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_MTS"	-	no_errors
TMPRSS15	5651	hgsc.bcm.edu	36	21	18620749	18620749	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	21	18620749	18620749	C	A	SNP	PRSS7	NM_002772	human	genbank	54_36p	-1	reviewed	missense	c.1792	p.G598W	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	###############################################################################################################################################################################################################################################################	-	no_errors
TMPRSS15	5651	hgsc.bcm.edu	36	21	18623405	18623405	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	21	18623405	18623405	C	T	SNP	PRSS7	NM_002772	human	genbank	54_36p	-1	reviewed	missense	c.1732	p.D578N	0.97	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	###############################################################################################################################################################################################################################################################	-	no_errors
LTN1	26046	hgsc.bcm.edu	36	21	29261077	29261077	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	29261077	29261077	T	-	DEL	RNF160	NM_015565	human	genbank	54_36p	-1	validated	frame_shift_del	c.1607	p.N536fs	0	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00744,HMMPfam_zf-C3HC4"	"(deletion:cds_exon[29260563,29261372])"	no_errors
SAMSN1	64092	hgsc.bcm.edu	36	21	14811202	14811202	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	21	14811202	14811202	C	T	SNP	SAMSN1	NM_022136	human	genbank	54_36p	-1	validated	missense	c.161	p.G54E	0.98	NULL	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
SETD4	54093	hgsc.bcm.edu	36	21	36342503	36342503	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	21	36342503	36342503	C	T	SNP	SETD4	NM_017438	human	genbank	54_36p	-1	validated	missense	c.269	p.R90Q	0.64	"HMMPfam_SET,superfamily_SET domain"	"HMMPfam_SET,superfamily_SET domain,HMMPfam_Rubis-subs-bind"	-	no_errors
TIAM1	7074	hgsc.bcm.edu	36	21	31539714	31539714	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	21	31539714	31539714	G	C	SNP	TIAM1	NM_003253	human	genbank	54_36p	-1	validated	missense	c.1545	p.F515L	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_RBD,HMMSmart_RBD,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1"	-	no_errors
TMPRSS2	7113	hgsc.bcm.edu	36	21	41762266	41762266	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	41762266	41762266	T	A	SNP	TMPRSS2	NM_005656	human	genbank	54_36p	-1	reviewed	missense	c.1241	p.Y414F	0	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
TMPRSS3	64699	hgsc.bcm.edu	36	21	42676377	42676377	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	42676377	42676377	C	A	SNP	TMPRSS3	NM_024022	human	genbank	54_36p	-1	reviewed	splice_site	c.617-1	e7-1	1	-	-	-	no_errors
TMPRSS3	64699	hgsc.bcm.edu	36	21	42676377	42676377	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	21	42676377	42676377	C	A	SNP	TMPRSS3	NM_024022	human	genbank	54_36p	-1	reviewed	splice_site	c.617-1	e7-1	1	-	-	-	no_errors
TTC3	7267	hgsc.bcm.edu	36	21	37420263	37420263	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	21	37420263	37420263	C	T	SNP	TTC3	NM_001001894	human	genbank	54_36p	1	validated	missense	c.1247	p.A416V	0	"superfamily_SSF48452,superfamily_Spectrin"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,superfamily_Spectrin,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
TTC3	7267	hgsc.bcm.edu	36	21	37446113	37446113	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	21	37446113	37446113	A	-	DEL	TTC3	NM_001001894	human	genbank	54_36p	1	validated	frame_shift_del	c.2327	p.E779fs	1	"superfamily_Spectrin,superfamily_SSF48452"	"HMMPfam_TPR_1,HMMSmart_RING,HMMPfam_zf-C3HC4,HMMSmart_TPR,superfamily_Spectrin,superfamily_SSF48452,superfamily_SSF57850"	"(deletion:cds_exon[37446063,37446199])"	no_errors
ZNF295	49854	hgsc.bcm.edu	36	21	42284620	42284620	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0727-01A-01W-0370-10	TCGA-13-0727-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	42284620	42284620	T	G	SNP	ZNF295	NM_001098402	human	genbank	54_36p	-1	validated	missense	c.2654	p.E885A	0.97	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF295	49854	hgsc.bcm.edu	36	21	42284620	42284620	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	21	42284620	42284620	T	G	SNP	ZNF295	NM_001098402	human	genbank	54_36p	-1	validated	missense	c.2654	p.E885A	0.97	NULL	"HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ADRBK2	157	hgsc.bcm.edu	36	22	24448326	24448326	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	22	24448326	24448326	G	C	SNP	ADRBK2	NM_005160	human	genbank	54_36p	1	reviewed	missense	c.1976	p.R659P	0.98	superfamily_SSF50729	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
AIFM3	150209	hgsc.bcm.edu	36	22	19660811	19660811	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	19660811	19660811	G	T	SNP	AIFM3	NM_144704	human	genbank	54_36p	1	provisional	silent	c.1014	p.V338	1	"HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_Rieske,superfamily_ISP domain,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain"	-	no_errors
AP1B1	162	hgsc.bcm.edu	36	22	28067638	28067638	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	22	28067638	28067638	C	T	SNP	AP1B1	NM_001127	human	genbank	54_36p	-1	reviewed	missense	c.1648	p.E550K	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Adaptin_N,HMMSmart_SM00185,superfamily_Clathrin adaptor appendage domain,HMMSmart_SM00809,HMMPfam_Alpha_adaptinC2,superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C"	-	no_errors
APOBEC3H	164668	hgsc.bcm.edu	36	22	37827334	37827334	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	37827334	37827334	C	T	SNP	APOBEC3H	NM_181773	human	genbank	54_36p	1	validated	silent	c.297	p.H99	0	"HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like"	"HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like,PatternScan_CYT_DCMP_DEAMINASES,HMMPfam_APOBEC_C"	-	no_errors
APOL3	80833	hgsc.bcm.edu	36	22	34886755	34886755	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	34886755	34886755	G	T	SNP	APOL3	NM_145640	human	genbank	54_36p	-1	reviewed	missense	c.131	p.S44Y	0	NULL	HMMPfam_ApoL	-	no_errors
BCR	613	hgsc.bcm.edu	36	22	21964794	21964794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	21964794	21964794	A	T	SNP	BCR	NM_004327	human	genbank	54_36p	1	reviewed	missense	c.2849	p.Y950F	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
BPIL2	254240	hgsc.bcm.edu	36	22	31145387	31145387	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	31145387	31145387	G	A	SNP	BPIL2	NM_174932	human	genbank	54_36p	-1	provisional	missense	c.1222	p.R408C	1	"HMMPfam_LBP_BPI_CETP_C,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2"	"superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2"	-	no_errors
C22orf32	91689	hgsc.bcm.edu	36	22	40805873	40805873	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	40805873	40805873	G	A	SNP	C22orf32	NM_033318	human	genbank	54_36p	1	predicted	missense	c.155	p.R52H	1	HMMPfam_DDDD	HMMPfam_DDDD	-	no_errors
CABIN1	23523	hgsc.bcm.edu	36	22	22813449	22813449	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	22813449	22813449	T	-	DEL	CABIN1	NM_012295	human	genbank	54_36p	1	reviewed	frame_shift_del	c.3308	p.Q1104fs	1	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_MEF2_binding"	"(deletion:cds_exon[22813405,22813666])"	no_errors
CABIN1	23523	hgsc.bcm.edu	36	22	22813449	22813449	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	22813449	22813449	T	A	SNP	CABIN1	NM_012295	human	genbank	54_36p	1	reviewed	missense	c.3308	p.I1103N	1	superfamily_SSF48452	"HMMPfam_TPR_1,HMMPfam_MEF2_binding,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
CPT1B	1375	hgsc.bcm.edu	36	22	49359711	49359711	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	49359711	49359711	T	-	DEL	CPT1B	NM_004377	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.889	p.M297fs	1	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf"	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2"	"(deletion:cds_exon[49359630,49359714])"	no_errors
CSF2RB	1439	hgsc.bcm.edu	36	22	35652027	35652027	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	35652027	35652027	G	T	SNP	CSF2RB	NM_000395	human	genbank	54_36p	1	reviewed	missense	c.253	p.A85S	0	superfamily_Fibronectin type III	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
ELFN2	114794	hgsc.bcm.edu	36	22	36100588	36100588	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	36100588	36100588	C	A	SNP	ELFN2	NM_052906	human	genbank	54_36p	-1	validated	silent	c.933	p.L311	1	HMMSmart_FN3	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMSmart_FN3"	-	no_errors
EWSR1	2130	hgsc.bcm.edu	36	22	28013064	28013064	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	28013064	28013064	G	T	SNP	EWSR1	NM_005243	human	genbank	54_36p	1	reviewed	missense	c.734	p.G245V	1	NULL	"HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	-	no_errors
FBLN1	2192	hgsc.bcm.edu	36	22	44316768	44316782	+	In_Frame_Del	DEL	GTTTCCGCTGCGAAT	GTTTCCGCTGCGAAT	-	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	GTTTCCGCTGCGAAT	GTTTCCGCTGCGAAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	44316768	44316782	GTTTCCGCTGCGAAT	-	DEL	FBLN1	NM_006486	human	genbank	54_36p	1	reviewed	in_frame_del	c.1136_1150	p.FRCEC380in_frame_del	0.477:0.479:0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.870:1.000:1.000:0.987:1.000	"PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL"	"HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL"	"(deletion:cds_exon[44316699,44316827])"	no_errors
GTPBP1	9567	hgsc.bcm.edu	36	22	37442787	37442787	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	37442787	37442787	G	C	SNP	GTPBP1	NM_004286	human	genbank	54_36p	1	reviewed	missense	c.670	p.V224L	1	"superfamily_SSF52540,HMMPfam_GTP_EFTU"	"superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_Elong_init_C,HMMPfam_GTP_EFTU_D3"	-	no_errors
HIRA	7290	hgsc.bcm.edu	36	22	17753104	17753104	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	17753104	17753104	C	G	SNP	HIRA	NM_003325	human	genbank	54_36p	-1	reviewed	missense	c.1269	p.M423I	0.02	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_HIRA_B,HMMPfam_Hira"	-	no_errors
JOSD1	9929	hgsc.bcm.edu	36	22	37425923	37425923	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	37425923	37425923	A	-	DEL	JOSD1	NM_014876	human	genbank	54_36p	-1	validated	frame_shift_del	c.16	p.W6fs	1	NULL	HMMPfam_Josephin	"(deletion:cds_exon[37425754,37425938])"	no_errors
LDOC1L	84247	hgsc.bcm.edu	36	22	43271543	43271543	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	43271543	43271543	G	-	DEL	LDOC1L	NM_032287	human	genbank	54_36p	-1	validated	frame_shift_del	c.558	p.A187fs	0.71	NULL	NULL	"(deletion:cds_exon[43271381,43272100])"	no_errors
MAPK1	5594	hgsc.bcm.edu	36	22	20490202	20490202	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	20490202	20490202	A	T	SNP	MAPK1	NM_002745	human	genbank	54_36p	-1	reviewed	silent	c.429	p.A143	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MKL1	57591	hgsc.bcm.edu	36	22	39146900	39146900	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	22	39146900	39146900	C	-	DEL	MKL1	NM_020831	human	genbank	54_36p	-1	validated	frame_shift_del	c.778	p.A260fs	1	NULL	"HMMSmart_RPEL,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	"(deletion:cds_exon[39146797,39147050])"	no_errors
MORC2	22880	hgsc.bcm.edu	36	22	29660113	29660113	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	29660113	29660113	C	T	SNP	MORC2	NM_014941	human	genbank	54_36p	-1	provisional	silent	c.2073	p.E691	0.85	NULL	"superfamily_ATP_bd_ATPase,HMMPfam_zf-CW"	-	no_errors
MTMR3	8897	hgsc.bcm.edu	36	22	28746336	28746338	+	In_Frame_Del	DEL	GTC	GTC	-	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	GTC	GTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	28746336	28746338	GTC	-	DEL	MTMR3	NM_021090	human	genbank	54_36p	1	reviewed	in_frame_del	c.2688_2690	p.S897in_frame_del	0.000:0.000:0.036	NULL	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	"(deletion:cds_exon[28745469,28746873])"	no_errors
MTMR3	8897	hgsc.bcm.edu	36	22	28746522	28746522	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01A-01W-0615-10	TCGA-24-1544-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	28746522	28746522	C	T	SNP	MTMR3	NM_021090	human	genbank	54_36p	1	reviewed	silent	c.2874	p.C958	0.06	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,HMMSmart_SM00404,HMMPfam_Myotub-related,superfamily_FYVE/PHD zinc finger,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
MYH9	4627	hgsc.bcm.edu	36	22	35042574	35042574	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	22	35042574	35042574	G	T	SNP	MYH9	NM_002473	human	genbank	54_36p	-1	reviewed	missense	c.1314	p.D438E	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head"	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Regulator of G-protein signaling RGS"	-	no_errors
MYO18B	84700	hgsc.bcm.edu	36	22	24494303	24494303	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	22	24494303	24494303	G	C	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	missense	c.420	p.K140N	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ"	-	no_errors
NCF4	4689	hgsc.bcm.edu	36	22	35593412	35593412	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	35593412	35593412	G	A	SNP	NCF4	NM_013416	human	genbank	54_36p	1	validated	missense	c.304	p.A102T	0.98	"superfamily_PX,HMMPfam_PX,HMMSmart_PX"	"superfamily_PX,HMMPfam_PX,HMMSmart_PX,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
NEFH	4744	hgsc.bcm.edu	36	22	28215437	28215438	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	28215437	28215438	-	G	INS	NEFH	NM_021076	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1808_1809	p.A604fs	0.835:0.850	HMMPfam_DUF1388	"HMMPfam_Filament,PatternScan_IF,HMMPfam_DUF1388"	-	no_errors
PKDREJ	10343	hgsc.bcm.edu	36	22	45032793	45032793	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	45032793	45032793	G	A	SNP	PKDREJ	NM_006071	human	genbank	54_36p	-1	reviewed	silent	c.5091	p.F1697	0.02	NULL	"HMMPfam_REJ,HMMSmart_SM00303,HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
PLXNB2	23654	hgsc.bcm.edu	36	22	49063285	49063285	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	49063285	49063285	G	C	SNP	PLXNB2	NM_012401	human	genbank	54_36p	-1	validated	missense	c.2969	p.P990R	0.52	"superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	-	no_errors
PNPLA5	150379	hgsc.bcm.edu	36	22	42617026	42617027	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	42617026	42617027	-	G	INS	PNPLA5	NM_138814	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.478_477	p.E159fs	0.091:0.104	"superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin"	"superfamily_FabD/lysophospholipase-like,HMMPfam_Patatin"	-	no_errors
PPIL2	23759	hgsc.bcm.edu	36	22	20366752	20366752	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	20366752	20366752	C	T	SNP	PPIL2	NM_148176	human	genbank	54_36p	1	reviewed	silent	c.414	p.A138	1	NULL	"superfamily_SSF57850,HMMSmart_Ubox,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
RP1-199H16.1	646851	hgsc.bcm.edu	36	22	37325838	37325838	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	37325838	37325838	G	-	DEL	LOC646851	XM_929809	human	genbank	54_36p	-1	model	frame_shift_del	c.1313	p.S438fs	0	NULL	NULL	"(deletion:cds_exon[37325692,37325872])"	no_errors
SCUBE1	80274	hgsc.bcm.edu	36	22	41934105	41934105	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	41934105	41934105	C	T	SNP	SCUBE1	NM_173050	human	genbank	54_36p	-1	validated	missense	c.2651	p.R884H	1	"superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB"	"PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,HMMPfam_GCC2_GCC3,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB"	-	no_errors
SEC14L3	266629	hgsc.bcm.edu	36	22	29190822	29190822	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	29190822	29190822	T	A	SNP	SEC14L3	NM_174975	human	genbank	54_36p	-1	reviewed	missense	c.649	p.I217F	1	"HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO"	"superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO,superfamily_SSF101576"	-	no_errors
SFI1	9814	hgsc.bcm.edu	36	22	30343014	30343014	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	30343014	30343014	G	T	SNP	SFI1	NM_001007467	human	genbank	54_36p	1	validated	missense	c.3462	p.E1154D	1	NULL	NULL	-	no_errors
SLC2A11	66035	hgsc.bcm.edu	36	22	22547312	22547312	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	22547312	22547312	C	A	SNP	SLC2A11	NM_030807	human	genbank	54_36p	1	validated	missense	c.311	p.S104Y	1	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2"	-	no_errors
SLC5A1	6523	hgsc.bcm.edu	36	22	30825226	30825226	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	30825226	30825226	C	G	SNP	SLC5A1	NM_000343	human	genbank	54_36p	1	validated	nonsense	c.1337	p.S446*	1	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
SMARCB1	6598	hgsc.bcm.edu	36	22	22505823	22505823	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	22505823	22505823	C	T	SNP	SMARCB1	NM_003073	human	genbank	54_36p	1	reviewed	missense	c.1051	p.P351S	1	HMMPfam_SNF5	HMMPfam_SNF5	-	no_errors
SMARCB1	6598	hgsc.bcm.edu	36	22	22505875	22505875	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	22	22505875	22505875	A	G	SNP	SMARCB1	NM_003073	human	genbank	54_36p	1	reviewed	missense	c.1103	p.Q368R	1	HMMPfam_SNF5	HMMPfam_SNF5	-	no_errors
SMARCB1	6598	hgsc.bcm.edu	36	22	22505888	22505888	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	22505888	22505888	G	A	SNP	SMARCB1	NM_003073	human	genbank	54_36p	1	reviewed	silent	c.1116	p.T372	0.98	HMMPfam_SNF5	HMMPfam_SNF5	-	no_errors
SMC1B	27127	hgsc.bcm.edu	36	22	44126997	44126997	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	22	44126997	44126997	G	C	SNP	SMC1B	NM_148674	human	genbank	54_36p	-1	validated	missense	c.3423	p.H1141Q	1	"superfamily_SSF52540,HMMPfam_SMC_N"	"superfamily_SSF52540,HMMPfam_SMC_N,superfamily_SMC_hinge,HMMPfam_SMC_hinge"	-	no_errors
SMC1B	27127	hgsc.bcm.edu	36	22	44176884	44176884	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	44176884	44176884	C	G	SNP	SMC1B	NM_148674	human	genbank	54_36p	-1	validated	missense	c.847	p.E283Q	1	"HMMPfam_SMC_N,superfamily_SSF52540"	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540"	-	no_errors
SMTN	6525	hgsc.bcm.edu	36	22	29817798	29817799	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	22	29817798	29817799	-	C	INS	SMTN	NM_134270	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1597_1598	p.S536fs	1.000:0.998	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
SREBF2	6721	hgsc.bcm.edu	36	22	40599771	40599771	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	40599771	40599771	C	G	SNP	SREBF2	NM_004599	human	genbank	54_36p	1	reviewed	silent	c.891	p.T297	1	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
TBC1D22A	25771	hgsc.bcm.edu	36	22	45811697	45811697	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	45811697	45811697	A	C	SNP	TBC1D22A	NM_014346	human	genbank	54_36p	1	provisional	missense	c.1268	p.N423T	1	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p"	"PatternScan_AA_TRNA_LIGASE_I,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
TBX1	6899	hgsc.bcm.edu	36	22	18132518	18132518	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	18132518	18132518	T	C	SNP	TBX1	NM_080647	human	genbank	54_36p	1	reviewed	missense	c.722	p.F241S	1	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box"	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TMPRSS6	164656	hgsc.bcm.edu	36	22	35824418	35824418	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	22	35824418	35824418	G	T	SNP	TMPRSS6	NM_153609	human	genbank	54_36p	-1	reviewed	missense	c.347	p.A116D	0.99	superfamily_SEA domain	###############################################################################################################################################################################################################################################################	-	no_errors
TOM1	10043	hgsc.bcm.edu	36	22	34047995	34047995	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	22	34047995	34047995	A	C	SNP	TOM1	NM_005488	human	genbank	54_36p	1	reviewed	missense	c.181	p.N61H	1	"superfamily_ENTH_VHS,HMMPfam_VHS,HMMSmart_VHS"	"superfamily_ENTH_VHS,HMMPfam_VHS,HMMSmart_VHS,superfamily_SSF89009,HMMPfam_GAT"	-	no_errors
TOM1	10043	hgsc.bcm.edu	36	22	34060380	34060380	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	34060380	34060380	G	A	SNP	TOM1	NM_005488	human	genbank	54_36p	1	reviewed	missense	c.1087	p.E363K	1	NULL	"HMMPfam_VHS,HMMPfam_GAT,superfamily_ENTH_VHS,HMMSmart_VHS,superfamily_SSF89009"	-	no_errors
TRIOBP	11078	hgsc.bcm.edu	36	22	36450122	36450124	+	In_Frame_Del	DEL	CCT	CCT	-	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	CCT	CCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	36450122	36450124	CCT	-	DEL	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	in_frame_del	c.1613_1615	p.S540in_frame_del	0.020:0.014:0.022	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"(deletion:cds_exon[36449138,36452456])"	no_errors
WBP2NL	164684	hgsc.bcm.edu	36	22	40752961	40752961	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	40752961	40752961	G	A	SNP	WBP2NL	NM_152613	human	genbank	54_36p	1	validated	missense	c.760	p.A254T	0.01	NULL	HMMPfam_WWbp	-	no_errors
XPNPEP3	63929	hgsc.bcm.edu	36	22	39652372	39652372	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	39652372	39652372	G	C	SNP	XPNPEP3	NM_022098	human	genbank	54_36p	1	validated	missense	c.1511	p.S504T	0.84	superfamily_Creatinase/aminopeptidase	"superfamily_Creatinase/prolidase N-terminal domain,HMMPfam_AMP_N,superfamily_Creatinase/aminopeptidase,HMMPfam_Peptidase_M24"	-	no_errors
ZC3H7B	23264	hgsc.bcm.edu	36	22	40065092	40065092	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	22	40065092	40065092	C	G	SNP	ZC3H7B	NM_017590	human	genbank	54_36p	1	reviewed	nonsense	c.767	p.S256*	0.98	NULL	"superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF90229,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_ZnF_C2H2"	-	no_errors
ZDHHC8	29801	hgsc.bcm.edu	36	22	18506823	18506823	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	18506823	18506823	G	T	SNP	ZDHHC8	NM_013373	human	genbank	54_36p	1	validated	missense	c.211	p.G71C	0.99	NULL	HMMPfam_zf-DHHC	-	no_errors
ZMAT5	55954	hgsc.bcm.edu	36	22	28464344	28464344	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	22	28464344	28464344	G	A	SNP	ZMAT5	NM_001003692	human	genbank	54_36p	-1	validated	missense	c.358	p.R120W	1	NULL	"HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
NOC2L	26155	broad.mit.edu	36	1	882497	882497	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	882497	882497	A	G	SNP	NOC2L	NM_015658	human	genbank	54_36p	-1	validated	missense	c.199	p.S67P	0.99	NULL	HMMPfam_Noc2	-	no_errors
UBE2J2	118424	broad.mit.edu	36	1	1182541	1182541	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	1182541	1182541	T	A	SNP	UBE2J2	NM_194315	human	genbank	54_36p	-1	reviewed	missense	c.233	p.H78L	1	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con"	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con"	-	no_errors
CCNL2	81669	broad.mit.edu	36	1	1324415	1324415	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	1324415	1324415	C	T	SNP	CCNL2	NM_030937	human	genbank	54_36p	-1	validated	silent	c.135	p.V45	1	HMMPfam_Cyclin_N	"HMMPfam_Cyclin_N,superfamily_Cyclin-like,HMMSmart_SM00385"	-	no_errors
NADK	65220	broad.mit.edu	36	1	1675976	1675976	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	1675976	1675976	C	T	SNP	NADK	NM_023018	human	genbank	54_36p	-1	validated	missense	c.710	p.R237Q	1	"superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase"	"superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase"	-	no_errors
KIAA1751	85452	broad.mit.edu	36	1	1887722	1887722	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	1887722	1887722	A	G	SNP	KIAA1751	NM_001080484	human	genbank	54_36p	-1	predicted	missense	c.1349	p.L450S	0.03	NULL	NULL	-	no_errors
GABRD	2563	broad.mit.edu	36	1	1951290	1951290	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	1951290	1951290	G	C	SNP	GABRD	NM_000815	human	genbank	54_36p	1	reviewed	silent	c.1068	p.V356	1	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRD	2563	broad.mit.edu	36	1	1951512	1951512	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	1951512	1951512	C	T	SNP	GABRD	NM_000815	human	genbank	54_36p	1	reviewed	silent	c.1290	p.Y430	0.8	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM"	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
PLCH2	9651	broad.mit.edu	36	1	2410548	2410548	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	2410548	2410548	C	G	SNP	PLCH2	NM_014638	human	genbank	54_36p	1	provisional	missense	c.1278	p.I426M	0.02	"HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases"	###############################################################################################################################################################################################################################################################	-	no_errors
PANK4	55229	broad.mit.edu	36	1	2439497	2439497	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	2439497	2439497	T	A	SNP	PANK4	NM_018216	human	genbank	54_36p	-1	reviewed	missense	c.1184	p.E395V	0.9	NULL	"HMMPfam_Fumble,superfamily_Hypothetical protein At2g17340,HMMPfam_DUF89"	-	no_errors
PANK4	55229	broad.mit.edu	36	1	2442107	2442107	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	2442107	2442107	T	G	SNP	PANK4	NM_018216	human	genbank	54_36p	-1	reviewed	missense	c.521	p.D174A	1	HMMPfam_Fumble	"HMMPfam_DUF89,superfamily_Hypothetical protein At2g17340,HMMPfam_Fumble"	-	no_errors
MMEL1	79258	broad.mit.edu	36	1	2515210	2515210	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	2515210	2515210	C	A	SNP	MMEL1	NM_033467	human	genbank	54_36p	-1	reviewed	missense	c.1743	p.Q581H	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
ACTRT2	140625	broad.mit.edu	36	1	2928909	2928909	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	2928909	2928909	C	G	SNP	ACTRT2	NM_080431	human	genbank	54_36p	1	reviewed	missense	c.799	p.Q267E	0	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE"	-	no_errors
PRDM16	63976	broad.mit.edu	36	1	3318574	3318574	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	3318574	3318574	C	T	SNP	PRDM16	NM_022114	human	genbank	54_36p	1	reviewed	silent	c.1953	p.G651	0.41	NULL	"superfamily_SET domain,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PRDM16	63976	broad.mit.edu	36	1	3318830	3318830	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	3318830	3318830	C	G	SNP	PRDM16	NM_022114	human	genbank	54_36p	1	reviewed	missense	c.2209	p.L737V	1	NULL	"HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_SET domain"	-	no_errors
LRRC47	57470	broad.mit.edu	36	1	3687746	3687746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	3687746	3687746	C	G	SNP	LRRC47	NM_020710	human	genbank	54_36p	-1	validated	missense	c.1518	p.M506I	1	HMMPfam_B3_4	"superfamily_SSF52047,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMPfam_B3_4"	-	no_errors
AJAP1	55966	broad.mit.edu	36	1	4671908	4671908	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	4671908	4671908	G	A	SNP	AJAP1	NM_001042478	human	genbank	54_36p	1	validated	missense	c.118	p.A40T	0.04	NULL	PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
NPHP4	261734	broad.mit.edu	36	1	5859763	5859763	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	5859763	5859763	C	T	SNP	NPHP4	NM_015102	human	genbank	54_36p	-1	reviewed	missense	c.2794	p.G932S	0	NULL	NULL	-	no_errors
NPHP4	261734	broad.mit.edu	36	1	5930817	5930817	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	5930817	5930817	C	G	SNP	NPHP4	NM_015102	human	genbank	54_36p	-1	reviewed	missense	c.892	p.V298L	1	NULL	NULL	-	no_errors
CHD5	26038	broad.mit.edu	36	1	6109327	6109328	+	Frame_Shift_Ins	INS	-	AT	-	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	6109327	6109328	-	AT	INS	CHD5	NM_015557	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.3970_3969	p.L1323fs	1.000:0.998	HMMPfam_DUF1087	###############################################################################################################################################################################################################################################################	-	no_errors
CHD5	26038	broad.mit.edu	36	1	6111605	6111605	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	6111605	6111605	T	C	SNP	CHD5	NM_015557	human	genbank	54_36p	-1	provisional	missense	c.3499	p.M1167V	1	superfamily_SSF52540	###############################################################################################################################################################################################################################################################	-	no_errors
RNF207	388591	broad.mit.edu	36	1	6193033	6193033	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	6193033	6193033	G	T	SNP	RNF207	NM_207396	human	genbank	54_36p	1	validated	missense	c.890	p.C297F	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain"	-	no_errors
HES2	54626	broad.mit.edu	36	1	6401937	6401937	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	6401937	6401937	C	T	SNP	HES2	NM_019089	human	genbank	54_36p	-1	validated	silent	c.192	p.V64	1	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_Hairy_orange,HMMSmart_SM00511"	-	no_errors
ESPN	83715	broad.mit.edu	36	1	6423026	6423026	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	6423026	6423026	A	G	SNP	ESPN	NM_031475	human	genbank	54_36p	1	validated	missense	c.614	p.D205G	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_WH2,HMMSmart_SM00246"	-	no_errors
ZBTB48	3104	broad.mit.edu	36	1	6569905	6569905	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	6569905	6569905	G	A	SNP	ZBTB48	NM_005341	human	genbank	54_36p	1	validated	missense	c.1191	p.M397I	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
DNAJC11	55735	broad.mit.edu	36	1	6619976	6619976	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	6619976	6619976	C	T	SNP	DNAJC11	NM_018198	human	genbank	54_36p	-1	validated	missense	c.1393	p.V465I	0.98	NULL	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1"	-	no_errors
CAMTA1	23261	broad.mit.edu	36	1	7715179	7715179	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	7715179	7715179	A	C	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	missense	c.2999	p.K1000T	1	NULL	"HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ"	-	no_errors
CAMTA1	23261	broad.mit.edu	36	1	7733854	7733854	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	7733854	7733854	T	A	SNP	CAMTA1	NM_015215	human	genbank	54_36p	1	validated	silent	c.4698	p.L1566	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TNFRSF9	3604	broad.mit.edu	36	1	7922616	7922616	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	7922616	7922616	A	T	SNP	TNFRSF9	NM_001561	human	genbank	54_36p	-1	reviewed	missense	c.26	p.V9E	0.02	NULL	"HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,superfamily_SSF57586"	-	no_errors
ERRFI1	54206	broad.mit.edu	36	1	7996687	7996687	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	7996687	7996687	T	C	SNP	ERRFI1	NM_018948	human	genbank	54_36p	-1	validated	missense	c.559	p.T187A	0.02	NULL	HMMPfam_GTPase_binding	-	no_errors
SLC45A1	50651	broad.mit.edu	36	1	8313185	8313185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	8313185	8313185	G	A	SNP	SLC45A1	NM_001080397	human	genbank	54_36p	1	provisional	missense	c.1045	p.G349S	1	HMMPfam_MFS_1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC45A1	50651	broad.mit.edu	36	1	8322189	8322189	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	8322189	8322189	C	T	SNP	SLC45A1	NM_001080397	human	genbank	54_36p	1	provisional	silent	c.1824	p.F608	1	superfamily_MFS general substrate transporter	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
RERE	473	broad.mit.edu	36	1	8341536	8341536	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	8341536	8341536	G	A	SNP	RERE	NM_001042681	human	genbank	54_36p	-1	reviewed	missense	c.3646	p.R1216C	1	HMMPfam_Atrophin-1	"HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1"	-	no_errors
RERE	473	broad.mit.edu	36	1	8342455	8342456	+	In_Frame_Ins	INS	-	CTCCTT	-	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	8342455	8342456	-	CTCCTT	INS	RERE	NM_001042681	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.3574_3573	p.1191in_frame_insKE	0.997:1.000	HMMPfam_Atrophin-1	"HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1"	-	no_errors
RERE	473	broad.mit.edu	36	1	8477741	8477741	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	8477741	8477741	C	T	SNP	RERE	NM_001042681	human	genbank	54_36p	-1	reviewed	missense	c.1073	p.R358Q	1	NULL	"HMMPfam_GATA,HMMSmart_SM00401,HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_Atrophin-1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
CA6	765	broad.mit.edu	36	1	8939918	8939918	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	8939918	8939918	G	C	SNP	CA6	NM_001215	human	genbank	54_36p	1	reviewed	missense	c.395	p.R132T	0.18	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
CA6	765	broad.mit.edu	36	1	8941642	8941642	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	8941642	8941642	C	T	SNP	CA6	NM_001215	human	genbank	54_36p	1	reviewed	silent	c.495	p.F165	0	"HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd"	"HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1"	-	no_errors
H6PD	9563	broad.mit.edu	36	1	9247369	9247372	+	Frame_Shift_Del	DEL	GTCC	-	GTCC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GTCC	GTCC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	9247369	9247372	GTCC	-	DEL	H6PD	NM_004285	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2230_2233	p.V744fs	0.965:0.979:0.939:0.991	"superfamily_SSF100950,HMMPfam_Glucosamine_iso"	"superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C,superfamily_SSF100950,HMMPfam_Glucosamine_iso"	"(deletion:cds_exon[9246155,9247515])"	no_errors
PGD	5226	broad.mit.edu	36	1	10400053	10400053	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	10400053	10400053	C	G	SNP	PGD	NM_002631	human	genbank	54_36p	1	reviewed	missense	c.1009	p.Q337E	1	"superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_6PGD"	"HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_6PGD,PatternScan_6PGD"	-	no_errors
CASZ1	54897	broad.mit.edu	36	1	10627589	10627589	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	10627589	10627589	G	A	SNP	CASZ1	NM_001079843	human	genbank	54_36p	-1	validated	silent	c.3840	p.F1280	1	NULL	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CASZ1	54897	broad.mit.edu	36	1	10636042	10636042	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	10636042	10636042	G	C	SNP	CASZ1	NM_001079843	human	genbank	54_36p	-1	validated	missense	c.2659	p.P887A	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
MASP2	10747	broad.mit.edu	36	1	11009954	11009954	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11009954	11009954	T	A	SNP	MASP2	NM_006610	human	genbank	54_36p	-1	reviewed	missense	c.1636	p.S546C	0	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	###############################################################################################################################################################################################################################################################	-	no_errors
MASP2	10747	broad.mit.edu	36	1	11020432	11020432	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11020432	11020432	C	G	SNP	MASP2	NM_006610	human	genbank	54_36p	-1	reviewed	missense	c.913	p.A305P	0.97	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	###############################################################################################################################################################################################################################################################	-	no_errors
MTOR	2475	broad.mit.edu	36	1	11195525	11195525	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11195525	11195525	C	T	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.3313	p.A1105T	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
MTOR	2475	broad.mit.edu	36	1	11230470	11230470	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	11230470	11230470	A	T	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.1109	p.F370Y	1	superfamily_ARM-type_fold	"HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452"	-	no_errors
MTOR	2475	broad.mit.edu	36	1	11241933	11241933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	11241933	11241933	C	A	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.121	p.A41S	1	superfamily_ARM-type_fold	"HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452"	-	no_errors
PTCHD2	57540	broad.mit.edu	36	1	11483988	11483988	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11483988	11483988	C	T	SNP	PTCHD2	NM_020780	human	genbank	54_36p	1	validated	missense	c.352	p.R118C	1	NULL	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
FBXO44	93611	broad.mit.edu	36	1	11640949	11640949	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11640949	11640949	G	A	SNP	FBXO44	NM_001014765	human	genbank	54_36p	1	reviewed	missense	c.304	p.D102N	0.94	"HMMPfam_FBA,superfamily_Galactose-binding domain-like"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_FBA,superfamily_Galactose-binding domain-like"	-	no_errors
NPPA	4878	broad.mit.edu	36	1	11828658	11828658	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11828658	11828658	A	G	SNP	NPPA	NM_006172	human	genbank	54_36p	-1	provisional	missense	c.451	p.Y151H	0.99	NULL	"HMMPfam_ANP,HMMSmart_NAT_PEP,PatternScan_NATRIURETIC_PEPTIDE"	-	no_errors
NPPB	4879	broad.mit.edu	36	1	11840951	11840951	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11840951	11840951	G	A	SNP	NPPB	NM_002521	human	genbank	54_36p	-1	reviewed	missense	c.295	p.R99W	0.02	HMMPfam_ANP	"HMMPfam_ANP,HMMSmart_NAT_PEP,PatternScan_NATRIURETIC_PEPTIDE"	-	no_errors
KIAA2013	90231	broad.mit.edu	36	1	11905787	11905787	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11905787	11905787	C	T	SNP	KIAA2013	NM_138346	human	genbank	54_36p	-1	provisional	silent	c.1380	p.G460	0.99	HMMPfam_DUF2152	HMMPfam_DUF2152	-	no_errors
PLOD1	5351	broad.mit.edu	36	1	11941249	11941249	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	11941249	11941249	C	T	SNP	PLOD1	NM_000302	human	genbank	54_36p	1	reviewed	silent	c.933	p.L311	0.07	NULL	"HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE"	-	no_errors
TNFRSF8	943	broad.mit.edu	36	1	12087120	12087120	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	12087120	12087120	T	C	SNP	TNFRSF8	NM_001243	human	genbank	54_36p	1	reviewed	silent	c.366	p.C122	1	"superfamily_TNF receptor-like,HMMSmart_SM00208"	"HMMPfam_TNFR_c6,HMMSmart_SM00208,superfamily_TNF receptor-like,PatternScan_TNFR_NGFR_1"	-	no_errors
VPS13D	55187	broad.mit.edu	36	1	12255739	12255739	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	12255739	12255739	T	A	SNP	VPS13D	NM_015378	human	genbank	54_36p	1	reviewed	silent	c.2196	p.V732	1	NULL	"superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_DUF1162"	-	no_errors
VPS13D	55187	broad.mit.edu	36	1	12325666	12325666	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	12325666	12325666	A	C	SNP	VPS13D	NM_015378	human	genbank	54_36p	1	reviewed	missense	c.8856	p.E2952D	1	NULL	"HMMPfam_UBA,superfamily_UBA-like,HMMPfam_DUF1162,HMMSmart_SM00165"	-	no_errors
VPS13D	55187	broad.mit.edu	36	1	12397828	12397828	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	12397828	12397828	C	T	SNP	VPS13D	NM_015378	human	genbank	54_36p	1	reviewed	silent	c.12132	p.F4044	1	NULL	"HMMPfam_UBA,superfamily_UBA-like,HMMPfam_DUF1162,HMMSmart_SM00165"	-	no_errors
VPS13D	55187	broad.mit.edu	36	1	12480139	12480139	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	12480139	12480139	A	G	SNP	VPS13D	NM_015378	human	genbank	54_36p	1	reviewed	splice_site	c.12663-2	e67-2	0.96	-	-	-	no_errors
AADACL4	343066	broad.mit.edu	36	1	12648632	12648632	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	12648632	12648632	A	C	SNP	AADACL4	NM_001013630	human	genbank	54_36p	1	provisional	missense	c.523	p.K175Q	0.96	"superfamily_SSF53474,HMMPfam_Abhydrolase_3"	"PatternScan_LIPASE_GDXG_HIS,PatternScan_LIPASE_GDXG_SER,superfamily_SSF53474,HMMPfam_Abhydrolase_3"	-	no_errors
C1orf158	93190	broad.mit.edu	36	1	12741948	12741948	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	12741948	12741948	G	C	SNP	C1orf158	NM_152290	human	genbank	54_36p	1	predicted	missense	c.344	p.R115P	0.08	NULL	NULL	-	no_errors
PRAMEF1	65121	broad.mit.edu	36	1	12777122	12777122	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	12777122	12777122	A	T	SNP	PRAMEF1	NM_023013	human	genbank	54_36p	1	provisional	silent	c.759	p.G253	0	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF4	400735	broad.mit.edu	36	1	12862293	12862293	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	12862293	12862293	C	G	SNP	PRAMEF4	NM_001009611	human	genbank	54_36p	-1	validated	missense	c.1096	p.D366H	0.03	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF10	343071	broad.mit.edu	36	1	12877151	12877151	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	12877151	12877151	G	T	SNP	PRAMEF10	NM_001039361	human	genbank	54_36p	-1	validated	missense	c.719	p.A240D	0	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRAMEF18	391003	broad.mit.edu	36	1	13347702	13347712	+	Frame_Shift_Del	DEL	CTCAAGACGGA	-	CTCAAGACGGA	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	CTCAAGACGGA	CTCAAGACGGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	13347702	13347712	CTCAAGACGGA	-	DEL	PRAMEF18	NM_001099850	human	genbank	54_36p	-1	validated	frame_shift_del	c.1014_1004	p.I335fs	0.014:0.007:0.006:0.003:0.002:0.003:0.003:0.002:0.000:0.000:0.000	superfamily_SSF52047	superfamily_SSF52047	"(deletion:cds_exon[13347276,13347849])"	no_errors
PDPN	10630	broad.mit.edu	36	1	13809526	13809526	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	13809526	13809526	G	C	SNP	PDPN	NM_006474	human	genbank	54_36p	1	reviewed	missense	c.487	p.E163Q	0.01	HMMPfam_Podoplanin	HMMPfam_Podoplanin	-	no_errors
PDPN	10630	broad.mit.edu	36	1	13809592	13809592	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	13809592	13809592	T	C	SNP	PDPN	NM_006474	human	genbank	54_36p	1	reviewed	missense	c.553	p.S185P	0	HMMPfam_Podoplanin	HMMPfam_Podoplanin	-	no_errors
CELA2A	63036	broad.mit.edu	36	1	15666565	15666565	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	15666565	15666565	A	G	SNP	ELA2A	NM_033440	human	genbank	54_36p	1	reviewed	missense	c.737	p.Y246C	0.96	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
PLEKHM2	23207	broad.mit.edu	36	1	15927387	15927388	+	Missense_Mutation	DNP	GC	GC	TG	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	15927387	15927388	GC	TG	DNP	PLEKHM2	NM_015164	human	genbank	54_36p	1	validated	missense	c.2178_2179	p.Q727E	1.000:1.000	NULL	"HMMPfam_RUN,HMMSmart_SM00593,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
PLEKHM2	23207	broad.mit.edu	36	1	15929708	15929708	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	15929708	15929708	C	G	SNP	PLEKHM2	NM_015164	human	genbank	54_36p	1	validated	missense	c.2612	p.P871R	0.16	superfamily_PH domain-like	"HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RUN,HMMSmart_SM00593,PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_PH domain-like"	-	no_errors
SPEN	23013	broad.mit.edu	36	1	16131779	16131779	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	16131779	16131779	G	A	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	missense	c.6457	p.V2153M	0	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC"	-	no_errors
SPEN	23013	broad.mit.edu	36	1	16132924	16132924	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	16132924	16132924	G	C	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	silent	c.7602	p.L2534	1	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928"	-	no_errors
SPEN	23013	broad.mit.edu	36	1	16133684	16133684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	16133684	16133684	G	C	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	missense	c.8362	p.G2788R	0.99	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928"	-	no_errors
SPEN	23013	broad.mit.edu	36	1	16133869	16133869	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;ManualReview;Capture			Illumina GAIIx	1	16133869	16133869	G	A	SNP	SPEN	NM_015001	human	genbank	54_36p	1	reviewed	silent	c.8547	p.Q2849	1	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928"	-	no_errors
ZBTB17	7709	broad.mit.edu	36	1	16141745	16141745	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	16141745	16141745	G	C	SNP	ZBTB17	NM_003443	human	genbank	54_36p	-1	validated	missense	c.1904	p.T635S	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZBTB17	7709	broad.mit.edu	36	1	16146090	16146090	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	16146090	16146090	G	C	SNP	ZBTB17	NM_003443	human	genbank	54_36p	-1	validated	silent	c.321	p.A107	1	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	"HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CLCNKA	1187	broad.mit.edu	36	1	16232309	16232309	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	16232309	16232309	A	C	SNP	CLCNKA	NM_004070	human	genbank	54_36p	1	reviewed	silent	c.1987	p.R663	0.92	HMMPfam_CBS	"superfamily_Cl-channel_core,HMMPfam_Voltage_CLC,superfamily_SSF54631,HMMPfam_CBS,HMMSmart_CBS"	-	no_errors
CLCNKB	1188	broad.mit.edu	36	1	16247118	16247118	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	16247118	16247118	G	A	SNP	CLCNKB	NM_000085	human	genbank	54_36p	1	validated	missense	c.490	p.G164R	1	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC"	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116"	-	no_errors
CLCNKB	1188	broad.mit.edu	36	1	16251279	16251279	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	16251279	16251279	G	A	SNP	CLCNKB	NM_000085	human	genbank	54_36p	1	validated	splice_site	c.1409-1	e14-1	1	-	-	-	no_errors
EPHA2	1969	broad.mit.edu	36	1	16324359	16324359	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	16324359	16324359	G	A	SNP	EPHA2	NM_004431	human	genbank	54_36p	-1	reviewed	missense	c.2869	p.R957C	1	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGEF19	128272	broad.mit.edu	36	1	16407167	16407167	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	16407167	16407167	G	C	SNP	ARHGEF19	NM_153213	human	genbank	54_36p	-1	provisional	missense	c.553	p.R185G	0.18	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1"	-	no_errors
FBXO42	54455	broad.mit.edu	36	1	16450213	16450213	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	16450213	16450213	C	A	SNP	FBXO42	NM_018994	human	genbank	54_36p	-1	provisional	missense	c.1693	p.A565S	1	NULL	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_Gal_oxid_central,HMMPfam_Kelch_2,HMMPfam_Kelch_1"	-	no_errors
NBPF1	55672	broad.mit.edu	36	1	16780516	16780516	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	16780516	16780516	T	C	SNP	NBPF1	NM_017940	human	genbank	54_36p	-1	predicted	silent	c.1365	p.E455	0	HMMPfam_DUF1220	HMMPfam_DUF1220	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CROCC	9696	broad.mit.edu	36	1	17123477	17123477	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	17123477	17123477	G	C	SNP	CROCC	NM_014675	human	genbank	54_36p	1	validated	missense	c.267	p.E89D	1	NULL	superfamily_Prefoldin	-	no_errors
CROCC	9696	broad.mit.edu	36	1	17154522	17154522	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17154522	17154522	A	G	SNP	CROCC	NM_014675	human	genbank	54_36p	1	validated	silent	c.3594	p.A1198	0.04	NULL	superfamily_Prefoldin	-	no_errors
ATP13A2	23400	broad.mit.edu	36	1	17199516	17199517	+	Missense_Mutation	DNP	AT	AT	GA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17199516	17199517	AT	GA	DNP	ATP13A2	NM_022089	human	genbank	54_36p	-1	reviewed	missense	c.806_805	p.I269S	0.926:0.011	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP13A2	23400	broad.mit.edu	36	1	17203442	17203442	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17203442	17203442	C	T	SNP	ATP13A2	NM_022089	human	genbank	54_36p	-1	reviewed	missense	c.529	p.E177K	0.96	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PADI1	29943	broad.mit.edu	36	1	17431991	17431991	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17431991	17431991	G	A	SNP	PADI1	NM_013358	human	genbank	54_36p	1	reviewed	missense	c.1252	p.V418I	1	"HMMPfam_PAD,superfamily_Pentein"	"HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein"	-	no_errors
PADI3	51702	broad.mit.edu	36	1	17466930	17466930	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	17466930	17466930	A	G	SNP	PADI3	NM_016233	human	genbank	54_36p	1	reviewed	missense	c.538	p.M180V	1	"HMMPfam_PAD_M,superfamily_PAD_central"	"HMMPfam_PAD_N,superfamily_Cupredoxin,HMMPfam_PAD_M,superfamily_PAD_central,HMMPfam_PAD,superfamily_SSF55909"	-	no_errors
PADI6	353238	broad.mit.edu	36	1	17594100	17594100	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17594100	17594100	G	A	SNP	PADI6	NM_207421	human	genbank	54_36p	1	validated	missense	c.1405	p.G469S	0.53	NULL	"HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PADI6	353238	broad.mit.edu	36	1	17600483	17600483	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17600483	17600483	G	C	SNP	PADI6	ENST00000358481	human	ensembl	54_36p	1	known	missense	c.2044	p.V682L	0.98	"HMMPfam_PAD,superfamily_Pentein"	"superfamily_Cupredoxins,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,superfamily_Pentein"	-	no_errors
ARHGEF10L	55160	broad.mit.edu	36	1	17815273	17815273	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17815273	17815273	A	T	SNP	ARHGEF10L	NM_018125	human	genbank	54_36p	1	validated	missense	c.824	p.K275M	1	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_WD40 repeat-like"	-	no_errors
ARHGEF10L	55160	broad.mit.edu	36	1	17833633	17833633	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17833633	17833633	T	G	SNP	ARHGEF10L	NM_018125	human	genbank	54_36p	1	validated	silent	c.1734	p.P578	0.99	superfamily_PH domain-like	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_WD40 repeat-like,superfamily_PH domain-like"	-	no_errors
ARHGEF10L	55160	broad.mit.edu	36	1	17834064	17834064	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17834064	17834064	C	T	SNP	ARHGEF10L	NM_018125	human	genbank	54_36p	1	validated	silent	c.1893	p.G631	0.96	superfamily_PH domain-like	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_WD40 repeat-like,superfamily_PH domain-like"	-	no_errors
ARHGEF10L	55160	broad.mit.edu	36	1	17886718	17886718	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	17886718	17886718	G	A	SNP	ARHGEF10L	NM_018125	human	genbank	54_36p	1	validated	missense	c.3073	p.G1025S	1	superfamily_WD40 repeat-like	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_WD40 repeat-like,superfamily_PH domain-like"	-	no_errors
ACTL8	81569	broad.mit.edu	36	1	18024900	18024900	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	18024900	18024900	C	T	SNP	ACTL8	NM_030812	human	genbank	54_36p	1	provisional	nonsense	c.400	p.Q134*	1	"superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN"	"superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN"	-	no_errors
IGSF21	84966	broad.mit.edu	36	1	18564705	18564705	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	18564705	18564705	C	A	SNP	IGSF21	NM_032880	human	genbank	54_36p	1	provisional	missense	c.942	p.D314E	1	superfamily_SSF48726	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	-	no_errors
IGSF21	84966	broad.mit.edu	36	1	18575958	18575958	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	18575958	18575958	C	T	SNP	IGSF21	NM_032880	human	genbank	54_36p	1	provisional	silent	c.1179	p.D393	0.95	"HMMSmart_IG,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726"	-	no_errors
UBR4	23352	broad.mit.edu	36	1	19293085	19293085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	19293085	19293085	C	A	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.13882	p.V4628L	0.62	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	broad.mit.edu	36	1	19314717	19314717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	19314717	19314717	G	T	SNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	missense	c.10825	p.P3609T	1	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
UBR4	23352	broad.mit.edu	36	1	19316315	19316316	+	Nonsense_Mutation	DNP	CC	CC	AT	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	19316315	19316316	CC	AT	DNP	UBR4	NM_020765	human	genbank	54_36p	-1	validated	nonsense	c.10810_10809	p.EL3604*	1.000:1.000	superfamily_ARM repeat	"HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
MRTO4	51154	broad.mit.edu	36	1	19457617	19457617	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	19457617	19457617	G	A	SNP	MRTO4	NM_016183	human	genbank	54_36p	1	reviewed	missense	c.553	p.E185K	1	NULL	HMMPfam_Ribosomal_L10	-	no_errors
AKR7L	246181	broad.mit.edu	36	1	19467716	19467716	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	19467716	19467716	G	A	SNP	AKR7L	NM_201252	human	genbank	54_36p	-1	reviewed	silent	c.237	p.G79	0.15	superfamily_Aldo/ket_red	superfamily_Aldo/ket_red	-	no_errors
AKR7A3	22977	broad.mit.edu	36	1	19483139	19483139	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	19483139	19483139	C	A	SNP	AKR7A3	NM_012067	human	genbank	54_36p	-1	validated	missense	c.772	p.A258S	0.95	superfamily_Aldo/ket_red	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red"	-	no_errors
CAPZB	832	broad.mit.edu	36	1	19618803	19618803	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	19618803	19618803	T	A	SNP	CAPZB	NM_004930	human	genbank	54_36p	-1	reviewed	missense	c.32	p.D11V	1	"superfamily_Subunits of heterodimeric actin filament capping protein Capz,HMMPfam_F_actin_cap_B"	"superfamily_Subunits of heterodimeric actin filament capping protein Capz,HMMPfam_F_actin_cap_B,PatternScan_F_ACTIN_CAPPING_BETA"	-	no_errors
NBL1	4681	broad.mit.edu	36	1	19854233	19854233	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	19854233	19854233	C	T	SNP	NBL1	NM_182744	human	genbank	54_36p	1	reviewed	silent	c.228	p.T76	1	"HMMPfam_DAN,HMMSmart_CT"	"HMMPfam_DAN,HMMSmart_CT"	-	no_errors
HTR6	3362	broad.mit.edu	36	1	19878209	19878209	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	19878209	19878209	C	T	SNP	HTR6	NM_000871	human	genbank	54_36p	1	provisional	missense	c.1084	p.P362S	0.9	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PLA2G2F	64600	broad.mit.edu	36	1	20338596	20338596	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	20338596	20338596	G	T	SNP	PLA2G2F	NM_022819	human	genbank	54_36p	1	validated	missense	c.89	p.G30V	0.07	NULL	"HMMSmart_PA2c,HMMPfam_Phospholip_A2_1,superfamily_PhospholipaseA2,PatternScan_PA2_HIS"	-	no_errors
PINK1	65018	broad.mit.edu	36	1	20848267	20848267	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	20848267	20848267	G	A	SNP	PINK1	NM_032409	human	genbank	54_36p	1	reviewed	missense	c.1444	p.V482M	0	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
KIF17	57576	broad.mit.edu	36	1	20897531	20897531	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	20897531	20897531	C	G	SNP	KIF17	NM_020816	human	genbank	54_36p	-1	validated	missense	c.1161	p.Q387H	0.01	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
EIF4G3	8672	broad.mit.edu	36	1	21050446	21050446	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	21050446	21050446	G	C	SNP	EIF4G3	NM_003760	human	genbank	54_36p	-1	validated	missense	c.3496	p.Q1166E	1	NULL	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,superfamily_PH domain-like,HMMSmart_SM00515,HMMPfam_W2"	-	no_errors
ECE1	1889	broad.mit.edu	36	1	21419087	21419087	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	21419087	21419087	C	T	SNP	ECE1	NM_001397	human	genbank	54_36p	-1	validated	missense	c.2261	p.R754H	0.98	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,PatternScan_ZINC_PROTEASE"	-	no_errors
ECE1	1889	broad.mit.edu	36	1	21444134	21444134	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	21444134	21444134	A	C	SNP	ECE1	NM_001397	human	genbank	54_36p	-1	validated	missense	c.1213	p.F405V	1	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (zincins) catalytic domain"	"PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ALPL	249	broad.mit.edu	36	1	21762289	21762289	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	21762289	21762289	G	A	SNP	ALPL	NM_000478	human	genbank	54_36p	1	reviewed	missense	c.397	p.A133T	0.47	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE"	-	no_errors
RAP1GAP	5909	broad.mit.edu	36	1	21809219	21809219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	21809219	21809219	G	A	SNP	RAP1GAP	NM_002885	human	genbank	54_36p	-1	validated	missense	c.980	p.P327L	0.75	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	"HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	-	no_errors
RAP1GAP	5909	broad.mit.edu	36	1	21816446	21816446	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	21816446	21816446	G	T	SNP	RAP1GAP	NM_002885	human	genbank	54_36p	-1	validated	silent	c.231	p.T77	0.88	NULL	"HMMPfam_Rap_GAP,HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145)"	-	no_errors
USP48	84196	broad.mit.edu	36	1	21920755	21920755	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	21920755	21920755	T	A	SNP	USP48	NM_032236	human	genbank	54_36p	-1	reviewed	missense	c.1738	p.N580Y	1	NULL	"HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like"	-	no_errors
HSPG2	3339	broad.mit.edu	36	1	22031587	22031587	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	22031587	22031587	C	T	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.11195	p.R3732K	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPG2	3339	broad.mit.edu	36	1	22041354	22041354	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	22041354	22041354	G	A	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.9017	p.T3006I	0.27	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPG2	3339	broad.mit.edu	36	1	22050720	22050720	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	22050720	22050720	C	G	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.7064	p.G2355A	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_ig,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPG2	3339	broad.mit.edu	36	1	22077668	22077668	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	22077668	22077668	G	T	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	silent	c.2547	p.R849	1	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPG2	3339	broad.mit.edu	36	1	22095357	22095357	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	22095357	22095357	A	G	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.97	p.S33P	0.7	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB2	2048	broad.mit.edu	36	1	22983771	22983771	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	22983771	22983771	A	C	SNP	EPHB2	NM_004442	human	genbank	54_36p	1	reviewed	silent	c.426	p.A142	0.48	"superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB2	2048	broad.mit.edu	36	1	23081500	23081500	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	23081500	23081500	G	A	SNP	EPHB2	NM_004442	human	genbank	54_36p	1	reviewed	silent	c.1365	p.S455	1	"HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	###############################################################################################################################################################################################################################################################	-	no_errors
E2F2	1870	broad.mit.edu	36	1	23720971	23720971	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	23720971	23720971	C	T	SNP	E2F2	NM_004091	human	genbank	54_36p	-1	reviewed	missense	c.523	p.V175M	1	"superfamily_SSF46785,HMMPfam_E2F_TDP"	"superfamily_SSF46785,HMMPfam_E2F_TDP"	-	no_errors
E2F2	1870	broad.mit.edu	36	1	23729810	23729810	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	23729810	23729810	C	A	SNP	E2F2	NM_004091	human	genbank	54_36p	-1	reviewed	silent	c.63	p.A21	0.03	NULL	"HMMPfam_E2F_TDP,superfamily_SSF46785"	-	no_errors
TCEB3	6924	broad.mit.edu	36	1	23950097	23950097	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	23950097	23950097	C	A	SNP	TCEB3	NM_003198	human	genbank	54_36p	1	reviewed	missense	c.415	p.L139I	0.28	NULL	"superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMPfam_TFIIS,HMMSmart_SM00509,HMMPfam_Elongin_A"	-	no_errors
LYPLA2	11313	broad.mit.edu	36	1	23993658	23993658	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	23993658	23993658	T	C	SNP	LYPLA2	NM_007260	human	genbank	54_36p	1	reviewed	missense	c.626	p.M209T	1	"superfamily_SSF53474,HMMPfam_Abhydrolase_2"	"superfamily_SSF53474,HMMPfam_Abhydrolase_2"	-	no_errors
HMGCL	3155	broad.mit.edu	36	1	24003512	24003512	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	24003512	24003512	G	A	SNP	HMGCL	NM_000191	human	genbank	54_36p	-1	validated	silent	c.841	p.L281	1	"superfamily_Aldolase,HMMPfam_HMGL-like"	"superfamily_Aldolase,HMMPfam_HMGL-like,PatternScan_HMG_COA_LYASE"	-	no_errors
MYOM3	127294	broad.mit.edu	36	1	24307664	24307665	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	24307664	24307665	-	G	INS	MYOM3	NM_152372	human	genbank	54_36p	-1	validated	frame_shift_ins	c.50_49	p.Q17fs	0.938:0.957	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_EF_HAND_1,HMMPfam_ig"	-	no_errors
GRHL3	57822	broad.mit.edu	36	1	24536807	24536807	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	24536807	24536807	G	A	SNP	GRHL3	NM_021180	human	genbank	54_36p	1	reviewed	missense	c.796	p.V266I	0.34	HMMPfam_CP2	HMMPfam_CP2	-	no_errors
C1orf201	90529	broad.mit.edu	36	1	24572784	24572784	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	24572784	24572784	G	A	SNP	C1orf201	NM_178122	human	genbank	54_36p	-1	predicted	missense	c.425	p.P142L	1	NULL	NULL	-	no_errors
SRRM1	10250	broad.mit.edu	36	1	24861854	24861854	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	24861854	24861854	C	T	SNP	SRRM1	NM_005839	human	genbank	54_36p	1	validated	nonsense	c.1600	p.R534*	1	NULL	"superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI"	-	no_errors
TMEM57	55219	broad.mit.edu	36	1	25690650	25690650	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	25690650	25690650	G	A	SNP	TMEM57	NM_018202	human	genbank	54_36p	1	validated	missense	c.1780	p.E594K	1	HMMPfam_Macoilin	"HMMPfam_Macoilin,superfamily_Prefoldin"	-	no_errors
SEPN1	57190	broad.mit.edu	36	1	26000121	26000121	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	26000121	26000121	G	T	SNP	SEPN1	ENST00000354177	human	ensembl	54_36p	1	known	nonsense	c.184	p.E62*	1	NULL	NULL	-	no_errors
PAFAH2	5051	broad.mit.edu	36	1	26175832	26175832	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	26175832	26175832	C	T	SNP	PAFAH2	NM_000437	human	genbank	54_36p	-1	reviewed	missense	c.686	p.R229H	0.81	"HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases"	"HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases"	-	no_errors
EXTL1	2134	broad.mit.edu	36	1	26221812	26221812	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	26221812	26221812	C	T	SNP	EXTL1	NM_004455	human	genbank	54_36p	1	reviewed	missense	c.88	p.L30F	0.99	NULL	"HMMPfam_Exostosin,superfamily_SSF53448,HMMPfam_Glyco_transf_64"	-	no_errors
TRIM63	84676	broad.mit.edu	36	1	26260276	26260276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	26260276	26260276	C	A	SNP	TRIM63	NM_032588	human	genbank	54_36p	-1	reviewed	missense	c.469	p.A157S	1	"HMMPfam_zf-B_box,HMMSmart_BBOX"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX"	-	no_errors
PDIK1L	149420	broad.mit.edu	36	1	26321116	26321116	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	26321116	26321116	C	G	SNP	PDIK1L	NM_152835	human	genbank	54_36p	1	validated	missense	c.487	p.R163G	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CNKSR1	10256	broad.mit.edu	36	1	26387314	26387314	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	26387314	26387314	G	A	SNP	CNKSR1	NM_006314	human	genbank	54_36p	1	reviewed	nonsense	c.1457	p.W486*	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,HMMPfam_CRIC_ras_sig,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
CNKSR1	10256	broad.mit.edu	36	1	26388500	26388504	+	Frame_Shift_Del	DEL	CAGCT	-	CAGCT	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CAGCT	CAGCT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	26388500	26388504	CAGCT	-	DEL	CNKSR1	NM_006314	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2016_2020	p.S673fs	0.006:0.000:0.000:0.001:0.000	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,HMMPfam_CRIC_ras_sig,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"(deletion:cds_exon[26388357,26388626])"	no_errors
CATSPER4	378807	broad.mit.edu	36	1	26400507	26400507	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	26400507	26400507	G	A	SNP	CATSPER4	NM_198137	human	genbank	54_36p	1	validated	silent	c.1275	p.T425	0	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
UBXN11	91544	broad.mit.edu	36	1	26481399	26481476	+	Splice_Site	DEL	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	-	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	26481399	26481476	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	-	DEL	UBXN11	ENST00000389235	human	ensembl	54_36p	-1	known	splice_site_del	c.1397_1363	p.P455fs	0.003:0.002:0.002:0.005:0.006:0.005:0.011:0.017:0.022:0.027:0.032:0.036:0.039:0.043:0.046:0.048:0.050:0.052:0.054:0.055:0.055:0.056:0.056:0.056:0.056:0.055:0.054:0.053:0.051:0.049:0.047:0.041:0.032:0.029:0.030	NULL	"superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain,HMMPfam_SEP,superfamily_Ubiquitin-like,HMMPfam_UBX"	"(deletion:cds_exon[26481377,26481433], intron[26481434,26481478])"	no_errors
UBXN11	91544	broad.mit.edu	36	1	26483246	26483246	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	26483246	26483246	G	A	SNP	UBXN11	NM_183008	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.R351W	1	NULL	"superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain,HMMPfam_SEP,superfamily_Ubiquitin-like,HMMPfam_UBX"	-	no_errors
RPS6KA1	6195	broad.mit.edu	36	1	26758014	26758014	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	26758014	26758014	A	G	SNP	RPS6KA1	NM_001006665	human	genbank	54_36p	1	reviewed	missense	c.1241	p.Q414R	1	superfamily_Kinase_like	"superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
RPS6KA1	6195	broad.mit.edu	36	1	26770634	26770634	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	26770634	26770634	T	G	SNP	RPS6KA1	NM_001006665	human	genbank	54_36p	1	reviewed	silent	c.1725	p.A575	0.73	"HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase"	"HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
NUDC	10726	broad.mit.edu	36	1	27140889	27140889	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	27140889	27140889	G	A	SNP	NUDC	NM_006600	human	genbank	54_36p	1	provisional	missense	c.422	p.G141E	0.99	NULL	"superfamily_HSP20_chap,HMMPfam_CS"	-	no_errors
WASF2	10163	broad.mit.edu	36	1	27611675	27611675	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	27611675	27611675	G	C	SNP	WASF2	NM_006990	human	genbank	54_36p	-1	reviewed	missense	c.802	p.P268A	1	NULL	"HMMPfam_WH2,HMMSmart_WH2"	-	no_errors
SMPDL3B	27293	broad.mit.edu	36	1	28153489	28153489	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	28153489	28153489	G	T	SNP	SMPDL3B	NM_014474	human	genbank	54_36p	1	validated	silent	c.555	p.G185	0	"superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos"	"superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos"	-	no_errors
EYA3	2140	broad.mit.edu	36	1	28187735	28187735	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	28187735	28187735	G	C	SNP	EYA3	NM_001990	human	genbank	54_36p	-1	reviewed	missense	c.1438	p.L480V	1	HMMPfam_Hydrolase	HMMPfam_Hydrolase	-	no_errors
RCC1	1104	broad.mit.edu	36	1	28735875	28735875	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	28735875	28735875	T	G	SNP	RCC1	NM_001048194	human	genbank	54_36p	1	validated	missense	c.1060	p.Y354D	1	"superfamily_RCC1/BLIP-II,HMMPfam_RCC1"	"superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_1,PatternScan_RCC1_2"	-	no_errors
OPRD1	4985	broad.mit.edu	36	1	29062295	29062295	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	29062295	29062295	C	G	SNP	OPRD1	NM_000911	human	genbank	54_36p	1	validated	missense	c.1032	p.S344R	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
EPB41	2035	broad.mit.edu	36	1	29264184	29264184	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	29264184	29264184	G	C	SNP	EPB41	NM_203343	human	genbank	54_36p	1	validated	missense	c.1844	p.W615S	1	HMMPfam_SAB	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD"	-	no_errors
EPB41	2035	broad.mit.edu	36	1	29308495	29308495	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	29308495	29308495	T	C	SNP	EPB41	NM_203343	human	genbank	54_36p	1	validated	missense	c.2107	p.S703P	1	HMMPfam_4_1_CTD	"HMMPfam_SAB,HMMPfam_4_1_CTD,HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236"	-	no_errors
TMEM200B	399474	broad.mit.edu	36	1	29320207	29320207	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	29320207	29320207	T	A	SNP	TMEM200B	NM_001003682	human	genbank	54_36p	-1	validated	missense	c.721	p.T241S	0.04	NULL	HMMPfam_DUF2371	-	no_errors
SRSF4	6429	broad.mit.edu	36	1	29347560	29347560	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	29347560	29347560	A	C	SNP	SFRS4	NM_005626	human	genbank	54_36p	-1	reviewed	silent	c.1434	p.S478	0.93	NULL	"HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1"	-	no_errors
PTPRU	10076	broad.mit.edu	36	1	29504461	29504461	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	29504461	29504461	C	A	SNP	PTPRU	NM_005704	human	genbank	54_36p	1	reviewed	missense	c.2784	p.H928Q	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
NKAIN1	79570	broad.mit.edu	36	1	31427293	31427293	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	31427293	31427293	C	G	SNP	NKAIN1	NM_024522	human	genbank	54_36p	-1	provisional	splice_site	c.482+1	e5+1	1	-	-	-	no_errors
FABP3	2170	broad.mit.edu	36	1	31618432	31618432	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	31618432	31618432	A	C	SNP	FABP3	NM_004102	human	genbank	54_36p	-1	reviewed	missense	c.17	p.L6R	0	"HMMPfam_Lipocalin,superfamily_Lipocalins"	"PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Lipocalins"	-	no_errors
SERINC2	347735	broad.mit.edu	36	1	31674871	31674871	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	31674871	31674871	C	T	SNP	SERINC2	NM_178865	human	genbank	54_36p	1	validated	silent	c.912	p.N304	0	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors
COL16A1	1307	broad.mit.edu	36	1	31890972	31890972	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	31890972	31890972	C	A	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	missense	c.4682	p.G1561V	1	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
COL16A1	1307	broad.mit.edu	36	1	31898820	31898820	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	31898820	31898820	G	A	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	missense	c.3832	p.P1278S	1	HMMPfam_Collagen	"HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
COL16A1	1307	broad.mit.edu	36	1	31929813	31929813	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	31929813	31929813	G	T	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	silent	c.1275	p.I425	1	HMMPfam_Collagen	"HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
COL16A1	1307	broad.mit.edu	36	1	31936148	31936148	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	31936148	31936148	C	A	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	missense	c.603	p.R201S	0	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases"	"HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
COL16A1	1307	broad.mit.edu	36	1	31938013	31938013	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	31938013	31938013	G	T	SNP	COL16A1	NM_001856	human	genbank	54_36p	-1	reviewed	missense	c.254	p.T85N	0.77	HMMSmart_SM00210	"HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
BAI2	576	broad.mit.edu	36	1	31969150	31969150	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	31969150	31969150	C	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	silent	c.4218	p.L1406	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
BAI2	576	broad.mit.edu	36	1	31974808	31974808	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	31974808	31974808	C	G	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.3083	p.R1028P	0.98	HMMPfam_7tm_2	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008"	-	no_errors
BAI2	576	broad.mit.edu	36	1	31978222	31978222	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	31978222	31978222	C	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.2059	p.V687M	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008"	-	no_errors
BAI2	576	broad.mit.edu	36	1	31979906	31979906	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	31979906	31979906	A	C	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.1593	p.H531Q	0.96	"HMMPfam_HRM,HMMSmart_SM00008"	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008"	-	no_errors
BAI2	576	broad.mit.edu	36	1	31994493	31994493	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	31994493	31994493	G	T	SNP	BAI2	NM_001703	human	genbank	54_36p	-1	reviewed	missense	c.532	p.L178I	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008"	-	no_errors
SPOCD1	90853	broad.mit.edu	36	1	32052195	32052195	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32052195	32052195	C	G	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	missense	c.1327	p.D443H	0.06	NULL	"superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510,HMMPfam_TFIIS_M,HMMPfam_SPOC"	-	no_errors
SPOCD1	90853	broad.mit.edu	36	1	32053345	32053345	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	32053345	32053345	G	T	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	silent	c.177	p.I59	0	NULL	"HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMPfam_SPOC,HMMSmart_SM00510"	-	no_errors
KHDRBS1	10657	broad.mit.edu	36	1	32276782	32276782	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32276782	32276782	G	A	SNP	KHDRBS1	NM_006559	human	genbank	54_36p	1	provisional	missense	c.1150	p.E384K	1	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1"	-	no_errors
TMEM39B	55116	broad.mit.edu	36	1	32333107	32333107	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	32333107	32333107	G	C	SNP	TMEM39B	NM_018056	human	genbank	54_36p	1	validated	missense	c.682	p.G228R	1	HMMPfam_Tmp39	HMMPfam_Tmp39	-	no_errors
CCDC28B	79140	broad.mit.edu	36	1	32440214	32440214	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	32440214	32440214	A	C	SNP	CCDC28B	NM_024296	human	genbank	54_36p	1	reviewed	missense	c.91	p.T31P	1	NULL	NULL	-	no_errors
IQCC	55721	broad.mit.edu	36	1	32444397	32444397	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32444397	32444397	A	T	SNP	IQCC	NM_018134	human	genbank	54_36p	1	provisional	missense	c.98	p.Y33F	1	NULL	HMMPfam_IQ	-	no_errors
IQCC	55721	broad.mit.edu	36	1	32445218	32445218	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32445218	32445218	C	T	SNP	IQCC	NM_018134	human	genbank	54_36p	1	provisional	silent	c.468	p.S156	0.08	NULL	HMMPfam_IQ	-	no_errors
IQCC	55721	broad.mit.edu	36	1	32445780	32445780	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32445780	32445780	A	T	SNP	IQCC	NM_018134	human	genbank	54_36p	1	provisional	missense	c.911	p.D304V	0	NULL	HMMPfam_IQ	-	no_errors
EIF3I	8668	broad.mit.edu	36	1	32460735	32460735	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32460735	32460735	C	G	SNP	EIF3I	NM_003757	human	genbank	54_36p	1	validated	missense	c.13	p.L5V	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
FAM167B	84734	broad.mit.edu	36	1	32485670	32485670	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32485670	32485670	G	T	SNP	FAM167B	NM_032648	human	genbank	54_36p	1	validated	missense	c.61	p.G21W	1	NULL	NULL	-	no_errors
FAM167B	84734	broad.mit.edu	36	1	32486679	32486684	+	In_Frame_Del	DEL	GAGCTG	-	GAGCTG	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	GAGCTG	GAGCTG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	32486679	32486684	GAGCTG	-	DEL	FAM167B	NM_032648	human	genbank	54_36p	1	validated	in_frame_del	c.382_387	p.LE131in_frame_del	1.000:1.000:0.999:1.000:1.000:1.000	NULL	NULL	"(deletion:cds_exon[32486559,32486789])"	no_errors
LCK	3932	broad.mit.edu	36	1	32518373	32518373	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32518373	32518373	C	T	SNP	LCK	NM_001042771	human	genbank	54_36p	1	reviewed	silent	c.1302	p.V434	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
HDAC1	3065	broad.mit.edu	36	1	32540833	32540833	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	32540833	32540833	G	C	SNP	HDAC1	NM_004964	human	genbank	54_36p	1	reviewed	missense	c.74	p.G25A	1	superfamily_Arginase/deacetylase	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	-	no_errors
SYNC	81493	broad.mit.edu	36	1	32933141	32933141	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	32933141	32933141	G	A	SNP	SYNC	NM_030786	human	genbank	54_36p	-1	validated	missense	c.152	p.A51V	0.99	NULL	NULL	-	no_errors
KIAA1522	57648	broad.mit.edu	36	1	33008802	33008802	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	33008802	33008802	C	T	SNP	KIAA1522	NM_020888	human	genbank	54_36p	1	validated	missense	c.1435	p.R479W	0.36	NULL	NULL	-	no_errors
KIAA1522	57648	broad.mit.edu	36	1	33008825	33008825	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	33008825	33008825	C	A	SNP	KIAA1522	NM_020888	human	genbank	54_36p	1	validated	silent	c.1458	p.G486	0.07	NULL	NULL	-	no_errors
HPCA	3208	broad.mit.edu	36	1	33127266	33127266	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	33127266	33127266	C	T	SNP	HPCA	NM_002143	human	genbank	54_36p	1	reviewed	silent	c.180	p.D60	1	superfamily_EF-hand	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
HPCA	3208	broad.mit.edu	36	1	33127444	33127444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	33127444	33127444	G	C	SNP	HPCA	NM_002143	human	genbank	54_36p	1	reviewed	missense	c.358	p.E120Q	1	"HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand"	"HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand"	-	no_errors
ADC	113451	broad.mit.edu	36	1	33322260	33322260	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	33322260	33322260	C	G	SNP	ADC	NM_052998	human	genbank	54_36p	1	validated	missense	c.224	p.P75R	0.01	"HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1"	"HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel,PatternScan_ODR_DC_2_1,PatternScan_ODR_DC_2_2,superfamily_Alanine racemase C-terminal domain-like,HMMPfam_Orn_DAP_Arg_deC"	-	no_errors
PHC2	1912	broad.mit.edu	36	1	33567230	33567230	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	33567230	33567230	C	G	SNP	PHC2	NM_198040	human	genbank	54_36p	-1	reviewed	missense	c.2250	p.L750F	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
CSMD2	114784	broad.mit.edu	36	1	33771391	33771391	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	33771391	33771391	C	T	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	silent	c.9585	p.T3195	0.99	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC"	-	no_errors
CSMD2	114784	broad.mit.edu	36	1	33843510	33843510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	33843510	33843510	C	A	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	missense	c.6497	p.G2166V	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD2	114784	broad.mit.edu	36	1	33849271	33849271	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	33849271	33849271	G	A	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	silent	c.6180	p.S2060	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD2	114784	broad.mit.edu	36	1	33901210	33901210	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	33901210	33901210	C	T	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	silent	c.4002	p.E1334	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD2	114784	broad.mit.edu	36	1	33901272	33901272	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	33901272	33901272	A	T	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	missense	c.3940	p.F1314I	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD2	114784	broad.mit.edu	36	1	33937113	33937113	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	33937113	33937113	C	A	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	missense	c.3632	p.C1211F	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD2	114784	broad.mit.edu	36	1	34270780	34270780	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	34270780	34270780	A	C	SNP	CSMD2	NM_052896	human	genbank	54_36p	-1	validated	splice_site	c.397+2	e3+2	1	-	-	-	no_errors
GJB4	127534	broad.mit.edu	36	1	34999784	34999784	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	34999784	34999784	G	A	SNP	GJB4	NM_153212	human	genbank	54_36p	1	validated	silent	c.342	p.P114	0	HMMPfam_Connexin	"HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
DLGAP3	58512	broad.mit.edu	36	1	35107237	35107237	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	35107237	35107237	C	T	SNP	DLGAP3	NM_001080418	human	genbank	54_36p	-1	provisional	missense	c.2041	p.V681M	1	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
DLGAP3	58512	broad.mit.edu	36	1	35143560	35143560	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	35143560	35143560	G	A	SNP	DLGAP3	NM_001080418	human	genbank	54_36p	-1	provisional	silent	c.12	p.Y4	1	NULL	HMMPfam_GKAP	-	no_errors
ZMYM6	9204	broad.mit.edu	36	1	35225435	35225437	+	In_Frame_Del	DEL	AAA	-	AAA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	AAA	AAA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	35225435	35225437	AAA	-	DEL	ZMYM6	NM_007167	human	genbank	54_36p	-1	validated	in_frame_del	c.3835_3833	p.F1278in_frame_del	1.000:1.000:1.000	NULL	"HMMPfam_zf-FCS,HMMSmart_SM00746"	"(deletion:cds_exon[35225292,35227123])"	no_errors
ZMYM6	9204	broad.mit.edu	36	1	35253011	35253011	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	35253011	35253011	T	C	SNP	ZMYM6	NM_007167	human	genbank	54_36p	-1	validated	silent	c.669	p.K223	1	"HMMPfam_zf-FCS,HMMSmart_SM00746"	"HMMPfam_zf-FCS,HMMSmart_SM00746"	-	no_errors
ZMYM4	9202	broad.mit.edu	36	1	35625678	35625678	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	35625678	35625678	G	A	SNP	ZMYM4	NM_005095	human	genbank	54_36p	1	validated	missense	c.2149	p.D717N	1	"HMMPfam_zf-FCS,HMMSmart_SM00746"	"HMMPfam_zf-FCS,HMMSmart_SM00746,PatternScan_GLYCO_HORMONE_BETA_1"	-	no_errors
CLSPN	63967	broad.mit.edu	36	1	35974712	35974712	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	35974712	35974712	C	T	SNP	CLSPN	NM_022111	human	genbank	54_36p	-1	reviewed	missense	c.3992	p.R1331Q	0.78	NULL	NULL	-	no_errors
EIF2C4	192670	broad.mit.edu	36	1	36064236	36064236	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	36064236	36064236	A	G	SNP	EIF2C4	NM_017629	human	genbank	54_36p	1	reviewed	missense	c.748	p.K250E	1	"superfamily_PAZ domain,HMMPfam_PAZ"	"superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi"	-	no_errors
EIF2C1	26523	broad.mit.edu	36	1	36140247	36140247	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	36140247	36140247	T	C	SNP	EIF2C1	NM_012199	human	genbank	54_36p	1	reviewed	missense	c.1252	p.Y418H	1	NULL	"superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi"	-	no_errors
MAP7D1	55700	broad.mit.edu	36	1	36414442	36414442	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	36414442	36414442	G	A	SNP	MAP7D1	NM_018067	human	genbank	54_36p	1	provisional	silent	c.906	p.T302	1	NULL	HMMPfam_MAP7	-	no_errors
MAP7D1	55700	broad.mit.edu	36	1	36418125	36418125	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	36418125	36418125	G	C	SNP	MAP7D1	NM_018067	human	genbank	54_36p	1	provisional	missense	c.2385	p.Q795H	1	NULL	HMMPfam_MAP7	-	no_errors
MAP7D1	55700	broad.mit.edu	36	1	36418127	36418127	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	36418127	36418127	A	G	SNP	MAP7D1	NM_018067	human	genbank	54_36p	1	provisional	missense	c.2387	p.E796G	1	NULL	HMMPfam_MAP7	-	no_errors
THRAP3	9967	broad.mit.edu	36	1	36525163	36525163	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	36525163	36525163	C	G	SNP	THRAP3	NM_005119	human	genbank	54_36p	1	validated	missense	c.745	p.P249A	1	NULL	NULL	-	no_errors
THRAP3	9967	broad.mit.edu	36	1	36527639	36527639	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	36527639	36527639	C	A	SNP	THRAP3	NM_005119	human	genbank	54_36p	1	validated	missense	c.1432	p.P478T	0	NULL	NULL	-	no_errors
THRAP3	9967	broad.mit.edu	36	1	36530793	36530793	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	36530793	36530793	C	A	SNP	THRAP3	NM_005119	human	genbank	54_36p	1	validated	missense	c.1926	p.H642Q	1	NULL	NULL	-	no_errors
STK40	83931	broad.mit.edu	36	1	36586901	36586901	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	36586901	36586901	G	A	SNP	STK40	NM_032017	human	genbank	54_36p	-1	provisional	silent	c.726	p.P242	0.2	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
OSCP1	127700	broad.mit.edu	36	1	36660987	36660987	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	36660987	36660987	C	T	SNP	C1orf102	NM_145047	human	genbank	54_36p	-1	validated	missense	c.748	p.G250R	1	NULL	HMMPfam_Oscp1	-	no_errors
MRPS15	64960	broad.mit.edu	36	1	36694499	36694499	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	36694499	36694499	C	T	SNP	MRPS15	NM_031280	human	genbank	54_36p	-1	reviewed	missense	c.512	p.R171H	0.99	"superfamily_S15/NS1 RNA-binding domain,HMMPfam_Ribosomal_S15"	"superfamily_S15/NS1 RNA-binding domain,HMMPfam_Ribosomal_S15"	-	no_errors
CSF3R	1441	broad.mit.edu	36	1	36709817	36709817	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	36709817	36709817	T	A	SNP	CSF3R	NM_156039	human	genbank	54_36p	-1	reviewed	missense	c.1089	p.E363D	0	"superfamily_FN_III-like,HMMSmart_FN3"	"HMMPfam_Lep_receptor_Ig,superfamily_FN_III-like,HMMSmart_FN3,PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3"	-	no_errors
GRIK3	2899	broad.mit.edu	36	1	37118979	37118979	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	37118979	37118979	G	A	SNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	silent	c.393	p.P131	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,superfamily_SSF55620"	-	no_errors
GRIK3	2899	broad.mit.edu	36	1	37119018	37119018	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	37119018	37119018	G	A	SNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	silent	c.354	p.T118	1	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620"	-	no_errors
GRIK3	2899	broad.mit.edu	36	1	37129116	37129116	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	37129116	37129116	G	C	SNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	missense	c.284	p.T95S	1	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620"	-	no_errors
GRIK3	2899	broad.mit.edu	36	1	37129210	37129211	+	Missense_Mutation	DNP	CA	CA	AG	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	37129210	37129211	CA	AG	DNP	GRIK3	NM_000831	human	genbank	54_36p	-1	reviewed	missense	c.190_189	p.A64S	1.000:1.000	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850,superfamily_SSF55620"	-	no_errors
ZC3H12A	80149	broad.mit.edu	36	1	37718539	37718539	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	37718539	37718539	G	A	SNP	ZC3H12A	NM_025079	human	genbank	54_36p	1	validated	missense	c.505	p.E169K	1	NULL	NULL	-	no_errors
ZC3H12A	80149	broad.mit.edu	36	1	37721663	37721663	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	37721663	37721663	G	A	SNP	ZC3H12A	NM_025079	human	genbank	54_36p	1	validated	missense	c.1664	p.S555N	0.35	NULL	NULL	-	no_errors
SNIP1	79753	broad.mit.edu	36	1	37792280	37792280	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	37792280	37792280	C	T	SNP	SNIP1	NM_024700	human	genbank	54_36p	-1	provisional	silent	c.138	p.P46	0.01	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA"	-	no_errors
GNL2	29889	broad.mit.edu	36	1	37812874	37812874	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	37812874	37812874	G	A	SNP	GNL2	NM_013285	human	genbank	54_36p	-1	validated	silent	c.1281	p.F427	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_NGP1NT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1"	-	no_errors
EPHA10	284656	broad.mit.edu	36	1	37958608	37958609	+	Splice_Site	DNP	AC	AC	CT	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	37958608	37958609	AC	CT	DNP	EPHA10	NM_001099439	human	genbank	54_36p	-1	validated	splice_site	c.2412+1_2412+1	e13+1	1.000:1.000	-	-	-	no_errors
MTF1	4520	broad.mit.edu	36	1	38078292	38078292	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	38078292	38078292	G	A	SNP	MTF1	NM_005955	human	genbank	54_36p	-1	reviewed	silent	c.534	p.G178	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RRAGC	64121	broad.mit.edu	36	1	39094114	39094114	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	39094114	39094114	T	C	SNP	RRAGC	NM_022157	human	genbank	54_36p	-1	provisional	missense	c.494	p.Y165C	1	"superfamily_SSF52540,HMMPfam_Gtr1_RagA"	"superfamily_SSF52540,HMMPfam_Gtr1_RagA"	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39570443	39570443	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	39570443	39570443	C	G	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.916	p.L306V	0.92	"superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin"	"superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2"	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39571992	39571992	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	39571992	39571992	G	A	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.2465	p.C822Y	0.89	"HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399"	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39579069	39579069	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	39579069	39579069	G	C	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.5758	p.V1920L	0.48	NULL	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39599810	39599810	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	39599810	39599810	A	G	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	silent	c.7965	p.L2655	1	NULL	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39626441	39626441	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	39626441	39626441	A	T	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.10660	p.M3554L	0.76	superfamily_Spectrin	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39626601	39626601	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	39626601	39626601	A	G	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.10820	p.N3607S	0.26	"HMMSmart_SPEC,superfamily_Spectrin"	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
KIAA0754	643314	broad.mit.edu	36	1	39649926	39649926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	39649926	39649926	C	T	SNP	KIAA0754	NM_015038	human	genbank	54_36p	1	predicted	missense	c.1402	p.L468F	1	NULL	NULL	-	no_errors
KIAA0754	643314	broad.mit.edu	36	1	39651979	39651979	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	39651979	39651979	C	T	SNP	KIAA0754	NM_015038	human	genbank	54_36p	1	predicted	missense	c.3455	p.T1152I	0	NULL	NULL	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39672880	39672880	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	39672880	39672880	G	C	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	missense	c.13093	p.E4365Q	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
MACF1	23499	broad.mit.edu	36	1	39689404	39689404	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	39689404	39689404	G	A	SNP	MACF1	NM_033044	human	genbank	54_36p	1	reviewed	silent	c.15681	p.Q5227	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399"	-	no_errors
HEYL	26508	broad.mit.edu	36	1	39877855	39877855	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	39877855	39877855	G	A	SNP	HEYL	NM_014571	human	genbank	54_36p	-1	reviewed	silent	c.30	p.S10	1	NULL	"HMMPfam_HLH,superfamily_HLH_basic,HMMSmart_HLH,HMMSmart_ORANGE,HMMPfam_Hairy_orange"	-	no_errors
NT5C1A	84618	broad.mit.edu	36	1	39899355	39899355	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	39899355	39899355	T	C	SNP	NT5C1A	NM_032526	human	genbank	54_36p	-1	provisional	missense	c.724	p.N242D	1	HMMPfam_5-nucleotidase	HMMPfam_5-nucleotidase	-	no_errors
NT5C1A	84618	broad.mit.edu	36	1	39899461	39899461	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	39899461	39899461	C	T	SNP	NT5C1A	NM_032526	human	genbank	54_36p	-1	provisional	silent	c.618	p.L206	1	HMMPfam_5-nucleotidase	HMMPfam_5-nucleotidase	-	no_errors
TRIT1	54802	broad.mit.edu	36	1	40088471	40088471	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	40088471	40088471	G	-	DEL	TRIT1	NM_017646	human	genbank	54_36p	-1	validated	frame_shift_del	c.610	p.H204fs	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IPPT"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IPPT,HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[40088378,40088520])"	no_errors
TRIT1	54802	broad.mit.edu	36	1	40091117	40091117	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	40091117	40091117	C	T	SNP	TRIT1	NM_017646	human	genbank	54_36p	-1	validated	missense	c.433	p.E145K	0.01	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IPPT"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IPPT,HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MFSD2A	84879	broad.mit.edu	36	1	40207006	40207006	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	40207006	40207006	T	G	SNP	MFSD2	NM_032793	human	genbank	54_36p	1	validated	splice_site	c.1529+2	e13+2	1	-	-	-	no_errors
RLF	6018	broad.mit.edu	36	1	40399896	40399896	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	40399896	40399896	G	T	SNP	RLF	NM_012421	human	genbank	54_36p	1	validated	splice_site	c.237+1	e1+1	1	-	-	-	no_errors
RLF	6018	broad.mit.edu	36	1	40476178	40476178	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	40476178	40476178	A	G	SNP	RLF	NM_012421	human	genbank	54_36p	1	validated	missense	c.3217	p.K1073E	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_SSF57667"	-	no_errors
TMCO2	127391	broad.mit.edu	36	1	40489833	40489833	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	40489833	40489833	G	C	SNP	TMCO2	NM_001008740	human	genbank	54_36p	1	validated	missense	c.529	p.G177R	1	NULL	NULL	-	no_errors
COL9A2	1298	broad.mit.edu	36	1	40544415	40544432	+	In_Frame_Del	DEL	CCTCCTTTTGTCCCAGGC	-	CCTCCTTTTGTCCCAGGC	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	CCTCCTTTTGTCCCAGGC	CCTCCTTTTGTCCCAGGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	40544415	40544432	CCTCCTTTTGTCCCAGGC	-	DEL	COL9A2	NM_001852	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1040_1023	p.QPGTKGG341in_frame_delH	0.998:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:0.998:1.000:1.000:0.975	NULL	HMMPfam_Collagen	"(deletion:cds_exon[40544402,40544446])"	no_errors
COL9A2	1298	broad.mit.edu	36	1	40549971	40549971	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	40549971	40549971	C	T	SNP	COL9A2	NM_001852	human	genbank	54_36p	-1	reviewed	missense	c.421	p.D141N	0.28	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
SMAP2	64744	broad.mit.edu	36	1	40651355	40651355	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	40651355	40651355	G	A	SNP	SMAP2	NM_022733	human	genbank	54_36p	1	provisional	silent	c.483	p.V161	1	NULL	"superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105"	-	no_errors
ZNF643	65243	broad.mit.edu	36	1	40695662	40695662	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	40695662	40695662	C	G	SNP	ZNF643	NM_023070	human	genbank	54_36p	1	provisional	missense	c.94	p.L32V	0.05	HMMSmart_KRAB	"superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF643	65243	broad.mit.edu	36	1	40701834	40701834	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	40701834	40701834	A	G	SNP	ZNF643	NM_023070	human	genbank	54_36p	1	provisional	missense	c.1285	p.S429G	0	NULL	"HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
HIVEP3	59269	broad.mit.edu	36	1	41818545	41818545	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	41818545	41818545	G	A	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.4511	p.S1504L	0.12	NULL	"PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
HIVEP3	59269	broad.mit.edu	36	1	41821633	41821633	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	41821633	41821633	C	T	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.1423	p.V475M	1	NULL	"PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
HIVEP3	59269	broad.mit.edu	36	1	41822050	41822050	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	41822050	41822050	C	A	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	nonsense	c.1006	p.E336*	0.99	NULL	"PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
FOXJ3	22887	broad.mit.edu	36	1	42444044	42444044	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	42444044	42444044	C	T	SNP	FOXJ3	NM_014947	human	genbank	54_36p	-1	validated	silent	c.606	p.L202	1	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
FOXJ3	22887	broad.mit.edu	36	1	42466212	42466212	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	42466212	42466212	C	A	SNP	FOXJ3	NM_014947	human	genbank	54_36p	-1	validated	missense	c.457	p.A153S	1	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain"	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_Winged helix DNA-binding domain"	-	no_errors
ZMYND12	84217	broad.mit.edu	36	1	42688283	42688283	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	42688283	42688283	T	G	SNP	ZMYND12	NM_032257	human	genbank	54_36p	-1	provisional	missense	c.145	p.I49L	1	"PatternScan_ZF_MYND_1,HMMPfam_zf-MYND"	"PatternScan_ZF_MYND_1,HMMPfam_zf-MYND,superfamily_TPR-like"	-	no_errors
CCDC30	728621	broad.mit.edu	36	1	42883054	42883054	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	42883054	42883054	C	T	SNP	LOC728621	NM_001080850	human	genbank	54_36p	1	validated	missense	c.1879	p.R627C	0.01	NULL	NULL	-	no_errors
YBX1	4904	broad.mit.edu	36	1	42921706	42921706	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	42921706	42921706	G	T	SNP	YBX1	NM_004559	human	genbank	54_36p	1	validated	missense	c.212	p.G71V	1	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357"	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK"	-	no_errors
LEPRE1	64175	broad.mit.edu	36	1	42986028	42986028	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	42986028	42986028	C	T	SNP	LEPRE1	NM_022356	human	genbank	54_36p	-1	reviewed	missense	c.1867	p.D623N	1	"HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy"	"superfamily_SSF48452,HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy"	-	no_errors
LEPRE1	64175	broad.mit.edu	36	1	42993203	42993203	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	42993203	42993203	G	T	SNP	LEPRE1	NM_022356	human	genbank	54_36p	-1	reviewed	missense	c.1269	p.N423K	1	NULL	"HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc,superfamily_SSF48452"	-	no_errors
LEPRE1	64175	broad.mit.edu	36	1	43004891	43004891	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	43004891	43004891	A	T	SNP	LEPRE1	NM_022356	human	genbank	54_36p	-1	reviewed	silent	c.339	p.L113	1	superfamily_SSF48452	"HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc,superfamily_SSF48452"	-	no_errors
C1orf50	79078	broad.mit.edu	36	1	43013004	43013004	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	43013004	43013004	G	T	SNP	C1orf50	NM_024097	human	genbank	54_36p	1	predicted	missense	c.292	p.D98Y	1	HMMPfam_DUF2452	HMMPfam_DUF2452	-	no_errors
ERMAP	114625	broad.mit.edu	36	1	43080955	43080955	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	43080955	43080955	A	T	SNP	ERMAP	NM_001017922	human	genbank	54_36p	1	reviewed	missense	c.893	p.Y298F	0.07	"HMMPfam_SPRY,HMMSmart_SPRY"	"HMMSmart_IG,superfamily_SSF48726,HMMPfam_V-set,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
FAM183A	440585	broad.mit.edu	36	1	43394541	43394541	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	43394541	43394541	G	A	SNP	FAM183A	NM_001101376	human	genbank	54_36p	1	validated	silent	c.375	p.T125	0.99	NULL	NULL	-	no_errors
TIE1	7075	broad.mit.edu	36	1	43545181	43545181	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	43545181	43545181	A	T	SNP	TIE1	NM_005424	human	genbank	54_36p	1	provisional	missense	c.568	p.S190C	0.12	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	###############################################################################################################################################################################################################################################################	-	no_errors
TIE1	7075	broad.mit.edu	36	1	43559540	43559540	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	43559540	43559540	G	T	SNP	TIE1	NM_005424	human	genbank	54_36p	1	provisional	missense	c.3121	p.V1041F	1	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like"	###############################################################################################################################################################################################################################################################	-	no_errors
KIAA0467	23334	broad.mit.edu	36	1	43671326	43671326	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	43671326	43671326	G	A	SNP	KIAA0467	NM_015284	human	genbank	54_36p	1	predicted	silent	c.2985	p.R995	0.96	NULL	NULL	-	no_errors
KIAA0467	23334	broad.mit.edu	36	1	43686214	43686214	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	43686214	43686214	A	T	SNP	KIAA0467	NM_015284	human	genbank	54_36p	1	predicted	missense	c.6851	p.E2284V	1	NULL	NULL	-	no_errors
PTPRF	5792	broad.mit.edu	36	1	43817146	43817146	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	43817146	43817146	G	A	SNP	PTPRF	NM_002840	human	genbank	54_36p	1	reviewed	missense	c.647	p.R216H	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRF	5792	broad.mit.edu	36	1	43847746	43847746	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	43847746	43847746	C	G	SNP	PTPRF	NM_002840	human	genbank	54_36p	1	reviewed	nonsense	c.3963	p.Y1321*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRF	5792	broad.mit.edu	36	1	43858402	43858402	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	43858402	43858402	G	C	SNP	PTPRF	NM_002840	human	genbank	54_36p	1	reviewed	missense	c.5161	p.E1721Q	1	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II"	###############################################################################################################################################################################################################################################################	-	no_errors
ST3GAL3	6487	broad.mit.edu	36	1	44132700	44132700	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44132700	44132700	C	T	SNP	ST3GAL3	NM_174963	human	genbank	54_36p	1	reviewed	missense	c.568	p.R190W	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
ST3GAL3	6487	broad.mit.edu	36	1	44168413	44168413	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44168413	44168413	G	A	SNP	ST3GAL3	NM_174963	human	genbank	54_36p	1	reviewed	missense	c.1268	p.R423Q	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
IPO13	9670	broad.mit.edu	36	1	44196337	44196337	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	44196337	44196337	G	A	SNP	IPO13	NM_014652	human	genbank	54_36p	1	reviewed	missense	c.1642	p.V548M	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1"	-	no_errors
DPH2	1802	broad.mit.edu	36	1	44210323	44210323	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44210323	44210323	T	C	SNP	DPH2	NM_001384	human	genbank	54_36p	1	reviewed	silent	c.1162	p.L388	0.82	NULL	HMMPfam_Diphthamide_syn	-	no_errors
SLC6A9	6536	broad.mit.edu	36	1	44236171	44236171	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	44236171	44236171	G	A	SNP	SLC6A9	NM_201649	human	genbank	54_36p	-1	validated	silent	c.1869	p.C623	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
KLF17	128209	broad.mit.edu	36	1	44367741	44367741	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	44367741	44367741	C	A	SNP	KLF17	NM_173484	human	genbank	54_36p	1	validated	missense	c.211	p.P71T	0	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
KLF17	128209	broad.mit.edu	36	1	44368256	44368256	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44368256	44368256	G	T	SNP	KLF17	NM_173484	human	genbank	54_36p	1	validated	missense	c.726	p.Q242H	0	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ERI3	79033	broad.mit.edu	36	1	44551427	44551427	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44551427	44551427	C	G	SNP	ERI3	NM_024066	human	genbank	54_36p	-1	validated	splice_site	c.666+1	e5+1	1	-	-	-	no_errors
ERI3	79033	broad.mit.edu	36	1	44577347	44577347	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44577347	44577347	A	G	SNP	ERI3	NM_024066	human	genbank	54_36p	-1	validated	missense	c.446	p.L149P	1	"superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T"	"superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T"	-	no_errors
TMEM53	79639	broad.mit.edu	36	1	44892896	44892896	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44892896	44892896	G	A	SNP	TMEM53	NM_024587	human	genbank	54_36p	-1	provisional	silent	c.756	p.H252	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_DUF829"	"superfamily_alpha/beta-Hydrolases,HMMPfam_DUF829"	-	no_errors
TMEM53	79639	broad.mit.edu	36	1	44893252	44893252	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	44893252	44893252	G	T	SNP	TMEM53	NM_024587	human	genbank	54_36p	-1	provisional	missense	c.400	p.R134S	1	"HMMPfam_DUF829,superfamily_alpha/beta-Hydrolases"	"HMMPfam_DUF829,superfamily_alpha/beta-Hydrolases"	-	no_errors
KIF2C	11004	broad.mit.edu	36	1	44985645	44985645	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	44985645	44985645	T	G	SNP	KIF2C	NM_006845	human	genbank	54_36p	1	validated	missense	c.168	p.I56M	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
RPS8	6202	broad.mit.edu	36	1	45016021	45016021	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45016021	45016021	C	T	SNP	RPS8	NM_001012	human	genbank	54_36p	1	reviewed	silent	c.360	p.P120	1	HMMPfam_Ribosomal_S8e	"HMMPfam_Ribosomal_S8e,PatternScan_RIBOSOMAL_S8E"	-	no_errors
RPS8	6202	broad.mit.edu	36	1	45016024	45016024	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	45016024	45016024	G	T	SNP	RPS8	NM_001012	human	genbank	54_36p	1	reviewed	silent	c.363	p.L121	1	HMMPfam_Ribosomal_S8e	"HMMPfam_Ribosomal_S8e,PatternScan_RIBOSOMAL_S8E"	-	no_errors
BEST4	266675	broad.mit.edu	36	1	45023441	45023441	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45023441	45023441	C	G	SNP	BEST4	NM_153274	human	genbank	54_36p	-1	reviewed	missense	c.838	p.A280P	0	HMMPfam_Bestrophin	HMMPfam_Bestrophin	-	no_errors
EIF2B3	8891	broad.mit.edu	36	1	45113910	45113910	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45113910	45113910	G	C	SNP	EIF2B3	NM_020365	human	genbank	54_36p	-1	validated	silent	c.1020	p.V340	0.73	"superfamily_Nucleotide-diphospho-sugar transferases,superfamily_Trimeric LpxA-like enzymes"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_NTP_transferase,superfamily_Trimeric LpxA-like enzymes"	-	no_errors
HECTD3	79654	broad.mit.edu	36	1	45247932	45247932	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45247932	45247932	T	C	SNP	HECTD3	NM_024602	human	genbank	54_36p	-1	validated	missense	c.770	p.N257S	1	"superfamily_Galactose-binding domain-like,HMMPfam_APC10"	"superfamily_Galactose-binding domain-like,HMMPfam_APC10,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_HECT"	-	no_errors
CCDC163P	126661	broad.mit.edu	36	1	45737794	45737794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45737794	45737794	A	T	SNP	LOC126661	NM_001102601	human	genbank	54_36p	-1	predicted	missense	c.75	p.N25K	1	NULL	NULL	-	no_errors
NASP	4678	broad.mit.edu	36	1	45853636	45853636	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	45853636	45853636	A	G	SNP	NASP	NM_172164	human	genbank	54_36p	1	reviewed	missense	c.1934	p.K645R	1	NULL	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMPfam_SHNi-TPR"	-	no_errors
CCDC17	149483	broad.mit.edu	36	1	45859040	45859040	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45859040	45859040	A	G	SNP	CCDC17	ENST00000343901	human	ensembl	54_36p	-1	known	missense	c.1556	p.V519A	0.11	NULL	NULL	-	no_errors
CCDC17	149483	broad.mit.edu	36	1	45861055	45861055	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	45861055	45861055	G	T	SNP	CCDC17	ENST00000343901	human	ensembl	54_36p	-1	known	missense	c.599	p.S200Y	0	NULL	NULL	-	no_errors
GPBP1L1	60313	broad.mit.edu	36	1	45892901	45892901	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45892901	45892901	G	A	SNP	GPBP1L1	NM_021639	human	genbank	54_36p	-1	validated	silent	c.378	p.S126	1	NULL	NULL	-	no_errors
TMEM69	51249	broad.mit.edu	36	1	45932007	45932007	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45932007	45932007	C	T	SNP	TMEM69	NM_016486	human	genbank	54_36p	1	validated	missense	c.587	p.A196V	1	NULL	NULL	-	no_errors
IPP	3652	broad.mit.edu	36	1	45952625	45952625	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	45952625	45952625	T	C	SNP	IPP	NM_005897	human	genbank	54_36p	-1	reviewed	missense	c.1411	p.M471V	1	"HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
MAST2	23139	broad.mit.edu	36	1	46062785	46062785	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	46062785	46062785	C	G	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	missense	c.271	p.L91V	1	NULL	"HMMPfam_DUF1908,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	-	no_errors
MAST2	23139	broad.mit.edu	36	1	46262069	46262069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	46262069	46262069	G	A	SNP	MAST2	NM_015112	human	genbank	54_36p	1	validated	missense	c.1610	p.R537H	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
POMGNT1	55624	broad.mit.edu	36	1	46431602	46431602	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	46431602	46431602	G	C	SNP	POMGNT1	NM_017739	human	genbank	54_36p	-1	reviewed	missense	c.1072	p.H358D	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_GNT-I"	-	no_errors
LRRC41	10489	broad.mit.edu	36	1	46517267	46517267	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	46517267	46517267	G	A	SNP	LRRC41	NM_006369	human	genbank	54_36p	-1	validated	missense	c.2296	p.H766Y	1	superfamily_RNI-like	"superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
LRRC41	10489	broad.mit.edu	36	1	46524584	46524584	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	46524584	46524584	C	T	SNP	LRRC41	NM_006369	human	genbank	54_36p	-1	validated	missense	c.532	p.E178K	0.98	NULL	"HMMSmart_SM00368,superfamily_RNI-like"	-	no_errors
KNCN	148930	broad.mit.edu	36	1	46789436	46789436	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	46789436	46789436	C	A	SNP	KNCN	NM_001097611	human	genbank	54_36p	-1	provisional	silent	c.39	p.L13	1	NULL	NULL	-	no_errors
CYP4B1	1580	broad.mit.edu	36	1	47052562	47052562	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	47052562	47052562	C	G	SNP	CYP4B1	NM_001099772	human	genbank	54_36p	1	reviewed	silent	c.870	p.L290	0.99	"superfamily_Cytochrome_P450,HMMPfam_p450"	"superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4A11	1579	broad.mit.edu	36	1	47173847	47173847	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	47173847	47173847	G	A	SNP	CYP4A11	NM_000778	human	genbank	54_36p	-1	reviewed	silent	c.570	p.S190	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4A11	1579	broad.mit.edu	36	1	47175040	47175040	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	47175040	47175040	C	G	SNP	CYP4A11	NM_000778	human	genbank	54_36p	-1	reviewed	missense	c.393	p.L131F	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4A22	284541	broad.mit.edu	36	1	47380453	47380453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	47380453	47380453	C	T	SNP	CYP4A22	NM_001010969	human	genbank	54_36p	1	reviewed	missense	c.469	p.P157S	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CMPK1	51727	broad.mit.edu	36	1	47611278	47611278	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	47611278	47611278	G	T	SNP	CMPK1	NM_016308	human	genbank	54_36p	1	validated	missense	c.383	p.R128I	1	"superfamily_SSF52540,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE"	"superfamily_SSF52540,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE"	-	no_errors
SLC5A9	200010	broad.mit.edu	36	1	48463001	48463001	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	48463001	48463001	C	T	SNP	SLC5A9	NM_001011547	human	genbank	54_36p	1	validated	nonsense	c.160	p.R54*	1	NULL	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1"	-	no_errors
AGBL4	84871	broad.mit.edu	36	1	49283865	49283865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	49283865	49283865	C	T	SNP	AGBL4	NM_032785	human	genbank	54_36p	-1	validated	missense	c.17	p.R6Q	1	"HMMPfam_Peptidase_M14,superfamily_SSF53187"	"HMMPfam_Peptidase_M14,superfamily_SSF53187"	-	no_errors
CDKN2C	1031	broad.mit.edu	36	1	51208750	51208750	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	51208750	51208750	C	G	SNP	CDKN2C	NM_001262	human	genbank	54_36p	1	reviewed	missense	c.122	p.A41G	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
CDKN2C	1031	broad.mit.edu	36	1	51212213	51212213	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	51212213	51212213	G	A	SNP	CDKN2C	NM_001262	human	genbank	54_36p	1	reviewed	missense	c.190	p.D64N	0.96	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
OSBPL9	114883	broad.mit.edu	36	1	51952316	51952316	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	51952316	51952316	C	A	SNP	OSBPL9	NM_148909	human	genbank	54_36p	1	reviewed	missense	c.295	p.L99I	1	"HMMPfam_PH,HMMSmart_PH"	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
CC2D1B	200014	broad.mit.edu	36	1	52595956	52595956	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	52595956	52595956	G	A	SNP	CC2D1B	NM_032449	human	genbank	54_36p	-1	validated	missense	c.1600	p.R534W	0.03	NULL	"HMMSmart_SM00685,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
ORC1	4998	broad.mit.edu	36	1	52631834	52631834	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	52631834	52631834	G	C	SNP	ORC1L	NM_004153	human	genbank	54_36p	-1	reviewed	missense	c.951	p.I317M	0.06	NULL	"HMMPfam_BAH,HMMSmart_BAH,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF46785,HMMPfam_Cdc6_C"	-	no_errors
ZYG11B	79699	broad.mit.edu	36	1	53040373	53040373	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	53040373	53040373	A	T	SNP	ZYG11B	NM_024646	human	genbank	54_36p	1	validated	missense	c.1669	p.I557F	1	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_RNI-like"	-	no_errors
SCP2	6342	broad.mit.edu	36	1	53226381	53226381	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	53226381	53226381	C	T	SNP	SCP2	NM_002979	human	genbank	54_36p	1	reviewed	missense	c.1066	p.P356S	1	"HMMPfam_Thiolase_C,superfamily_Thiolase-like,PatternScan_THIOLASE_2"	"HMMPfam_Thiolase_N,superfamily_Thiolase-like,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,superfamily_Sterol carrier protein SCP,HMMPfam_SCP2"	-	no_errors
PODN	127435	broad.mit.edu	36	1	53312904	53312904	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	53312904	53312904	A	C	SNP	PODN	NM_153703	human	genbank	54_36p	1	validated	missense	c.589	p.N197H	1	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,superfamily_SSF52047"	-	no_errors
PODN	127435	broad.mit.edu	36	1	53315557	53315557	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	53315557	53315557	G	A	SNP	PODN	NM_153703	human	genbank	54_36p	1	validated	missense	c.833	p.R278H	0.55	superfamily_SSF52058	"HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058"	-	no_errors
SLC1A7	6512	broad.mit.edu	36	1	53328074	53328074	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	53328074	53328074	G	C	SNP	SLC1A7	NM_006671	human	genbank	54_36p	-1	validated	silent	c.1347	p.A449	0.8	HMMPfam_SDF	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
GLIS1	148979	broad.mit.edu	36	1	53744907	53744908	+	Missense_Mutation	DNP	GT	GT	TG	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	53744907	53744908	GT	TG	DNP	GLIS1	NM_147193	human	genbank	54_36p	-1	validated	missense	c.1836_1835	p.H612P	1.000:1.000	NULL	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
SSBP3	23648	broad.mit.edu	36	1	54467080	54467080	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	54467080	54467080	A	T	SNP	SSBP3	NM_145716	human	genbank	54_36p	-1	validated	missense	c.935	p.M312K	1	HMMPfam_SSDP	"HMMSmart_SM00667,HMMPfam_SSDP"	-	no_errors
BSND	7809	broad.mit.edu	36	1	55246503	55246503	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	55246503	55246503	C	T	SNP	BSND	NM_057176	human	genbank	54_36p	1	reviewed	missense	c.577	p.P193S	1	NULL	NULL	-	no_errors
PCSK9	255738	broad.mit.edu	36	1	55284884	55284884	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	55284884	55284884	G	T	SNP	PCSK9	NM_174936	human	genbank	54_36p	1	reviewed	missense	c.500	p.R167L	0	superfamily_Subtilisin-like	"superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8"	-	no_errors
PCSK9	255738	broad.mit.edu	36	1	55299722	55299723	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	55299722	55299723	GG	AA	DNP	PCSK9	NM_174936	human	genbank	54_36p	1	reviewed	missense	c.1768_1769	p.G590N	0.002:0.002	NULL	"HMMPfam_Peptidase_S8,superfamily_Subtilisin-like,superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9"	-	no_errors
USP24	23358	broad.mit.edu	36	1	55363661	55363661	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	55363661	55363661	A	T	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	missense	c.3400	p.S1134T	1	NULL	"superfamily_Ubiquitin-like,PatternScan_SUGAR_TRANSPORT_1,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP24	23358	broad.mit.edu	36	1	55375897	55375897	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	55375897	55375897	T	C	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	missense	c.2600	p.E867G	1	superfamily_Ubiquitin-like	"HMMPfam_UCH,PatternScan_SUGAR_TRANSPORT_1,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like"	-	no_errors
USP24	23358	broad.mit.edu	36	1	55397282	55397282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	55397282	55397282	G	C	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	missense	c.748	p.P250A	1	NULL	"HMMPfam_UCH,PatternScan_SUGAR_TRANSPORT_1,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like"	-	no_errors
PRKAA2	5563	broad.mit.edu	36	1	56912766	56912766	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	56912766	56912766	T	A	SNP	PRKAA2	NM_006252	human	genbank	54_36p	1	validated	missense	c.219	p.H73Q	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PRKAA2	5563	broad.mit.edu	36	1	56945831	56945831	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	56945831	56945831	A	G	SNP	PRKAA2	NM_006252	human	genbank	54_36p	1	validated	missense	c.1516	p.T506A	0.03	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
C1orf168	199920	broad.mit.edu	36	1	56961914	56961914	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	56961914	56961914	T	C	SNP	C1orf168	NM_001004303	human	genbank	54_36p	-1	validated	missense	c.1909	p.K637E	0.78	NULL	superfamily_SH3-domain	-	no_errors
C1orf168	199920	broad.mit.edu	36	1	56978974	56978974	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	56978974	56978974	A	G	SNP	C1orf168	NM_001004303	human	genbank	54_36p	-1	validated	missense	c.1687	p.S563P	0.75	NULL	superfamily_SH3-domain	-	no_errors
C8A	731	broad.mit.edu	36	1	57113214	57113214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	57113214	57113214	G	A	SNP	C8A	NM_000562	human	genbank	54_36p	1	reviewed	missense	c.176	p.R59Q	1	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1"	"PatternScan_EGF_2,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN,superfamily_SSF57196,PatternScan_EGF_1"	-	no_errors
C8B	732	broad.mit.edu	36	1	57187956	57187956	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	57187956	57187956	G	C	SNP	C8B	NM_000066	human	genbank	54_36p	-1	reviewed	missense	c.724	p.R242G	0.14	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMPfam_MACPF,HMMSmart_SM00457,PatternScan_MAC_PERFORIN,PatternScan_EGF_1"	-	no_errors
DAB1	1600	broad.mit.edu	36	1	57249422	57249422	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	57249422	57249422	C	A	SNP	DAB1	NM_021080	human	genbank	54_36p	-1	reviewed	missense	c.1556	p.S519I	1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID"	-	no_errors
DAB1	1600	broad.mit.edu	36	1	57253287	57253287	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	57253287	57253287	G	T	SNP	DAB1	NM_021080	human	genbank	54_36p	-1	reviewed	missense	c.1301	p.P434H	1	NULL	"HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	-	no_errors
DAB1	1600	broad.mit.edu	36	1	57253676	57253676	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	57253676	57253676	G	A	SNP	DAB1	NM_021080	human	genbank	54_36p	-1	reviewed	silent	c.912	p.G304	1	NULL	"HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	-	no_errors
C1orf87	127795	broad.mit.edu	36	1	60278292	60278292	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	60278292	60278292	C	T	SNP	C1orf87	NM_152377	human	genbank	54_36p	-1	predicted	missense	c.632	p.G211E	1	superfamily_EF-hand	superfamily_EF-hand	-	no_errors
TM2D1	83941	broad.mit.edu	36	1	61947587	61947587	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	61947587	61947587	A	C	SNP	TM2D1	NM_032027	human	genbank	54_36p	-1	reviewed	splice_site	c.347+2	e3+2	1	-	-	-	no_errors
INADL	10207	broad.mit.edu	36	1	62001353	62001353	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	62001353	62001353	T	C	SNP	INADL	NM_176877	human	genbank	54_36p	1	reviewed	silent	c.103	p.L35	0.78	"HMMPfam_L27_2,HMMSmart_SM00569,superfamily_L27 domain"	"HMMPfam_L27_2,HMMSmart_SM00569,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
INADL	10207	broad.mit.edu	36	1	62004545	62004545	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	62004545	62004545	C	T	SNP	INADL	NM_176877	human	genbank	54_36p	1	reviewed	missense	c.196	p.H66Y	0.53	"HMMSmart_SM00569,superfamily_L27 domain"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00569,HMMPfam_L27_2,superfamily_L27 domain"	-	no_errors
L1TD1	54596	broad.mit.edu	36	1	62448356	62448356	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	62448356	62448356	A	G	SNP	L1TD1	NM_019079	human	genbank	54_36p	1	validated	missense	c.1322	p.E441G	0	NULL	HMMPfam_Transposase_22	-	no_errors
KANK4	163782	broad.mit.edu	36	1	62512126	62512126	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	62512126	62512126	A	T	SNP	KANK4	NM_181712	human	genbank	54_36p	-1	validated	missense	c.1238	p.M413K	0	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
KANK4	163782	broad.mit.edu	36	1	62513112	62513112	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	62513112	62513112	T	C	SNP	KANK4	NM_181712	human	genbank	54_36p	-1	validated	silent	c.252	p.A84	0.03	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
DOCK7	85440	broad.mit.edu	36	1	62869514	62869514	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	62869514	62869514	C	T	SNP	DOCK7	NM_033407	human	genbank	54_36p	-1	validated	missense	c.1267	p.E423K	1	NULL	HMMPfam_Ded_cyto	-	no_errors
ROR1	4919	broad.mit.edu	36	1	64416902	64416902	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	64416902	64416902	A	G	SNP	ROR1	NM_005012	human	genbank	54_36p	1	validated	missense	c.2590	p.S864G	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CACHD1	57685	broad.mit.edu	36	1	64919545	64919545	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	64919545	64919545	G	A	SNP	CACHD1	NM_020925	human	genbank	54_36p	1	validated	missense	c.3270	p.M1090I	1	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Cache_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
JAK1	3716	broad.mit.edu	36	1	65095951	65095951	+	Silent	SNP	G	G	A	rs55788790	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	65095951	65095951	G	A	SNP	JAK1	NM_002227	human	genbank	54_36p	-1	reviewed	silent	c.1434	p.T478	0.53	"superfamily_SSF55550,HMMSmart_SH2"	"PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
PDE4B	5142	broad.mit.edu	36	1	66601809	66601809	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	66601809	66601809	G	T	SNP	PDE4B	NM_001037341	human	genbank	54_36p	1	reviewed	silent	c.1251	p.S417	0.88	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I"	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
SGIP1	84251	broad.mit.edu	36	1	66920155	66920155	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	66920155	66920155	C	A	SNP	SGIP1	NM_032291	human	genbank	54_36p	1	validated	missense	c.830	p.A277D	1	NULL	HMMPfam_SAFF	-	no_errors
SGIP1	84251	broad.mit.edu	36	1	66927510	66927510	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	66927510	66927510	A	T	SNP	SGIP1	NM_032291	human	genbank	54_36p	1	validated	silent	c.1407	p.P469	0.99	NULL	HMMPfam_SAFF	-	no_errors
SGIP1	84251	broad.mit.edu	36	1	66978959	66978959	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	66978959	66978959	G	A	SNP	SGIP1	NM_032291	human	genbank	54_36p	1	validated	silent	c.2265	p.K755	1	NULL	HMMPfam_SAFF	-	no_errors
WDR78	79819	broad.mit.edu	36	1	67163048	67163048	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	67163048	67163048	A	T	SNP	WDR78	NM_024763	human	genbank	54_36p	-1	validated	missense	c.55	p.W19R	0.01	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
C1orf141	400757	broad.mit.edu	36	1	67331662	67331662	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	67331662	67331662	G	C	SNP	C1orf141	NM_001013674	human	genbank	54_36p	-1	predicted	missense	c.817	p.P273A	0	NULL	NULL	-	no_errors
IL12RB2	3595	broad.mit.edu	36	1	67589210	67589210	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Broad454			Illumina GAIIx	1	67589210	67589210	G	A	SNP	IL12RB2	NM_001559	human	genbank	54_36p	1	reviewed	missense	c.1108	p.G370R	0	superfamily_Fibronectin type III	"HMMPfam_Lep_receptor_Ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
GADD45A	1647	broad.mit.edu	36	1	67924773	67924773	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	67924773	67924773	A	G	SNP	GADD45A	NM_001924	human	genbank	54_36p	1	reviewed	missense	c.299	p.E100G	1	"superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae"	"superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae"	-	no_errors
RPE65	6121	broad.mit.edu	36	1	68677271	68677271	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	68677271	68677271	G	C	SNP	RPE65	NM_000329	human	genbank	54_36p	-1	reviewed	missense	c.940	p.H314D	1	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors
LRRC7	57554	broad.mit.edu	36	1	70030338	70030338	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	70030338	70030338	C	G	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.214	p.R72G	1	"superfamily_L domain-like,HMMSmart_SM00364"	"superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
LRRC7	57554	broad.mit.edu	36	1	70274829	70274829	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	70274829	70274829	G	C	SNP	LRRC7	NM_020794	human	genbank	54_36p	1	validated	missense	c.2108	p.R703P	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like"	-	no_errors
LRRC40	55631	broad.mit.edu	36	1	70423164	70423164	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	70423164	70423164	G	C	SNP	LRRC40	NM_017768	human	genbank	54_36p	-1	provisional	silent	c.429	p.L143	0.32	"superfamily_SSF52058,HMMPfam_LRR_1"	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
SRSF11	9295	broad.mit.edu	36	1	70488228	70488228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	70488228	70488228	G	C	SNP	SFRS11	NM_004768	human	genbank	54_36p	1	reviewed	missense	c.1028	p.R343T	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
SRSF11	9295	broad.mit.edu	36	1	70489053	70489053	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	70489053	70489053	G	T	SNP	SFRS11	NM_004768	human	genbank	54_36p	1	reviewed	nonsense	c.1432	p.E478*	1	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
ZRANB2	9406	broad.mit.edu	36	1	71305075	71305075	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	71305075	71305075	T	A	SNP	ZRANB2	NM_203350	human	genbank	54_36p	-1	validated	nonsense	c.901	p.R301*	1	NULL	"superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	-	no_errors
ZRANB2	9406	broad.mit.edu	36	1	71316933	71316933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	71316933	71316933	C	A	SNP	ZRANB2	NM_203350	human	genbank	54_36p	-1	validated	missense	c.103	p.G35C	1	"HMMPfam_zf-RanBP,HMMSmart_SM00547,superfamily_Znf265 first zinc-finger domain"	"HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_Znf265 first zinc-finger domain"	-	no_errors
LRRIQ3	127255	broad.mit.edu	36	1	74279941	74279941	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	74279941	74279941	C	G	SNP	LRRIQ3	NM_001105659	human	genbank	54_36p	-1	inferred	missense	c.1262	p.S421T	0	NULL	"superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1"	-	no_errors
LRRIQ3	127255	broad.mit.edu	36	1	74420873	74420873	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	74420873	74420873	A	G	SNP	LRRIQ3	NM_001105659	human	genbank	54_36p	-1	inferred	silent	c.510	p.L170	1	superfamily_Outer arm dynein light chain 1	"HMMPfam_LRR_1,superfamily_Outer arm dynein light chain 1"	-	no_errors
TNNI3K	51086	broad.mit.edu	36	1	74581390	74581390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	74581390	74581390	C	G	SNP	TNNI3K	NM_015978	human	genbank	54_36p	1	validated	missense	c.871	p.Q291E	1	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
TNNI3K	51086	broad.mit.edu	36	1	74592275	74592275	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	74592275	74592275	G	A	SNP	TNNI3K	NM_015978	human	genbank	54_36p	1	validated	missense	c.1051	p.G351S	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Pkinase_Tyr,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
C1orf173	127254	broad.mit.edu	36	1	74828082	74828082	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	74828082	74828082	T	G	SNP	C1orf173	NM_001002912	human	genbank	54_36p	-1	predicted	missense	c.1997	p.E666A	0	NULL	NULL	-	no_errors
LHX8	431707	broad.mit.edu	36	1	75395266	75395266	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	75395266	75395266	C	A	SNP	LHX8	NM_001001933	human	genbank	54_36p	1	validated	missense	c.911	p.P304Q	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
LHX8	431707	broad.mit.edu	36	1	75399099	75399099	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	75399099	75399099	A	C	SNP	LHX8	NM_001001933	human	genbank	54_36p	1	validated	silent	c.1002	p.S334	1	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
SLC44A5	204962	broad.mit.edu	36	1	75476848	75476848	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	75476848	75476848	C	G	SNP	SLC44A5	NM_152697	human	genbank	54_36p	-1	validated	missense	c.594	p.K198N	0.04	NULL	HMMPfam_DUF580	-	no_errors
RABGGTB	5876	broad.mit.edu	36	1	76032914	76032914	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	76032914	76032914	A	G	SNP	RABGGTB	NM_004582	human	genbank	54_36p	1	provisional	silent	c.987	p.L329	1	NULL	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Prenyltrans"	-	no_errors
ASB17	127247	broad.mit.edu	36	1	76170547	76170547	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	76170547	76170547	T	A	SNP	ASB17	NM_080868	human	genbank	54_36p	-1	validated	missense	c.18	p.K6N	0.96	NULL	HMMPfam_SOCS_box	-	no_errors
ST6GALNAC3	256435	broad.mit.edu	36	1	76552079	76552079	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	76552079	76552079	G	T	SNP	ST6GALNAC3	NM_152996	human	genbank	54_36p	1	provisional	missense	c.20	p.R7I	1	NULL	HMMPfam_Glyco_transf_29	-	no_errors
ST6GALNAC3	256435	broad.mit.edu	36	1	76650491	76650491	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	76650491	76650491	T	C	SNP	ST6GALNAC3	NM_152996	human	genbank	54_36p	1	provisional	missense	c.424	p.Y142H	0.98	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
PIGK	10026	broad.mit.edu	36	1	77392875	77392875	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	77392875	77392875	C	T	SNP	PIGK	NM_005482	human	genbank	54_36p	-1	reviewed	missense	c.833	p.S278N	1	HMMPfam_Peptidase_C13	HMMPfam_Peptidase_C13	-	no_errors
ZZZ3	26009	broad.mit.edu	36	1	77814395	77814395	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	77814395	77814395	A	G	SNP	ZZZ3	NM_015534	human	genbank	54_36p	-1	provisional	silent	c.2277	p.D759	1	NULL	"HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
ZZZ3	26009	broad.mit.edu	36	1	77870155	77870155	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	77870155	77870155	T	C	SNP	ZZZ3	NM_015534	human	genbank	54_36p	-1	provisional	silent	c.1473	p.E491	1	NULL	"HMMPfam_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding"	-	no_errors
FAM73A	374986	broad.mit.edu	36	1	78021524	78021524	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	78021524	78021524	C	A	SNP	FAM73A	NM_198549	human	genbank	54_36p	1	predicted	missense	c.95	p.A32D	1	NULL	HMMPfam_DUF2217	-	no_errors
FAM73A	374986	broad.mit.edu	36	1	78081625	78081625	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	78081625	78081625	G	T	SNP	FAM73A	NM_198549	human	genbank	54_36p	1	predicted	missense	c.941	p.G314V	0.97	HMMPfam_DUF2217	HMMPfam_DUF2217	-	no_errors
NEXN	91624	broad.mit.edu	36	1	78155936	78155936	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	78155936	78155936	G	T	SNP	NEXN	NM_144573	human	genbank	54_36p	1	validated	missense	c.125	p.R42M	1	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409"	-	no_errors
NEXN	91624	broad.mit.edu	36	1	78156487	78156487	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	78156487	78156487	G	T	SNP	NEXN	NM_144573	human	genbank	54_36p	1	validated	nonsense	c.388	p.E130*	1	NULL	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
DNAJB4	11080	broad.mit.edu	36	1	78254490	78254490	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	78254490	78254490	G	T	SNP	DNAJB4	NM_007034	human	genbank	54_36p	1	provisional	missense	c.985	p.V329L	1	"HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain"	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40/DnaJ peptide-binding domain,HMMPfam_DnaJ_C"	-	no_errors
GIPC2	54810	broad.mit.edu	36	1	78319011	78319011	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	78319011	78319011	G	A	SNP	GIPC2	NM_017655	human	genbank	54_36p	1	validated	missense	c.305	p.G102E	1	superfamily_PDZ	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
PTGFR	5737	broad.mit.edu	36	1	78731443	78731443	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	78731443	78731443	C	A	SNP	PTGFR	NM_000959	human	genbank	54_36p	1	reviewed	missense	c.427	p.H143N	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PTGFR	5737	broad.mit.edu	36	1	78731774	78731774	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	78731774	78731774	C	T	SNP	PTGFR	NM_000959	human	genbank	54_36p	1	reviewed	missense	c.758	p.A253V	0.82	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
IFI44	10561	broad.mit.edu	36	1	78888697	78888697	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	78888697	78888697	A	G	SNP	IFI44	NM_006417	human	genbank	54_36p	1	validated	missense	c.229	p.I77V	0	NULL	superfamily_SSF52540	-	no_errors
TTLL7	79739	broad.mit.edu	36	1	84180810	84180810	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	84180810	84180810	A	-	DEL	TTLL7	NM_024686	human	genbank	54_36p	-1	validated	frame_shift_del	c.647	p.L216fs	1	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	"(deletion:cds_exon[84180734,84180950])"	no_errors
DNASE2B	58511	broad.mit.edu	36	1	84636855	84636855	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	84636855	84636855	C	A	SNP	DNASE2B	NM_021233	human	genbank	54_36p	1	reviewed	missense	c.8	p.A3E	0.83	NULL	HMMPfam_DNase_II	-	no_errors
CTBS	1486	broad.mit.edu	36	1	84808932	84808932	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	84808932	84808932	T	C	SNP	CTBS	NM_004388	human	genbank	54_36p	-1	validated	silent	c.237	p.T79	1	"superfamily_(Trans)glycosidases,HMMSmart_SM00636"	"superfamily_(Trans)glycosidases,HMMSmart_SM00636,HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18"	-	no_errors
SSX2IP	117178	broad.mit.edu	36	1	84896645	84896645	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	84896645	84896645	C	T	SNP	SSX2IP	NM_014021	human	genbank	54_36p	-1	provisional	missense	c.1022	p.S341N	1	NULL	NULL	-	no_errors
SSX2IP	117178	broad.mit.edu	36	1	84900740	84900740	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	84900740	84900740	A	G	SNP	SSX2IP	NM_014021	human	genbank	54_36p	-1	provisional	silent	c.735	p.G245	0.61	NULL	NULL	-	no_errors
LPAR3	23566	broad.mit.edu	36	1	85103869	85103869	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	85103869	85103869	C	-	DEL	LPAR3	NM_012152	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.523	p.A175fs	0.02	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[85103656,85104391])"	no_errors
MCOLN2	255231	broad.mit.edu	36	1	85169778	85169778	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	85169778	85169778	A	G	SNP	MCOLN2	NM_153259	human	genbank	54_36p	-1	reviewed	missense	c.1397	p.F466S	1	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
MCOLN2	255231	broad.mit.edu	36	1	85169786	85169786	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	85169786	85169786	A	G	SNP	MCOLN2	NM_153259	human	genbank	54_36p	-1	reviewed	silent	c.1389	p.D463	1	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
WDR63	126820	broad.mit.edu	36	1	85311356	85311356	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	85311356	85311356	G	C	SNP	WDR63	NM_145172	human	genbank	54_36p	1	validated	missense	c.96	p.E32D	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ODF2L	57489	broad.mit.edu	36	1	86594815	86594815	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	86594815	86594815	G	A	SNP	ODF2L	NM_020729	human	genbank	54_36p	-1	validated	missense	c.1331	p.T444M	0.1	NULL	superfamily_tRNA-binding arm	-	no_errors
CLCA1	1179	broad.mit.edu	36	1	86731793	86731793	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	86731793	86731793	A	T	SNP	CLCA1	NM_001285	human	genbank	54_36p	1	reviewed	missense	c.1603	p.S535C	1	HMMPfam_DUF1973	"HMMPfam_CLCA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_DUF1973,PatternScan_ATPASE_GAMMA"	-	no_errors
CLCA4	22802	broad.mit.edu	36	1	86804090	86804090	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	86804090	86804090	C	T	SNP	CLCA4	NM_012128	human	genbank	54_36p	1	reviewed	silent	c.753	p.N251	0.01	HMMPfam_CLCA_N	"HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973"	-	no_errors
GTF2B	2959	broad.mit.edu	36	1	89098279	89098279	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89098279	89098279	G	A	SNP	GTF2B	NM_001514	human	genbank	54_36p	-1	reviewed	nonsense	c.409	p.R137*	1	"superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB"	"superfamily_Zinc beta-ribbon,HMMPfam_TFIIB_Zn_Ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB,PatternScan_TFIIB"	-	no_errors
CCBL2	56267	broad.mit.edu	36	1	89221358	89221358	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89221358	89221358	C	G	SNP	CCBL2	NM_019610	human	genbank	54_36p	-1	reviewed	missense	c.740	p.G247A	1	NULL	"HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1,HMMPfam_RBM1CTR"	-	no_errors
CCBL2	56267	broad.mit.edu	36	1	89221583	89221583	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	89221583	89221583	C	T	SNP	CCBL2	NM_019610	human	genbank	54_36p	-1	reviewed	missense	c.515	p.R172H	1	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_RBM1CTR,superfamily_SSF54928"	-	no_errors
GBP3	2635	broad.mit.edu	36	1	89251537	89251537	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89251537	89251537	G	A	SNP	GBP3	NM_018284	human	genbank	54_36p	-1	reviewed	nonsense	c.787	p.Q263*	0.98	superfamily_SSF52540	"superfamily_SSF52540,HMMPfam_GBP_C,superfamily_GBP"	-	no_errors
GBP6	163351	broad.mit.edu	36	1	89607795	89607795	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89607795	89607795	C	A	SNP	GBP6	NM_198460	human	genbank	54_36p	1	validated	missense	c.293	p.T98N	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
LRRC8B	23507	broad.mit.edu	36	1	89820905	89820905	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89820905	89820905	G	T	SNP	LRRC8B	NM_015350	human	genbank	54_36p	1	validated	silent	c.108	p.L36	1	NULL	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
LRRC8B	23507	broad.mit.edu	36	1	89822190	89822190	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89822190	89822190	C	G	SNP	LRRC8B	NM_015350	human	genbank	54_36p	1	validated	missense	c.1393	p.L465V	1	superfamily_SSF52058	"HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
LRRC8C	84230	broad.mit.edu	36	1	89952291	89952291	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89952291	89952291	T	G	SNP	LRRC8C	NM_032270	human	genbank	54_36p	1	validated	missense	c.1574	p.L525R	0.99	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
LRRC8C	84230	broad.mit.edu	36	1	89952954	89952954	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	89952954	89952954	C	T	SNP	LRRC8C	NM_032270	human	genbank	54_36p	1	validated	missense	c.2237	p.P746L	1	superfamily_L domain-like	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	-	no_errors
LRRC8D	55144	broad.mit.edu	36	1	90172512	90172512	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	90172512	90172512	C	A	SNP	LRRC8D	NM_018103	human	genbank	54_36p	1	validated	missense	c.1297	p.R433S	1	NULL	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
ZNF644	84146	broad.mit.edu	36	1	91177507	91177507	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	91177507	91177507	T	A	SNP	ZNF644	NM_201269	human	genbank	54_36p	-1	validated	silent	c.1992	p.T664	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF644	84146	broad.mit.edu	36	1	91178903	91178904	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	91178903	91178904	GA	TT	DNP	ZNF644	NM_201269	human	genbank	54_36p	-1	validated	missense	c.596_595	p.S199K	1.000:1.000	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CDC7	8317	broad.mit.edu	36	1	91746068	91746068	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	91746068	91746068	A	G	SNP	CDC7	NM_003503	human	genbank	54_36p	1	reviewed	missense	c.185	p.D62G	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CDC7	8317	broad.mit.edu	36	1	91762452	91762452	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	91762452	91762452	G	C	SNP	CDC7	NM_003503	human	genbank	54_36p	1	reviewed	missense	c.1597	p.E533Q	0.21	"HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
BTBD8	284697	broad.mit.edu	36	1	92340678	92340678	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	92340678	92340678	G	T	SNP	BTBD8	NM_183242	human	genbank	54_36p	1	validated	missense	c.408	p.K136N	0.32	"superfamily_POZ domain,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
C1orf146	388649	broad.mit.edu	36	1	92483776	92483806	+	Frame_Shift_Del	DEL	TTCAGAAGATAAAACTGAATAGTGATTCAGT	-	TTCAGAAGATAAAACTGAATAGTGATTCAGT	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	TTCAGAAGATAAAACTGAATAGTGATTCAGT	TTCAGAAGATAAAACTGAATAGTGATTCAGT	-	-	TTCAGAAGATAAAACTGAATAGTGATTCAGT	TTCAGAAGATAAAACTGAATAGTGATTCAGT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	92483776	92483806	TTCAGAAGATAAAACTGAATAGTGATTCAGT	-	DEL	C1orf146	NM_001012425	human	genbank	54_36p	1	validated	frame_shift_del	c.500_530	p.Q168fs	1.000:1.000:1.000:0.996:0.950:0.951:0.953:0.929:0.485:0.462:0.445:0.395:0.386:0.347:0.342:0.306:0.218:0.078:0.011:0.009:0.007:0.032:0.092:0.095:0.086:0.004:0.002:0.001:0.003:0.004:0.071	NULL	NULL	"(deletion:cds_exon[92483685,92483819])"	no_errors
GFI1	2672	broad.mit.edu	36	1	92721062	92721062	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	92721062	92721062	C	T	SNP	GFI1	NM_005263	human	genbank	54_36p	-1	reviewed	missense	c.245	p.R82Q	0.02	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2HC"	-	no_errors
MTF2	22823	broad.mit.edu	36	1	93353231	93353231	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	93353231	93353231	A	C	SNP	MTF2	NM_007358	human	genbank	54_36p	1	validated	missense	c.481	p.K161Q	1	superfamily_FYVE/PHD zinc finger	"HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
TMED5	50999	broad.mit.edu	36	1	93418292	93418292	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	93418292	93418292	G	C	SNP	TMED5	NM_016040	human	genbank	54_36p	-1	provisional	silent	c.96	p.L32	0.87	NULL	"HMMPfam_EMP24_GP25L,superfamily_SSF101576"	-	no_errors
DNTTIP2	30836	broad.mit.edu	36	1	94115352	94115352	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	94115352	94115352	G	A	SNP	DNTTIP2	NM_014597	human	genbank	54_36p	-1	provisional	nonsense	c.727	p.Q243*	0.01	NULL	HMMPfam_Fcf2	-	no_errors
ABCA4	24	broad.mit.edu	36	1	94267639	94267639	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	94267639	94267639	T	A	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.4489	p.T1497S	1	NULL	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA4	24	broad.mit.edu	36	1	94294785	94294785	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	94294785	94294785	G	T	SNP	ABCA4	NM_000350	human	genbank	54_36p	-1	reviewed	missense	c.2342	p.A781D	1	NULL	"HMMPfam_ABC_tran,HMMSmart_AAA,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
ARHGAP29	9411	broad.mit.edu	36	1	94417975	94417975	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	94417975	94417975	T	C	SNP	ARHGAP29	NM_004815	human	genbank	54_36p	-1	validated	missense	c.2374	p.M792V	0	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
RWDD3	25950	broad.mit.edu	36	1	95482369	95482369	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	95482369	95482369	G	C	SNP	RWDD3	NM_015485	human	genbank	54_36p	1	validated	missense	c.100	p.V34L	0.29	"HMMPfam_RWD,superfamily_UBC-like,HMMSmart_SM00591"	"HMMPfam_RWD,superfamily_UBC-like,HMMSmart_SM00591"	-	no_errors
DPYD	1806	broad.mit.edu	36	1	98066259	98066259	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	98066259	98066259	T	A	SNP	DPYD	NM_000110	human	genbank	54_36p	-1	reviewed	nonsense	c.232	p.R78*	1	superfamily_Helical_ferredxn	"superfamily_Helical_ferredxn,superfamily_SSF51971,HMMPfam_Pyr_redox_2,superfamily_SSF51395,HMMPfam_DHO_dh,superfamily_SSF54862,HMMPfam_Fer4,PatternScan_4FE4S_FER_1"	-	no_errors
SNX7	51375	broad.mit.edu	36	1	98929307	98929307	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	98929307	98929307	C	G	SNP	SNX7	NM_015976	human	genbank	54_36p	1	reviewed	missense	c.260	p.A87G	1	"superfamily_PX domain,HMMSmart_SM00312,HMMPfam_PX"	"superfamily_PX domain,HMMSmart_SM00312,HMMPfam_PX"	-	no_errors
LPPR4	9890	broad.mit.edu	36	1	99539933	99539933	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	99539933	99539933	T	A	SNP	LPPR4	NM_014839	human	genbank	54_36p	1	reviewed	missense	c.858	p.F286L	1	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	-	no_errors
LPPR4	9890	broad.mit.edu	36	1	99544192	99544192	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	99544192	99544192	T	A	SNP	LPPR4	NM_014839	human	genbank	54_36p	1	reviewed	missense	c.1330	p.S444T	0.99	NULL	"HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase"	-	no_errors
PALMD	54873	broad.mit.edu	36	1	99927002	99927002	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	99927002	99927002	G	C	SNP	PALMD	NM_017734	human	genbank	54_36p	1	validated	missense	c.598	p.D200H	0.98	HMMPfam_Paralemmin	HMMPfam_Paralemmin	-	no_errors
CCDC76	54482	broad.mit.edu	36	1	100386036	100386036	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	100386036	100386036	A	C	SNP	CCDC76	NM_019083	human	genbank	54_36p	1	provisional	splice_site	c.818-2	e10-2	1	-	-	-	no_errors
LRRC39	127495	broad.mit.edu	36	1	100398634	100398634	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	100398634	100398634	C	T	SNP	LRRC39	NM_144620	human	genbank	54_36p	-1	provisional	silent	c.195	p.L65	0.99	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
S1PR1	1901	broad.mit.edu	36	1	101477260	101477260	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	1	101477260	101477260	C	A	SNP	S1PR1	NM_001400	human	genbank	54_36p	1	reviewed	missense	c.132	p.S44R	0.78	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
S1PR1	1901	broad.mit.edu	36	1	101477918	101477918	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	101477918	101477918	G	A	SNP	S1PR1	NM_001400	human	genbank	54_36p	1	reviewed	missense	c.790	p.V264I	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
COL11A1	1301	broad.mit.edu	36	1	103177215	103177215	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	103177215	103177215	C	T	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	silent	c.3438	p.P1146	0.48	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
COL11A1	1301	broad.mit.edu	36	1	103242778	103242778	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	103242778	103242778	C	T	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	missense	c.1909	p.G637S	1	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
COL11A1	1301	broad.mit.edu	36	1	103263665	103263665	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	103263665	103263665	C	T	SNP	COL11A1	NM_080629	human	genbank	54_36p	-1	reviewed	silent	c.1026	p.E342	1	NULL	"HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
NTNG1	22854	broad.mit.edu	36	1	107668441	107668441	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	107668441	107668441	G	A	SNP	NTNG1	NM_014917	human	genbank	54_36p	1	provisional	missense	c.261	p.M87I	1	"HMMPfam_Laminin_N,HMMSmart_LamNT"	"HMMPfam_Laminin_N,HMMSmart_LamNT,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,HMMSmart_EGF,HMMPfam_EGF_2"	-	no_errors
NTNG1	22854	broad.mit.edu	36	1	107780840	107780840	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	107780840	107780840	A	C	SNP	NTNG1	ENST00000370068	human	ensembl	54_36p	1	known	missense	c.1286	p.H429P	1	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin"	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,PatternScan_EGF_1,HMMPfam_EGF_2,superfamily_EGF/Laminin"	-	no_errors
VAV3	10451	broad.mit.edu	36	1	108112631	108112631	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	108112631	108112631	T	C	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	silent	c.672	p.R224	1	"superfamily_Calponin-homology domain CH-domain,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	###############################################################################################################################################################################################################################################################	-	no_errors
VAV3	10451	broad.mit.edu	36	1	108308902	108308902	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	108308902	108308902	C	G	SNP	VAV3	NM_006113	human	genbank	54_36p	-1	reviewed	missense	c.113	p.R38P	1	"HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain"	###############################################################################################################################################################################################################################################################	-	no_errors
FNDC7	163479	broad.mit.edu	36	1	109075033	109075033	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	109075033	109075033	C	A	SNP	FNDC7	ENST00000370017	human	ensembl	54_36p	1	known	silent	c.1428	p.T476	0.02	"superfamily_Fibronectin type III,HMMSmart_SM00060"	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
STXBP3	6814	broad.mit.edu	36	1	109102718	109102718	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109102718	109102718	A	G	SNP	STXBP3	NM_007269	human	genbank	54_36p	1	validated	missense	c.322	p.I108V	0.99	"superfamily_Sec1-like,HMMPfam_Sec1"	"superfamily_Sec1-like,HMMPfam_Sec1"	-	no_errors
AKNAD1	254268	broad.mit.edu	36	1	109196514	109196514	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109196514	109196514	G	A	SNP	C1orf62	NM_152763	human	genbank	54_36p	-1	validated	missense	c.296	p.A99V	0	NULL	NULL	-	no_errors
C1orf194	127003	broad.mit.edu	36	1	109452069	109452069	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	109452069	109452069	G	A	SNP	C1orf194	ENST00000369948	human	ensembl	54_36p	-1	known	silent	c.195	p.P65	0.02	NULL	NULL	-	no_errors
KIAA1324	57535	broad.mit.edu	36	1	109508684	109508684	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109508684	109508684	C	A	SNP	KIAA1324	NM_020775	human	genbank	54_36p	1	validated	missense	c.315	p.D105E	1	superfamily_Growth factor receptor domain	"superfamily_Growth factor receptor domain,superfamily_Mannose 6-phosphate receptor domain"	-	no_errors
SARS	6301	broad.mit.edu	36	1	109580633	109580633	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	109580633	109580633	G	A	SNP	SARS	NM_006513	human	genbank	54_36p	1	reviewed	silent	c.1197	p.T399	0.95	superfamily_Class II aaRS and biotin synthetases	"HMMPfam_Seryl_tRNA_N,superfamily_tRNA-binding arm,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b"	-	no_errors
CELSR2	1952	broad.mit.edu	36	1	109594631	109594631	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	109594631	109594631	C	A	SNP	CELSR2	NM_001408	human	genbank	54_36p	1	reviewed	missense	c.407	p.P136Q	0.03	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CELSR2	1952	broad.mit.edu	36	1	109595278	109595278	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109595278	109595278	C	T	SNP	CELSR2	NM_001408	human	genbank	54_36p	1	reviewed	missense	c.1054	p.R352C	0.35	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	###############################################################################################################################################################################################################################################################	-	no_errors
CELSR2	1952	broad.mit.edu	36	1	109595695	109595695	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109595695	109595695	G	C	SNP	CELSR2	NM_001408	human	genbank	54_36p	1	reviewed	missense	c.1471	p.V491L	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	###############################################################################################################################################################################################################################################################	-	no_errors
CELSR2	1952	broad.mit.edu	36	1	109596284	109596284	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109596284	109596284	C	T	SNP	CELSR2	NM_001408	human	genbank	54_36p	1	reviewed	missense	c.2060	p.A687V	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	###############################################################################################################################################################################################################################################################	-	no_errors
MYBPHL	343263	broad.mit.edu	36	1	109641626	109641626	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	109641626	109641626	T	G	SNP	MYBPHL	NM_001010985	human	genbank	54_36p	-1	validated	missense	c.371	p.Q124P	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
SORT1	6272	broad.mit.edu	36	1	109671666	109671666	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109671666	109671666	G	A	SNP	SORT1	NM_002959	human	genbank	54_36p	-1	reviewed	silent	c.1452	p.A484	0.99	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602"	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,PatternScan_HEMOCYANIN_2"	-	no_errors
SYPL2	284612	broad.mit.edu	36	1	109820954	109820954	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109820954	109820954	C	T	SNP	SYPL2	NM_001040709	human	genbank	54_36p	1	validated	silent	c.288	p.C96	0.98	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
ATXN7L2	127002	broad.mit.edu	36	1	109831160	109831160	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109831160	109831160	C	T	SNP	ATXN7L2	NM_153340	human	genbank	54_36p	1	validated	missense	c.307	p.H103Y	1	NULL	HMMPfam_SCA7	-	no_errors
AMIGO1	57463	broad.mit.edu	36	1	109852263	109852263	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109852263	109852263	C	T	SNP	AMIGO1	NM_020703	human	genbank	54_36p	-1	validated	silent	c.795	p.L265	0.63	"superfamily_SSF52058,HMMSmart_LRRCT"	"superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
GNAI3	2773	broad.mit.edu	36	1	109917913	109917913	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	109917913	109917913	G	A	SNP	GNAI3	NM_006496	human	genbank	54_36p	1	validated	silent	c.150	p.V50	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	-	no_errors
GSTM1	2944	broad.mit.edu	36	1	110032380	110032381	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	110032380	110032381	GA	TC	DNP	GSTM1	NM_000561	human	genbank	54_36p	1	reviewed	missense	c.102_103	p.M35L	0.000:0.000	"superfamily_Thioredoxin-like,HMMPfam_GST_N"	"superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C"	-	no_errors
GSTM5	2949	broad.mit.edu	36	1	110059274	110059274	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	110059274	110059274	G	A	SNP	GSTM5	NM_000851	human	genbank	54_36p	1	reviewed	splice_site	c.457-1	e7-1	1	-	-	-	no_errors
EPS8L3	79574	broad.mit.edu	36	1	110102785	110102785	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	110102785	110102785	G	C	SNP	EPS8L3	NM_139053	human	genbank	54_36p	-1	reviewed	missense	c.488	p.P163R	0.02	NULL	"HMMPfam_PTB,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
EPS8L3	79574	broad.mit.edu	36	1	110103833	110103833	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	110103833	110103833	A	G	SNP	EPS8L3	NM_139053	human	genbank	54_36p	-1	reviewed	missense	c.245	p.I82T	0.99	HMMPfam_PTB	"HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PTB"	-	no_errors
UBL4B	164153	broad.mit.edu	36	1	110457186	110457186	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	110457186	110457186	G	-	DEL	UBL4B	NM_203412	human	genbank	54_36p	1	validated	frame_shift_del	c.507	p.A170fs	0	NULL	"PatternScan_UBIQUITIN_1,HMMSmart_UBQ,superfamily_SSF54236,HMMPfam_ubiquitin"	"(deletion:cds_exon[110456680,110457204])"	no_errors
RBM15	64783	broad.mit.edu	36	1	110684843	110684843	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	110684843	110684843	A	G	SNP	RBM15	NM_022768	human	genbank	54_36p	1	validated	silent	c.1293	p.K431	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,superfamily_SPOC domain-like,HMMPfam_SPOC"	-	no_errors
RBM15	64783	broad.mit.edu	36	1	110685238	110685238	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	110685238	110685238	G	C	SNP	RBM15	NM_022768	human	genbank	54_36p	1	validated	missense	c.1688	p.G563A	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_SPOC,superfamily_SPOC domain-like,superfamily_RNA-binding domain RBD"	-	no_errors
SLC16A4	9122	broad.mit.edu	36	1	110723108	110723108	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	110723108	110723108	G	C	SNP	SLC16A4	NM_004696	human	genbank	54_36p	-1	provisional	missense	c.920	p.S307C	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
HBXIP	10542	broad.mit.edu	36	1	110745685	110745685	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	110745685	110745685	G	T	SNP	HBXIP	NM_006402	human	genbank	54_36p	-1	reviewed	missense	c.505	p.H169N	1	NULL	NULL	-	no_errors
KCNA10	3744	broad.mit.edu	36	1	110862799	110862799	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	110862799	110862799	G	A	SNP	KCNA10	NM_005549	human	genbank	54_36p	-1	reviewed	missense	c.134	p.S45F	1	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA3	3738	broad.mit.edu	36	1	111017919	111017919	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	111017919	111017919	C	T	SNP	KCNA3	NM_002232	human	genbank	54_36p	-1	reviewed	missense	c.1036	p.E346K	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
CEPT1	10390	broad.mit.edu	36	1	111505352	111505352	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	111505352	111505352	T	C	SNP	CEPT1	NM_001007794	human	genbank	54_36p	1	reviewed	silent	c.540	p.D180	1	HMMPfam_CDP-OH_P_transf	"HMMPfam_CDP-OH_P_transf,PatternScan_CDP_ALCOHOL_P_TRANSF"	-	no_errors
C1orf88	128344	broad.mit.edu	36	1	111692773	111692773	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	111692773	111692773	A	C	SNP	C1orf88	NM_181643	human	genbank	54_36p	1	validated	missense	c.371	p.K124T	0.04	NULL	NULL	-	no_errors
OVGP1	5016	broad.mit.edu	36	1	111765514	111765515	+	Frame_Shift_Ins	INS	-	A	-	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	-	-	A	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	111765514	111765515	-	A	INS	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.810_809	p.K271fs	0.013:0.111	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	-	no_errors
OVGP1	5016	broad.mit.edu	36	1	111765549	111765549	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	111765549	111765549	C	T	SNP	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	missense	c.775	p.G259R	1	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain"	-	no_errors
KCND3	3752	broad.mit.edu	36	1	112325794	112325794	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	112325794	112325794	A	G	SNP	KCND3	NM_004980	human	genbank	54_36p	-1	reviewed	missense	c.1078	p.Y360H	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
CTTNBP2NL	55917	broad.mit.edu	36	1	112798625	112798625	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	112798625	112798625	G	T	SNP	CTTNBP2NL	NM_018704	human	genbank	54_36p	1	validated	missense	c.362	p.R121L	1	HMMPfam_CortBP2	HMMPfam_CortBP2	-	no_errors
WNT2B	7482	broad.mit.edu	36	1	112861398	112861398	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	112861398	112861398	G	T	SNP	WNT2B	NM_024494	human	genbank	54_36p	1	reviewed	missense	c.814	p.A272S	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
MOV10	4343	broad.mit.edu	36	1	113019167	113019167	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	113019167	113019167	C	G	SNP	MOV10	NM_020963	human	genbank	54_36p	1	validated	missense	c.110	p.T37S	0.2	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ER_TARGET"	-	no_errors
MOV10	4343	broad.mit.edu	36	1	113038243	113038243	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	113038243	113038243	G	T	SNP	MOV10	NM_020963	human	genbank	54_36p	1	validated	missense	c.1221	p.Q407H	0.06	NULL	"PatternScan_ER_TARGET,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RHOC	389	broad.mit.edu	36	1	113047244	113047244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	113047244	113047244	G	T	SNP	RHOC	NM_001042678	human	genbank	54_36p	-1	reviewed	missense	c.177	p.D59E	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00173,HMMSmart_SM00174"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00173,HMMSmart_SM00174"	-	no_errors
FAM19A3	284467	broad.mit.edu	36	1	113067209	113067232	+	In_Frame_Del	DEL	GCAACCGGAACCGCATCGAGGAGC	-	GCAACCGGAACCGCATCGAGGAGC	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	GCAACCGGAACCGCATCGAGGAGC	GCAACCGGAACCGCATCGAGGAGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	113067209	113067232	GCAACCGGAACCGCATCGAGGAGC	-	DEL	FAM19A3	NM_001004440	human	genbank	54_36p	1	reviewed	in_frame_del	c.164_187	p.NRNRIEER56in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.940:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	"(deletion:cds_exon[113067161,113067310])"	no_errors
LRIG2	9860	broad.mit.edu	36	1	113468234	113468234	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	113468234	113468234	T	G	SNP	LRIG2	NM_014813	human	genbank	54_36p	1	provisional	missense	c.3186	p.S1062R	0.1	NULL	"superfamily_SSF52047,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
MAGI3	260425	broad.mit.edu	36	1	113993436	113993436	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	113993436	113993436	G	C	SNP	MAGI3	NM_152900	human	genbank	54_36p	1	validated	missense	c.2210	p.G737A	1	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	"superfamily_PDZ,HMMSmart_PDZ,HMMSmart_GuKc,superfamily_SSF52540,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ"	-	no_errors
MAGI3	260425	broad.mit.edu	36	1	114003284	114003284	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	114003284	114003284	C	G	SNP	MAGI3	NM_152900	human	genbank	54_36p	1	validated	missense	c.2689	p.L897V	0.87	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ"	"HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540"	-	no_errors
MAGI3	260425	broad.mit.edu	36	1	114015900	114015900	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	114015900	114015900	G	A	SNP	MAGI3	NM_152900	human	genbank	54_36p	1	validated	missense	c.2837	p.G946E	1	superfamily_PDZ	"HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540"	-	no_errors
RSBN1	54665	broad.mit.edu	36	1	114156376	114156376	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	114156376	114156376	G	T	SNP	RSBN1	NM_018364	human	genbank	54_36p	-1	validated	missense	c.182	p.A61E	1	NULL	NULL	-	no_errors
AP4B1	10717	broad.mit.edu	36	1	114240158	114240158	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	114240158	114240158	C	A	SNP	AP4B1	NM_006594	human	genbank	54_36p	-1	validated	silent	c.1536	p.R512	0.74	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N"	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N,HMMPfam_B2-adapt-app_C"	-	no_errors
HIPK1	204851	broad.mit.edu	36	1	114284761	114284761	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	114284761	114284761	C	A	SNP	HIPK1	NM_198268	human	genbank	54_36p	1	reviewed	missense	c.233	p.A78D	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
AMPD1	270	broad.mit.edu	36	1	115018116	115018116	+	Silent	SNP	G	G	A	rs34778674	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	115018116	115018116	G	A	SNP	AMPD1	NM_000036	human	genbank	54_36p	-1	reviewed	silent	c.1911	p.F637	1	"superfamily_SSF51556,HMMPfam_A_deaminase"	"superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE"	-	no_errors
NRAS	4893	broad.mit.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	C	rs11554290	by-hapmap	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	115058052	115058052	T	C	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.182	p.Q61R	1	"HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NRAS	4893	broad.mit.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	C	rs11554290	by-hapmap	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	115058052	115058052	T	C	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.182	p.Q61R	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	-	no_errors
CSDE1	7812	broad.mit.edu	36	1	115064767	115064767	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	115064767	115064767	C	A	SNP	CSDE1	NM_001007553	human	genbank	54_36p	-1	validated	missense	c.1968	p.L656F	1	NULL	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK,PatternScan_PEROXIDASE_2"	-	no_errors
SLC22A15	55356	broad.mit.edu	36	1	116363748	116363748	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	116363748	116363748	C	A	SNP	SLC22A15	NM_018420	human	genbank	54_36p	1	validated	missense	c.287	p.S96Y	0.66	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	-	no_errors
IGSF3	3321	broad.mit.edu	36	1	116923710	116923710	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	116923710	116923710	C	G	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.3221	p.R1074P	1	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig"	-	no_errors
IGSF3	3321	broad.mit.edu	36	1	116923765	116923765	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	116923765	116923765	C	T	SNP	IGSF3	NM_001542	human	genbank	54_36p	-1	validated	missense	c.3166	p.V1056M	1	"HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
CD101	9398	broad.mit.edu	36	1	117355939	117355939	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	117355939	117355939	G	C	SNP	IGSF2	NM_004258	human	genbank	54_36p	1	validated	missense	c.669	p.Q223H	0.01	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
MAN1A2	10905	broad.mit.edu	36	1	117712505	117712505	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	117712505	117712505	C	T	SNP	MAN1A2	NM_006699	human	genbank	54_36p	1	validated	silent	c.177	p.D59	1	NULL	"superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47"	-	no_errors
FAM46C	54855	broad.mit.edu	36	1	117967330	117967330	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	117967330	117967330	A	T	SNP	FAM46C	NM_017709	human	genbank	54_36p	1	validated	missense	c.317	p.Q106L	1	HMMPfam_DUF1693	HMMPfam_DUF1693	-	no_errors
GDAP2	54834	broad.mit.edu	36	1	118225983	118225983	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	118225983	118225983	G	A	SNP	GDAP2	NM_017686	human	genbank	54_36p	-1	validated	silent	c.1287	p.P429	1	"superfamily_CRAL/TRIO domain,HMMSmart_SM00516"	"superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_CRAL/TRIO domain,HMMSmart_SM00516"	-	no_errors
SPAG17	200162	broad.mit.edu	36	1	118425746	118425746	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	118425746	118425746	A	C	SNP	SPAG17	NM_206996	human	genbank	54_36p	-1	validated	missense	c.1805	p.F602C	1	NULL	NULL	-	no_errors
TBX15	6913	broad.mit.edu	36	1	119228927	119228927	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	119228927	119228927	T	A	SNP	TBX15	NM_152380	human	genbank	54_36p	-1	validated	missense	c.1442	p.Y481F	1	NULL	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
HAO2	51179	broad.mit.edu	36	1	119737936	119737936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	119737936	119737936	C	T	SNP	HAO2	NM_001005783	human	genbank	54_36p	1	reviewed	missense	c.1006	p.R336W	1	"superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh"	"superfamily_FMN-linked oxidoreductases,HMMPfam_FMN_dh,PatternScan_FMN_HYDROXY_ACID_DH_1"	-	no_errors
HSD3B2	3284	broad.mit.edu	36	1	119766472	119766472	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	119766472	119766472	T	C	SNP	HSD3B2	NM_000198	human	genbank	54_36p	1	validated	silent	c.825	p.F275	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3Beta_HSD"	-	no_errors
HSD3B1	3283	broad.mit.edu	36	1	119858396	119858396	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	119858396	119858396	C	A	SNP	HSD3B1	NM_000862	human	genbank	54_36p	1	validated	missense	c.727	p.P243T	1	"superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD"	"superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD"	-	no_errors
ZNF697	100130667	broad.mit.edu	36	1	119967025	119967025	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	119967025	119967025	C	T	SNP	LOC100130667	XM_001715213	human	genbank	54_36p	1	model	missense	c.583	p.R195C	1	NULL	NULL	-	no_errors
PHGDH	26227	broad.mit.edu	36	1	120086007	120086007	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	120086007	120086007	G	A	SNP	PHGDH	NM_006623	human	genbank	54_36p	1	reviewed	silent	c.1173	p.V391	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HMGCS2	3158	broad.mit.edu	36	1	120108340	120108340	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	120108340	120108340	C	T	SNP	HMGCS2	NM_005518	human	genbank	54_36p	-1	validated	nonsense	c.537	p.W179*	1	"HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like"	"HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like,PatternScan_HMG_COA_SYNTHASE,HMMPfam_HMG_CoA_synt_C"	-	no_errors
REG4	83998	broad.mit.edu	36	1	120143975	120143975	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	120143975	120143975	G	C	SNP	REG4	NM_032044	human	genbank	54_36p	-1	validated	missense	c.199	p.L67V	0.91	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
ADAM30	11085	broad.mit.edu	36	1	120239173	120239173	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	120239173	120239173	G	C	SNP	ADAM30	NM_021794	human	genbank	54_36p	-1	reviewed	missense	c.1310	p.A437G	0.01	"HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)"	###############################################################################################################################################################################################################################################################	-	no_errors
PDE4DIP	9659	broad.mit.edu	36	1	143565954	143565959	+	In_Frame_Del	DEL	TCGCTC	-	TCGCTC	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	TCGCTC	TCGCTC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	143565954	143565959	TCGCTC	-	DEL	PDE4DIP	NM_014644	human	genbank	54_36p	-1	validated	in_frame_del	c.6873_6868	p.ER2290in_frame_del	0.024:0.018:0.153:0.669:0.953:0.974	NULL	HMMPfam_Microtub_assoc	"(deletion:cds_exon[143565875,143566013])"	no_errors
PDE4DIP	9659	broad.mit.edu	36	1	143590640	143590640	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	143590640	143590640	C	A	SNP	PDE4DIP	NM_014644	human	genbank	54_36p	-1	validated	silent	c.4167	p.S1389	1	NULL	HMMPfam_Microtub_assoc	-	no_errors
PDE4DIP	9659	broad.mit.edu	36	1	143663557	143663557	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	143663557	143663557	C	T	SNP	PDE4DIP	NM_014644	human	genbank	54_36p	-1	validated	splice_site	c.518+1	e4+1	1	-	-	-	no_errors
PDE4DIP	9659	broad.mit.edu	36	1	143706014	143706014	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	143706014	143706014	G	A	SNP	PDE4DIP	NM_014644	human	genbank	54_36p	-1	validated	silent	c.75	p.R25	1	HMMPfam_Microtub_assoc	HMMPfam_Microtub_assoc	-	no_errors
ITGA10	8515	broad.mit.edu	36	1	144245273	144245273	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	144245273	144245273	G	A	SNP	ITGA10	NM_003637	human	genbank	54_36p	1	reviewed	missense	c.1562	p.R521H	0.11	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	-	no_errors
ANKRD35	148741	broad.mit.edu	36	1	144274407	144274407	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	144274407	144274407	A	T	SNP	ANKRD35	NM_144698	human	genbank	54_36p	1	validated	missense	c.2738	p.K913I	0.02	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKRD35	148741	broad.mit.edu	36	1	144274409	144274409	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	144274409	144274409	G	A	SNP	ANKRD35	NM_144698	human	genbank	54_36p	1	validated	missense	c.2740	p.E914K	0.89	NULL	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
RNF115	27246	broad.mit.edu	36	1	144393403	144393403	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	144393403	144393403	G	A	SNP	RNF115	NM_014455	human	genbank	54_36p	1	validated	missense	c.452	p.G151E	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
FMO5	2330	broad.mit.edu	36	1	145139448	145139448	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	145139448	145139448	T	G	SNP	FMO5	NM_001461	human	genbank	54_36p	-1	reviewed	missense	c.1093	p.T365P	1	"HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
FMO5	2330	broad.mit.edu	36	1	145139682	145139682	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	145139682	145139682	C	T	SNP	FMO5	NM_001461	human	genbank	54_36p	-1	reviewed	missense	c.859	p.D287N	1	"HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
CHD1L	9557	broad.mit.edu	36	1	145218467	145218467	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	145218467	145218467	A	T	SNP	CHD1L	NM_004284	human	genbank	54_36p	1	validated	missense	c.1684	p.S562C	0.02	NULL	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
ACP6	51205	broad.mit.edu	36	1	145593007	145593007	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	145593007	145593007	T	C	SNP	ACP6	NM_016361	human	genbank	54_36p	-1	validated	missense	c.706	p.K236E	0.78	"superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A"	"superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1"	-	no_errors
GJA8	2703	broad.mit.edu	36	1	145846993	145846993	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	145846993	145846993	C	T	SNP	GJA8	NM_005267	human	genbank	54_36p	1	validated	missense	c.287	p.A96V	1	HMMPfam_Connexin	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin50"	-	no_errors
NBPF14	25832	broad.mit.edu	36	1	146471213	146471213	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	146471213	146471213	G	A	SNP	NBPF14	NM_015383	human	genbank	54_36p	-1	predicted	missense	c.2725	p.L909F	0	NULL	HMMPfam_DUF1220	-	no_errors
FCGR1A	2209	broad.mit.edu	36	1	148028411	148028412	+	Missense_Mutation	DNP	AA	AA	CG	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	148028411	148028412	AA	CG	DNP	FCGR1A	NM_000566	human	genbank	54_36p	1	reviewed	missense	c.737_738	p.Q246P	0.480:0.327	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
HIST2H2BE	8349	broad.mit.edu	36	1	148124459	148124459	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	148124459	148124459	A	G	SNP	HIST2H2BE	NM_003528	human	genbank	54_36p	-1	reviewed	missense	c.356	p.V119A	1	"superfamily_Histone-fold,HMMSmart_SM00427"	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST2H2AC	8338	broad.mit.edu	36	1	148125221	148125221	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	148125221	148125221	C	T	SNP	HIST2H2AC	NM_003517	human	genbank	54_36p	1	reviewed	nonsense	c.73	p.Q25*	1	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
SV2A	9900	broad.mit.edu	36	1	148147672	148147672	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	148147672	148147672	G	A	SNP	SV2A	NM_014849	human	genbank	54_36p	-1	validated	missense	c.1255	p.R419C	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_2"	-	no_errors
SF3B4	10262	broad.mit.edu	36	1	148164355	148164355	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	148164355	148164355	G	A	SNP	SF3B4	NM_005850	human	genbank	54_36p	-1	reviewed	missense	c.910	p.P304S	1	NULL	"HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1"	-	no_errors
CA14	23632	broad.mit.edu	36	1	148502146	148502146	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	148502146	148502146	C	T	SNP	CA14	NM_012113	human	genbank	54_36p	1	reviewed	missense	c.644	p.S215L	1	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	-	no_errors
RPRD2	23248	broad.mit.edu	36	1	148710426	148710426	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	148710426	148710426	G	A	SNP	RPRD2	NM_015203	human	genbank	54_36p	1	validated	missense	c.2267	p.G756D	1	NULL	"HMMSmart_RPR,HMMPfam_DUF618,superfamily_ENTH_VHS"	-	no_errors
TARS2	80222	broad.mit.edu	36	1	148736708	148736708	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	148736708	148736708	C	T	SNP	TARS2	NM_025150	human	genbank	54_36p	1	provisional	missense	c.1099	p.H367Y	1	"superfamily_SSF55681,HMMPfam_tRNA-synt_2b"	"HMMPfam_TGS,superfamily_TGS-like,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,superfamily_SSF55681,HMMPfam_tRNA-synt_2b,superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon"	-	no_errors
ECM1	1893	broad.mit.edu	36	1	148750178	148750178	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	148750178	148750178	A	G	SNP	ECM1	NM_004425	human	genbank	54_36p	1	reviewed	silent	c.588	p.P196	0.99	HMMPfam_ECM1	"HMMPfam_ECM1,superfamily_Serum albumin-like"	-	no_errors
ADAMTSL4	54507	broad.mit.edu	36	1	148797711	148797711	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	148797711	148797711	T	A	SNP	ADAMTSL4	NM_019032	human	genbank	54_36p	1	reviewed	missense	c.2521	p.C841S	1	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
SETDB1	9869	broad.mit.edu	36	1	149190067	149190067	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	149190067	149190067	T	C	SNP	SETDB1	NM_012432	human	genbank	54_36p	1	reviewed	missense	c.2090	p.I697T	1	"superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET"	"HMMSmart_TUDOR,HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,superfamily_SSF82199,HMMSmart_PreSET,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET"	-	no_errors
FAM63A	55793	broad.mit.edu	36	1	149237234	149237234	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	149237234	149237234	G	A	SNP	FAM63A	NM_018379	human	genbank	54_36p	-1	validated	missense	c.1121	p.P374L	0.02	NULL	HMMPfam_DUF544	-	no_errors
PRUNE	58497	broad.mit.edu	36	1	149273181	149273181	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	149273181	149273181	G	C	SNP	PRUNE	NM_021222	human	genbank	54_36p	1	provisional	missense	c.1209	p.E403D	1	NULL	"HMMPfam_DHH,superfamily_DHH phosphoesterases,HMMPfam_DHHA2,PatternScan_GLYCOSYL_HYDROL_F5"	-	no_errors
C1orf56	54964	broad.mit.edu	36	1	149287040	149287040	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	149287040	149287040	C	G	SNP	C1orf56	NM_017860	human	genbank	54_36p	1	predicted	silent	c.93	p.T31	0.02	NULL	NULL	-	no_errors
SEMA6C	10500	broad.mit.edu	36	1	149377178	149377178	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	149377178	149377178	G	C	SNP	SEMA6C	NM_030913	human	genbank	54_36p	-1	reviewed	missense	c.575	p.A192G	0.95	"superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema"	"superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,HMMPfam_PSI,superfamily_Plexin repeat"	-	no_errors
PI4KB	5298	broad.mit.edu	36	1	149541337	149541337	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	149541337	149541337	G	C	SNP	PI4KB	NM_002651	human	genbank	54_36p	-1	provisional	missense	c.1618	p.P540A	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
POGZ	23126	broad.mit.edu	36	1	149667507	149667507	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	149667507	149667507	C	T	SNP	POGZ	NM_015100	human	genbank	54_36p	-1	reviewed	missense	c.575	p.G192D	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMPfam_CenpB-DNA-bind,superfamily_Homeodomain-like,HMMSmart_SM00674,HMMPfam_DDE"	-	no_errors
CGN	57530	broad.mit.edu	36	1	149763795	149763795	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	149763795	149763795	C	A	SNP	CGN	NM_020770	human	genbank	54_36p	1	validated	missense	c.1423	p.L475I	0.99	NULL	HMMPfam_Myosin_tail_1	-	no_errors
SNX27	81609	broad.mit.edu	36	1	149907704	149907704	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	149907704	149907704	A	G	SNP	SNX27	NM_030918	human	genbank	54_36p	1	reviewed	missense	c.1118	p.N373S	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PX,HMMSmart_PX,HMMPfam_PX,HMMPfam_RA"	-	no_errors
TDRKH	11022	broad.mit.edu	36	1	150022058	150022058	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150022058	150022058	C	A	SNP	TDRKH	NM_001083963	human	genbank	54_36p	-1	validated	missense	c.65	p.G22V	0.99	NULL	"superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333"	-	no_errors
LINGO4	339398	broad.mit.edu	36	1	150040530	150040530	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150040530	150040530	T	C	SNP	LINGO4	NM_001004432	human	genbank	54_36p	-1	provisional	silent	c.1275	p.A425	0.84	"superfamily_SSF48726,HMMPfam_I-set"	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
RORC	6097	broad.mit.edu	36	1	150052047	150052047	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150052047	150052047	G	A	SNP	RORC	NM_005060	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.H429Y	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
TCHHL1	126637	broad.mit.edu	36	1	150326075	150326075	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150326075	150326075	T	G	SNP	TCHHL1	NM_001008536	human	genbank	54_36p	-1	provisional	missense	c.707	p.D236A	0	NULL	"PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100"	-	no_errors
TCHH	7062	broad.mit.edu	36	1	150350676	150350676	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150350676	150350676	C	T	SNP	TCHH	NM_007113	human	genbank	54_36p	-1	provisional	silent	c.1641	p.E547	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1"	-	no_errors
HRNR	388697	broad.mit.edu	36	1	150459028	150459028	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150459028	150459028	C	A	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	missense	c.1701	p.R567S	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK"	-	no_errors
HRNR	388697	broad.mit.edu	36	1	150459981	150459981	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150459981	150459981	C	T	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	missense	c.748	p.G250S	0	NULL	"PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG	2312	broad.mit.edu	36	1	150543512	150543512	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150543512	150543512	C	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.10474	p.D3492Y	0	NULL	"superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin"	-	no_errors
FLG	2312	broad.mit.edu	36	1	150545247	150545247	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150545247	150545247	T	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.8739	p.R2913S	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	broad.mit.edu	36	1	150545296	150545296	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150545296	150545296	C	T	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.8690	p.S2897N	0	HMMPfam_Filaggrin	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	broad.mit.edu	36	1	150549287	150549287	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150549287	150549287	G	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.4699	p.R1567W	0	HMMPfam_Filaggrin	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	broad.mit.edu	36	1	150552420	150552420	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150552420	150552420	T	G	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	silent	c.1566	p.S522	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG	2312	broad.mit.edu	36	1	150554440	150554440	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150554440	150554440	C	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.117	p.K39N	0	"HMMPfam_S_100,superfamily_SSF47473"	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
FLG2	388698	broad.mit.edu	36	1	150590300	150590300	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150590300	150590300	G	T	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.6586	p.H2196N	0.01	NULL	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,HMMPfam_Filaggrin"	-	no_errors
FLG2	388698	broad.mit.edu	36	1	150590679	150590679	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150590679	150590679	G	A	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	silent	c.6207	p.H2069	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	broad.mit.edu	36	1	150592486	150592486	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150592486	150592486	G	A	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.4400	p.T1467I	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	broad.mit.edu	36	1	150593692	150593692	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150593692	150593692	C	A	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.3194	p.G1065V	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
FLG2	388698	broad.mit.edu	36	1	150595170	150595170	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150595170	150595170	C	G	SNP	FLG2	NM_001014342	human	genbank	54_36p	-1	provisional	missense	c.1716	p.L572F	0	NULL	"PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473"	-	no_errors
CRNN	49860	broad.mit.edu	36	1	150649344	150649344	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150649344	150649344	G	T	SNP	CRNN	NM_016190	human	genbank	54_36p	-1	reviewed	missense	c.838	p.Q280K	0.16	NULL	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
LCE5A	254910	broad.mit.edu	36	1	150750732	150750732	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150750732	150750732	C	T	SNP	LCE5A	NM_178438	human	genbank	54_36p	1	validated	missense	c.98	p.P33L	0.28	NULL	NULL	-	no_errors
CRCT1	54544	broad.mit.edu	36	1	150754708	150754708	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150754708	150754708	C	T	SNP	CRCT1	NM_019060	human	genbank	54_36p	1	validated	silent	c.225	p.C75	0.03	NULL	NULL	-	no_errors
LCE2C	353140	broad.mit.edu	36	1	150915333	150915333	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	150915333	150915333	T	G	SNP	LCE2C	NM_178429	human	genbank	54_36p	1	validated	missense	c.218	p.L73R	0.4	NULL	NULL	-	no_errors
LCE2B	26239	broad.mit.edu	36	1	150926273	150926273	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150926273	150926273	C	T	SNP	LCE2B	NM_014357	human	genbank	54_36p	1	reviewed	silent	c.330	p.C110	0.99	NULL	NULL	-	no_errors
KPRP	448834	broad.mit.edu	36	1	150999246	150999246	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	150999246	150999246	C	T	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	silent	c.558	p.G186	0.02	NULL	NULL	-	no_errors
KPRP	448834	broad.mit.edu	36	1	151000175	151000175	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	151000175	151000175	G	A	SNP	KPRP	NM_001025231	human	genbank	54_36p	1	provisional	missense	c.1487	p.R496H	0	NULL	NULL	-	no_errors
IVL	3713	broad.mit.edu	36	1	151149425	151149425	+	Silent	SNP	G	G	A	rs11205136	"by-cluster,by-2hit-2allele"	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151149425	151149425	G	A	SNP	IVL	NM_005547	human	genbank	54_36p	1	reviewed	silent	c.528	p.P176	0	HMMPfam_Involucrin	"PatternScan_INVOLUCRIN,HMMPfam_Involucrin_N,HMMPfam_Involucrin"	-	no_errors
SPRR3	6707	broad.mit.edu	36	1	151242154	151242154	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	151242154	151242154	C	G	SNP	SPRR3	NM_001097589	human	genbank	54_36p	1	validated	missense	c.34	p.P12A	0.05	HMMPfam_Cornifin	HMMPfam_Cornifin	-	no_errors
SPRR1B	6699	broad.mit.edu	36	1	151271566	151271637	+	In_Frame_Del	DEL	TGCCACCCCAAGGTGCCTGAGCCCTGCCACCCCAAAGTGCCCGAGCCCTGCCAGCCCAAGGTTCCAGAGCCA	-	TGCCACCCCAAGGTGCCTGAGCCCTGCCACCCCAAAGTGCCCGAGCCCTGCCAGCCCAAGGTTCCAGAGCCA	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	TGCCACCCCAAGGTGCCTGAGCCCTGCCACCCCAAAGTGCCCGAGCCCTGCCAGCCCAAGGTTCCAGAGCCA	TGCCACCCCAAGGTGCCTGAGCCCTGCCACCCCAAAGTGCCCGAGCCCTGCCAGCCCAAGGTTCCAGAGCCA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	151271566	151271637	TGCCACCCCAAGGTGCCTGAGCCCTGCCACCCCAAAGTGCCCGAGCCCTGCCAGCCCAAGGTTCCAGAGCCA	-	DEL	SPRR1B	NM_003125	human	genbank	54_36p	1	provisional	in_frame_del	c.121_192	p.KVPEPCHPKVPEPCQPKVPEPCHP44in_frame_del	###############################################################################################################################################################################################################################################################	HMMPfam_Cornifin	HMMPfam_Cornifin	"(deletion:cds_exon[151271446,151271715])"	no_errors
SPRR2A	6700	broad.mit.edu	36	1	151295623	151295623	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151295623	151295623	G	T	SNP	SPRR2A	NM_005988	human	genbank	54_36p	-1	validated	missense	c.213	p.S71R	0.98	NULL	NULL	-	no_errors
SPRR2E	6704	broad.mit.edu	36	1	151332732	151332732	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151332732	151332732	C	T	SNP	SPRR2E	NM_001024209	human	genbank	54_36p	-1	validated	silent	c.120	p.K40	0.01	NULL	NULL	-	no_errors
PGLYRP3	114771	broad.mit.edu	36	1	151541551	151541551	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151541551	151541551	G	T	SNP	PGLYRP3	NM_052891	human	genbank	54_36p	-1	provisional	missense	c.686	p.S229Y	0.97	"HMMSmart_PGRP,superfamily_Amidase_2,HMMSmart_Ami_2,HMMPfam_Amidase_2"	"superfamily_Amidase_2,HMMSmart_PGRP,HMMPfam_Amidase_2,HMMSmart_Ami_2"	-	no_errors
PGLYRP4	57115	broad.mit.edu	36	1	151579548	151579548	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151579548	151579548	G	A	SNP	PGLYRP4	NM_020393	human	genbank	54_36p	-1	validated	missense	c.757	p.R253C	0.4	"HMMSmart_SM00701,superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00644,HMMPfam_Amidase_2"	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	-	no_errors
PGLYRP4	57115	broad.mit.edu	36	1	151584458	151584458	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151584458	151584458	G	A	SNP	PGLYRP4	NM_020393	human	genbank	54_36p	-1	validated	missense	c.164	p.T55M	0.02	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701"	"HMMPfam_Amidase_2,HMMSmart_SM00644,superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701"	-	no_errors
S100A6	6277	broad.mit.edu	36	1	151774380	151774380	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151774380	151774380	G	T	SNP	S100A6	NM_014624	human	genbank	54_36p	-1	reviewed	silent	c.60	p.S20	0.81	"superfamily_SSF47473,HMMPfam_S_100"	"superfamily_SSF47473,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1"	-	no_errors
S100A2	6273	broad.mit.edu	36	1	151800573	151800573	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151800573	151800573	T	C	SNP	S100A2	NM_005978	human	genbank	54_36p	-1	reviewed	missense	c.260	p.N87S	0.98	superfamily_EF-hand	"superfamily_EF-hand,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1"	-	no_errors
NPR1	4881	broad.mit.edu	36	1	151926389	151926389	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151926389	151926389	G	A	SNP	NPR1	NM_000906	human	genbank	54_36p	1	validated	silent	c.2025	p.K675	1	"HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
INTS3	65123	broad.mit.edu	36	1	151991504	151991504	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	151991504	151991504	C	T	SNP	INTS3	NM_023015	human	genbank	54_36p	1	validated	silent	c.855	p.F285	1	HMMPfam_DUF2356	HMMPfam_DUF2356	-	no_errors
CRTC2	200186	broad.mit.edu	36	1	152187415	152187415	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	152187415	152187415	C	A	SNP	CRTC2	NM_181715	human	genbank	54_36p	-1	provisional	missense	c.1876	p.G626C	0.98	NULL	NULL	-	no_errors
CRTC2	200186	broad.mit.edu	36	1	152188416	152188416	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152188416	152188416	T	A	SNP	CRTC2	NM_181715	human	genbank	54_36p	-1	provisional	silent	c.1473	p.P491	0.81	NULL	NULL	-	no_errors
CRTC2	200186	broad.mit.edu	36	1	152192375	152192375	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152192375	152192375	G	A	SNP	CRTC2	NM_181715	human	genbank	54_36p	-1	provisional	nonsense	c.598	p.R200*	1	NULL	NULL	-	no_errors
ATP8B2	57198	broad.mit.edu	36	1	152569979	152569980	+	Missense_Mutation	DNP	AG	AG	GC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	152569979	152569980	AG	GC	DNP	ATP8B2	NM_020452	human	genbank	54_36p	1	reviewed	missense	c.254_255	p.Q85R	1.000:1.000	superfamily_SSF81665	"superfamily_SSF81665,superfamily_SSF81653,HMMPfam_E1-E2_ATPase,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3"	-	no_errors
ATP8B2	57198	broad.mit.edu	36	1	152582580	152582580	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152582580	152582580	T	C	SNP	ATP8B2	NM_020452	human	genbank	54_36p	1	reviewed	missense	c.1769	p.L590P	1	"superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665"	"HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665"	-	no_errors
SHE	126669	broad.mit.edu	36	1	152728203	152728203	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152728203	152728203	C	A	SNP	SHE	NM_001010846	human	genbank	54_36p	-1	provisional	missense	c.972	p.E324D	1	NULL	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	-	no_errors
SHE	126669	broad.mit.edu	36	1	152738320	152738320	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152738320	152738320	A	G	SNP	SHE	NM_001010846	human	genbank	54_36p	-1	provisional	missense	c.610	p.Y204H	1	NULL	"HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550"	-	no_errors
TDRD10	126668	broad.mit.edu	36	1	152783129	152783129	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152783129	152783129	T	G	SNP	TDRD10	NM_001098475	human	genbank	54_36p	1	validated	missense	c.570	p.H190Q	0	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT"	-	no_errors
ADAR	103	broad.mit.edu	36	1	152825367	152825367	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	152825367	152825367	T	C	SNP	ADAR	NM_001111	human	genbank	54_36p	-1	reviewed	missense	c.3116	p.K1039R	1	"HMMSmart_SM00552,HMMPfam_A_deamin"	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00550,HMMPfam_z-alpha,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00552,HMMPfam_A_deamin"	-	no_errors
ADAR	103	broad.mit.edu	36	1	152829018	152829018	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152829018	152829018	G	A	SNP	ADAR	NM_001111	human	genbank	54_36p	-1	reviewed	missense	c.2507	p.T836I	0.83	NULL	"HMMPfam_z-alpha,HMMSmart_SM00550,HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_A_deamin,HMMSmart_SM00552,superfamily_Winged helix DNA-binding domain,superfamily_dsRNA-binding domain-like"	-	no_errors
ADAR	103	broad.mit.edu	36	1	152840787	152840787	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152840787	152840787	C	A	SNP	ADAR	NM_001111	human	genbank	54_36p	-1	reviewed	missense	c.955	p.A319S	0.99	"HMMPfam_z-alpha,HMMSmart_SM00550,superfamily_Winged helix DNA-binding domain"	"HMMPfam_z-alpha,HMMSmart_SM00550,HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_A_deamin,HMMSmart_SM00552,superfamily_Winged helix DNA-binding domain,superfamily_dsRNA-binding domain-like"	-	no_errors
ADAR	103	broad.mit.edu	36	1	152840993	152840993	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	152840993	152840993	G	A	SNP	ADAR	NM_001111	human	genbank	54_36p	-1	reviewed	missense	c.749	p.A250V	0	NULL	"HMMPfam_z-alpha,HMMSmart_SM00550,HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_A_deamin,HMMSmart_SM00552,superfamily_Winged helix DNA-binding domain,superfamily_dsRNA-binding domain-like"	-	no_errors
FLAD1	80308	broad.mit.edu	36	1	153227530	153227530	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153227530	153227530	C	A	SNP	FLAD1	NM_025207	human	genbank	54_36p	1	reviewed	missense	c.698	p.T233K	0.71	superfamily_Molybdenum cofactor biosynthesis proteins	"PatternScan_CARBAMOYLTRANSFERASE,superfamily_Molybdenum cofactor biosynthesis proteins,HMMPfam_MoCF_biosynth,superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_PAPS_reduct"	-	no_errors
FLAD1	80308	broad.mit.edu	36	1	153229299	153229299	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	153229299	153229299	A	C	SNP	FLAD1	NM_025207	human	genbank	54_36p	1	reviewed	missense	c.1306	p.I436L	1	"HMMPfam_PAPS_reduct,superfamily_Adenine nucleotide alpha hydrolases-like"	"HMMPfam_MoCF_biosynth,superfamily_Molybdenum cofactor biosynthesis proteins,HMMPfam_PAPS_reduct,PatternScan_CARBAMOYLTRANSFERASE,superfamily_Adenine nucleotide alpha hydrolases-like"	-	no_errors
ZBTB7B	51043	broad.mit.edu	36	1	153254223	153254223	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	153254223	153254223	G	A	SNP	ZBTB7B	NM_015872	human	genbank	54_36p	1	validated	missense	c.463	p.D155N	0.13	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2"	-	no_errors
DCST2	127579	broad.mit.edu	36	1	153272231	153272231	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153272231	153272231	G	A	SNP	DCST2	NM_144622	human	genbank	54_36p	-1	validated	silent	c.402	p.T134	0.01	NULL	HMMPfam_DC_STAMP	-	no_errors
DCST1	149095	broad.mit.edu	36	1	153280863	153280863	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153280863	153280863	G	A	SNP	DCST1	NM_152494	human	genbank	54_36p	1	validated	silent	c.798	p.K266	0.65	NULL	HMMPfam_DC_STAMP	-	no_errors
EFNA4	1945	broad.mit.edu	36	1	153308043	153308043	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	153308043	153308043	T	C	SNP	EFNA4	NM_005227	human	genbank	54_36p	1	reviewed	missense	c.560	p.L187S	0.99	NULL	"HMMPfam_Ephrin,superfamily_Cupredoxins,PatternScan_EPHRIN"	-	no_errors
THBS3	7059	broad.mit.edu	36	1	153439255	153439255	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153439255	153439255	T	C	SNP	THBS3	NM_007112	human	genbank	54_36p	-1	reviewed	missense	c.929	p.N310S	1	"superfamily_EGF/Laminin,HMMSmart_SM00181"	"HMMSmart_SM00210,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_TSP_C"	-	no_errors
GBA	2629	broad.mit.edu	36	1	153473786	153473786	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	153473786	153473786	T	C	SNP	GBA	NM_000157	human	genbank	54_36p	-1	reviewed	silent	c.969	p.Q323	0.77	"HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases"	"superfamily_Glycosyl hydrolase domain,HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases"	-	no_errors
FAM189B	10712	broad.mit.edu	36	1	153484651	153484651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153484651	153484651	C	G	SNP	C1orf2	NM_006589	human	genbank	54_36p	-1	validated	silent	c.1647	p.R549	0.99	NULL	NULL	-	no_errors
SCAMP3	10067	broad.mit.edu	36	1	153494040	153494040	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153494040	153494040	C	T	SNP	SCAMP3	NM_005698	human	genbank	54_36p	-1	reviewed	missense	c.550	p.A184T	1	HMMPfam_SCAMP	HMMPfam_SCAMP	-	no_errors
SCAMP3	10067	broad.mit.edu	36	1	153498143	153498143	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153498143	153498143	C	G	SNP	SCAMP3	NM_005698	human	genbank	54_36p	-1	reviewed	missense	c.73	p.A25P	1	NULL	HMMPfam_SCAMP	-	no_errors
SCAMP3	10067	broad.mit.edu	36	1	153498553	153498553	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153498553	153498553	C	G	SNP	SCAMP3	NM_005698	human	genbank	54_36p	-1	reviewed	missense	c.14	p.R5T	0.02	NULL	HMMPfam_SCAMP	-	no_errors
PKLR	5313	broad.mit.edu	36	1	153530996	153530996	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153530996	153530996	C	A	SNP	PKLR	NM_000298	human	genbank	54_36p	-1	reviewed	missense	c.866	p.R289L	1	"superfamily_Phosphoenolpyruvate/pyruvate domain,HMMPfam_PK"	"superfamily_Phosphoenolpyruvate/pyruvate domain,HMMPfam_PK,superfamily_PK beta-barrel domain-like,PatternScan_PYRUVATE_KINASE,superfamily_PK C-terminal domain-like,HMMPfam_PK_C"	-	no_errors
RUSC1	23623	broad.mit.edu	36	1	153561519	153561519	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153561519	153561519	C	G	SNP	RUSC1	NM_001105203	human	genbank	54_36p	1	validated	missense	c.1459	p.L487V	1	NULL	"HMMPfam_RUN,HMMSmart_SM00593,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
ASH1L	55870	broad.mit.edu	36	1	153715605	153715605	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	153715605	153715605	A	G	SNP	ASH1L	NM_018489	human	genbank	54_36p	-1	reviewed	missense	c.3680	p.F1227S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ASH1L	55870	broad.mit.edu	36	1	153718701	153718701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153718701	153718701	G	A	SNP	ASH1L	NM_018489	human	genbank	54_36p	-1	reviewed	missense	c.584	p.T195I	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DAP3	7818	broad.mit.edu	36	1	153965498	153965498	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153965498	153965498	C	T	SNP	DAP3	NM_004632	human	genbank	54_36p	1	reviewed	silent	c.645	p.S215	1	HMMPfam_DAP3	HMMPfam_DAP3	-	no_errors
GON4L	54856	broad.mit.edu	36	1	153988537	153988537	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	153988537	153988537	G	C	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	nonsense	c.6308	p.S2103*	0.2	NULL	"superfamily_PAH2 domain,HMMPfam_PAH,superfamily_Homeodomain-like"	-	no_errors
GON4L	54856	broad.mit.edu	36	1	153993394	153993394	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	153993394	153993394	G	A	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	silent	c.5496	p.I1832	1	NULL	"HMMPfam_PAH,superfamily_PAH2 domain,superfamily_Homeodomain-like"	-	no_errors
GON4L	54856	broad.mit.edu	36	1	153998658	153998658	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	153998658	153998658	C	T	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	missense	c.4858	p.D1620N	1	superfamily_PAH2 domain	"HMMPfam_PAH,superfamily_PAH2 domain,superfamily_Homeodomain-like"	-	no_errors
GON4L	54856	broad.mit.edu	36	1	154002179	154002179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154002179	154002179	C	T	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	missense	c.3709	p.D1237N	0.26	NULL	"HMMPfam_PAH,superfamily_PAH2 domain,superfamily_Homeodomain-like"	-	no_errors
GON4L	54856	broad.mit.edu	36	1	154009625	154009625	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154009625	154009625	G	A	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	missense	c.2351	p.A784V	0.26	NULL	"HMMPfam_PAH,superfamily_PAH2 domain,superfamily_Homeodomain-like"	-	no_errors
GON4L	54856	broad.mit.edu	36	1	154057945	154057945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154057945	154057945	G	C	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	missense	c.907	p.H303D	1	NULL	"HMMPfam_PAH,superfamily_PAH2 domain,superfamily_Homeodomain-like"	-	no_errors
SYT11	23208	broad.mit.edu	36	1	154104980	154104980	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154104980	154104980	C	A	SNP	SYT11	NM_152280	human	genbank	54_36p	1	validated	missense	c.635	p.T212N	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
ARHGEF2	9181	broad.mit.edu	36	1	154188380	154188380	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154188380	154188380	T	C	SNP	ARHGEF2	NM_004723	human	genbank	54_36p	-1	reviewed	missense	c.2042	p.N681S	1	NULL	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
LMNA	4000	broad.mit.edu	36	1	154374944	154374944	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	154374944	154374944	C	A	SNP	LMNA	NM_170707	human	genbank	54_36p	1	reviewed	missense	c.1740	p.N580K	1	NULL	"HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	-	no_errors
SLC25A44	9673	broad.mit.edu	36	1	154446693	154446693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154446693	154446693	G	C	SNP	SLC25A44	NM_014655	human	genbank	54_36p	1	validated	missense	c.792	p.Q264H	1	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	-	no_errors
PAQR6	79957	broad.mit.edu	36	1	154481219	154481219	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	154481219	154481219	G	A	SNP	PAQR6	NM_024897	human	genbank	54_36p	-1	provisional	silent	c.399	p.S133	1	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors
SMG5	23381	broad.mit.edu	36	1	154496995	154496995	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154496995	154496995	T	C	SNP	SMG5	NM_015327	human	genbank	54_36p	-1	validated	silent	c.2154	p.E718	1	NULL	"HMMPfam_EST1,HMMSmart_PINc"	-	no_errors
C1orf85	112770	broad.mit.edu	36	1	154531240	154531240	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154531240	154531240	G	A	SNP	C1orf85	NM_144580	human	genbank	54_36p	-1	provisional	silent	c.312	p.P104	0.02	NULL	NULL	-	no_errors
C1orf85	112770	broad.mit.edu	36	1	154531311	154531311	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154531311	154531311	C	T	SNP	C1orf85	NM_144580	human	genbank	54_36p	-1	provisional	missense	c.241	p.V81I	1	NULL	NULL	-	no_errors
CCT3	7203	broad.mit.edu	36	1	154548617	154548617	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	154548617	154548617	C	G	SNP	CCT3	NM_005998	human	genbank	54_36p	-1	reviewed	missense	c.994	p.V332L	1	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029"	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_SSF54849,superfamily_SSF52029"	-	no_errors
CCT3	7203	broad.mit.edu	36	1	154555309	154555309	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	154555309	154555309	G	C	SNP	CCT3	NM_005998	human	genbank	54_36p	-1	reviewed	missense	c.733	p.L245V	1	"HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849"	"PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849"	-	no_errors
RHBG	57127	broad.mit.edu	36	1	154614686	154614686	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154614686	154614686	C	A	SNP	RHBG	NM_020407	human	genbank	54_36p	1	reviewed	missense	c.545	p.S182Y	1	"HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)"	"HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)"	-	no_errors
RHBG	57127	broad.mit.edu	36	1	154618297	154618297	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154618297	154618297	G	T	SNP	RHBG	NM_020407	human	genbank	54_36p	1	reviewed	missense	c.917	p.G306V	1	"HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)"	"HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)"	-	no_errors
IQGAP3	128239	broad.mit.edu	36	1	154770282	154770282	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154770282	154770282	C	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	nonsense	c.3883	p.E1295*	1	"superfamily_Rho_GAP,HMMSmart_RasGAP"	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C"	-	no_errors
IQGAP3	128239	broad.mit.edu	36	1	154773631	154773631	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154773631	154773631	G	C	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	missense	c.3388	p.L1130V	1	"HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RasGAP_C,HMMPfam_CH,HMMSmart_CH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_Calponin-homology,superfamily_SSF52540"	-	no_errors
GPATCH4	54865	broad.mit.edu	36	1	154835451	154835451	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154835451	154835451	G	A	SNP	GPATCH4	NM_182679	human	genbank	54_36p	-1	validated	silent	c.12	p.T4	0.28	NULL	"HMMSmart_SM00443,HMMPfam_G-patch"	-	no_errors
BCAN	63827	broad.mit.edu	36	1	154883437	154883437	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154883437	154883437	C	G	SNP	BCAN	NM_021948	human	genbank	54_36p	1	validated	nonsense	c.312	p.Y104*	0.96	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406"	###############################################################################################################################################################################################################################################################	-	no_errors
BCAN	63827	broad.mit.edu	36	1	154888064	154888064	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	154888064	154888064	C	G	SNP	BCAN	NM_021948	human	genbank	54_36p	1	validated	missense	c.1256	p.S419C	0.08	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
BCAN	63827	broad.mit.edu	36	1	154895500	154895500	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	154895500	154895500	C	A	SNP	BCAN	NM_021948	human	genbank	54_36p	1	validated	missense	c.2686	p.R896S	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NES	10763	broad.mit.edu	36	1	154906731	154906731	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154906731	154906731	G	A	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	silent	c.3873	p.L1291	0.05	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
NES	10763	broad.mit.edu	36	1	154907888	154907888	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	154907888	154907888	G	C	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.2716	p.P906A	0	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
NES	10763	broad.mit.edu	36	1	154911706	154911706	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154911706	154911706	G	T	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	silent	c.834	p.I278	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
ISG20L2	81875	broad.mit.edu	36	1	154959853	154959853	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	154959853	154959853	A	G	SNP	ISG20L2	NM_030980	human	genbank	54_36p	-1	provisional	missense	c.974	p.V325A	1	"superfamily_RNaseH_fold,HMMSmart_EXOIII,HMMPfam_Exonuc_X-T"	"superfamily_RNaseH_fold,HMMSmart_EXOIII,HMMPfam_Exonuc_X-T"	-	no_errors
INSRR	3645	broad.mit.edu	36	1	155082117	155082117	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155082117	155082117	C	T	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.2092	p.V698I	0.51	"superfamily_FN_III-like,HMMSmart_FN3"	###############################################################################################################################################################################################################################################################	-	no_errors
INSRR	3645	broad.mit.edu	36	1	155085753	155085753	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	155085753	155085753	T	C	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	silent	c.1353	p.E451	0.99	"HMMPfam_Recep_L_domain,superfamily_SSF52058"	###############################################################################################################################################################################################################################################################	-	no_errors
INSRR	3645	broad.mit.edu	36	1	155088088	155088088	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	155088088	155088088	C	T	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.1058	p.S353N	1	"HMMPfam_Recep_L_domain,superfamily_SSF52058"	###############################################################################################################################################################################################################################################################	-	no_errors
INSRR	3645	broad.mit.edu	36	1	155090215	155090215	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155090215	155090215	C	A	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.590	p.S197I	0.97	"HMMPfam_Furin-like,superfamily_Grow_fac_recept"	###############################################################################################################################################################################################################################################################	-	no_errors
INSRR	3645	broad.mit.edu	36	1	155090390	155090390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	155090390	155090390	C	G	SNP	INSRR	NM_014215	human	genbank	54_36p	-1	validated	missense	c.415	p.V139L	1	"HMMPfam_Recep_L_domain,superfamily_SSF52058"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	broad.mit.edu	36	1	155108112	155108112	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	155108112	155108112	C	T	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	missense	c.791	p.T264M	0.78	superfamily_Immunoglobulin	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	broad.mit.edu	36	1	155112605	155112605	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	155112605	155112605	C	A	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	missense	c.1611	p.D537E	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	broad.mit.edu	36	1	155112836	155112836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155112836	155112836	G	A	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	silent	c.1653	p.E551	0.99	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK1	4914	broad.mit.edu	36	1	155115677	155115677	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	155115677	155115677	C	T	SNP	NTRK1	NM_002529	human	genbank	54_36p	1	reviewed	missense	c.1945	p.R649W	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
PEAR1	375033	broad.mit.edu	36	1	155141269	155141269	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155141269	155141269	G	A	SNP	PEAR1	NM_001080471	human	genbank	54_36p	1	provisional	splice_site	c.206+1	e2+1	1	-	-	-	no_errors
PEAR1	375033	broad.mit.edu	36	1	155143274	155143274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	155143274	155143274	C	T	SNP	PEAR1	NM_001080471	human	genbank	54_36p	1	provisional	missense	c.622	p.P208S	0.97	"HMMPfam_Laminin_EGF,PatternScan_EGF_1"	"HMMPfam_EMI,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_Grow_fac_recept"	-	no_errors
PEAR1	375033	broad.mit.edu	36	1	155149369	155149369	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155149369	155149369	G	A	SNP	PEAR1	NM_001080471	human	genbank	54_36p	1	provisional	missense	c.2393	p.R798H	0.33	superfamily_Grow_fac_recept	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,HMMSmart_EGF,superfamily_Grow_fac_recept,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2"	-	no_errors
ARHGEF11	9826	broad.mit.edu	36	1	155177816	155177816	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155177816	155177816	A	T	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	silent	c.3486	p.G1162	0	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,HMMSmart_RGS,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
ARHGEF11	9826	broad.mit.edu	36	1	155184735	155184735	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	155184735	155184735	C	G	SNP	ARHGEF11	NM_198236	human	genbank	54_36p	-1	reviewed	missense	c.2105	p.R702T	1	NULL	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729"	-	no_errors
ETV3L	440695	broad.mit.edu	36	1	155335910	155335910	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155335910	155335910	G	C	SNP	ETV3L	NM_001004341	human	genbank	54_36p	-1	provisional	missense	c.30	p.I10M	0.01	NULL	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
FCRL5	83416	broad.mit.edu	36	1	155757585	155757585	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	155757585	155757585	A	G	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	silent	c.2361	p.F787	0.34	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
FCRL5	83416	broad.mit.edu	36	1	155775561	155775561	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	155775561	155775561	G	A	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	silent	c.1341	p.Y447	0.85	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FCRL5	83416	broad.mit.edu	36	1	155783467	155783467	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	155783467	155783467	A	C	SNP	FCRL5	NM_031281	human	genbank	54_36p	-1	validated	missense	c.197	p.I66R	0	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FCRL2	79368	broad.mit.edu	36	1	155985361	155985361	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	155985361	155985361	G	A	SNP	FCRL2	NM_138738	human	genbank	54_36p	-1	validated	missense	c.562	p.P188S	0	NULL	superfamily_Immunoglobulin	-	no_errors
FCRL1	115350	broad.mit.edu	36	1	156038814	156038814	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	156038814	156038814	C	A	SNP	FCRL1	NM_052938	human	genbank	54_36p	-1	provisional	missense	c.584	p.G195V	0.02	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
CD5L	922	broad.mit.edu	36	1	156069752	156069752	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156069752	156069752	C	A	SNP	CD5L	NM_005894	human	genbank	54_36p	-1	validated	missense	c.893	p.R298L	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CD1D	912	broad.mit.edu	36	1	156419305	156419305	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156419305	156419305	C	T	SNP	CD1D	NM_001766	human	genbank	54_36p	1	reviewed	silent	c.621	p.A207	0.96	superfamily_SSF48726	"HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1"	-	no_errors
CD1C	911	broad.mit.edu	36	1	156526512	156526512	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156526512	156526512	C	T	SNP	CD1C	NM_001765	human	genbank	54_36p	1	reviewed	missense	c.34	p.L12F	0	NULL	"superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1"	-	no_errors
CD1B	910	broad.mit.edu	36	1	156565384	156565384	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156565384	156565384	G	A	SNP	CD1B	NM_001764	human	genbank	54_36p	-1	reviewed	missense	c.931	p.P311S	0	NULL	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	-	no_errors
OR10T2	128360	broad.mit.edu	36	1	156635631	156635631	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156635631	156635631	C	T	SNP	OR10T2	NM_001004475	human	genbank	54_36p	-1	provisional	missense	c.250	p.V84I	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10T2	128360	broad.mit.edu	36	1	156635826	156635826	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156635826	156635826	A	G	SNP	OR10T2	NM_001004475	human	genbank	54_36p	-1	provisional	missense	c.55	p.S19P	1	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR6Y1	391112	broad.mit.edu	36	1	156783880	156783880	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156783880	156783880	T	G	SNP	OR6Y1	NM_001005189	human	genbank	54_36p	-1	provisional	missense	c.640	p.I214L	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10X1	128367	broad.mit.edu	36	1	156816160	156816161	+	Nonsense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	156816160	156816161	GG	TT	DNP	OR10X1	NM_001004477	human	genbank	54_36p	-1	provisional	nonsense	c.154_153	p.YLL51*	0.028:0.068	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SPTA1	6708	broad.mit.edu	36	1	156879836	156879836	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	156879836	156879836	C	A	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.4342	p.G1448W	1	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen"	-	no_errors
SPTA1	6708	broad.mit.edu	36	1	156917982	156917982	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	156917982	156917982	C	G	SNP	SPTA1	NM_003126	human	genbank	54_36p	-1	reviewed	missense	c.490	p.V164L	0.99	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
AIM2	9447	broad.mit.edu	36	1	157302731	157302731	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	157302731	157302731	G	T	SNP	AIM2	NM_004833	human	genbank	54_36p	-1	reviewed	missense	c.409	p.Q137K	0.02	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_HIN"	-	no_errors
AIM2	9447	broad.mit.edu	36	1	157309709	157309709	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	1	157309709	157309709	A	T	SNP	AIM2	NM_004833	human	genbank	54_36p	-1	reviewed	missense	c.205	p.F69I	0	"HMMPfam_PAAD_DAPIN,superfamily_DEATH_like"	"HMMPfam_PAAD_DAPIN,HMMPfam_HIN,superfamily_DEATH_like"	-	no_errors
OR10J3	441911	broad.mit.edu	36	1	157550844	157550844	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	157550844	157550844	G	T	SNP	OR10J3	NM_001004467	human	genbank	54_36p	-1	provisional	missense	c.230	p.A77D	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10J3	441911	broad.mit.edu	36	1	157551009	157551009	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	157551009	157551009	C	T	SNP	OR10J3	NM_001004467	human	genbank	54_36p	-1	provisional	missense	c.65	p.R22Q	0.49	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR10J1	26476	broad.mit.edu	36	1	157676530	157676530	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	157676530	157676530	A	T	SNP	OR10J1	NM_012351	human	genbank	54_36p	1	provisional	missense	c.358	p.I120F	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10J5	127385	broad.mit.edu	36	1	157772058	157772058	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	157772058	157772058	G	A	SNP	OR10J5	NM_001004469	human	genbank	54_36p	-1	provisional	missense	c.364	p.R122C	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
APCS	325	broad.mit.edu	36	1	157824849	157824849	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	157824849	157824849	G	A	SNP	APCS	NM_001639	human	genbank	54_36p	1	reviewed	silent	c.399	p.L133	0.1	"HMMSmart_PTX,superfamily_ConA_like_lec_gl,HMMPfam_Pentaxin"	"HMMSmart_PTX,superfamily_ConA_like_lec_gl,HMMPfam_Pentaxin,PatternScan_PENTAXIN"	-	no_errors
CCDC19	25790	broad.mit.edu	36	1	158124868	158124868	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	158124868	158124868	G	C	SNP	CCDC19	NM_012337	human	genbank	54_36p	-1	validated	missense	c.315	p.S105R	1	NULL	NULL	-	no_errors
IGSF9	57549	broad.mit.edu	36	1	158170866	158170877	+	In_Frame_Del	DEL	AGGGTGGATGCA	-	AGGGTGGATGCA	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	AGGGTGGATGCA	AGGGTGGATGCA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	158170866	158170877	AGGGTGGATGCA	-	DEL	IGSF9	NM_020789	human	genbank	54_36p	-1	validated	in_frame_del	c.934_923	p.LHPPS308in_frame_delP	0.989:0.990:1.000:0.998:0.333:0.399:0.293:0.004:0.003:0.008:0.004:0.005	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408"	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	"(deletion:cds_exon[158170839,158170984])"	no_errors
ATP1A4	480	broad.mit.edu	36	1	158395466	158395466	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	158395466	158395466	G	A	SNP	ATP1A4	NM_144699	human	genbank	54_36p	1	reviewed	silent	c.576	p.E192	0.05	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP1A4	480	broad.mit.edu	36	1	158411008	158411008	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	158411008	158411008	G	A	SNP	ATP1A4	NM_144699	human	genbank	54_36p	1	reviewed	missense	c.2158	p.V720M	1	"HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M"	###############################################################################################################################################################################################################################################################	-	no_errors
CASQ1	844	broad.mit.edu	36	1	158431493	158431493	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	158431493	158431493	A	G	SNP	CASQ1	NM_001231	human	genbank	54_36p	1	reviewed	missense	c.515	p.D172G	1	"HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd"	"HMMPfam_Calsequestrin,PatternScan_CALSEQUESTRIN_1,superfamily_Thiordxn-like_fd,PatternScan_CALSEQUESTRIN_2"	-	no_errors
COPA	1314	broad.mit.edu	36	1	158535565	158535565	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	158535565	158535565	G	A	SNP	COPA	NM_001098398	human	genbank	54_36p	-1	reviewed	missense	c.1808	p.P603L	1	HMMPfam_Coatomer_WDAD	"HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_Coatomer_WDAD,HMMPfam_COPI_C,superfamily_Calret_calnex_P"	-	no_errors
NHLH1	4807	broad.mit.edu	36	1	158607168	158607168	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	158607168	158607168	T	C	SNP	NHLH1	NM_005598	human	genbank	54_36p	1	validated	missense	c.23	p.M8T	0.98	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
CD84	8832	broad.mit.edu	36	1	158801896	158801896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	158801896	158801896	C	T	SNP	CD84	NM_003874	human	genbank	54_36p	-1	provisional	missense	c.310	p.A104T	0.01	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
CD84	8832	broad.mit.edu	36	1	158801956	158801956	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	158801956	158801956	G	A	SNP	CD84	NM_003874	human	genbank	54_36p	-1	provisional	missense	c.250	p.R84W	0.01	"HMMSmart_SM00409,superfamily_Immunoglobulin"	"HMMSmart_SM00409,superfamily_Immunoglobulin"	-	no_errors
CD48	962	broad.mit.edu	36	1	158948106	158948106	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	158948106	158948106	G	A	SNP	CD48	NM_001778	human	genbank	54_36p	-1	provisional	silent	c.72	p.T24	0.11	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
LY9	4063	broad.mit.edu	36	1	159050292	159050292	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159050292	159050292	T	A	SNP	LY9	NM_002348	human	genbank	54_36p	1	validated	missense	c.697	p.S233T	0.01	NULL	"HMMSmart_SM00409,superfamily_Immunoglobulin,PatternScan_AA_TRNA_LIGASE_I"	-	no_errors
CD244	51744	broad.mit.edu	36	1	159074894	159074894	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159074894	159074894	C	T	SNP	CD244	NM_016382	human	genbank	54_36p	-1	validated	missense	c.805	p.V269I	0.37	NULL	superfamily_Immunoglobulin	-	no_errors
F11R	50848	broad.mit.edu	36	1	159257448	159257448	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159257448	159257448	G	A	SNP	F11R	NM_016946	human	genbank	54_36p	-1	reviewed	missense	c.40	p.L14F	0.01	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
USF1	7391	broad.mit.edu	36	1	159278103	159278103	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159278103	159278103	G	A	SNP	USF1	NM_007122	human	genbank	54_36p	-1	reviewed	missense	c.434	p.S145L	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
ARHGAP30	257106	broad.mit.edu	36	1	159289206	159289206	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	159289206	159289206	C	T	SNP	ARHGAP30	NM_001025598	human	genbank	54_36p	-1	validated	missense	c.670	p.E224K	0.98	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP30	257106	broad.mit.edu	36	1	159290802	159290802	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	159290802	159290802	C	A	SNP	ARHGAP30	NM_001025598	human	genbank	54_36p	-1	validated	missense	c.514	p.V172L	1	"HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP"	"HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP"	-	no_errors
PVRL4	81607	broad.mit.edu	36	1	159314045	159314045	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159314045	159314045	G	T	SNP	PVRL4	NM_030916	human	genbank	54_36p	-1	validated	missense	c.552	p.D184E	1	"superfamily_SSF48726,HMMPfam_C2-set_2"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C2-set_2,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
USP21	27005	broad.mit.edu	36	1	159397442	159397442	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	159397442	159397442	C	T	SNP	USP21	NM_001014443	human	genbank	54_36p	1	reviewed	missense	c.388	p.R130C	0.96	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
PPOX	5498	broad.mit.edu	36	1	159407584	159407584	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159407584	159407584	C	T	SNP	PPOX	NM_000309	human	genbank	54_36p	1	reviewed	silent	c.1428	p.N476	0.58	NULL	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase"	-	no_errors
ADAMTS4	9507	broad.mit.edu	36	1	159430439	159430439	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159430439	159430439	G	C	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	missense	c.1458	p.H486Q	1	HMMSmart_SM00608	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
MPZ	4359	broad.mit.edu	36	1	159542864	159542864	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159542864	159542864	C	T	SNP	MPZ	NM_000530	human	genbank	54_36p	-1	reviewed	missense	c.493	p.G165R	1	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_Myelin-PO_N,PatternScan_MYELIN_P0"	-	no_errors
FCGR2A	2212	broad.mit.edu	36	1	159747303	159747303	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159747303	159747303	G	A	SNP	FCGR2A	NM_021642	human	genbank	54_36p	1	reviewed	silent	c.672	p.A224	0	NULL	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
FCGR3A	2214	broad.mit.edu	36	1	159781170	159781170	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	159781170	159781170	C	T	SNP	FCGR3A	NM_000569	human	genbank	54_36p	-1	reviewed	silent	c.630	p.G210	0.01	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	-	no_errors
OLFML2B	25903	broad.mit.edu	36	1	160236674	160236675	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	160236674	160236675	CC	AA	DNP	OLFML2B	NM_015441	human	genbank	54_36p	-1	provisional	missense	c.802_801	p.A268S	0.015:0.042	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
C1orf111	284680	broad.mit.edu	36	1	160610926	160610926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	160610926	160610926	C	T	SNP	C1orf111	NM_182581	human	genbank	54_36p	-1	validated	missense	c.322	p.E108K	0.53	NULL	NULL	-	no_errors
UAP1	6675	broad.mit.edu	36	1	160813371	160813371	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	160813371	160813371	A	G	SNP	UAP1	NM_003115	human	genbank	54_36p	1	validated	missense	c.461	p.Y154C	0.96	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_UDPGP"	-	no_errors
HSD17B7	51478	broad.mit.edu	36	1	161039937	161039937	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	161039937	161039937	G	A	SNP	HSD17B7	NM_016371	human	genbank	54_36p	1	validated	silent	c.735	p.P245	0	superfamily_NAD(P)-binding Rossmann-fold domains	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	-	no_errors
RGS4	5999	broad.mit.edu	36	1	161310852	161310852	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	161310852	161310852	C	T	SNP	RGS4	NM_001102445	human	genbank	54_36p	1	reviewed	missense	c.787	p.R263C	1	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
LRRC52	440699	broad.mit.edu	36	1	163780187	163780187	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	163780187	163780187	G	T	SNP	LRRC52	NM_001005214	human	genbank	54_36p	1	validated	silent	c.30	p.G10	0.01	NULL	"HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
POGK	57645	broad.mit.edu	36	1	165085973	165085973	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	165085973	165085973	C	A	SNP	POGK	NM_017542	human	genbank	54_36p	1	reviewed	nonsense	c.1533	p.Y511*	0.59	HMMPfam_DDE	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMPfam_BrkDBD,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00674,HMMPfam_DDE"	-	no_errors
DUSP27	92235	broad.mit.edu	36	1	165362394	165362394	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	165362394	165362394	G	A	SNP	DUSP27	NM_001080426	human	genbank	54_36p	1	provisional	missense	c.1402	p.A468T	0.43	NULL	"PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	-	no_errors
DUSP27	92235	broad.mit.edu	36	1	165363449	165363449	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	165363449	165363449	C	A	SNP	DUSP27	NM_001080426	human	genbank	54_36p	1	provisional	silent	c.2457	p.T819	1	NULL	"HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_DSPc,superfamily_SSF52799"	-	no_errors
POU2F1	5451	broad.mit.edu	36	1	165610021	165610021	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	165610021	165610021	A	T	SNP	POU2F1	NM_002697	human	genbank	54_36p	1	provisional	missense	c.386	p.Q129L	1	NULL	"HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
RCSD1	92241	broad.mit.edu	36	1	165933274	165933274	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	165933274	165933274	G	T	SNP	RCSD1	NM_052862	human	genbank	54_36p	1	validated	missense	c.789	p.K263N	0	HMMPfam_RCSD	HMMPfam_RCSD	-	no_errors
ADCY10	55811	broad.mit.edu	36	1	166114492	166114492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	166114492	166114492	C	A	SNP	ADCY10	NM_018417	human	genbank	54_36p	-1	validated	missense	c.1222	p.G408C	1	"superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc"	"superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,superfamily_TPR-like"	-	no_errors
GPR161	23432	broad.mit.edu	36	1	166340600	166340600	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	166340600	166340600	G	C	SNP	GPR161	NM_153832	human	genbank	54_36p	-1	provisional	missense	c.113	p.T38S	0.99	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
XCL2	6846	broad.mit.edu	36	1	166777941	166777941	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	166777941	166777941	C	G	SNP	XCL2	NM_003175	human	genbank	54_36p	-1	validated	missense	c.90	p.R30S	0.01	"superfamily_Chemokine_IL8,HMMPfam_IL8,HMMSmart_SCY"	"superfamily_Chemokine_IL8,HMMPfam_IL8,HMMSmart_SCY"	-	no_errors
DPT	1805	broad.mit.edu	36	1	166950153	166950153	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	166950153	166950153	C	G	SNP	DPT	NM_001937	human	genbank	54_36p	-1	reviewed	missense	c.361	p.E121Q	1	NULL	NULL	-	no_errors
ATP1B1	481	broad.mit.edu	36	1	167347334	167347334	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	167347334	167347334	C	T	SNP	ATP1B1	NM_001677	human	genbank	54_36p	1	reviewed	missense	c.200	p.T67I	1	HMMPfam_Na_K-ATPase	"HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2"	-	no_errors
F5	2153	broad.mit.edu	36	1	167785707	167785707	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	167785707	167785707	G	T	SNP	F5	NM_000130	human	genbank	54_36p	-1	reviewed	missense	c.1567	p.L523I	1	superfamily_Cupredoxins	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_LSPR,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
SELP	6403	broad.mit.edu	36	1	167829531	167829531	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	167829531	167829531	A	G	SNP	SELP	NM_003005	human	genbank	54_36p	-1	reviewed	silent	c.2343	p.S781	0.15	NULL	"HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
SELP	6403	broad.mit.edu	36	1	167832958	167832958	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	167832958	167832958	A	T	SNP	SELP	NM_003005	human	genbank	54_36p	-1	reviewed	missense	c.1786	p.S596T	0.95	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin"	-	no_errors
SELE	6401	broad.mit.edu	36	1	167963218	167963218	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	167963218	167963218	G	C	SNP	SELE	NM_000450	human	genbank	54_36p	-1	reviewed	missense	c.1541	p.T514S	0.19	"HMMSmart_SM00181,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	###############################################################################################################################################################################################################################################################	-	no_errors
SELE	6401	broad.mit.edu	36	1	167968549	167968549	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	167968549	167968549	T	A	SNP	SELE	NM_000450	human	genbank	54_36p	-1	reviewed	silent	c.252	p.V84	1	"HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
C1orf112	55732	broad.mit.edu	36	1	168083561	168083561	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	168083561	168083561	C	G	SNP	C1orf112	NM_018186	human	genbank	54_36p	1	predicted	missense	c.2051	p.A684G	0.97	NULL	NULL	-	no_errors
SCYL3	57147	broad.mit.edu	36	1	168090508	168090508	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	168090508	168090508	C	T	SNP	SCYL3	NM_181093	human	genbank	54_36p	-1	validated	missense	c.1696	p.E566K	0	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
SCYL3	57147	broad.mit.edu	36	1	168091670	168091670	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	168091670	168091670	C	G	SNP	SCYL3	NM_181093	human	genbank	54_36p	-1	validated	missense	c.1365	p.L455F	0.61	NULL	"HMMPfam_HEAT,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat"	-	no_errors
MYOC	4653	broad.mit.edu	36	1	169872085	169872085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	169872085	169872085	C	A	SNP	MYOC	NM_000261	human	genbank	54_36p	-1	reviewed	missense	c.1118	p.W373L	1	"HMMPfam_OLF,HMMSmart_SM00284"	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
C1orf9	51430	broad.mit.edu	36	1	170787366	170787366	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	170787366	170787366	G	A	SNP	C1orf9	NM_016227	human	genbank	54_36p	1	validated	missense	c.739	p.E247K	1	NULL	"superfamily_Gal_bind_like,HMMPfam_Sad1_UNC"	-	no_errors
C1orf9	51430	broad.mit.edu	36	1	170845647	170845647	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	170845647	170845647	A	G	SNP	C1orf9	NM_016227	human	genbank	54_36p	1	validated	missense	c.3843	p.I1281M	0.56	NULL	"superfamily_Gal_bind_like,HMMPfam_Sad1_UNC"	-	no_errors
DARS2	55157	broad.mit.edu	36	1	172069149	172069149	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	172069149	172069149	C	G	SNP	DARS2	NM_018122	human	genbank	54_36p	1	validated	missense	c.505	p.L169V	0.99	"superfamily_SSF55681,HMMPfam_tRNA-synt_2"	"superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,superfamily_SSF55681,HMMPfam_tRNA-synt_2,superfamily_SSF55261,HMMPfam_GAD"	-	no_errors
ZBTB37	84614	broad.mit.edu	36	1	172106240	172106240	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	172106240	172106240	C	A	SNP	ZBTB37	NM_032522	human	genbank	54_36p	1	provisional	missense	c.254	p.S85Y	0.99	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	-	no_errors
RC3H1	149041	broad.mit.edu	36	1	172228718	172228718	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	172228718	172228718	T	A	SNP	RC3H1	NM_172071	human	genbank	54_36p	-1	validated	missense	c.29	p.D10V	1	superfamily_RING/U-box	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH"	-	no_errors
RABGAP1L	9910	broad.mit.edu	36	1	172456750	172456750	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	172456750	172456750	T	G	SNP	RABGAP1L	NM_014857	human	genbank	54_36p	1	validated	missense	c.156	p.D52E	1	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
RABGAP1L	9910	broad.mit.edu	36	1	173193654	173193654	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	173193654	173193654	G	C	SNP	RABGAP1L	NM_014857	human	genbank	54_36p	1	validated	missense	c.2437	p.V813L	1	NULL	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	-	no_errors
TNN	63923	broad.mit.edu	36	1	173315944	173315944	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	173315944	173315944	G	C	SNP	TNN	NM_022093	human	genbank	54_36p	1	validated	missense	c.807	p.Q269H	1	"HMMPfam_fn3,HMMSmart_SM00060"	###############################################################################################################################################################################################################################################################	-	no_errors
TNN	63923	broad.mit.edu	36	1	173321172	173321173	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	173321172	173321173	CC	AG	DNP	TNN	NM_022093	human	genbank	54_36p	1	validated	missense	c.1243_1244	p.P415R	0.977:0.974	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
TNN	63923	broad.mit.edu	36	1	173329814	173329814	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	173329814	173329814	G	A	SNP	TNN	NM_022093	human	genbank	54_36p	1	validated	missense	c.1390	p.D464N	0.97	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
TNN	63923	broad.mit.edu	36	1	173333294	173333294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	173333294	173333294	C	T	SNP	TNN	NM_022093	human	genbank	54_36p	1	validated	silent	c.1707	p.D569	0.96	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
TNN	63923	broad.mit.edu	36	1	173363881	173363881	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	173363881	173363881	G	A	SNP	TNN	NM_022093	human	genbank	54_36p	1	validated	missense	c.3136	p.G1046S	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
TNR	7143	broad.mit.edu	36	1	173642136	173642136	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	173642136	173642136	G	C	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	missense	c.338	p.T113S	1	NULL	"PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like"	-	no_errors
TNR	7143	broad.mit.edu	36	1	173642441	173642441	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	173642441	173642441	C	A	SNP	TNR	NM_003285	human	genbank	54_36p	-1	validated	missense	c.33	p.K11N	0.96	NULL	"HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00181,superfamily_Fibronectin type III,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin"	-	no_errors
PAPPA2	60676	broad.mit.edu	36	1	174931550	174931550	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	174931550	174931550	A	G	SNP	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	missense	c.2678	p.Y893C	1	HMMPfam_Peptidase_M43	###############################################################################################################################################################################################################################################################	-	no_errors
PAPPA2	60676	broad.mit.edu	36	1	175027208	175027217	+	Frame_Shift_Del	DEL	GTGGAGTACA	-	GTGGAGTACA	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	GTGGAGTACA	GTGGAGTACA	-	-	GTGGAGTACA	GTGGAGTACA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	175027208	175027217	GTGGAGTACA	-	DEL	PAPPA2	NM_020318	human	genbank	54_36p	1	validated	frame_shift_del	c.4987_4996	p.V1663fs	0.559:0.959:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[175027106,175027241])"	no_errors
ASTN1	460	broad.mit.edu	36	1	175266704	175266704	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	175266704	175266704	G	T	SNP	ASTN1	NM_004319	human	genbank	54_36p	-1	validated	missense	c.873	p.D291E	1	NULL	"HMMSmart_EGF,HMMSmart_MACPF,superfamily_FN_III-like,HMMSmart_FN3"	-	no_errors
SEC16B	89866	broad.mit.edu	36	1	176168489	176168489	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	176168489	176168489	G	C	SNP	SEC16B	NM_033127	human	genbank	54_36p	-1	validated	missense	c.2899	p.L967V	0.23	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
SEC16B	89866	broad.mit.edu	36	1	176183693	176183693	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	176183693	176183693	C	G	SNP	SEC16B	NM_033127	human	genbank	54_36p	-1	validated	missense	c.1553	p.G518A	1	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
SEC16B	89866	broad.mit.edu	36	1	176194718	176194728	+	Frame_Shift_Del	DEL	CTTATGTACAT	-	CTTATGTACAT	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	CTTATGTACAT	CTTATGTACAT	-	-	CTTATGTACAT	CTTATGTACAT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	176194718	176194728	CTTATGTACAT	-	DEL	SEC16B	NM_033127	human	genbank	54_36p	-1	validated	frame_shift_del	c.1014_1004	p.D335fs	0.994:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.994:0.994:1.000	NULL	PatternScan_PHOSPHOPANTETHEINE	"(deletion:cds_exon[176194598,176194733])"	no_errors
RASAL2	9462	broad.mit.edu	36	1	176535831	176535831	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	176535831	176535831	G	T	SNP	RASAL2	NM_170692	human	genbank	54_36p	1	reviewed	nonsense	c.358	p.E120*	1	"HMMSmart_PH,superfamily_SSF50729"	"HMMSmart_PH,superfamily_SSF50729,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1"	-	no_errors
FAM20B	9917	broad.mit.edu	36	1	177279714	177279714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	177279714	177279714	G	A	SNP	FAM20B	NM_014864	human	genbank	54_36p	1	validated	missense	c.109	p.D37N	1	NULL	HMMPfam_DUF1193	-	no_errors
ABL2	27	broad.mit.edu	36	1	177362146	177362146	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	177362146	177362146	C	T	SNP	ABL2	NM_007314	human	genbank	54_36p	-1	reviewed	missense	c.676	p.A226T	0.95	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	###############################################################################################################################################################################################################################################################	-	no_errors
ABL2	27	broad.mit.edu	36	1	177369080	177369080	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	177369080	177369080	G	A	SNP	ABL2	NM_007314	human	genbank	54_36p	-1	reviewed	silent	c.210	p.G70	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
C1orf125	126859	broad.mit.edu	36	1	177614484	177614484	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	177614484	177614484	A	T	SNP	C1orf125	NM_144696	human	genbank	54_36p	1	validated	missense	c.464	p.Q155L	0.01	NULL	HMMPfam_Ax_dynein_light	-	no_errors
TDRD5	163589	broad.mit.edu	36	1	177875804	177875804	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	177875804	177875804	C	T	SNP	TDRD5	NM_173533	human	genbank	54_36p	1	provisional	silent	c.1728	p.F576	1	"HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333"	"HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333"	-	no_errors
TDRD5	163589	broad.mit.edu	36	1	177926529	177926529	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	177926529	177926529	G	A	SNP	TDRD5	NM_173533	human	genbank	54_36p	1	provisional	missense	c.2774	p.R925H	0.01	NULL	"HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT"	-	no_errors
TOR1AIP2	163590	broad.mit.edu	36	1	178086742	178086742	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	178086742	178086742	G	C	SNP	TOR1AIP2	NM_145034	human	genbank	54_36p	-1	provisional	silent	c.414	p.A138	0	HMMPfam_LAP1C	HMMPfam_LAP1C	-	no_errors
TOR1AIP1	26092	broad.mit.edu	36	1	178153662	178153662	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	178153662	178153662	C	A	SNP	TOR1AIP1	NM_015602	human	genbank	54_36p	1	validated	missense	c.1417	p.Q473K	0.99	HMMPfam_LAP1C	HMMPfam_LAP1C	-	no_errors
CEP350	9857	broad.mit.edu	36	1	178346811	178346811	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	178346811	178346811	G	A	SNP	CEP350	NM_014810	human	genbank	54_36p	1	reviewed	silent	c.9243	p.L3081	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
LHX4	89884	broad.mit.edu	36	1	178507763	178507763	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	178507763	178507763	A	T	SNP	LHX4	NM_033343	human	genbank	54_36p	1	reviewed	silent	c.777	p.R259	1	NULL	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ACBD6	84320	broad.mit.edu	36	1	178524220	178524220	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	178524220	178524220	G	A	SNP	ACBD6	NM_032360	human	genbank	54_36p	-1	provisional	silent	c.750	p.D250	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"PatternScan_ACB_1,HMMPfam_ACBP,superfamily_ACBP,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
KIAA1614	57710	broad.mit.edu	36	1	179153627	179153627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	179153627	179153627	G	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	1	validated	missense	c.1015	p.V339L	0.02	NULL	NULL	-	no_errors
KIAA1614	57710	broad.mit.edu	36	1	179176913	179176913	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	179176913	179176913	T	A	SNP	KIAA1614	NM_020950	human	genbank	54_36p	1	validated	missense	c.3028	p.F1010I	0.98	NULL	NULL	-	no_errors
KIAA1614	57710	broad.mit.edu	36	1	179180170	179180170	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	179180170	179180170	G	T	SNP	KIAA1614	NM_020950	human	genbank	54_36p	1	validated	missense	c.3182	p.R1061L	0.99	NULL	NULL	-	no_errors
IER5	51278	broad.mit.edu	36	1	179324748	179324748	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	179324748	179324748	G	A	SNP	IER5	NM_016545	human	genbank	54_36p	1	validated	silent	c.87	p.K29	1	HMMPfam_IER	HMMPfam_IER	-	no_errors
CACNA1E	777	broad.mit.edu	36	1	179969302	179969302	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	179969302	179969302	G	A	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	missense	c.3055	p.V1019M	0	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1E	777	broad.mit.edu	36	1	179992811	179992811	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	179992811	179992811	G	C	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	missense	c.4255	p.V1419L	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1E	777	broad.mit.edu	36	1	180030659	180030659	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	180030659	180030659	T	C	SNP	CACNA1E	NM_000721	human	genbank	54_36p	1	reviewed	missense	c.5935	p.S1979P	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
ZNF648	127665	broad.mit.edu	36	1	180293674	180293674	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	180293674	180293674	T	C	SNP	ZNF648	NM_001009992	human	genbank	54_36p	-1	provisional	missense	c.95	p.N32S	0	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NPL	80896	broad.mit.edu	36	1	181054357	181054357	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	181054357	181054357	G	A	SNP	NPL	NM_030769	human	genbank	54_36p	1	provisional	silent	c.516	p.L172	1	"HMMPfam_DHDPS,superfamily_Aldolase"	"HMMPfam_DHDPS,superfamily_Aldolase"	-	no_errors
DHX9	1660	broad.mit.edu	36	1	181089175	181089189	+	Splice_Site	DEL	CGGTAAGGCCAGCAC	-	CGGTAAGGCCAGCAC	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	CGGTAAGGCCAGCAC	CGGTAAGGCCAGCAC	-	-	CGGTAAGGCCAGCAC	CGGTAAGGCCAGCAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	181089175	181089189	CGGTAAGGCCAGCAC	-	DEL	DHX9	NM_001357	human	genbank	54_36p	1	reviewed	splice_site_del	c.476_477	p.A159fs	1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[181089064,181089176], intron[181089177,181089787])"	no_errors
LAMC1	3915	broad.mit.edu	36	1	181378499	181378499	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	181378499	181378499	A	C	SNP	LAMC1	NM_002293	human	genbank	54_36p	1	reviewed	missense	c.4781	p.K1594T	1	NULL	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,HMMSmart_LamB,HMMPfam_Laminin_B,PatternScan_EGF_2"	-	no_errors
NCF2	4688	broad.mit.edu	36	1	181801516	181801516	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	181801516	181801516	C	T	SNP	NCF2	NM_000433	human	genbank	54_36p	-1	reviewed	missense	c.946	p.D316N	0.71	superfamily_SH3	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF54277,HMMPfam_PB1,HMMSmart_PB1"	-	no_errors
RGL1	23179	broad.mit.edu	36	1	182140664	182140664	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	182140664	182140664	A	C	SNP	RGL1	NM_015149	human	genbank	54_36p	1	validated	missense	c.1513	p.M505L	1	"superfamily_Ras GEF,HMMSmart_SM00147"	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314"	-	no_errors
EDEM3	80267	broad.mit.edu	36	1	182930071	182930071	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	182930071	182930071	C	T	SNP	EDEM3	NM_025191	human	genbank	54_36p	-1	validated	missense	c.2419	p.A807T	0.05	NULL	"superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,PatternScan_ER_TARGET"	-	no_errors
C1orf25	81627	broad.mit.edu	36	1	183379689	183379689	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	183379689	183379689	A	G	SNP	C1orf25	NM_030934	human	genbank	54_36p	-1	reviewed	missense	c.751	p.Y251H	1	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_TRM"	"HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_TRM"	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184100339	184100339	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184100339	184100339	C	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.454	p.L152I	1	superfamily_vWA-like	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184101573	184101573	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184101573	184101573	A	C	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.576	p.T192	1	superfamily_vWA-like	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184164386	184164386	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184164386	184164386	G	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.1516	p.G506C	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184223241	184223241	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	184223241	184223241	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.2990	p.P997L	0.97	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184274722	184274722	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184274722	184274722	C	G	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.5990	p.A1997G	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184301077	184301077	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184301077	184301077	G	A	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	missense	c.7598	p.R2533H	0.95	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184326562	184326562	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184326562	184326562	T	C	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	silent	c.9777	p.L3259	0.99	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
HMCN1	83872	broad.mit.edu	36	1	184350680	184350680	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184350680	184350680	C	T	SNP	HMCN1	NM_031935	human	genbank	54_36p	1	reviewed	nonsense	c.11383	p.R3795*	1	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
TPR	7175	broad.mit.edu	36	1	184579221	184579221	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	184579221	184579221	G	A	SNP	TPR	NM_003292	human	genbank	54_36p	-1	reviewed	nonsense	c.3610	p.R1204*	1	HMMPfam_TPR_MLP1_2	"superfamily_Prefoldin,HMMPfam_TPR_MLP1_2"	-	no_errors
FAM5C	339479	broad.mit.edu	36	1	188500691	188500691	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	188500691	188500691	G	A	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.545	p.A182V	1	HMMSmart_SM00457	"HMMPfam_MACPF,HMMSmart_SM00457"	-	no_errors
UCHL5	51377	broad.mit.edu	36	1	191285522	191285522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	191285522	191285522	C	G	SNP	UCHL5	NM_015984	human	genbank	54_36p	-1	validated	missense	c.223	p.D75H	1	"HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases"	"HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases"	-	no_errors
B3GALT2	8707	broad.mit.edu	36	1	191416309	191416309	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	191416309	191416309	C	A	SNP	B3GALT2	NM_003783	human	genbank	54_36p	-1	reviewed	missense	c.1007	p.R336L	1	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
B3GALT2	8707	broad.mit.edu	36	1	191416457	191416457	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	191416457	191416457	C	T	SNP	B3GALT2	NM_003783	human	genbank	54_36p	-1	reviewed	missense	c.859	p.A287T	1	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
KCNT2	343450	broad.mit.edu	36	1	194516679	194516679	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	194516679	194516679	A	C	SNP	KCNT2	NM_198503	human	genbank	54_36p	-1	validated	missense	c.2844	p.C948W	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a"	-	no_errors
CFH	3075	broad.mit.edu	36	1	194962575	194962575	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	194962575	194962575	C	A	SNP	CFH	NM_000186	human	genbank	54_36p	1	reviewed	silent	c.2118	p.S706	0.16	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CFHR3	10878	broad.mit.edu	36	1	195025979	195025979	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	195025979	195025979	A	T	SNP	CFHR3	NM_021023	human	genbank	54_36p	1	validated	silent	c.795	p.I265	0.01	superfamily_Complement_control_module	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
ASPM	259266	broad.mit.edu	36	1	195337700	195337700	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	195337700	195337700	A	G	SNP	ASPM	NM_018136	human	genbank	54_36p	-1	validated	missense	c.7304	p.I2435T	0	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
ASPM	259266	broad.mit.edu	36	1	195381893	195381893	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	195381893	195381893	C	A	SNP	ASPM	NM_018136	human	genbank	54_36p	-1	validated	splice_site	c.297+1	e1+1	0.68	-	-	-	no_errors
ZBTB41	360023	broad.mit.edu	36	1	195435724	195435724	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	195435724	195435724	A	C	SNP	ZBTB41	NM_194314	human	genbank	54_36p	-1	validated	missense	c.503	p.I168R	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
CRB1	23418	broad.mit.edu	36	1	195583110	195583110	+	Missense_Mutation	SNP	C	C	T	rs62636263	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	195583110	195583110	C	T	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.866	p.T289M	0	"HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF"	###############################################################################################################################################################################################################################################################	-	no_errors
CRB1	23418	broad.mit.edu	36	1	195657365	195657365	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	195657365	195657365	C	G	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.1784	p.A595G	0	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CRB1	23418	broad.mit.edu	36	1	195663207	195663207	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	195663207	195663207	A	G	SNP	CRB1	NM_201253	human	genbank	54_36p	1	reviewed	missense	c.2129	p.E710G	0.99	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
DENND1B	163486	broad.mit.edu	36	1	195747698	195747698	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	195747698	195747698	C	T	SNP	uc001gud.2	ENST00000294737	human	ensembl	54_36p	-1	known	splice_site	c.291-1	e5-1	1	-	-	-	no_errors
LHX9	56956	broad.mit.edu	36	1	196153671	196153671	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	196153671	196153671	G	T	SNP	LHX9	NM_020204	human	genbank	54_36p	1	reviewed	missense	c.95	p.G32V	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PTPRC	5788	broad.mit.edu	36	1	196964122	196964122	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	196964122	196964122	C	T	SNP	PTPRC	NM_002838	human	genbank	54_36p	1	reviewed	missense	c.1745	p.A582V	0.51	NULL	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
ZNF281	23528	broad.mit.edu	36	1	198643191	198643191	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	198643191	198643191	G	T	SNP	ZNF281	NM_012482	human	genbank	54_36p	-1	provisional	missense	c.2266	p.H756N	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
KIF14	9928	broad.mit.edu	36	1	198789432	198789432	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	198789432	198789432	G	A	SNP	KIF14	NM_014875	human	genbank	54_36p	-1	validated	missense	c.4654	p.P1552S	0	NULL	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA"	-	no_errors
DDX59	83479	broad.mit.edu	36	1	198886348	198886348	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	198886348	198886348	A	G	SNP	DDX59	NM_001031725	human	genbank	54_36p	-1	validated	missense	c.1142	p.I381T	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"HMMPfam_zf-HIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
CAMSAP1L1	23271	broad.mit.edu	36	1	198996695	198996695	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	198996695	198996695	G	T	SNP	CAMSAP1L1	NM_203459	human	genbank	54_36p	1	validated	missense	c.245	p.C82F	1	NULL	"superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781"	-	no_errors
CAMSAP1L1	23271	broad.mit.edu	36	1	199085868	199085868	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	199085868	199085868	C	A	SNP	CAMSAP1L1	NM_203459	human	genbank	54_36p	1	validated	silent	c.3348	p.S1116	1	NULL	"superfamily_PRC-barrel domain,HMMPfam_DUF1781,superfamily_Calponin-homology domain CH-domain"	-	no_errors
GPR25	2848	broad.mit.edu	36	1	199109766	199109766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	199109766	199109766	C	T	SNP	GPR25	NM_005298	human	genbank	54_36p	1	provisional	silent	c.978	p.T326	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
C1orf106	55765	broad.mit.edu	36	1	199143622	199143622	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	199143622	199143622	G	T	SNP	C1orf106	NM_018265	human	genbank	54_36p	1	validated	silent	c.813	p.G271	0.21	NULL	NULL	-	no_errors
KIF21B	23046	broad.mit.edu	36	1	199239430	199239430	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	199239430	199239430	C	G	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	missense	c.1119	p.K373N	1	HMMSmart_KISc	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CACNA1S	779	broad.mit.edu	36	1	199306144	199306144	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	199306144	199306144	C	T	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	missense	c.2239	p.E747K	1	NULL	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1S	779	broad.mit.edu	36	1	199313732	199313732	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	199313732	199313732	C	A	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	missense	c.1517	p.S506I	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324"	-	no_errors
CACNA1S	779	broad.mit.edu	36	1	199327779	199327779	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	199327779	199327779	T	G	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	missense	c.485	p.K162T	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324"	-	no_errors
CACNA1S	779	broad.mit.edu	36	1	199327795	199327795	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	199327795	199327795	C	T	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	missense	c.469	p.A157T	0.99	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324"	-	no_errors
IGFN1	91156	broad.mit.edu	36	1	199449280	199449280	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	199449280	199449280	G	A	SNP	IGFN1	NM_178275	human	genbank	54_36p	1	validated	missense	c.116	p.R39K	0	NULL	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2"	-	no_errors
IGFN1	91156	broad.mit.edu	36	1	199450000	199450000	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	199450000	199450000	G	T	SNP	IGFN1	NM_178275	human	genbank	54_36p	1	validated	missense	c.281	p.C94F	1	"HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726"	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726"	-	no_errors
PKP1	5317	broad.mit.edu	36	1	199553426	199553426	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	199553426	199553426	G	T	SNP	PKP1	NM_000299	human	genbank	54_36p	1	reviewed	missense	c.950	p.R317M	0.99	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
NAV1	89796	broad.mit.edu	36	1	200016216	200016219	+	Frame_Shift_Del	DEL	CAGA	-	CAGA	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	CAGA	CAGA	-	-	CAGA	CAGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	200016216	200016219	CAGA	-	DEL	NAV1	NM_020443	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1271_1274	p.D425fs	0.976:0.447:1.000:1.000	NULL	"PatternScan_PPASE,superfamily_SSF52540,HMMSmart_AAA"	"(deletion:cds_exon[200016172,200016310])"	no_errors
ELF3	1999	broad.mit.edu	36	1	200246975	200246975	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	200246975	200246975	C	T	SNP	ELF3	NM_004433	human	genbank	54_36p	1	validated	missense	c.88	p.P30S	0.01	superfamily_SAM/Pointed domain	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	-	no_errors
GPR37L1	9283	broad.mit.edu	36	1	200363835	200363843	+	In_Frame_Del	DEL	CAGTCACCT	-	CAGTCACCT	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	CAGTCACCT	CAGTCACCT	-	-	CAGTCACCT	CAGTCACCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	200363835	200363843	CAGTCACCT	-	DEL	GPR37L1	NM_004767	human	genbank	54_36p	1	validated	in_frame_del	c.974_982	p.TVTC325in_frame_delS	0.996:0.060:0.641:0.925:0.933:0.978:0.993:0.999:1.000	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"(deletion:cds_exon[200363492,200364307])"	no_errors
LGR6	59352	broad.mit.edu	36	1	200542619	200542619	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	200542619	200542619	C	T	SNP	LGR6	NM_001017403	human	genbank	54_36p	1	reviewed	silent	c.1137	p.I379	0.94	"superfamily_RNI-like,HMMSmart_SM00369"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_RNI-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00365,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
LGR6	59352	broad.mit.edu	36	1	200550592	200550592	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	200550592	200550592	A	G	SNP	LGR6	NM_001017403	human	genbank	54_36p	1	reviewed	missense	c.1607	p.D536G	1	NULL	"HMMPfam_7tm_1,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
PPP1R12B	4660	broad.mit.edu	36	1	200652587	200652587	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	200652587	200652587	G	C	SNP	PPP1R12B	NM_032105	human	genbank	54_36p	1	reviewed	missense	c.341	p.R114T	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
PPP1R12B	4660	broad.mit.edu	36	1	200673618	200673618	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	200673618	200673618	C	G	SNP	PPP1R12B	NM_032105	human	genbank	54_36p	1	reviewed	missense	c.1301	p.S434C	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
PPP1R12B	4660	broad.mit.edu	36	1	200731221	200731221	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	200731221	200731221	A	T	SNP	PPP1R12B	NM_032105	human	genbank	54_36p	1	reviewed	missense	c.2323	p.M775L	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
SYT2	127833	broad.mit.edu	36	1	200838172	200838172	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	200838172	200838172	C	T	SNP	SYT2	NM_177402	human	genbank	54_36p	-1	validated	missense	c.590	p.R197Q	0.97	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
KDM5B	10765	broad.mit.edu	36	1	200981711	200981711	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	200981711	200981711	G	T	SNP	JARID1B	NM_006618	human	genbank	54_36p	-1	validated	missense	c.2221	p.L741I	1	HMMPfam_zf-C5HC2	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1"	-	no_errors
RABIF	5877	broad.mit.edu	36	1	201124798	201124798	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	201124798	201124798	G	T	SNP	RABIF	NM_002871	human	genbank	54_36p	-1	provisional	silent	c.52	p.R18	0.97	"superfamily_Mss4-like,HMMPfam_Mss4"	"superfamily_Mss4-like,HMMPfam_Mss4"	-	no_errors
CYB5R1	51706	broad.mit.edu	36	1	201199452	201199452	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	201199452	201199452	G	A	SNP	CYB5R1	NM_016243	human	genbank	54_36p	-1	validated	missense	c.586	p.R196W	1	"superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1"	"superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1"	-	no_errors
CHI3L1	1116	broad.mit.edu	36	1	201416371	201416371	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	201416371	201416371	C	A	SNP	CHI3L1	NM_001276	human	genbank	54_36p	-1	validated	silent	c.744	p.G248	0.94	"HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat"	"PatternScan_CHITINASE_18,HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat,superfamily_SSF54556"	-	no_errors
CHIT1	1118	broad.mit.edu	36	1	201460810	201460810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	201460810	201460810	G	A	SNP	CHIT1	NM_003465	human	genbank	54_36p	-1	reviewed	silent	c.303	p.F101	1	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,PatternScan_CHITINASE_18,superfamily_Chitinase insertion domain,superfamily_Invertebrate chitin-binding proteins,HMMSmart_SM00494,HMMPfam_CBM_14"	-	no_errors
BTG2	7832	broad.mit.edu	36	1	201541360	201541360	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	201541360	201541360	G	A	SNP	BTG2	NM_006763	human	genbank	54_36p	1	reviewed	missense	c.3	p.M1I	0.9	NULL	"HMMSmart_btg1,HMMPfam_BTG,PatternScan_BTG_1,PatternScan_BTG_2"	-	no_errors
PRELP	5549	broad.mit.edu	36	1	201719438	201719438	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	201719438	201719438	C	T	SNP	PRELP	NM_002725	human	genbank	54_36p	1	reviewed	missense	c.503	p.A168V	0.02	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369"	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
PRELP	5549	broad.mit.edu	36	1	201719889	201719889	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	201719889	201719889	C	T	SNP	PRELP	NM_002725	human	genbank	54_36p	1	reviewed	silent	c.954	p.L318	1	"HMMPfam_LRR_1,superfamily_L domain-like"	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like"	-	no_errors
ATP2B4	493	broad.mit.edu	36	1	201975442	201975442	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	201975442	201975442	A	T	SNP	ATP2B4	NM_001684	human	genbank	54_36p	1	reviewed	missense	c.3455	p.E1152V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SOX13	9580	broad.mit.edu	36	1	202350167	202350167	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	202350167	202350167	C	G	SNP	SOX13	NM_005686	human	genbank	54_36p	1	reviewed	missense	c.315	p.N105K	0.98	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
KISS1	3814	broad.mit.edu	36	1	202428580	202428580	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	202428580	202428580	G	T	SNP	KISS1	NM_002256	human	genbank	54_36p	-1	validated	silent	c.48	p.T16	0.37	NULL	NULL	-	no_errors
PLEKHA6	22874	broad.mit.edu	36	1	202481417	202481417	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	202481417	202481417	C	T	SNP	PLEKHA6	NM_014935	human	genbank	54_36p	-1	validated	missense	c.1981	p.G661R	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
PLEKHA6	22874	broad.mit.edu	36	1	202503260	202503260	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	202503260	202503260	G	C	SNP	PLEKHA6	NM_014935	human	genbank	54_36p	-1	validated	missense	c.246	p.F82L	1	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
MDM4	4194	broad.mit.edu	36	1	202782580	202782580	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	202782580	202782580	G	A	SNP	MDM4	NM_002393	human	genbank	54_36p	1	validated	silent	c.855	p.E285	1	NULL	"superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,PatternScan_ZF_RANBP2_1,superfamily_RING/U-box"	-	no_errors
NFASC	23114	broad.mit.edu	36	1	203219849	203219849	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	203219849	203219849	C	T	SNP	NFASC	NM_015090	human	genbank	54_36p	1	validated	missense	c.2530	p.R844C	1	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
NUAK2	81788	broad.mit.edu	36	1	203539966	203539966	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	203539966	203539966	G	C	SNP	NUAK2	NM_030952	human	genbank	54_36p	-1	provisional	silent	c.1122	p.L374	0.96	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
KLHDC8A	55220	broad.mit.edu	36	1	203579005	203579005	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	203579005	203579005	G	C	SNP	KLHDC8A	NM_018203	human	genbank	54_36p	-1	provisional	silent	c.351	p.A117	1	"superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	"superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
SLC45A3	85414	broad.mit.edu	36	1	203898841	203898876	+	In_Frame_Del	DEL	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC	-	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	203898841	203898876	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC	-	DEL	SLC45A3	NM_033102	human	genbank	54_36p	-1	validated	in_frame_del	c.701_666	p.LGPTEPAEGLSA223in_frame_del	0.002:0.010:0.008:0.143:0.161:0.189:0.349:0.371:0.375:0.416:0.408:0.371:0.946:0.941:0.000:0.000:0.000:0.000:0.147:0.162:0.187:0.196:0.196:0.107:0.129:0.000:0.000:0.002:0.000:0.000:0.004:0.008:0.004:0.003:0.001:0.005	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"(deletion:cds_exon[203898584,203899369])"	no_errors
PM20D1	148811	broad.mit.edu	36	1	204081137	204081137	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	204081137	204081137	C	G	SNP	PM20D1	NM_152491	human	genbank	54_36p	-1	validated	missense	c.428	p.G143A	0.97	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M20"	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Bacterial exopeptidase dimerisation domain"	-	no_errors
SLC26A9	115019	broad.mit.edu	36	1	204171506	204171506	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	204171506	204171506	A	T	SNP	SLC26A9	NM_134325	human	genbank	54_36p	-1	reviewed	missense	c.66	p.D22E	0.92	NULL	"HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
AVPR1B	553	broad.mit.edu	36	1	204391551	204391551	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	204391551	204391551	T	A	SNP	AVPR1B	NM_000707	human	genbank	54_36p	1	reviewed	missense	c.488	p.I163N	0.97	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LGTN	1939	broad.mit.edu	36	1	204839560	204839560	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	204839560	204839560	G	T	SNP	LGTN	NM_006893	human	genbank	54_36p	-1	reviewed	missense	c.1082	p.S361Y	0.98	NULL	"superfamily_PUA domain-like,HMMSmart_SM00359,superfamily_SWIB/MDM2 domain,superfamily_eIF1-like,HMMPfam_SUI1"	-	no_errors
IL24	11009	broad.mit.edu	36	1	205142011	205142011	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	205142011	205142011	T	A	SNP	IL24	NM_006850	human	genbank	54_36p	1	reviewed	missense	c.508	p.F170I	0.48	superfamily_4_helix_cytokine	"superfamily_4_helix_cytokine,PatternScan_INTERLEUKIN_10"	-	no_errors
PIGR	5284	broad.mit.edu	36	1	205173109	205173109	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	205173109	205173109	C	A	SNP	PIGR	NM_002644	human	genbank	54_36p	-1	provisional	missense	c.1731	p.K577N	0	NULL	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
C1orf116	79098	broad.mit.edu	36	1	205263026	205263026	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	205263026	205263026	A	G	SNP	C1orf116	NM_023938	human	genbank	54_36p	-1	validated	missense	c.706	p.S236P	0.01	NULL	NULL	-	no_errors
YOD1	55432	broad.mit.edu	36	1	205289203	205289203	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	205289203	205289203	G	T	SNP	YOD1	NM_018566	human	genbank	54_36p	-1	validated	missense	c.832	p.P278T	1	NULL	"superfamily_Ubiquitin-like,superfamily_Cysteine proteinases,HMMPfam_OTU,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
YOD1	55432	broad.mit.edu	36	1	205289356	205289364	+	In_Frame_Del	DEL	TCGATATCT	-	TCGATATCT	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	TCGATATCT	TCGATATCT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	205289356	205289364	TCGATATCT	-	DEL	YOD1	NM_018566	human	genbank	54_36p	-1	validated	in_frame_del	c.679_671	p.EISI224in_frame_delV	1.000:0.996:1.000:1.000:0.994:1.000:1.000:1.000:1.000	"superfamily_Cysteine proteinases,HMMPfam_OTU"	"superfamily_Ubiquitin-like,superfamily_Cysteine proteinases,HMMPfam_OTU,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[205288988,205289691])"	no_errors
YOD1	55432	broad.mit.edu	36	1	205290841	205290841	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	205290841	205290841	G	C	SNP	YOD1	NM_018566	human	genbank	54_36p	-1	validated	missense	c.158	p.A53G	1	superfamily_Ubiquitin-like	"HMMPfam_OTU,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Cysteine proteinases,superfamily_Ubiquitin-like"	-	no_errors
PFKFB2	5208	broad.mit.edu	36	1	205303127	205303127	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	205303127	205303127	G	T	SNP	PFKFB2	NM_006212	human	genbank	54_36p	1	reviewed	missense	c.325	p.A109S	1	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like,PatternScan_PG_MUTASE"	-	no_errors
C4BPA	722	broad.mit.edu	36	1	205383942	205383942	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	205383942	205383942	A	T	SNP	C4BPA	NM_000715	human	genbank	54_36p	1	reviewed	missense	c.1601	p.E534V	0.65	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CD55	1604	broad.mit.edu	36	1	205562361	205562361	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	205562361	205562361	C	A	SNP	CD55	NM_000574	human	genbank	54_36p	1	reviewed	missense	c.112	p.L38I	0	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
CR2	1380	broad.mit.edu	36	1	205706730	205706730	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	205706730	205706730	G	T	SNP	CR2	NM_001006658	human	genbank	54_36p	1	validated	nonsense	c.295	p.G99*	0.09	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
CR1	1378	broad.mit.edu	36	1	205856626	205856626	+	Missense_Mutation	SNP	A	A	G	rs55770942	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	205856626	205856626	A	G	SNP	CR1	NM_000651	human	genbank	54_36p	1	reviewed	missense	c.6745	p.I2249V	0.04	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	no_errors
PLXNA2	5362	broad.mit.edu	36	1	206283066	206283066	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	206283066	206283066	G	A	SNP	PLXNA2	NM_025179	human	genbank	54_36p	-1	reviewed	missense	c.3980	p.P1327L	1	HMMPfam_Plexin_cytopl	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	-	no_errors
PLXNA2	5362	broad.mit.edu	36	1	206336085	206336085	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	206336085	206336085	C	G	SNP	PLXNA2	NM_025179	human	genbank	54_36p	-1	reviewed	missense	c.1894	p.G632R	1	NULL	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat"	-	no_errors
IRF6	3664	broad.mit.edu	36	1	208035326	208035326	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	208035326	208035326	T	C	SNP	IRF6	NM_006147	human	genbank	54_36p	-1	reviewed	missense	c.440	p.E147G	1	NULL	"HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3"	-	no_errors
SYT14	255928	broad.mit.edu	36	1	208261190	208261190	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	208261190	208261190	A	T	SNP	SYT14	NM_153262	human	genbank	54_36p	1	validated	missense	c.410	p.D137V	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
RCOR3	55758	broad.mit.edu	36	1	209552736	209552736	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	209552736	209552736	A	G	SNP	RCOR3	NM_018254	human	genbank	54_36p	1	validated	missense	c.953	p.N318S	1	"superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	"HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
SLC30A1	7779	broad.mit.edu	36	1	209815859	209815865	+	Frame_Shift_Del	DEL	CAGATTC	-	CAGATTC	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	CAGATTC	CAGATTC	-	-	CAGATTC	CAGATTC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	209815859	209815865	CAGATTC	-	DEL	SLC30A1	NM_021194	human	genbank	54_36p	-1	validated	frame_shift_del	c.1018_1012	p.E338fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	"(deletion:cds_exon[209815353,209816254])"	no_errors
LPGAT1	9926	broad.mit.edu	36	1	210023255	210023255	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	210023255	210023255	C	G	SNP	LPGAT1	NM_014873	human	genbank	54_36p	-1	validated	missense	c.666	p.L222F	1	NULL	"superfamily_Glycerol-3-phosphate (1)-acyltransferase,HMMSmart_SM00563"	-	no_errors
PPP2R5A	5525	broad.mit.edu	36	1	210596633	210596633	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	1	210596633	210596633	C	A	SNP	PPP2R5A	NM_006243	human	genbank	54_36p	1	reviewed	missense	c.970	p.Q324K	1	"superfamily_ARM repeat,HMMPfam_B56"	"superfamily_ARM repeat,HMMPfam_B56"	-	no_errors
FAM71A	149647	broad.mit.edu	36	1	210865159	210865159	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	210865159	210865159	A	T	SNP	FAM71A	NM_153606	human	genbank	54_36p	1	predicted	missense	c.317	p.K106M	0.14	NULL	NULL	-	no_errors
FLVCR1	28982	broad.mit.edu	36	1	211103748	211103748	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	211103748	211103748	A	C	SNP	FLVCR1	NM_014053	human	genbank	54_36p	1	validated	missense	c.797	p.D266A	0.95	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
RPS6KC1	26750	broad.mit.edu	36	1	211480670	211480670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	211480670	211480670	G	A	SNP	RPS6KC1	NM_012424	human	genbank	54_36p	1	validated	missense	c.1228	p.G410S	1	superfamily_Protein kinase-like (PK-like)	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00745,HMMPfam_MIT,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	-	no_errors
PROX1	5629	broad.mit.edu	36	1	212236888	212236888	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	1	212236888	212236888	C	T	SNP	PROX1	NM_002763	human	genbank	54_36p	1	provisional	silent	c.387	p.C129	1	HMMPfam_Prox1	"HMMPfam_Prox1,superfamily_Homeodomain_like"	-	no_errors
PROX1	5629	broad.mit.edu	36	1	212237324	212237324	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	212237324	212237324	T	A	SNP	PROX1	NM_002763	human	genbank	54_36p	1	provisional	missense	c.823	p.S275T	1	HMMPfam_Prox1	"HMMPfam_Prox1,superfamily_Homeodomain_like"	-	no_errors
PROX1	5629	broad.mit.edu	36	1	212238066	212238066	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	212238066	212238066	C	G	SNP	PROX1	NM_002763	human	genbank	54_36p	1	provisional	missense	c.1565	p.T522R	1	HMMPfam_Prox1	"HMMPfam_Prox1,superfamily_Homeodomain_like"	-	no_errors
PTPN14	5784	broad.mit.edu	36	1	212704749	212704749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	212704749	212704749	G	A	SNP	PTPN14	NM_005401	human	genbank	54_36p	-1	reviewed	silent	c.21	p.L7	0.98	NULL	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
CENPF	1063	broad.mit.edu	36	1	212879925	212879925	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	212879925	212879925	C	T	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	nonsense	c.1621	p.Q541*	0.96	NULL	"HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F"	-	no_errors
CENPF	1063	broad.mit.edu	36	1	212880170	212880170	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	212880170	212880170	G	A	SNP	CENPF	NM_016343	human	genbank	54_36p	1	reviewed	nonsense	c.1866	p.W622*	1	NULL	"superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F,HMMPfam_Cenp-F_N,HMMPfam_Cenp-F_leu_zip,superfamily_Spectrin repeat"	-	no_errors
KCTD3	51133	broad.mit.edu	36	1	213851829	213851829	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	213851829	213851829	A	G	SNP	KCTD3	NM_016121	human	genbank	54_36p	1	validated	missense	c.1505	p.Q502R	1	superfamily_WD40 repeat-like	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1"	-	no_errors
RRP15	51018	broad.mit.edu	36	1	216545005	216545005	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	216545005	216545005	C	A	SNP	RRP15	NM_016052	human	genbank	54_36p	1	reviewed	missense	c.418	p.L140M	1	HMMPfam_Rrp15p	HMMPfam_Rrp15p	-	no_errors
RAB3GAP2	25782	broad.mit.edu	36	1	218404757	218404757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	218404757	218404757	C	T	SNP	RAB3GAP2	NM_012414	human	genbank	54_36p	-1	validated	missense	c.3095	p.R1032H	1	NULL	NULL	-	no_errors
MARK1	4139	broad.mit.edu	36	1	218875427	218875427	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	218875427	218875427	C	G	SNP	MARK1	NM_018650	human	genbank	54_36p	1	validated	silent	c.1209	p.S403	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_UBA,HMMSmart_SM00165,superfamily_Kinase associated domain 1 KA1,HMMPfam_KA1"	-	no_errors
HLX	3142	broad.mit.edu	36	1	219119876	219119876	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	219119876	219119876	G	T	SNP	HLX	NM_021958	human	genbank	54_36p	1	validated	silent	c.54	p.S18	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HLX	3142	broad.mit.edu	36	1	219122164	219122164	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	219122164	219122164	C	G	SNP	HLX	NM_021958	human	genbank	54_36p	1	validated	missense	c.808	p.Q270E	1	superfamily_Homeodomain_like	"HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1"	-	no_errors
MIA3	375056	broad.mit.edu	36	1	220868349	220868349	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	220868349	220868349	C	G	SNP	MIA3	NM_198551	human	genbank	54_36p	1	validated	missense	c.1164	p.F388L	0.94	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2"	-	no_errors
MIA3	375056	broad.mit.edu	36	1	220905509	220905509	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	220905509	220905509	C	T	SNP	MIA3	NM_198551	human	genbank	54_36p	1	validated	silent	c.5649	p.G1883	0	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2"	-	no_errors
TLR5	7100	broad.mit.edu	36	1	221351593	221351593	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	221351593	221351593	G	T	SNP	TLR5	NM_003268	human	genbank	54_36p	-1	validated	silent	c.1404	p.T468	0.01	superfamily_SSF52058	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
TP53BP2	7159	broad.mit.edu	36	1	222052709	222052709	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	222052709	222052709	G	A	SNP	TP53BP2	NM_001031685	human	genbank	54_36p	-1	reviewed	silent	c.1779	p.P593	0.97	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
FBXO28	23219	broad.mit.edu	36	1	222388418	222388418	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	222388418	222388418	A	T	SNP	FBXO28	NM_015176	human	genbank	54_36p	1	validated	missense	c.397	p.N133Y	1	NULL	HMMPfam_F-box	-	no_errors
CNIH4	29097	broad.mit.edu	36	1	222614833	222614833	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	222614833	222614833	C	T	SNP	CNIH4	NM_014184	human	genbank	54_36p	1	provisional	missense	c.83	p.S28F	1	HMMPfam_Cornichon	HMMPfam_Cornichon	-	no_errors
CNIH4	29097	broad.mit.edu	36	1	222625632	222625632	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	222625632	222625632	C	A	SNP	CNIH4	NM_014184	human	genbank	54_36p	1	provisional	missense	c.276	p.N92K	1	HMMPfam_Cornichon	HMMPfam_Cornichon	-	no_errors
LBR	3930	broad.mit.edu	36	1	223664643	223664643	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	223664643	223664643	G	C	SNP	LBR	NM_002296	human	genbank	54_36p	-1	reviewed	silent	c.1287	p.L429	0.32	HMMPfam_ERG4_ERG24	"HMMPfam_LBR_tudor,HMMSmart_TUDOR,HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2"	-	no_errors
LBR	3930	broad.mit.edu	36	1	223676487	223676487	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	223676487	223676487	G	C	SNP	LBR	NM_002296	human	genbank	54_36p	-1	reviewed	missense	c.281	p.A94G	0.04	NULL	"HMMPfam_ERG4_ERG24,HMMSmart_TUDOR,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2,HMMPfam_LBR_tudor"	-	no_errors
EPHX1	2052	broad.mit.edu	36	1	224086101	224086101	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	224086101	224086101	A	T	SNP	EPHX1	NM_000120	human	genbank	54_36p	1	reviewed	splice_site	c.184-2	e2-2	0.99	-	-	-	no_errors
EPHX1	2052	broad.mit.edu	36	1	224094163	224094163	+	Missense_Mutation	SNP	G	G	C	rs66903687	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	224094163	224094163	G	C	SNP	EPHX1	NM_000120	human	genbank	54_36p	1	reviewed	missense	c.733	p.G245R	1	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	"superfamily_SSF53474,HMMPfam_EHN,HMMPfam_Abhydrolase_1"	-	no_errors
EPHX1	2052	broad.mit.edu	36	1	224096788	224096788	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	224096788	224096788	G	A	SNP	EPHX1	NM_000120	human	genbank	54_36p	1	reviewed	missense	c.1030	p.G344S	1	"HMMPfam_Abhydrolase_1,superfamily_SSF53474"	"HMMPfam_Abhydrolase_1,HMMPfam_EHN,superfamily_SSF53474"	-	no_errors
LEFTY1	10637	broad.mit.edu	36	1	224141128	224141128	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	224141128	224141128	G	T	SNP	LEFTY1	NM_020997	human	genbank	54_36p	-1	reviewed	silent	c.1023	p.V341	1	"superfamily_SSF57501,HMMSmart_TGFB"	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
PARP1	142	broad.mit.edu	36	1	224633543	224633543	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	224633543	224633543	G	A	SNP	PARP1	NM_001618	human	genbank	54_36p	-1	reviewed	silent	c.1668	p.T556	0.98	"HMMPfam_WGR,HMMSmart_SM00773"	###############################################################################################################################################################################################################################################################	-	no_errors
C1orf95	375057	broad.mit.edu	36	1	224851216	224851216	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	224851216	224851216	C	A	SNP	C1orf95	NM_001003665	human	genbank	54_36p	1	predicted	missense	c.293	p.A98E	0.99	NULL	NULL	-	no_errors
C1orf95	375057	broad.mit.edu	36	1	224851224	224851224	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	224851224	224851224	C	G	SNP	C1orf95	NM_001003665	human	genbank	54_36p	1	predicted	missense	c.301	p.L101V	1	NULL	NULL	-	no_errors
ITPKB	3707	broad.mit.edu	36	1	224989954	224989956	+	In_Frame_Del	DEL	GAG	-	GAG	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	GAG	GAG	-	-	GAG	GAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	224989954	224989956	GAG	-	DEL	ITPKB	NM_002221	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1829_1827	p.S611in_frame_del	0.998:1.000:1.000	NULL	"HMMPfam_IPK,superfamily_SAICAR synthase-like"	"(deletion:cds_exon[224989851,224991782])"	no_errors
CDC42BPA	8476	broad.mit.edu	36	1	225289083	225289083	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	225289083	225289083	C	T	SNP	CDC42BPA	NM_003607	human	genbank	54_36p	-1	reviewed	silent	c.3267	p.Q1089	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	###############################################################################################################################################################################################################################################################	-	no_errors
JMJD4	65094	broad.mit.edu	36	1	225987948	225987948	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	225987948	225987948	C	G	SNP	JMJD4	NM_023007	human	genbank	54_36p	-1	provisional	silent	c.750	p.G250	1	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
WNT9A	7483	broad.mit.edu	36	1	226176150	226176150	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	226176150	226176150	C	T	SNP	WNT9A	NM_003395	human	genbank	54_36p	-1	validated	missense	c.790	p.A264T	0.97	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
OBSCN	84033	broad.mit.edu	36	1	226466919	226466919	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	226466919	226466919	G	A	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	nonsense	c.812	p.W271*	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	###############################################################################################################################################################################################################################################################	-	no_errors
OBSCN	84033	broad.mit.edu	36	1	226468736	226468736	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	226468736	226468736	G	T	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	silent	c.1497	p.T499	0.08	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
OBSCN	84033	broad.mit.edu	36	1	226471507	226471507	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	226471507	226471507	G	T	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	missense	c.2548	p.G850W	0.52	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
OBSCN	84033	broad.mit.edu	36	1	226536469	226536469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	226536469	226536469	G	A	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	missense	c.8410	p.A2804T	0.98	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
OBSCN	84033	broad.mit.edu	36	1	226576369	226576369	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	226576369	226576369	C	A	SNP	OBSCN	NM_001098623	human	genbank	54_36p	1	reviewed	silent	c.15204	p.A5068	0.36	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HIST3H2A	92815	broad.mit.edu	36	1	226711851	226711851	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	226711851	226711851	C	T	SNP	HIST3H2A	NM_033445	human	genbank	54_36p	-1	reviewed	silent	c.291	p.L97	1	"superfamily_Histone-fold,HMMSmart_SM00414"	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
NUP133	55746	broad.mit.edu	36	1	227697889	227697889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	227697889	227697889	C	T	SNP	NUP133	NM_018230	human	genbank	54_36p	-1	reviewed	missense	c.1022	p.R341Q	0.09	HMMPfam_Nup133_N	"HMMPfam_Nup133_N,HMMPfam_Nup133"	-	no_errors
URB2	9816	broad.mit.edu	36	1	227839846	227839846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	227839846	227839846	G	A	SNP	URB2	NM_014777	human	genbank	54_36p	1	provisional	missense	c.2863	p.G955R	0.4	NULL	HMMPfam_Urb2	-	no_errors
GALNT2	2590	broad.mit.edu	36	1	228405525	228405525	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	228405525	228405525	C	T	SNP	GALNT2	NM_004481	human	genbank	54_36p	1	reviewed	silent	c.240	p.D80	1	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
PGBD5	79605	broad.mit.edu	36	1	228564695	228564695	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	228564695	228564695	T	C	SNP	PGBD5	NM_024554	human	genbank	54_36p	-1	reviewed	missense	c.368	p.N123S	0.01	NULL	NULL	-	no_errors
PGBD5	79605	broad.mit.edu	36	1	228579888	228579888	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	228579888	228579888	G	A	SNP	PGBD5	NM_024554	human	genbank	54_36p	-1	reviewed	nonsense	c.103	p.Q35*	0	NULL	NULL	-	no_errors
CAPN9	10753	broad.mit.edu	36	1	228992534	228992534	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	228992534	228992534	G	A	SNP	CAPN9	NM_006615	human	genbank	54_36p	1	reviewed	missense	c.1633	p.V545I	0.89	superfamily_EF-hand	###############################################################################################################################################################################################################################################################	-	no_errors
TTC13	79573	broad.mit.edu	36	1	229127284	229127284	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	229127284	229127284	C	T	SNP	TTC13	NM_024525	human	genbank	54_36p	-1	validated	silent	c.1647	p.S549	0.99	NULL	"HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2"	-	no_errors
TRIM67	440730	broad.mit.edu	36	1	229417775	229417775	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	229417775	229417775	C	A	SNP	TRIM67	NM_001004342	human	genbank	54_36p	1	validated	missense	c.2318	p.T773N	0.44	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
GNPAT	8443	broad.mit.edu	36	1	229477797	229477797	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	229477797	229477797	T	G	SNP	GNPAT	NM_014236	human	genbank	54_36p	1	reviewed	missense	c.1867	p.L623V	0.04	NULL	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	-	no_errors
SIPA1L2	57568	broad.mit.edu	36	1	230717031	230717031	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	230717031	230717031	G	C	SNP	SIPA1L2	NM_020808	human	genbank	54_36p	-1	validated	silent	c.678	p.V226	0.09	NULL	"superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
KIAA1804	84451	broad.mit.edu	36	1	231578332	231578332	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	231578332	231578332	C	T	SNP	KIAA1804	NM_032435	human	genbank	54_36p	1	validated	nonsense	c.1723	p.R575*	0.11	NULL	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SLC35F3	148641	broad.mit.edu	36	1	232518986	232518986	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	232518986	232518986	C	A	SNP	SLC35F3	NM_173508	human	genbank	54_36p	1	provisional	missense	c.844	p.L282I	1	"superfamily_SSF103481,HMMPfam_DUF6"	"superfamily_SSF103481,HMMPfam_DUF6"	-	no_errors
TARBP1	6894	broad.mit.edu	36	1	232631978	232631978	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	232631978	232631978	C	T	SNP	TARBP1	NM_005646	human	genbank	54_36p	-1	reviewed	nonsense	c.2678	p.W893*	1	NULL	"superfamily_ARM-type_fold,superfamily_SSF75217,HMMPfam_SpoU_methylase"	-	no_errors
ARID4B	51742	broad.mit.edu	36	1	233412052	233412052	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	233412052	233412052	C	T	SNP	ARID4B	NM_016374	human	genbank	54_36p	-1	reviewed	nonsense	c.2805	p.W935*	1	NULL	"HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
GGPS1	9453	broad.mit.edu	36	1	233565205	233565205	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	233565205	233565205	G	C	SNP	GGPS1	NM_001037277	human	genbank	54_36p	1	reviewed	missense	c.3	p.M1I	1	NULL	"superfamily_Terpenoid_synth,HMMPfam_polyprenyl_synt,PatternScan_POLYPRENYL_SYNTHET_1,PatternScan_POLYPRENYL_SYNTHET_2"	-	no_errors
LYST	1130	broad.mit.edu	36	1	233907505	233907505	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	233907505	233907505	T	C	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.10838	p.Y3613C	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"PatternScan_COPPER_BLUE,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LYST	1130	broad.mit.edu	36	1	234038960	234038960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	234038960	234038960	G	T	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.1781	p.P594H	1	NULL	"HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
LYST	1130	broad.mit.edu	36	1	234060259	234060259	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	234060259	234060259	C	T	SNP	LYST	NM_000081	human	genbank	54_36p	-1	reviewed	missense	c.82	p.E28K	1	NULL	"HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
EDARADD	128178	broad.mit.edu	36	1	234712306	234712306	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	234712306	234712306	A	C	SNP	EDARADD	NM_145861	human	genbank	54_36p	1	reviewed	missense	c.382	p.K128Q	1	HMMPfam_Death	HMMPfam_Death	-	no_errors
HEATR1	55127	broad.mit.edu	36	1	234814953	234814953	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	234814953	234814953	C	T	SNP	HEATR1	NM_018072	human	genbank	54_36p	-1	validated	missense	c.2236	p.A746T	0.09	NULL	"superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT"	-	no_errors
ACTN2	88	broad.mit.edu	36	1	234987502	234987502	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	234987502	234987502	A	G	SNP	ACTN2	NM_001103	human	genbank	54_36p	1	reviewed	missense	c.2248	p.I750V	1	superfamily_EF-hand	###############################################################################################################################################################################################################################################################	-	no_errors
MTR	4548	broad.mit.edu	36	1	235082450	235082450	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	235082450	235082450	T	C	SNP	MTR	NM_000254	human	genbank	54_36p	1	reviewed	silent	c.1702	p.L568	0.96	"HMMPfam_Pterin_bind,superfamily_Dihydropteroate synthetase-like"	###############################################################################################################################################################################################################################################################	-	no_errors
RYR2	6262	broad.mit.edu	36	1	235560833	235560833	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	1	235560833	235560833	T	C	SNP	RYR2	ENST00000366574	human	ensembl	54_36p	1	known	missense	c.194	p.L65S	1	HMMPfam_Ins145_P3_rec	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
RYR2	6262	broad.mit.edu	36	1	235726661	235726661	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	235726661	235726661	T	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.2189	p.L730P	1	"HMMPfam_SPRY,HMMSmart_SM00449"	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	broad.mit.edu	36	1	235844443	235844443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	235844443	235844443	G	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.5392	p.A1798S	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	broad.mit.edu	36	1	235869021	235869021	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	235869021	235869021	G	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.7012	p.E2338Q	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	broad.mit.edu	36	1	235878517	235878517	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	235878517	235878517	C	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.7493	p.A2498V	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	broad.mit.edu	36	1	235947210	235947210	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	235947210	235947210	G	C	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	missense	c.10413	p.K3471N	0.82	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR2	6262	broad.mit.edu	36	1	236013917	236013917	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	1	236013917	236013917	C	T	SNP	RYR2	NM_001035	human	genbank	54_36p	1	reviewed	silent	c.12282	p.I4094	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
ZP4	57829	broad.mit.edu	36	1	236118301	236118301	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	236118301	236118301	G	A	SNP	ZP4	NM_021186	human	genbank	54_36p	-1	reviewed	missense	c.533	p.S178F	0.68	"superfamily_Trefoil,HMMSmart_SM00018,HMMPfam_Trefoil"	"superfamily_Trefoil,HMMSmart_SM00018,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
CHRM3	1131	broad.mit.edu	36	1	238137855	238137855	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	238137855	238137855	G	T	SNP	CHRM3	NM_000740	human	genbank	54_36p	1	reviewed	missense	c.481	p.V161F	1	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CHRM3	1131	broad.mit.edu	36	1	238138838	238138838	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	238138838	238138838	A	G	SNP	CHRM3	NM_000740	human	genbank	54_36p	1	reviewed	silent	c.1464	p.K488	0.99	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
FMN2	56776	broad.mit.edu	36	1	238322206	238322206	+	Silent	SNP	C	C	G	rs71168893	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	238322206	238322206	C	G	SNP	FMN2	NM_020066	human	genbank	54_36p	1	validated	silent	c.603	p.G201	0.37	NULL	"PatternScan_LECTIN_LEGUME_BETA,HMMSmart_SM00498,HMMPfam_Drf_FH1,superfamily_Formin homology 2 domain (FH2 domain),HMMPfam_FH2"	-	no_errors
FMN2	56776	broad.mit.edu	36	1	238418141	238418141	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	238418141	238418141	G	C	SNP	FMN2	NM_020066	human	genbank	54_36p	1	validated	missense	c.2371	p.A791P	1	NULL	"HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain),PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
FMN2	56776	broad.mit.edu	36	1	238437498	238437498	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	238437498	238437498	T	C	SNP	FMN2	NM_020066	human	genbank	54_36p	1	validated	silent	c.3192	p.P1064	0.07	"HMMSmart_SM00498,HMMPfam_Drf_FH1"	"HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain),PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
FMN2	56776	broad.mit.edu	36	1	238437689	238437689	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	238437689	238437689	G	C	SNP	FMN2	NM_020066	human	genbank	54_36p	1	validated	missense	c.3383	p.G1128A	0	"HMMSmart_SM00498,HMMPfam_Drf_FH1"	"HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain),PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
FMN2	56776	broad.mit.edu	36	1	238438545	238438545	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	238438545	238438545	C	A	SNP	FMN2	NM_020066	human	genbank	54_36p	1	validated	silent	c.4239	p.G1413	0.95	"HMMSmart_SM00498,superfamily_Formin homology 2 domain (FH2 domain)"	"HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain),PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
RGS7	6000	broad.mit.edu	36	1	239043642	239043642	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	239043642	239043642	A	T	SNP	RGS7	NM_002924	human	genbank	54_36p	-1	validated	missense	c.855	p.S285R	0.99	"superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL"	"superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS"	-	no_errors
CHML	1122	broad.mit.edu	36	1	239864667	239864667	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	239864667	239864667	G	T	SNP	CHML	NM_001821	human	genbank	54_36p	-1	reviewed	nonsense	c.1025	p.S342*	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
CHML	1122	broad.mit.edu	36	1	239864885	239864885	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	239864885	239864885	C	A	SNP	CHML	NM_001821	human	genbank	54_36p	-1	reviewed	silent	c.807	p.R269	0.04	"HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
EXO1	9156	broad.mit.edu	36	1	240102020	240102020	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	1	240102020	240102020	A	C	SNP	EXO1	NM_006027	human	genbank	54_36p	1	reviewed	missense	c.1331	p.K444T	0.93	NULL	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
PLD5	200150	broad.mit.edu	36	1	240319968	240319968	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	240319968	240319968	T	G	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	silent	c.1146	p.A382	1	superfamily_SSF56024	"superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope"	-	no_errors
PLD5	200150	broad.mit.edu	36	1	240330665	240330665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	240330665	240330665	C	G	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.1006	p.E336Q	1	superfamily_SSF56024	"HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024"	-	no_errors
PLD5	200150	broad.mit.edu	36	1	240450028	240450028	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	240450028	240450028	G	A	SNP	PLD5	NM_152666	human	genbank	54_36p	-1	provisional	missense	c.344	p.T115M	0.94	superfamily_SSF56024	"HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024"	-	no_errors
ZNF238	10472	broad.mit.edu	36	1	242284516	242284516	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	242284516	242284516	G	A	SNP	ZNF238	NM_205768	human	genbank	54_36p	1	validated	missense	c.817	p.V273M	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF238	10472	broad.mit.edu	36	1	242284894	242284894	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	242284894	242284894	A	T	SNP	ZNF238	NM_205768	human	genbank	54_36p	1	validated	missense	c.1195	p.S399C	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF238	10472	broad.mit.edu	36	1	242285143	242285143	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	242285143	242285143	C	T	SNP	ZNF238	NM_205768	human	genbank	54_36p	1	validated	missense	c.1444	p.R482C	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
HNRNPU	3192	broad.mit.edu	36	1	243093737	243093737	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	243093737	243093737	G	A	SNP	HNRNPU	NM_031844	human	genbank	54_36p	-1	reviewed	missense	c.496	p.P166S	1	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,HMMSmart_SM00449,HMMPfam_SPRY,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF26B	55083	broad.mit.edu	36	1	243832597	243832612	+	Frame_Shift_Del	DEL	CTTGTACGATCCCCTG	-	CTTGTACGATCCCCTG	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	CTTGTACGATCCCCTG	CTTGTACGATCCCCTG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	1	243832597	243832612	CTTGTACGATCCCCTG	-	DEL	KIF26B	NM_018012	human	genbank	54_36p	1	provisional	frame_shift_del	c.1446_1461	p.Y484fs	0.862:0.850:0.977:0.974:0.995:0.998:0.998:1.000:1.000:0.994:1.000:0.997:0.386:0.408:0.792:0.800	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	"(deletion:cds_exon[243832502,243832708])"	no_errors
AHCTF1	25909	broad.mit.edu	36	1	245092075	245092075	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	245092075	245092075	C	A	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.3544	p.A1182S	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
AHCTF1	25909	broad.mit.edu	36	1	245146189	245146189	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	245146189	245146189	C	T	SNP	AHCTF1	NM_015446	human	genbank	54_36p	-1	validated	missense	c.253	p.E85K	1	NULL	"PatternScan_TUBULIN_B_AUTOREG,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
ZNF670	93474	broad.mit.edu	36	1	245267814	245267814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	245267814	245267814	C	T	SNP	ZNF670	NM_033213	human	genbank	54_36p	-1	validated	missense	c.730	p.E244K	0.69	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
VN1R5	317705	broad.mit.edu	36	1	245486642	245486642	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	245486642	245486642	G	C	SNP	VN1R5	NM_173858	human	genbank	54_36p	1	validated	missense	c.646	p.V216L	0	NULL	HMMPfam_V1R	-	pseudogene
VN1R5	317705	broad.mit.edu	36	1	245486694	245486694	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	245486694	245486694	C	T	SNP	VN1R5	NM_173858	human	genbank	54_36p	1	validated	missense	c.698	p.P233L	0	NULL	HMMPfam_V1R	-	pseudogene
VN1R5	317705	broad.mit.edu	36	1	245486883	245486883	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	245486883	245486883	T	C	SNP	VN1R5	NM_173858	human	genbank	54_36p	1	validated	missense	c.887	p.I296T	0	NULL	HMMPfam_V1R	-	pseudogene
NLRP3	114548	broad.mit.edu	36	1	245654785	245654785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	245654785	245654785	G	A	SNP	NLRP3	NM_001079821	human	genbank	54_36p	1	reviewed	missense	c.1417	p.A473T	1	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1"	-	no_errors
OR2B11	127623	broad.mit.edu	36	1	245681128	245681128	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	245681128	245681128	A	T	SNP	OR2B11	NM_001004492	human	genbank	54_36p	-1	provisional	silent	c.780	p.I260	0.98	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR11L1	391189	broad.mit.edu	36	1	246071712	246071712	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246071712	246071712	A	T	SNP	OR11L1	NM_001001959	human	genbank	54_36p	-1	provisional	missense	c.110	p.L37Q	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TRIM58	25893	broad.mit.edu	36	1	246106268	246106268	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	246106268	246106268	C	A	SNP	TRIM58	NM_015431	human	genbank	54_36p	1	validated	missense	c.1315	p.L439I	0.04	"HMMPfam_SPRY,HMMSmart_SPRY"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
TRIM58	25893	broad.mit.edu	36	1	246106327	246106327	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246106327	246106327	G	A	SNP	TRIM58	NM_015431	human	genbank	54_36p	1	validated	silent	c.1374	p.L458	0	"HMMPfam_SPRY,HMMSmart_SPRY"	"HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,HMMSmart_PRY,PatternScan_ZF_RING_1,HMMSmart_SPRY,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
OR2W3	343171	broad.mit.edu	36	1	246126017	246126017	+	Missense_Mutation	SNP	G	G	A	rs12083024	"by-frequency,by-hapmap"	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246126017	246126017	G	A	SNP	OR2W3	NM_001001957	human	genbank	54_36p	1	provisional	missense	c.506	p.C169Y	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2L2	26246	broad.mit.edu	36	1	246268229	246268229	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246268229	246268229	T	A	SNP	OR2L2	NM_001004686	human	genbank	54_36p	1	provisional	missense	c.37	p.L13I	0.32	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2L13	284521	broad.mit.edu	36	1	246329995	246329995	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246329995	246329995	G	A	SNP	OR2L13	NM_175911	human	genbank	54_36p	1	provisional	missense	c.695	p.G232E	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2M5	127059	broad.mit.edu	36	1	246375162	246375162	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246375162	246375162	G	T	SNP	OR2M5	NM_001004690	human	genbank	54_36p	1	provisional	silent	c.90	p.L30	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2M5	127059	broad.mit.edu	36	1	246375175	246375175	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246375175	246375175	T	A	SNP	OR2M5	NM_001004690	human	genbank	54_36p	1	provisional	missense	c.103	p.F35I	0.01	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR2M2	391194	broad.mit.edu	36	1	246409927	246409927	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246409927	246409927	A	G	SNP	OR2M2	NM_001004688	human	genbank	54_36p	1	provisional	missense	c.17	p.Q6R	0.67	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2M2	391194	broad.mit.edu	36	1	246409972	246409972	+	Missense_Mutation	SNP	G	G	A	rs34678055	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246409972	246409972	G	A	SNP	OR2M2	NM_001004688	human	genbank	54_36p	1	provisional	missense	c.62	p.S21N	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR2M2	391194	broad.mit.edu	36	1	246410342	246410342	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246410342	246410342	G	A	SNP	OR2M2	NM_001004688	human	genbank	54_36p	1	provisional	missense	c.432	p.M144I	0.01	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR2M3	127062	broad.mit.edu	36	1	246433390	246433390	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246433390	246433390	C	A	SNP	OR2M3	NM_001004689	human	genbank	54_36p	1	provisional	missense	c.398	p.T133N	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T12	127064	broad.mit.edu	36	1	246525061	246525061	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246525061	246525061	A	T	SNP	OR2T12	NM_001004692	human	genbank	54_36p	-1	provisional	missense	c.443	p.L148H	0.03	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR14C36	127066	broad.mit.edu	36	1	246579363	246579363	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246579363	246579363	A	C	SNP	OR14C36	NM_001001918	human	genbank	54_36p	1	provisional	missense	c.664	p.T222P	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR2T6	254879	broad.mit.edu	36	1	246617796	246617796	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246617796	246617796	C	T	SNP	OR2T6	NM_001005471	human	genbank	54_36p	1	provisional	silent	c.264	p.G88	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T2	401992	broad.mit.edu	36	1	246683636	246683636	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	246683636	246683636	A	C	SNP	OR2T2	NM_001004136	human	genbank	54_36p	1	provisional	silent	c.915	p.V305	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T5	401993	broad.mit.edu	36	1	246718638	246718638	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	246718638	246718638	G	C	SNP	OR2T5	NM_001004697	human	genbank	54_36p	1	provisional	silent	c.126	p.A42	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2T5	401993	broad.mit.edu	36	1	246718654	246718654	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	246718654	246718654	G	C	SNP	OR2T5	NM_001004697	human	genbank	54_36p	1	provisional	missense	c.142	p.V48L	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR2G6	391211	broad.mit.edu	36	1	246751966	246751966	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	246751966	246751966	C	T	SNP	OR2G6	NM_001013355	human	genbank	54_36p	1	validated	silent	c.396	p.Y132	0.15	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2G6	391211	broad.mit.edu	36	1	246752338	246752338	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	246752338	246752338	A	T	SNP	OR2G6	NM_001013355	human	genbank	54_36p	1	validated	silent	c.768	p.I256	0.01	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
SH3BP5L	80851	broad.mit.edu	36	1	247072914	247072914	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	247072914	247072914	G	A	SNP	SH3BP5L	NM_030645	human	genbank	54_36p	-1	provisional	silent	c.990	p.T330	0.89	NULL	HMMPfam_SH3BP5	-	no_errors
C2orf90	391343	broad.mit.edu	36	2	895896	895896	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	895896	895896	T	A	SNP	LOC391343	NM_001013662	human	genbank	54_36p	-1	predicted	missense	c.50	p.H17L	0.26	NULL	NULL	-	no_errors
SNTG2	54221	broad.mit.edu	36	2	1069341	1069341	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	1069341	1069341	T	A	SNP	SNTG2	ENST00000308624	human	ensembl	54_36p	1	known	missense	c.210	p.N70K	1	superfamily_PDZ domain-like	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
TPO	7173	broad.mit.edu	36	2	1397218	1397218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	1397218	1397218	C	G	SNP	TPO	NM_000547	human	genbank	54_36p	1	reviewed	missense	c.31	p.L11V	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TPO	7173	broad.mit.edu	36	2	1467407	1467407	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	1467407	1467407	C	T	SNP	TPO	ENST00000308422	human	ensembl	54_36p	1	known	missense	c.391	p.P131S	1	NULL	"HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases"	-	no_start_codon
PXDN	7837	broad.mit.edu	36	2	1631032	1631032	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	1631032	1631032	T	G	SNP	PXDN	NM_012293	human	genbank	54_36p	-1	validated	missense	c.3527	p.Y1176S	1	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	###############################################################################################################################################################################################################################################################	-	no_errors
PXDN	7837	broad.mit.edu	36	2	1649200	1649200	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	1649200	1649200	C	G	SNP	PXDN	NM_012293	human	genbank	54_36p	-1	validated	missense	c.1084	p.E362Q	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
PXDN	7837	broad.mit.edu	36	2	1659804	1659804	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	1659804	1659804	G	C	SNP	PXDN	NM_012293	human	genbank	54_36p	-1	validated	silent	c.750	p.S250	0.98	"HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
PXDN	7837	broad.mit.edu	36	2	1670473	1670473	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	1670473	1670473	G	A	SNP	PXDN	NM_012293	human	genbank	54_36p	-1	validated	silent	c.354	p.Y118	1	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
MYT1L	23040	broad.mit.edu	36	2	1885923	1885923	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	1885923	1885923	A	G	SNP	MYT1L	NM_015025	human	genbank	54_36p	-1	validated	silent	c.1962	p.Y654	1	HMMPfam_MYT1	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1"	-	no_errors
TTC15	51112	broad.mit.edu	36	2	3370557	3370557	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	3370557	3370557	G	A	SNP	TTC15	NM_016030	human	genbank	54_36p	1	validated	silent	c.156	p.S52	0.01	NULL	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
TTC15	51112	broad.mit.edu	36	2	3404746	3404746	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	3404746	3404746	A	C	SNP	TTC15	NM_016030	human	genbank	54_36p	1	validated	missense	c.1252	p.T418P	0.57	superfamily_SSF48452	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
TTC15	51112	broad.mit.edu	36	2	3448385	3448385	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	3448385	3448385	T	C	SNP	TTC15	NM_016030	human	genbank	54_36p	1	validated	missense	c.1688	p.L563P	1	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
COLEC11	78989	broad.mit.edu	36	2	3669376	3669376	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	3669376	3669376	C	T	SNP	COLEC11	NM_024027	human	genbank	54_36p	1	validated	silent	c.609	p.I203	1	"HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C"	"HMMPfam_Collagen,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
ALLC	55821	broad.mit.edu	36	2	3707143	3707143	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	3707143	3707143	G	C	SNP	ALLC	NM_018436	human	genbank	54_36p	1	validated	missense	c.343	p.A115P	0.89	"superfamily_Gal_bind_like,HMMPfam_Allantoicase"	"superfamily_Gal_bind_like,HMMPfam_Allantoicase"	-	no_errors
RSAD2	91543	broad.mit.edu	36	2	6953397	6953397	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	6953397	6953397	C	T	SNP	RSAD2	NM_080657	human	genbank	54_36p	1	validated	missense	c.959	p.P320L	1	NULL	"superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM"	-	no_errors
KIDINS220	57498	broad.mit.edu	36	2	8858020	8858020	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	8858020	8858020	C	T	SNP	KIDINS220	NM_020738	human	genbank	54_36p	-1	validated	silent	c.861	p.A287	0.98	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_KAP_NTPase,superfamily_SAM/Pointed domain"	-	no_errors
KLF11	8462	broad.mit.edu	36	2	10103747	10103747	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	10103747	10103747	G	A	SNP	KLF11	NM_003597	human	genbank	54_36p	1	validated	missense	c.62	p.C21Y	0.98	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
KLF11	8462	broad.mit.edu	36	2	10103874	10103874	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	10103874	10103874	A	T	SNP	KLF11	NM_003597	human	genbank	54_36p	1	validated	missense	c.189	p.K63N	0.85	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
KCNF1	3754	broad.mit.edu	36	2	10970756	10970756	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	10970756	10970756	G	A	SNP	KCNF1	NM_002236	human	genbank	54_36p	1	reviewed	silent	c.753	p.A251	0.86	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_POZ domain,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KCNF1	3754	broad.mit.edu	36	2	10971379	10971379	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	10971379	10971379	A	C	SNP	KCNF1	NM_002236	human	genbank	54_36p	1	reviewed	missense	c.1376	p.K459T	0.63	NULL	"HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels"	-	no_errors
GREB1	9687	broad.mit.edu	36	2	11672796	11672796	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	11672796	11672796	A	T	SNP	GREB1	NM_014668	human	genbank	54_36p	1	reviewed	missense	c.3251	p.N1084I	0.08	NULL	NULL	-	no_errors
LPIN1	23175	broad.mit.edu	36	2	11860585	11860585	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	11860585	11860585	C	A	SNP	LPIN1	NM_145693	human	genbank	54_36p	1	reviewed	missense	c.1880	p.T627N	1	NULL	"HMMPfam_Lipin_N,superfamily_SSF56784,HMMPfam_LNS2,HMMSmart_LNS2"	-	no_errors
LPIN1	23175	broad.mit.edu	36	2	11862055	11862055	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	11862055	11862055	A	G	SNP	LPIN1	NM_145693	human	genbank	54_36p	1	reviewed	missense	c.1961	p.Q654R	1	NULL	"HMMPfam_Lipin_N,HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784"	-	no_errors
NBAS	51594	broad.mit.edu	36	2	15247963	15247963	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	15247963	15247963	T	A	SNP	NBAS	NM_015909	human	genbank	54_36p	-1	validated	missense	c.6448	p.I2150F	0.96	NULL	"superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14"	-	no_errors
DDX1	1653	broad.mit.edu	36	2	15677834	15677834	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	15677834	15677834	G	A	SNP	DDX1	NM_004939	human	genbank	54_36p	1	reviewed	missense	c.1258	p.E420K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMPfam_SPRY,HMMSmart_SM00449,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
VSNL1	7447	broad.mit.edu	36	2	17636864	17636864	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	17636864	17636864	G	T	SNP	VSNL1	NM_003385	human	genbank	54_36p	1	reviewed	missense	c.42	p.E14D	1	superfamily_EF-hand	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
GEN1	348654	broad.mit.edu	36	2	17806287	17806287	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	17806287	17806287	C	G	SNP	GEN1	NM_182625	human	genbank	54_36p	1	validated	missense	c.305	p.S102C	0.17	superfamily_PIN domain-like	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,HMMSmart_SM00484,HMMPfam_XPG_I,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
GEN1	348654	broad.mit.edu	36	2	17826623	17826623	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	17826623	17826623	G	C	SNP	GEN1	NM_182625	human	genbank	54_36p	1	validated	missense	c.2663	p.G888A	0	NULL	"HMMPfam_XPG_N,HMMSmart_SM00485,HMMPfam_XPG_I,HMMSmart_SM00484,HMMSmart_SM00279,superfamily_5' to 3' exonuclease C-terminal subdomain,superfamily_PIN domain-like"	-	no_errors
KCNS3	3790	broad.mit.edu	36	2	17976252	17976252	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	17976252	17976252	C	G	SNP	KCNS3	NM_002252	human	genbank	54_36p	1	reviewed	missense	c.496	p.Q166E	0.98	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNS3	3790	broad.mit.edu	36	2	17976259	17976259	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	17976259	17976259	G	A	SNP	KCNS3	NM_002252	human	genbank	54_36p	1	reviewed	missense	c.503	p.R168Q	1	NULL	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
KCNS3	3790	broad.mit.edu	36	2	17976889	17976889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	17976889	17976889	C	T	SNP	KCNS3	NM_002252	human	genbank	54_36p	1	reviewed	missense	c.1133	p.P378L	0.99	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
OSR1	130497	broad.mit.edu	36	2	19415536	19415536	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	19415536	19415536	G	T	SNP	OSR1	NM_145260	human	genbank	54_36p	-1	validated	missense	c.782	p.T261N	1	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
WDR35	57539	broad.mit.edu	36	2	19977517	19977517	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	19977517	19977517	G	C	SNP	WDR35	NM_001006657	human	genbank	54_36p	-1	reviewed	missense	c.3157	p.L1053V	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
LAPTM4A	9741	broad.mit.edu	36	2	20104232	20104232	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	20104232	20104232	T	G	SNP	LAPTM4A	NM_014713	human	genbank	54_36p	-1	reviewed	missense	c.133	p.I45L	1	HMMPfam_Mtp	HMMPfam_Mtp	-	no_errors
SDC1	6382	broad.mit.edu	36	2	20267222	20267222	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	20267222	20267222	G	A	SNP	SDC1	NM_001006946	human	genbank	54_36p	-1	reviewed	missense	c.460	p.H154Y	0.03	HMMPfam_Syndecan	"HMMPfam_Syndecan,HMMSmart_4.1m,PatternScan_SYNDECAN"	-	no_errors
APOB	338	broad.mit.edu	36	2	21078462	21078462	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	21078462	21078462	C	G	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.13337	p.R4446T	0	NULL	"superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081"	-	no_errors
APOB	338	broad.mit.edu	36	2	21079001	21079001	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	21079001	21079001	G	C	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.12798	p.I4266M	0	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	broad.mit.edu	36	2	21079460	21079484	+	Frame_Shift_Del	DEL	CTCAGCATTGTTCTGCAGATTTCTT	-	CTCAGCATTGTTCTGCAGATTTCTT	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	CTCAGCATTGTTCTGCAGATTTCTT	CTCAGCATTGTTCTGCAGATTTCTT	-	-	CTCAGCATTGTTCTGCAGATTTCTT	CTCAGCATTGTTCTGCAGATTTCTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	21079460	21079484	CTCAGCATTGTTCTGCAGATTTCTT	-	DEL	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.12339_12315	p.R4105fs	0.000:0.145:0.175:0.170:0.157:0.130:0.003:0.000:0.001:0.000:0.000:0.000:0.005:0.013:0.007:0.001:0.015:0.009:0.005:0.008:0.020:0.020:0.017:0.013:0.012	NULL	"superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081"	"(deletion:cds_exon[21078107,21079711])"	no_errors
APOB	338	broad.mit.edu	36	2	21079652	21079652	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	21079652	21079652	A	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.12147	p.D4049E	0.09	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	broad.mit.edu	36	2	21083983	21083983	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	21083983	21083983	G	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.9262	p.Q3088K	0.87	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	broad.mit.edu	36	2	21084376	21084376	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	21084376	21084376	A	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.8869	p.F2957I	0	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	broad.mit.edu	36	2	21088287	21088287	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	21088287	21088287	G	T	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.4958	p.S1653Y	0.8	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	broad.mit.edu	36	2	21088990	21088990	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	21088990	21088990	T	C	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.4255	p.T1419A	0.29	NULL	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
APOB	338	broad.mit.edu	36	2	21095401	21095401	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	21095401	21095401	A	C	SNP	APOB	NM_000384	human	genbank	54_36p	-1	reviewed	missense	c.3089	p.V1030G	1	HMMPfam_DUF1081	"HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain"	-	no_errors
ITSN2	50618	broad.mit.edu	36	2	24378344	24378344	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	24378344	24378344	G	C	SNP	ITSN2	NM_006277	human	genbank	54_36p	-1	reviewed	missense	c.986	p.S329C	0.98	"superfamily_EF-hand,HMMSmart_SM00027"	###############################################################################################################################################################################################################################################################	-	no_errors
NCOA1	8648	broad.mit.edu	36	2	24759360	24759360	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	24759360	24759360	G	T	SNP	NCOA1	NM_003743	human	genbank	54_36p	1	reviewed	missense	c.391	p.G131W	1	"HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)"	###############################################################################################################################################################################################################################################################	-	no_errors
CENPO	79172	broad.mit.edu	36	2	24876153	24876153	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	24876153	24876153	A	T	SNP	CENPO	NM_024322	human	genbank	54_36p	1	provisional	missense	c.152	p.K51M	0.02	NULL	HMMPfam_Cenp-O	-	no_errors
ADCY3	109	broad.mit.edu	36	2	24995288	24995288	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Broad454			Illumina GAIIx	2	24995288	24995288	G	A	SNP	ADCY3	NM_004036	human	genbank	54_36p	-1	reviewed	missense	c.73	p.P25S	1	NULL	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
POMC	5443	broad.mit.edu	36	2	25241012	25241012	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	25241012	25241012	A	C	SNP	POMC	NM_000939	human	genbank	54_36p	-1	reviewed	splice_site	c.132+2	e1+2	1	-	-	-	no_errors
DTNB	1838	broad.mit.edu	36	2	25531778	25531778	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	25531778	25531778	C	T	SNP	DTNB	NM_021907	human	genbank	54_36p	-1	reviewed	missense	c.1169	p.R390H	1	NULL	"superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
KIF3C	3797	broad.mit.edu	36	2	26030759	26030759	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26030759	26030759	C	T	SNP	KIF3C	NM_002254	human	genbank	54_36p	-1	validated	splice_site	c.1771-1	e4-1	1	-	-	-	no_errors
KIF3C	3797	broad.mit.edu	36	2	26056956	26056956	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26056956	26056956	G	T	SNP	KIF3C	NM_002254	human	genbank	54_36p	-1	validated	silent	c.1335	p.P445	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_RIBOSOMAL_L2,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
KIF3C	3797	broad.mit.edu	36	2	26057982	26057982	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	26057982	26057982	C	T	SNP	KIF3C	NM_002254	human	genbank	54_36p	-1	validated	silent	c.309	p.K103	1	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_RIBOSOMAL_L2,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RAB10	10890	broad.mit.edu	36	2	26203562	26203562	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26203562	26203562	G	A	SNP	RAB10	NM_016131	human	genbank	54_36p	1	provisional	missense	c.373	p.D125N	1	"HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
HADHA	3030	broad.mit.edu	36	2	26277614	26277614	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26277614	26277614	C	G	SNP	HADHA	NM_000182	human	genbank	54_36p	-1	reviewed	missense	c.1300	p.D434H	0.99	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3HCDH_N"	"superfamily_ClpP/crotonase,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH"	-	no_errors
GPR113	165082	broad.mit.edu	36	2	26387192	26387192	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26387192	26387192	C	G	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	missense	c.2311	p.G771R	0.18	HMMPfam_7tm_2	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR113	165082	broad.mit.edu	36	2	26387670	26387670	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26387670	26387670	G	A	SNP	GPR113	NM_153835	human	genbank	54_36p	-1	validated	silent	c.1833	p.A611	0	NULL	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
C2orf39	92749	broad.mit.edu	36	2	26500757	26500757	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26500757	26500757	C	T	SNP	C2orf39	NM_145038	human	genbank	54_36p	1	validated	silent	c.471	p.L157	0.48	NULL	NULL	-	no_errors
OTOF	9381	broad.mit.edu	36	2	26540401	26540401	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	26540401	26540401	G	A	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.5038	p.R1680C	1	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB"	-	no_errors
OTOF	9381	broad.mit.edu	36	2	26558931	26558931	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	26558931	26558931	G	A	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.1426	p.P476S	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
CIB4	130106	broad.mit.edu	36	2	26671623	26671623	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	26671623	26671623	C	T	SNP	CIB4	NM_001029881	human	genbank	54_36p	-1	provisional	missense	c.253	p.V85M	1	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
C2orf18	54978	broad.mit.edu	36	2	26854537	26854537	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	26854537	26854537	G	T	SNP	C2orf18	NM_017877	human	genbank	54_36p	1	validated	missense	c.770	p.G257V	1	NULL	"superfamily_SSF103481,HMMPfam_DUF6"	-	no_errors
DPYSL5	56896	broad.mit.edu	36	2	27003805	27003805	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27003805	27003805	G	A	SNP	DPYSL5	NM_020134	human	genbank	54_36p	1	validated	splice_site	c.600+1	e3+1	1	-	-	-	no_errors
DPYSL5	56896	broad.mit.edu	36	2	27018981	27018981	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27018981	27018981	C	G	SNP	DPYSL5	NM_020134	human	genbank	54_36p	1	validated	missense	c.1299	p.H433Q	1	superfamily_Metalo_hydrolase	"superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556"	-	no_errors
MAPRE3	22924	broad.mit.edu	36	2	27102380	27102380	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	27102380	27102380	C	T	SNP	MAPRE3	NM_012326	human	genbank	54_36p	1	reviewed	silent	c.753	p.I251	0.99	HMMPfam_EB1	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMPfam_EB1"	-	no_errors
AGBL5	60509	broad.mit.edu	36	2	27135678	27135678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27135678	27135678	C	T	SNP	AGBL5	NM_021831	human	genbank	54_36p	1	validated	missense	c.1991	p.S664F	1	NULL	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	-	no_errors
AGBL5	60509	broad.mit.edu	36	2	27145060	27145060	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	27145060	27145060	G	T	SNP	AGBL5	NM_021831	human	genbank	54_36p	1	validated	missense	c.2299	p.G767W	1	NULL	"HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases"	-	no_errors
EMILIN1	11117	broad.mit.edu	36	2	27158743	27158743	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	27158743	27158743	G	A	SNP	EMILIN1	NM_007046	human	genbank	54_36p	1	validated	missense	c.800	p.G267D	0.02	NULL	"HMMPfam_EMI,HMMPfam_Collagen,superfamily_TNF_like,HMMPfam_C1q"	-	no_errors
EMILIN1	11117	broad.mit.edu	36	2	27160227	27160227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	27160227	27160227	C	A	SNP	EMILIN1	NM_007046	human	genbank	54_36p	1	validated	missense	c.2284	p.L762I	0.3	NULL	"HMMPfam_C1q,HMMPfam_Collagen,superfamily_TNF_like,HMMPfam_EMI"	-	no_errors
CGREF1	10669	broad.mit.edu	36	2	27178469	27178469	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27178469	27178469	C	T	SNP	CGREF1	NM_006569	human	genbank	54_36p	-1	validated	silent	c.342	p.P114	0.88	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1"	-	no_errors
C2orf53	339779	broad.mit.edu	36	2	27213657	27213657	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	27213657	27213657	G	C	SNP	C2orf53	NM_178553	human	genbank	54_36p	-1	validated	missense	c.1045	p.P349A	0.03	NULL	NULL	-	no_errors
SLC5A6	8884	broad.mit.edu	36	2	27277434	27277434	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27277434	27277434	G	A	SNP	SLC5A6	NM_021095	human	genbank	54_36p	-1	provisional	missense	c.1700	p.P567L	0.61	NULL	"PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1"	-	no_errors
SLC5A6	8884	broad.mit.edu	36	2	27279631	27279631	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27279631	27279631	C	G	SNP	SLC5A6	NM_021095	human	genbank	54_36p	-1	provisional	missense	c.1181	p.R394P	0.88	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
TRIM54	57159	broad.mit.edu	36	2	27374970	27374970	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	27374970	27374970	C	G	SNP	TRIM54	NM_032546	human	genbank	54_36p	1	reviewed	missense	c.200	p.S67C	1	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX"	-	no_errors
GTF3C2	2976	broad.mit.edu	36	2	27405843	27405843	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27405843	27405843	C	T	SNP	GTF3C2	NM_001035521	human	genbank	54_36p	-1	validated	missense	c.1784	p.R595Q	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
ZNF513	130557	broad.mit.edu	36	2	27454395	27454395	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27454395	27454395	T	A	SNP	ZNF513	NM_144631	human	genbank	54_36p	-1	validated	missense	c.1147	p.S383C	1	superfamily_C2H2 and C2HC zinc fingers	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF513	130557	broad.mit.edu	36	2	27454507	27454507	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	27454507	27454507	T	C	SNP	ZNF513	NM_144631	human	genbank	54_36p	-1	validated	silent	c.1035	p.G345	0.99	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
C2orf16	84226	broad.mit.edu	36	2	27656561	27656561	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	27656561	27656561	A	G	SNP	C2orf16	NM_032266	human	genbank	54_36p	1	validated	silent	c.3618	p.Q1206	0	NULL	NULL	-	no_errors
C2orf16	84226	broad.mit.edu	36	2	27658063	27658086	+	In_Frame_Del	DEL	AGAGAAGACATCACAGTCCCTCTA	-	AGAGAAGACATCACAGTCCCTCTA	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	AGAGAAGACATCACAGTCCCTCTA	AGAGAAGACATCACAGTCCCTCTA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	27658063	27658086	AGAGAAGACATCACAGTCCCTCTA	-	DEL	C2orf16	NM_032266	human	genbank	54_36p	1	validated	in_frame_del	c.5120_5143	p.RHHSPSKR1709in_frame_del	0.000:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.000	NULL	NULL	"(deletion:cds_exon[27652944,27658898])"	no_errors
PLB1	151056	broad.mit.edu	36	2	28625255	28625255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	28625255	28625255	G	A	SNP	PLB1	NM_153021	human	genbank	54_36p	1	validated	missense	c.961	p.E321K	0.05	NULL	"superfamily_SGNH hydrolase,PatternScan_LIPASE_GDSL_SER,HMMPfam_Lipase_GDSL"	-	no_errors
PLB1	151056	broad.mit.edu	36	2	28654515	28654515	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	28654515	28654515	A	G	SNP	PLB1	NM_153021	human	genbank	54_36p	1	validated	missense	c.1471	p.M491V	1	"HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase"	"HMMPfam_Lipase_GDSL,PatternScan_LIPASE_GDSL_SER,superfamily_SGNH hydrolase"	-	no_errors
PLB1	151056	broad.mit.edu	36	2	28668118	28668118	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	28668118	28668118	G	C	SNP	PLB1	NM_153021	human	genbank	54_36p	1	validated	missense	c.2175	p.L725F	0	NULL	"HMMPfam_Lipase_GDSL,PatternScan_LIPASE_GDSL_SER,superfamily_SGNH hydrolase"	-	no_errors
PLB1	151056	broad.mit.edu	36	2	28678331	28678331	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	28678331	28678331	G	T	SNP	PLB1	NM_153021	human	genbank	54_36p	1	validated	missense	c.2669	p.R890I	0.03	"HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase"	"HMMPfam_Lipase_GDSL,PatternScan_LIPASE_GDSL_SER,superfamily_SGNH hydrolase"	-	no_errors
SPDYA	245711	broad.mit.edu	36	2	28892510	28892510	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	28892510	28892510	T	G	SNP	SPDYA	NM_182756	human	genbank	54_36p	1	validated	missense	c.126	p.N42K	1	NULL	NULL	-	no_errors
FAM179A	165186	broad.mit.edu	36	2	29074585	29074585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	29074585	29074585	C	T	SNP	FAM179A	NM_199280	human	genbank	54_36p	1	validated	missense	c.101	p.P34L	0.02	NULL	superfamily_ARM repeat	-	no_errors
FAM179A	165186	broad.mit.edu	36	2	29093546	29093546	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	29093546	29093546	C	A	SNP	FAM179A	NM_199280	human	genbank	54_36p	1	validated	missense	c.1067	p.S356Y	1	NULL	superfamily_ARM repeat	-	no_errors
C2orf71	388939	broad.mit.edu	36	2	29149792	29149792	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	29149792	29149792	C	A	SNP	C2orf71	NM_001029883	human	genbank	54_36p	-1	predicted	silent	c.840	p.V280	0	NULL	NULL	-	no_errors
ALK	238	broad.mit.edu	36	2	29299735	29299735	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	29299735	29299735	C	T	SNP	ALK	NM_004304	human	genbank	54_36p	-1	reviewed	silent	c.3336	p.P1112	0.04	superfamily_Protein kinase-like (PK-like)	"superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_MAM,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
ALK	238	broad.mit.edu	36	2	29996838	29996838	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	29996838	29996838	G	T	SNP	ALK	NM_004304	human	genbank	54_36p	-1	reviewed	missense	c.192	p.F64L	1	NULL	"HMMPfam_MAM,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00192,superfamily_LDL receptor-like module,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
LCLAT1	253558	broad.mit.edu	36	2	30536005	30536005	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	30536005	30536005	T	C	SNP	LCLAT1	NM_182551	human	genbank	54_36p	1	validated	missense	c.23	p.I8T	0.01	NULL	"superfamily_Glycerol-3-phosphate (1)-acyltransferase,HMMPfam_Acyltransferase,HMMSmart_SM00563"	-	no_errors
CAPN13	92291	broad.mit.edu	36	2	30846817	30846817	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	30846817	30846817	G	C	SNP	CAPN13	NM_144575	human	genbank	54_36p	-1	validated	missense	c.390	p.F130L	1	"superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2"	"superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand"	-	no_errors
GALNT14	79623	broad.mit.edu	36	2	31042594	31042594	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	31042594	31042594	C	T	SNP	GALNT14	NM_024572	human	genbank	54_36p	-1	validated	silent	c.378	p.T126	0.99	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458"	-	no_errors
EHD3	30845	broad.mit.edu	36	2	31337004	31337004	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	31337004	31337004	C	A	SNP	EHD3	NM_014600	human	genbank	54_36p	1	provisional	missense	c.627	p.N209K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1"	-	no_errors
SRD5A2	6716	broad.mit.edu	36	2	31612317	31612317	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	31612317	31612317	T	C	SNP	SRD5A2	ENST00000233139	human	ensembl	54_36p	-1	known	missense	c.302	p.N101S	1	NULL	HMMPfam_Steroid_dh	-	no_errors
MEMO1	7795	broad.mit.edu	36	2	31996505	31996505	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	31996505	31996505	A	T	SNP	MEMO1	NM_015955	human	genbank	54_36p	-1	validated	missense	c.431	p.M144K	1	HMMPfam_Memo	HMMPfam_Memo	-	no_errors
NLRC4	58484	broad.mit.edu	36	2	32331086	32331086	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	32331086	32331086	G	T	SNP	NLRC4	NM_021209	human	genbank	54_36p	-1	validated	missense	c.168	p.H56Q	0.07	"HMMPfam_CARD,superfamily_DEATH domain"	"HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like"	-	no_errors
BIRC6	57448	broad.mit.edu	36	2	32470676	32470676	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	32470676	32470676	G	C	SNP	BIRC6	NM_016252	human	genbank	54_36p	1	reviewed	missense	c.905	p.R302T	1	"superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR"	"superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con"	-	no_errors
BIRC6	57448	broad.mit.edu	36	2	32493924	32493924	+	Nonsense_Mutation	SNP	C	C	G	rs3769599	"by-cluster,by-frequency,by-hapmap"	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	32493924	32493924	C	G	SNP	BIRC6	NM_016252	human	genbank	54_36p	1	reviewed	nonsense	c.2061	p.Y687*	1	NULL	"HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat"	-	no_errors
BIRC6	57448	broad.mit.edu	36	2	32541905	32541905	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	32541905	32541905	A	C	SNP	BIRC6	NM_016252	human	genbank	54_36p	1	reviewed	silent	c.4893	p.L1631	0.92	NULL	"HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat"	-	no_errors
BIRC6	57448	broad.mit.edu	36	2	32543691	32543691	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	32543691	32543691	C	G	SNP	BIRC6	NM_016252	human	genbank	54_36p	1	reviewed	missense	c.5311	p.Q1771E	1	NULL	"HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat"	-	no_errors
BIRC6	57448	broad.mit.edu	36	2	32624379	32624379	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	32624379	32624379	C	T	SNP	BIRC6	NM_016252	human	genbank	54_36p	1	reviewed	missense	c.12758	p.A4253V	1	NULL	"HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat"	-	no_errors
LTBP1	4052	broad.mit.edu	36	2	33353618	33353618	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	33353618	33353618	C	T	SNP	LTBP1	NM_206943	human	genbank	54_36p	1	reviewed	silent	c.2829	p.C943	1	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
LTBP1	4052	broad.mit.edu	36	2	33444027	33444027	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	33444027	33444027	G	A	SNP	LTBP1	NM_206943	human	genbank	54_36p	1	reviewed	missense	c.4667	p.G1556E	1	"HMMPfam_TB,superfamily_TB module/8-cys domain"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
RASGRP3	25780	broad.mit.edu	36	2	33605748	33605748	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	33605748	33605748	A	G	SNP	RASGRP3	NM_170672	human	genbank	54_36p	1	validated	missense	c.848	p.N283S	1	"superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147"	"HMMSmart_SM00229,superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	-	no_errors
RASGRP3	25780	broad.mit.edu	36	2	33622158	33622158	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	33622158	33622158	T	C	SNP	RASGRP3	NM_170672	human	genbank	54_36p	1	validated	missense	c.1354	p.F452L	1	"HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand"	"HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_RasGEF,HMMSmart_SM00147,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Ras GEF,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain"	-	no_errors
HEATR5B	54497	broad.mit.edu	36	2	37081236	37081236	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	37081236	37081236	G	T	SNP	HEATR5B	NM_019024	human	genbank	54_36p	-1	validated	missense	c.5542	p.P1848T	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
HEATR5B	54497	broad.mit.edu	36	2	37084228	37084228	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	37084228	37084228	C	T	SNP	HEATR5B	NM_019024	human	genbank	54_36p	-1	validated	missense	c.5011	p.A1671T	1	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
HEATR5B	54497	broad.mit.edu	36	2	37108713	37108713	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	37108713	37108713	G	T	SNP	HEATR5B	NM_019024	human	genbank	54_36p	-1	validated	nonsense	c.3710	p.S1237*	1	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
EIF2AK2	5610	broad.mit.edu	36	2	37195473	37195473	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	37195473	37195473	C	T	SNP	EIF2AK2	NM_002759	human	genbank	54_36p	-1	validated	missense	c.1282	p.V428I	0.37	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220"	"HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SULT6B1	391365	broad.mit.edu	36	2	37269169	37269169	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	37269169	37269169	C	T	SNP	SULT6B1	NM_001032377	human	genbank	54_36p	-1	provisional	missense	c.5	p.C2Y	0.94	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
C2orf56	55471	broad.mit.edu	36	2	37326751	37326751	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	37326751	37326751	T	C	SNP	C2orf56	NM_144736	human	genbank	54_36p	1	validated	missense	c.845	p.I282T	0.41	HMMPfam_DUF185	HMMPfam_DUF185	-	no_errors
PRKD3	23683	broad.mit.edu	36	2	37363257	37363257	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	37363257	37363257	A	G	SNP	PRKD3	NM_005813	human	genbank	54_36p	-1	reviewed	missense	c.920	p.F307S	1	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	###############################################################################################################################################################################################################################################################	-	no_errors
FAM82A1	151393	broad.mit.edu	36	2	38032579	38032579	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	38032579	38032579	C	A	SNP	FAM82A1	NM_144713	human	genbank	54_36p	1	provisional	silent	c.717	p.G239	0.03	NULL	"superfamily_SSF48452,PatternScan_ER_TARGET"	-	no_errors
SOS1	6654	broad.mit.edu	36	2	39066923	39066923	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	39066923	39066923	G	C	SNP	SOS1	NM_005633	human	genbank	54_36p	-1	reviewed	missense	c.3548	p.P1183R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MAP4K3	8491	broad.mit.edu	36	2	39406867	39406867	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	39406867	39406867	C	T	SNP	MAP4K3	NM_003618	human	genbank	54_36p	-1	reviewed	missense	c.586	p.D196N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
MAP4K3	8491	broad.mit.edu	36	2	39517539	39517539	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	39517539	39517539	T	C	SNP	MAP4K3	NM_003618	human	genbank	54_36p	-1	reviewed	missense	c.94	p.K32E	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
MTA3	57504	broad.mit.edu	36	2	42776439	42776439	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	42776439	42776439	G	C	SNP	MTA3	NM_020744	human	genbank	54_36p	1	provisional	missense	c.922	p.E308Q	1	"HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain_like"	"HMMPfam_BAH,HMMSmart_BAH,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain_like,HMMSmart_ZnF_GATA,HMMPfam_GATA"	-	no_errors
ABCG5	64240	broad.mit.edu	36	2	43904698	43904698	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	43904698	43904698	C	A	SNP	ABCG5	NM_022436	human	genbank	54_36p	-1	reviewed	silent	c.1182	p.L394	0.99	HMMPfam_ABC2_membrane	"PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,HMMPfam_ABC2_membrane"	-	no_errors
LRPPRC	10128	broad.mit.edu	36	2	44024521	44024521	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	44024521	44024521	C	T	SNP	LRPPRC	NM_133259	human	genbank	54_36p	-1	reviewed	silent	c.2313	p.L771	1	"superfamily_SSF48452,HMMPfam_PPR"	"superfamily_SSF48452,HMMPfam_PPR"	-	no_errors
PRKCE	5581	broad.mit.edu	36	2	46082066	46082066	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	46082066	46082066	C	T	SNP	PRKCE	NM_005400	human	genbank	54_36p	1	reviewed	silent	c.843	p.H281	1	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	###############################################################################################################################################################################################################################################################	-	no_errors
EPAS1	2034	broad.mit.edu	36	2	46436791	46436792	+	Splice_Site	DNP	CA	CA	AT	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	46436791	46436792	CA	AT	DNP	EPAS1	NM_001430	human	genbank	54_36p	1	validated	splice_site	c.218-3_218-2	e3-2	0.952:0.996	-	-	-	no_errors
EPAS1	2034	broad.mit.edu	36	2	46459304	46459304	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	46459304	46459304	A	G	SNP	EPAS1	NM_001430	human	genbank	54_36p	1	validated	missense	c.1448	p.N483S	1	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_HIF-1a_CTAD"	-	no_errors
EPAS1	2034	broad.mit.edu	36	2	46465164	46465165	+	Missense_Mutation	DNP	GG	GG	CC	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	46465164	46465165	GG	CC	DNP	EPAS1	NM_001430	human	genbank	54_36p	1	validated	missense	c.2474_2475	p.R825P	1.000:1.000	NULL	"HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,superfamily_HLH_basic,HMMPfam_PAS_3,HMMPfam_HIF-1a_CTAD,superfamily_SSF55785"	-	no_errors
ATP6V1E2	90423	broad.mit.edu	36	2	46592951	46592951	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	46592951	46592951	C	T	SNP	ATP6V1E2	NM_080653	human	genbank	54_36p	-1	validated	missense	c.404	p.R135H	1	HMMPfam_vATP-synt_E	HMMPfam_vATP-synt_E	-	no_errors
SOCS5	9655	broad.mit.edu	36	2	46839758	46839758	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	46839758	46839758	C	T	SNP	SOCS5	NM_014011	human	genbank	54_36p	1	reviewed	silent	c.585	p.S195	1	NULL	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00253,HMMPfam_SOCS_box"	-	no_errors
MSH2	4436	broad.mit.edu	36	2	47558954	47558954	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	47558954	47558954	G	-	DEL	MSH2	NM_000251	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2250	p.G751fs	1	"HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2"	"HMMPfam_MutS_I,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2"	"(deletion:cds_exon[47558915,47559162])"	no_errors
KCNK12	56660	broad.mit.edu	36	2	47602342	47602342	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	47602342	47602342	G	A	SNP	KCNK12	NM_022055	human	genbank	54_36p	-1	reviewed	silent	c.501	p.R167	1	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	-	no_errors
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48727389	48727389	+	Missense_Mutation	SNP	G	G	A	rs61754876	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	48727389	48727389	G	A	SNP	STON1-GTF2A1L	NM_172311	human	genbank	54_36p	1	reviewed	missense	c.2794	p.V932M	0	HMMPfam_TFIIA	"superfamily_AP50,HMMPfam_Adap_comp_sub,superfamily_TFIIA_helical,HMMPfam_TFIIA,superfamily_TFIIA_betabarrel"	-	no_errors
LHCGR	3973	broad.mit.edu	36	2	48768695	48768695	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	48768695	48768695	A	G	SNP	LHCGR	NM_000233	human	genbank	54_36p	-1	reviewed	missense	c.1745	p.M582T	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FSHR	2492	broad.mit.edu	36	2	49043797	49043797	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	49043797	49043797	A	T	SNP	FSHR	NM_000145	human	genbank	54_36p	-1	reviewed	missense	c.1667	p.V556E	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FSHR	2492	broad.mit.edu	36	2	49044418	49044418	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	49044418	49044418	T	A	SNP	FSHR	NM_000145	human	genbank	54_36p	-1	reviewed	missense	c.1046	p.K349M	0.93	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
NRXN1	9378	broad.mit.edu	36	2	50553080	50553080	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	50553080	50553080	G	A	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	missense	c.3104	p.T1035I	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_SM00294"	-	no_errors
NRXN1	9378	broad.mit.edu	36	2	50611918	50611918	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	50611918	50611918	G	T	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	silent	c.2298	p.T766	0.96	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin"	-	no_errors
NRXN1	9378	broad.mit.edu	36	2	50619171	50619171	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	50619171	50619171	C	T	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	missense	c.1867	p.A623T	1	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin"	-	no_errors
ERLEC1	27248	broad.mit.edu	36	2	53888966	53888966	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	53888966	53888966	G	A	SNP	C2orf30	NM_015701	human	genbank	54_36p	1	validated	silent	c.906	p.E302	1	NULL	"HMMPfam_PRKCSH,superfamily_Mannose 6-phosphate receptor domain"	-	no_errors
RTN4	57142	broad.mit.edu	36	2	55106196	55106196	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	55106196	55106196	G	C	SNP	RTN4	NM_020532	human	genbank	54_36p	-1	reviewed	missense	c.2543	p.S848C	1	NULL	HMMPfam_Reticulon	-	no_errors
C2orf63	130162	broad.mit.edu	36	2	55293345	55293345	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	55293345	55293345	G	C	SNP	C2orf63	NM_152385	human	genbank	54_36p	-1	validated	missense	c.467	p.T156S	0	NULL	superfamily_ARM repeat	-	no_errors
RPS27A	6233	broad.mit.edu	36	2	55315594	55315594	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	55315594	55315594	T	C	SNP	RPS27A	NM_002954	human	genbank	54_36p	1	reviewed	missense	c.313	p.Y105H	1	HMMPfam_Ribosomal_S27	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1,HMMPfam_Ribosomal_S27"	-	no_errors
MTIF2	4528	broad.mit.edu	36	2	55327035	55327035	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	55327035	55327035	C	A	SNP	MTIF2	NM_001005369	human	genbank	54_36p	-1	reviewed	missense	c.1048	p.D350Y	1	superfamily_SSF52540	"superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_SSF52156,PatternScan_IF2"	-	no_errors
CCDC104	112942	broad.mit.edu	36	2	55609605	55609605	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	55609605	55609605	G	T	SNP	CCDC104	NM_080667	human	genbank	54_36p	1	validated	missense	c.370	p.A124S	1	NULL	NULL	-	no_errors
CCDC85A	114800	broad.mit.edu	36	2	56453098	56453098	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	56453098	56453098	G	A	SNP	CCDC85A	NM_001080433	human	genbank	54_36p	1	provisional	missense	c.1433	p.R478Q	1	NULL	HMMPfam_DUF2216	-	no_errors
VRK2	7444	broad.mit.edu	36	2	58129502	58129502	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	58129502	58129502	T	A	SNP	VRK2	NM_006296	human	genbank	54_36p	1	reviewed	missense	c.32	p.L11H	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
FANCL	55120	broad.mit.edu	36	2	58240432	58240432	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	58240432	58240432	G	A	SNP	FANCL	NM_018062	human	genbank	54_36p	-1	reviewed	missense	c.1100	p.T367I	1	HMMPfam_WD-3	"PatternScan_ZF_RING_1,HMMPfam_WD-3,superfamily_SSF57850,HMMSmart_RING"	-	no_errors
FANCL	55120	broad.mit.edu	36	2	58302626	58302626	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	58302626	58302626	A	G	SNP	FANCL	NM_018062	human	genbank	54_36p	-1	reviewed	missense	c.329	p.F110S	1	HMMPfam_WD-3	"HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_WD-3,superfamily_SSF57850"	-	no_errors
PAPOLG	64895	broad.mit.edu	36	2	60852164	60852164	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	60852164	60852164	C	G	SNP	PAPOLG	NM_022894	human	genbank	54_36p	1	reviewed	missense	c.499	p.L167V	1	"HMMPfam_PAP_central,superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2"	"HMMPfam_PAP_central,superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2,superfamily_PAP/OAS1 substrate-binding domain,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain,HMMPfam_PAP_RNA-bind"	-	no_errors
PUS10	150962	broad.mit.edu	36	2	61033722	61033722	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	61033722	61033722	C	A	SNP	PUS10	NM_144709	human	genbank	54_36p	-1	validated	nonsense	c.1222	p.E408*	1	NULL	NULL	-	no_errors
PUS10	150962	broad.mit.edu	36	2	61089571	61089571	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	61089571	61089571	T	G	SNP	PUS10	NM_144709	human	genbank	54_36p	-1	validated	missense	c.210	p.K70N	1	NULL	NULL	-	no_errors
USP34	9736	broad.mit.edu	36	2	61289609	61289609	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	61289609	61289609	T	C	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	missense	c.8848	p.R2950G	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP34	9736	broad.mit.edu	36	2	61346784	61346784	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	61346784	61346784	T	A	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	missense	c.5456	p.N1819I	1	NULL	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
USP34	9736	broad.mit.edu	36	2	61392182	61392182	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	61392182	61392182	G	A	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	missense	c.3814	p.P1272S	1	NULL	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
USP34	9736	broad.mit.edu	36	2	61460976	61460976	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	61460976	61460976	C	G	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	missense	c.846	p.Q282H	1	NULL	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
FAM161A	84140	broad.mit.edu	36	2	61920467	61920467	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	61920467	61920467	T	A	SNP	FAM161A	NM_032180	human	genbank	54_36p	-1	validated	missense	c.849	p.L283F	0.03	HMMPfam_UPF0564	HMMPfam_UPF0564	-	no_errors
FAM161A	84140	broad.mit.edu	36	2	61920764	61920764	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	61920764	61920764	G	C	SNP	FAM161A	NM_032180	human	genbank	54_36p	-1	validated	silent	c.552	p.L184	0.99	HMMPfam_UPF0564	HMMPfam_UPF0564	-	no_errors
FAM161A	84140	broad.mit.edu	36	2	61920995	61920995	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	61920995	61920995	A	C	SNP	FAM161A	NM_032180	human	genbank	54_36p	-1	validated	missense	c.321	p.D107E	0	NULL	HMMPfam_UPF0564	-	no_errors
FAM161A	84140	broad.mit.edu	36	2	61934636	61934636	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	61934636	61934636	G	A	SNP	FAM161A	ENST00000404929	human	ensembl	54_36p	-1	known	silent	c.45	p.L15	0.01	NULL	HMMPfam_UPF0564	-	no_errors
CCT4	10575	broad.mit.edu	36	2	61952835	61952835	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	61952835	61952835	C	A	SNP	CCT4	NM_006430	human	genbank	54_36p	-1	validated	missense	c.1377	p.E459D	1	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1"	"superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_SSF54849,superfamily_SSF52029"	-	no_errors
COMMD1	150684	broad.mit.edu	36	2	61986493	61986493	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	61986493	61986493	T	A	SNP	COMMD1	NM_152516	human	genbank	54_36p	1	validated	missense	c.176	p.L59H	1	HMMPfam_HCaRG	HMMPfam_HCaRG	-	no_errors
C2orf86	51057	broad.mit.edu	36	2	63485059	63485059	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	63485059	63485059	C	A	SNP	C2orf86	NM_015910	human	genbank	54_36p	-1	validated	missense	c.1063	p.G355C	1	NULL	NULL	-	no_errors
VPS54	51542	broad.mit.edu	36	2	64052843	64052843	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	64052843	64052843	G	T	SNP	VPS54	NM_016516	human	genbank	54_36p	-1	reviewed	missense	c.418	p.P140T	1	NULL	HMMPfam_Vps54	-	no_errors
AFTPH	54812	broad.mit.edu	36	2	64672626	64672626	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	64672626	64672626	G	A	SNP	AFTPH	NM_203437	human	genbank	54_36p	1	validated	missense	c.2764	p.A922T	1	NULL	PatternScan_EF_HAND_1	-	no_errors
SPRED2	200734	broad.mit.edu	36	2	65425505	65425505	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	65425505	65425505	A	T	SNP	SPRED2	NM_181784	human	genbank	54_36p	-1	validated	missense	c.56	p.V19E	1	"HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like"	"HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_Sprouty"	-	no_errors
ETAA1	54465	broad.mit.edu	36	2	67485207	67485207	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	67485207	67485207	G	C	SNP	ETAA1	NM_019002	human	genbank	54_36p	1	validated	missense	c.1889	p.S630T	0	NULL	NULL	-	no_errors
APLF	200558	broad.mit.edu	36	2	68618673	68618673	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	68618673	68618673	T	G	SNP	APLF	NM_173545	human	genbank	54_36p	1	validated	missense	c.970	p.C324G	0	NULL	"superfamily_SMAD_FHA,HMMPfam_zf-CCHH"	-	no_errors
BMP10	27302	broad.mit.edu	36	2	68946356	68946356	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	68946356	68946356	G	A	SNP	BMP10	NM_014482	human	genbank	54_36p	-1	reviewed	missense	c.1186	p.P396S	1	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB"	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
ANTXR1	84168	broad.mit.edu	36	2	69151305	69151305	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	69151305	69151305	G	C	SNP	ANTXR1	NM_032208	human	genbank	54_36p	1	reviewed	missense	c.319	p.E107Q	1	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Anth_Ig,HMMPfam_Ant_C"	-	no_errors
GMCL1	64395	broad.mit.edu	36	2	69930290	69930290	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	69930290	69930290	G	T	SNP	GMCL1	NM_178439	human	genbank	54_36p	1	provisional	missense	c.846	p.W282C	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
GMCL1	64395	broad.mit.edu	36	2	69935488	69935488	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	69935488	69935488	G	A	SNP	GMCL1	NM_178439	human	genbank	54_36p	1	provisional	missense	c.964	p.E322K	1	NULL	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	-	no_errors
ADD2	119	broad.mit.edu	36	2	70753936	70753936	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	70753936	70753936	C	G	SNP	ADD2	NM_017488	human	genbank	54_36p	-1	reviewed	missense	c.1772	p.G591A	0	NULL	"superfamily_Aldolase_II_N,HMMPfam_Aldolase_II"	-	no_errors
ADD2	119	broad.mit.edu	36	2	70759469	70759469	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	70759469	70759469	G	A	SNP	ADD2	NM_001617	human	genbank	54_36p	-1	reviewed	nonsense	c.1258	p.R420*	0.99	NULL	"superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II"	-	no_errors
ADD2	119	broad.mit.edu	36	2	70773175	70773175	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	70773175	70773175	C	T	SNP	ADD2	NM_001617	human	genbank	54_36p	-1	reviewed	silent	c.573	p.L191	1	"HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase"	"HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase"	-	no_errors
CLEC4F	165530	broad.mit.edu	36	2	70896853	70896853	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	70896853	70896853	T	C	SNP	CLEC4F	NM_173535	human	genbank	54_36p	-1	validated	missense	c.1168	p.I390V	0.4	NULL	"PatternScan_C_TYPE_LECTIN_1,superfamily_C-type_lectin_fold"	-	no_errors
CLEC4F	165530	broad.mit.edu	36	2	70897731	70897731	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	70897731	70897731	T	C	SNP	CLEC4F	NM_173535	human	genbank	54_36p	-1	validated	missense	c.290	p.E97G	0	NULL	"superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
CD207	50489	broad.mit.edu	36	2	70916385	70916385	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	70916385	70916385	C	T	SNP	CD207	NM_015717	human	genbank	54_36p	-1	validated	silent	c.30	p.A10	0.28	NULL	"HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
MPHOSPH10	10199	broad.mit.edu	36	2	71211344	71211344	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	71211344	71211344	G	C	SNP	MPHOSPH10	NM_005791	human	genbank	54_36p	1	reviewed	missense	c.41	p.C14S	0.89	NULL	HMMPfam_Mpp10	-	no_errors
DYSF	8291	broad.mit.edu	36	2	71615936	71615936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	71615936	71615936	C	T	SNP	DYSF	NM_003494	human	genbank	54_36p	1	reviewed	missense	c.1384	p.R462C	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694"	-	no_errors
DYSF	8291	broad.mit.edu	36	2	71739621	71739621	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	71739621	71739621	A	G	SNP	DYSF	NM_003494	human	genbank	54_36p	1	reviewed	missense	c.4744	p.I1582V	0.25	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
CYP26B1	56603	broad.mit.edu	36	2	72213210	72213211	+	Missense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	72213210	72213211	TC	AA	DNP	CYP26B1	NM_019885	human	genbank	54_36p	-1	reviewed	missense	c.1193_1192	p.D398F	1.000:1.000	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP26B1	56603	broad.mit.edu	36	2	72224762	72224762	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	72224762	72224762	C	A	SNP	CYP26B1	NM_019885	human	genbank	54_36p	-1	reviewed	missense	c.293	p.G98V	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
EXOC6B	23233	broad.mit.edu	36	2	72580564	72580564	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	72580564	72580564	T	A	SNP	EXOC6B	NM_015189	human	genbank	54_36p	-1	validated	missense	c.1213	p.I405F	1	NULL	HMMPfam_Sec15	-	no_errors
SPR	6697	broad.mit.edu	36	2	72972028	72972028	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	72972028	72972028	G	A	SNP	SPR	NM_003124	human	genbank	54_36p	1	reviewed	missense	c.640	p.V214M	0	superfamily_NAD(P)-bd	"superfamily_NAD(P)-bd,HMMPfam_adh_short"	-	no_errors
EGR4	1961	broad.mit.edu	36	2	73372938	73372938	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	73372938	73372938	C	T	SNP	EGR4	NM_001965	human	genbank	54_36p	-1	validated	missense	c.616	p.A206T	0.11	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ALMS1	7840	broad.mit.edu	36	2	73466540	73466545	+	In_Frame_Del	DEL	GGAGGA	-	GGAGGA	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	GGAGGA	GGAGGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	73466540	73466545	GGAGGA	-	DEL	ALMS1	NM_015120	human	genbank	54_36p	1	reviewed	in_frame_del	c.36_41	p.EE16in_frame_del	0.986:0.995:0.998:1.000:1.000:1.000	NULL	NULL	"(deletion:cds_exon[73466505,73466828])"	no_errors
ALMS1	7840	broad.mit.edu	36	2	73499950	73499950	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	73499950	73499950	G	T	SNP	ALMS1	NM_015120	human	genbank	54_36p	1	reviewed	silent	c.642	p.L214	1	NULL	NULL	-	no_errors
ALMS1	7840	broad.mit.edu	36	2	73530813	73530813	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	73530813	73530813	A	G	SNP	ALMS1	NM_015120	human	genbank	54_36p	1	reviewed	silent	c.3648	p.K1216	0	NULL	NULL	-	no_errors
NAT8	9027	broad.mit.edu	36	2	73721902	73721902	+	Missense_Mutation	SNP	A	A	T	rs62000430	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	73721902	73721902	A	T	SNP	NAT8	NM_003960	human	genbank	54_36p	-1	reviewed	missense	c.362	p.M121K	1	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1"	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1"	-	no_errors
NAT8B	51471	broad.mit.edu	36	2	73781447	73781447	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	73781447	73781447	G	A	SNP	ENSG00000204872	ENST00000377712	human	ensembl	54_36p	-1	novel	missense	c.422	p.A141V	1	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1"	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1"	-	no_errors
C2orf78	388960	broad.mit.edu	36	2	73896358	73896358	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	73896358	73896358	G	C	SNP	C2orf78	NM_001080474	human	genbank	54_36p	1	predicted	missense	c.1500	p.R500S	0.45	NULL	NULL	-	no_errors
STAMBP	10617	broad.mit.edu	36	2	73930019	73930019	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	73930019	73930019	G	A	SNP	STAMBP	NM_006463	human	genbank	54_36p	1	reviewed	missense	c.764	p.R255H	1	"HMMPfam_Mov34,superfamily_SSF102712"	"HMMPfam_Mov34,superfamily_SSF102712,HMMSmart_JAB_MPN"	-	no_errors
TET3	200424	broad.mit.edu	36	2	74128888	74128888	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	74128888	74128888	G	A	SNP	TET3	NM_144993	human	genbank	54_36p	1	provisional	missense	c.1931	p.G644E	0.34	NULL	NULL	-	no_errors
TET3	200424	broad.mit.edu	36	2	74182800	74182800	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74182800	74182800	C	T	SNP	TET3	NM_144993	human	genbank	54_36p	1	provisional	missense	c.4972	p.R1658C	1	NULL	NULL	-	no_errors
SLC4A5	57835	broad.mit.edu	36	2	74313134	74313134	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74313134	74313134	G	A	SNP	SLC4A5	NM_021196	human	genbank	54_36p	-1	reviewed	missense	c.2744	p.P915L	1	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC4A5	57835	broad.mit.edu	36	2	74332886	74332886	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74332886	74332886	C	A	SNP	SLC4A5	NM_021196	human	genbank	54_36p	-1	reviewed	missense	c.1406	p.G469V	0	NULL	"HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein"	-	no_errors
DCTN1	1639	broad.mit.edu	36	2	74446964	74446964	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74446964	74446964	G	C	SNP	DCTN1	NM_004082	human	genbank	54_36p	-1	reviewed	nonsense	c.2675	p.S892*	1	NULL	"superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Spectrin repeat"	-	no_errors
WBP1	23559	broad.mit.edu	36	2	74541197	74541198	+	Missense_Mutation	DNP	GT	GT	CC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	74541197	74541198	GT	CC	DNP	WBP1	NM_012477	human	genbank	54_36p	1	reviewed	missense	c.691_692	p.V231P	0.982:0.961	NULL	NULL	-	no_errors
PCGF1	84759	broad.mit.edu	36	2	74586392	74586392	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74586392	74586392	T	C	SNP	PCGF1	NM_032673	human	genbank	54_36p	-1	validated	missense	c.544	p.K182E	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
TLX2	3196	broad.mit.edu	36	2	74596361	74596361	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	74596361	74596361	C	G	SNP	TLX2	NM_016170	human	genbank	54_36p	1	provisional	missense	c.494	p.S165C	1	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HTRA2	27429	broad.mit.edu	36	2	74611552	74611552	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74611552	74611552	C	T	SNP	HTRA2	NM_013247	human	genbank	54_36p	1	reviewed	missense	c.718	p.L240F	1	"superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	-	no_errors
LOXL3	84695	broad.mit.edu	36	2	74617073	74617073	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	74617073	74617073	C	G	SNP	LOXL3	NM_032603	human	genbank	54_36p	-1	reviewed	missense	c.946	p.G316R	1	"superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1"	"superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE"	-	no_errors
C2orf65	130951	broad.mit.edu	36	2	74640855	74640855	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74640855	74640855	G	T	SNP	C2orf65	NM_138804	human	genbank	54_36p	-1	predicted	missense	c.1353	p.H451Q	1	NULL	NULL	-	no_errors
SEMA4F	10505	broad.mit.edu	36	2	74743412	74743412	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	74743412	74743412	G	A	SNP	SEMA4F	NM_004263	human	genbank	54_36p	1	provisional	missense	c.502	p.G168R	1	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat"	-	no_errors
TACR1	6869	broad.mit.edu	36	2	75130159	75130159	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	75130159	75130159	A	C	SNP	TACR1	NM_001058	human	genbank	54_36p	-1	reviewed	missense	c.1132	p.S378A	0.51	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LRRTM4	80059	broad.mit.edu	36	2	77599406	77599406	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	77599406	77599406	A	G	SNP	LRRTM4	NM_024993	human	genbank	54_36p	-1	provisional	missense	c.1097	p.V366A	0.11	NULL	"HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1"	-	no_errors
LRRTM4	80059	broad.mit.edu	36	2	77599824	77599824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	77599824	77599824	G	C	SNP	LRRTM4	NM_024993	human	genbank	54_36p	-1	provisional	missense	c.679	p.R227G	1	"HMMPfam_LRR_1,superfamily_SSF52058"	"HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
LRRTM1	347730	broad.mit.edu	36	2	80382909	80382909	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	80382909	80382909	G	T	SNP	LRRTM1	NM_178839	human	genbank	54_36p	-1	validated	missense	c.1547	p.P516H	1	NULL	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
LRRTM1	347730	broad.mit.edu	36	2	80383703	80383703	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	80383703	80383703	C	A	SNP	LRRTM1	NM_178839	human	genbank	54_36p	-1	validated	silent	c.753	p.S251	1	superfamily_SSF52058	"HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
KCMF1	56888	broad.mit.edu	36	2	85133839	85133839	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	85133839	85133839	A	C	SNP	KCMF1	NM_020122	human	genbank	54_36p	1	validated	silent	c.942	p.A314	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	-	no_errors
RETSAT	54884	broad.mit.edu	36	2	85431525	85431525	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	85431525	85431525	A	T	SNP	RETSAT	NM_017750	human	genbank	54_36p	-1	validated	missense	c.486	p.N162K	0.05	superfamily_FAD/NAD(P)-binding domain	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_2,PatternScan_RCC1_2"	-	no_errors
ELMOD3	84173	broad.mit.edu	36	2	85452122	85452122	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	85452122	85452122	T	A	SNP	ELMOD3	NM_032213	human	genbank	54_36p	1	validated	missense	c.533	p.I178N	1	HMMPfam_ELMO_CED12	HMMPfam_ELMO_CED12	-	no_errors
MAT2A	4144	broad.mit.edu	36	2	85623357	85623358	+	Silent	DNP	TC	TC	AT	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	85623357	85623358	TC	AT	DNP	MAT2A	NM_005911	human	genbank	54_36p	1	validated	silent	c.927_928	p.GGLC308	0.999:1.000	"HMMPfam_S-AdoMet_synt_C,superfamily_S-adenosylmethionine synthetase"	"HMMPfam_S-AdoMet_synt_N,superfamily_S-adenosylmethionine synthetase,HMMPfam_S-AdoMet_synt_M,PatternScan_ADOMET_SYNTHETASE_1,HMMPfam_S-AdoMet_synt_C,PatternScan_ADOMET_SYNTHETASE_2"	-	no_errors
POLR1A	25885	broad.mit.edu	36	2	86108550	86108550	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	86108550	86108550	G	A	SNP	POLR1A	NM_015425	human	genbank	54_36p	-1	validated	silent	c.5031	p.S1677	1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	"superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb1_1,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_2,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_4,HMMPfam_RNA_pol_Rpb1_5"	-	no_errors
POLR1A	25885	broad.mit.edu	36	2	86108586	86108586	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	86108586	86108586	G	A	SNP	POLR1A	NM_015425	human	genbank	54_36p	-1	validated	silent	c.4995	p.N1665	1	"HMMPfam_RNA_pol_Rpb1_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase"	"HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase"	-	no_errors
POLR1A	25885	broad.mit.edu	36	2	86111964	86111964	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	86111964	86111964	C	T	SNP	POLR1A	NM_015425	human	genbank	54_36p	-1	validated	silent	c.4578	p.Q1526	1	"HMMPfam_RNA_pol_Rpb1_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase"	"HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase"	-	no_errors
PTCD3	55037	broad.mit.edu	36	2	86205641	86205641	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	86205641	86205641	C	T	SNP	PTCD3	NM_017952	human	genbank	54_36p	1	validated	silent	c.729	p.N243	1	NULL	HMMPfam_PPR	-	no_errors
CD8A	925	broad.mit.edu	36	2	86871055	86871055	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	86871055	86871055	C	T	SNP	CD8A	NM_001768	human	genbank	54_36p	-1	reviewed	missense	c.310	p.D104N	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_errors
EIF2AK3	9451	broad.mit.edu	36	2	88671522	88671522	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	88671522	88671522	T	G	SNP	EIF2AK3	NM_004836	human	genbank	54_36p	-1	validated	missense	c.931	p.K311Q	1	superfamily_Quinoprotein alcohol dehydrogenase-like	"superfamily_Quinoprotein alcohol dehydrogenase-like,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
EIF2AK3	9451	broad.mit.edu	36	2	88671555	88671555	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	88671555	88671555	C	G	SNP	EIF2AK3	NM_004836	human	genbank	54_36p	-1	validated	missense	c.898	p.E300Q	1	superfamily_Quinoprotein alcohol dehydrogenase-like	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
TEKT4	150483	broad.mit.edu	36	2	94903503	94903503	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	94903503	94903503	C	A	SNP	TEKT4	NM_144705	human	genbank	54_36p	1	provisional	silent	c.636	p.I212	0.99	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
MRPS5	64969	broad.mit.edu	36	2	95129978	95129978	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	95129978	95129978	C	T	SNP	MRPS5	NM_031902	human	genbank	54_36p	-1	reviewed	missense	c.899	p.R300K	1	"superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_Ribosomal_S5_C"	"superfamily_dsRNA-binding domain-like,HMMPfam_Ribosomal_S5,PatternScan_RIBOSOMAL_S5,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_Ribosomal_S5_C"	-	no_errors
PROM2	150696	broad.mit.edu	36	2	95315987	95315987	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	95315987	95315987	G	A	SNP	PROM2	NM_144707	human	genbank	54_36p	1	provisional	missense	c.1981	p.E661K	0.91	HMMPfam_Prominin	"HMMPfam_Prominin,PatternScan_PA2_HIS"	-	no_errors
FAHD2A	51011	broad.mit.edu	36	2	95440028	95440028	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	95440028	95440028	C	T	SNP	FAHD2A	NM_016044	human	genbank	54_36p	1	validated	silent	c.489	p.A163	1	"superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase"	"superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase"	-	no_errors
ADRA2B	151	broad.mit.edu	36	2	96145134	96145134	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	96145134	96145134	C	T	SNP	ADRA2B	NM_000682	human	genbank	54_36p	-1	reviewed	missense	c.482	p.R161H	0.93	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SNRNP200	23020	broad.mit.edu	36	2	96306446	96306446	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	96306446	96306446	C	T	SNP	SNRNP200	NM_014014	human	genbank	54_36p	-1	validated	missense	c.6097	p.G2033R	0.98	"HMMSmart_SM00611,HMMPfam_Sec63"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMSmart_SM00611,HMMPfam_Sec63"	-	no_errors
SNRNP200	23020	broad.mit.edu	36	2	96320908	96320908	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	96320908	96320908	G	T	SNP	SNRNP200	NM_014014	human	genbank	54_36p	-1	validated	silent	c.2370	p.T790	1	"HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_Sec63,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SNRNP200	23020	broad.mit.edu	36	2	96321311	96321311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	96321311	96321311	G	A	SNP	SNRNP200	NM_014014	human	genbank	54_36p	-1	validated	missense	c.2215	p.R739W	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_Sec63,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SNRNP200	23020	broad.mit.edu	36	2	96328807	96328807	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	96328807	96328807	G	A	SNP	SNRNP200	NM_014014	human	genbank	54_36p	-1	validated	missense	c.716	p.T239I	1	NULL	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_Sec63,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ITPRIPL1	150771	broad.mit.edu	36	2	96356443	96356443	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	96356443	96356443	G	T	SNP	ITPRIPL1	NM_178495	human	genbank	54_36p	1	validated	missense	c.371	p.G124V	0.01	NULL	NULL	-	no_errors
FER1L5	90342	broad.mit.edu	36	2	96727007	96727007	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	96727007	96727007	C	T	SNP	FER1L5	NM_001077400	human	genbank	54_36p	1	provisional	silent	c.336	p.Y112	0	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
FER1L5	90342	broad.mit.edu	36	2	96733061	96733061	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	96733061	96733061	G	A	SNP	FER1L5	NM_001077400	human	genbank	54_36p	1	provisional	silent	c.2001	p.S667	0.37	NULL	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
CNNM3	26505	broad.mit.edu	36	2	96846657	96846658	+	Missense_Mutation	DNP	AA	AA	CT	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	96846657	96846658	AA	CT	DNP	CNNM3	NM_017623	human	genbank	54_36p	1	validated	missense	c.916_917	p.K306L	0.997:0.996	HMMPfam_DUF21	"HMMPfam_DUF21,HMMPfam_CBS"	-	no_errors
SEMA4C	54910	broad.mit.edu	36	2	96890669	96890669	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	96890669	96890669	G	C	SNP	SEMA4C	NM_017789	human	genbank	54_36p	-1	validated	nonsense	c.1923	p.Y641*	1	"superfamily_SSF48726,HMMSmart_IG"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
FAM178B	51252	broad.mit.edu	36	2	96907404	96907404	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	96907404	96907404	T	C	SNP	FAM178B	NM_016490	human	genbank	54_36p	-1	predicted	missense	c.277	p.T93A	0.99	NULL	NULL	-	no_errors
ANKRD36	375248	broad.mit.edu	36	2	97143353	97143354	+	Nonsense_Mutation	DNP	CC	CC	GT	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	97143353	97143354	CC	GT	DNP	ANKRD36	ENST00000289105	human	ensembl	54_36p	1	known	nonsense	c.150_151	p.YLL50*	0.001:0.001	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
ANKRD36	375248	broad.mit.edu	36	2	97143353	97143354	+	Nonsense_Mutation	DNP	CC	CC	GT	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	97143353	97143354	CC	GT	DNP	ANKRD36	ENST00000289105	human	ensembl	54_36p	1	known	nonsense	c.150_151	p.YLL50*	0.001:0.001	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ZAP70	7535	broad.mit.edu	36	2	97717433	97717433	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	97717433	97717433	A	G	SNP	ZAP70	NM_001079	human	genbank	54_36p	1	reviewed	missense	c.908	p.D303G	0.08	NULL	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TMEM131	23505	broad.mit.edu	36	2	97795420	97795420	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	97795420	97795420	C	A	SNP	TMEM131	NM_015348	human	genbank	54_36p	-1	validated	missense	c.1759	p.D587Y	1	NULL	NULL	-	no_errors
VWA3B	200403	broad.mit.edu	36	2	98286608	98286608	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	98286608	98286608	T	A	SNP	VWA3B	NM_144992	human	genbank	54_36p	1	provisional	silent	c.3432	p.P1144	0.99	NULL	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA"	-	no_errors
CNGA3	1261	broad.mit.edu	36	2	98379211	98379211	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	98379211	98379211	C	T	SNP	CNGA3	NM_001298	human	genbank	54_36p	1	reviewed	silent	c.1146	p.V382	0.21	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
CNGA3	1261	broad.mit.edu	36	2	98380026	98380026	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	98380026	98380026	C	T	SNP	CNGA3	NM_001298	human	genbank	54_36p	1	reviewed	missense	c.1961	p.T654I	0.02	NULL	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324"	-	no_errors
INPP4A	3631	broad.mit.edu	36	2	98537169	98537169	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	98537169	98537169	C	G	SNP	INPP4A	NM_001566	human	genbank	54_36p	1	reviewed	missense	c.1366	p.R456G	0.99	NULL	"superfamily_C2_CaLB,HMMSmart_C2"	-	no_errors
INPP4A	3631	broad.mit.edu	36	2	98547657	98547657	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	98547657	98547657	C	T	SNP	INPP4A	NM_001566	human	genbank	54_36p	1	reviewed	silent	c.2049	p.Y683	0.97	NULL	"HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
TSGA10	80705	broad.mit.edu	36	2	99054746	99054746	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	99054746	99054746	A	G	SNP	TSGA10	NM_025244	human	genbank	54_36p	-1	validated	missense	c.962	p.V321A	1	NULL	NULL	-	no_errors
MITD1	129531	broad.mit.edu	36	2	99152488	99152488	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	99152488	99152488	A	G	SNP	MITD1	NM_138798	human	genbank	54_36p	-1	provisional	missense	c.611	p.M204T	1	NULL	"HMMSmart_MIT,HMMPfam_MIT"	-	no_errors
LYG2	254773	broad.mit.edu	36	2	99228301	99228301	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	99228301	99228301	A	C	SNP	LYG2	NM_175735	human	genbank	54_36p	-1	reviewed	silent	c.237	p.P79	0.03	superfamily_SSF53955	"superfamily_SSF53955,HMMPfam_SLT"	-	no_errors
EIF5B	9669	broad.mit.edu	36	2	99373550	99373550	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	99373550	99373550	C	A	SNP	EIF5B	NM_015904	human	genbank	54_36p	1	reviewed	missense	c.2698	p.Q900K	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU_D2"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Initiation factor IF2/eIF5b domain 3,superfamily_Translation proteins"	-	no_errors
NPAS2	4862	broad.mit.edu	36	2	100931172	100931172	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	100931172	100931172	A	G	SNP	NPAS2	NM_002518	human	genbank	54_36p	1	reviewed	missense	c.407	p.Q136R	1	"HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785"	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,HMMPfam_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC"	-	no_errors
NPAS2	4862	broad.mit.edu	36	2	100947013	100947013	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	100947013	100947013	A	G	SNP	NPAS2	NM_002518	human	genbank	54_36p	1	reviewed	silent	c.660	p.L220	0.53	NULL	"HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,superfamily_HLH_basic,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785"	-	no_errors
C2orf29	55571	broad.mit.edu	36	2	101236156	101236156	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	101236156	101236156	G	C	SNP	C2orf29	NM_017546	human	genbank	54_36p	1	validated	missense	c.298	p.D100H	1	NULL	HMMPfam_DUF2363	-	no_errors
C2orf29	55571	broad.mit.edu	36	2	101240751	101240751	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	101240751	101240751	G	C	SNP	C2orf29	NM_017546	human	genbank	54_36p	1	validated	missense	c.581	p.R194P	0.99	NULL	HMMPfam_DUF2363	-	no_errors
IL1RL2	8808	broad.mit.edu	36	2	102218109	102218109	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	102218109	102218109	A	T	SNP	IL1RL2	NM_003854	human	genbank	54_36p	1	reviewed	missense	c.1618	p.R540W	0	NULL	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
IL1RL1	9173	broad.mit.edu	36	2	102325147	102325147	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	102325147	102325147	G	A	SNP	IL1RL1	NM_016232	human	genbank	54_36p	1	reviewed	missense	c.643	p.G215R	0	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
IL18R1	8809	broad.mit.edu	36	2	102350806	102350806	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	102350806	102350806	G	A	SNP	IL18R1	NM_003855	human	genbank	54_36p	1	reviewed	missense	c.148	p.E50K	0	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
IL18R1	8809	broad.mit.edu	36	2	102379668	102379668	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	102379668	102379668	C	G	SNP	IL18R1	NM_003855	human	genbank	54_36p	1	reviewed	missense	c.1516	p.L506V	0.23	"HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR"	"HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726"	-	no_errors
IL18RAP	8807	broad.mit.edu	36	2	102420236	102420236	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	102420236	102420236	G	T	SNP	IL18RAP	NM_003853	human	genbank	54_36p	1	reviewed	missense	c.712	p.V238F	1	"HMMSmart_SM00409,superfamily_Immunoglobulin"	"superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
POU3F3	5455	broad.mit.edu	36	2	104839468	104839468	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	104839468	104839468	G	A	SNP	POU3F3	NM_006236	human	genbank	54_36p	1	provisional	silent	c.1068	p.S356	1	"HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_2"	"HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
MRPS9	64965	broad.mit.edu	36	2	105021032	105021032	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	105021032	105021032	T	G	SNP	MRPS9	NM_182640	human	genbank	54_36p	1	reviewed	missense	c.50	p.L17R	0	NULL	"superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_Ribosomal_S9,PatternScan_RIBOSOMAL_S9"	-	no_errors
UXS1	80146	broad.mit.edu	36	2	106128237	106128237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	106128237	106128237	C	G	SNP	UXS1	NM_025076	human	genbank	54_36p	-1	validated	missense	c.298	p.V100L	1	"HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains"	"HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
UXS1	80146	broad.mit.edu	36	2	106128237	106128237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	106128237	106128237	C	G	SNP	UXS1	NM_025076	human	genbank	54_36p	-1	validated	missense	c.298	p.V100L	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase"	-	no_errors
ST6GAL2	84620	broad.mit.edu	36	2	106789823	106789823	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	106789823	106789823	T	C	SNP	ST6GAL2	NM_032528	human	genbank	54_36p	-1	validated	missense	c.1333	p.M445V	1	HMMPfam_Glyco_transf_29	"HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase"	-	no_errors
SLC5A7	60482	broad.mit.edu	36	2	107993138	107993138	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	107993138	107993138	G	A	SNP	SLC5A7	NM_021815	human	genbank	54_36p	1	provisional	missense	c.1132	p.V378I	0.92	HMMPfam_SSF	"PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF"	-	no_errors
SULT1C2	6819	broad.mit.edu	36	2	108276684	108276684	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	108276684	108276684	C	A	SNP	SULT1C2	NM_176825	human	genbank	54_36p	1	reviewed	silent	c.129	p.L43	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
GCC2	9648	broad.mit.edu	36	2	108454151	108454151	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	108454151	108454151	T	G	SNP	GCC2	NM_181453	human	genbank	54_36p	1	reviewed	missense	c.1934	p.V645G	0.32	NULL	"HMMPfam_GRIP,HMMSmart_Grip"	-	no_errors
GCC2	9648	broad.mit.edu	36	2	108482477	108482477	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	108482477	108482477	C	G	SNP	GCC2	NM_181453	human	genbank	54_36p	1	reviewed	missense	c.4819	p.Q1607E	1	NULL	"HMMPfam_GRIP,HMMSmart_Grip"	-	no_errors
SH3RF3	344558	broad.mit.edu	36	2	109330756	109330756	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	109330756	109330756	C	T	SNP	SH3RF3	NM_001099289	human	genbank	54_36p	1	provisional	silent	c.768	p.H256	0.9	superfamily_SH3-domain	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_stop_codon
ANKRD57	65124	broad.mit.edu	36	2	109730229	109730229	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	109730229	109730229	G	A	SNP	ANKRD57	NM_023016	human	genbank	54_36p	1	validated	missense	c.874	p.G292S	0.94	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKRD57	65124	broad.mit.edu	36	2	109730442	109730442	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	109730442	109730442	G	A	SNP	ANKRD57	NM_023016	human	genbank	54_36p	1	validated	missense	c.1087	p.A363T	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
MALL	7851	broad.mit.edu	36	2	110202545	110202545	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	110202545	110202545	T	A	SNP	MALL	NM_005434	human	genbank	54_36p	-1	validated	missense	c.292	p.T98S	1	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
NPHP1	4867	broad.mit.edu	36	2	110279507	110279507	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	110279507	110279507	A	C	SNP	NPHP1	NM_000272	human	genbank	54_36p	-1	reviewed	missense	c.818	p.I273R	0.63	NULL	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
BUB1	699	broad.mit.edu	36	2	111131611	111131611	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	111131611	111131611	T	C	SNP	BUB1	NM_004336	human	genbank	54_36p	-1	reviewed	missense	c.1601	p.N534S	1	NULL	"HMMPfam_Mad3_BUB1_I,HMMSmart_SM00777,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TMEM87B	84910	broad.mit.edu	36	2	112563719	112563719	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	112563719	112563719	C	G	SNP	TMEM87B	NM_032824	human	genbank	54_36p	1	validated	missense	c.985	p.L329V	0.74	HMMPfam_Lung_7-TM_R	HMMPfam_Lung_7-TM_R	-	no_errors
ZC3H6	376940	broad.mit.edu	36	2	112806178	112806178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	112806178	112806178	C	T	SNP	ZC3H6	NM_198581	human	genbank	54_36p	1	validated	missense	c.3212	p.S1071L	0.58	NULL	"superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_Multiheme cytochromes"	-	no_errors
TTL	150465	broad.mit.edu	36	2	112968226	112968226	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	112968226	112968226	G	T	SNP	TTL	NM_153712	human	genbank	54_36p	1	validated	missense	c.272	p.C91F	1	HMMPfam_TTL	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
SLC20A1	6574	broad.mit.edu	36	2	113131287	113131287	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	113131287	113131287	A	T	SNP	SLC20A1	NM_005415	human	genbank	54_36p	1	provisional	missense	c.776	p.E259V	1	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors
IL1F7	27178	broad.mit.edu	36	2	113392753	113392753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	113392753	113392753	G	C	SNP	IL1F7	NM_014439	human	genbank	54_36p	1	reviewed	missense	c.553	p.E185Q	0	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1"	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1"	-	no_errors
IL1F9	56300	broad.mit.edu	36	2	113458926	113458926	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	113458926	113458926	C	A	SNP	IL1F9	NM_019618	human	genbank	54_36p	1	reviewed	silent	c.339	p.P113	0.64	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1"	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1"	-	no_errors
IL1F6	27179	broad.mit.edu	36	2	113480759	113480759	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	113480759	113480759	G	A	SNP	IL1F6	NM_014440	human	genbank	54_36p	1	provisional	missense	c.238	p.G80R	0	"superfamily_Cytok_IL1_like,HMMSmart_IL1,HMMPfam_IL1"	"PatternScan_INTERLEUKIN_1,superfamily_Cytok_IL1_like,HMMSmart_IL1,HMMPfam_IL1"	-	no_errors
IL1F8	27177	broad.mit.edu	36	2	113500251	113500251	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	113500251	113500251	C	T	SNP	IL1F8	NM_014438	human	genbank	54_36p	-1	reviewed	silent	c.291	p.K97	0	superfamily_Cytokine	superfamily_Cytokine	-	no_errors
IL1F8	27177	broad.mit.edu	36	2	113503037	113503037	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	113503037	113503037	G	C	SNP	IL1F8	NM_014438	human	genbank	54_36p	-1	reviewed	missense	c.211	p.L71V	0.04	superfamily_Cytokine	superfamily_Cytokine	-	no_errors
IL1RN	3557	broad.mit.edu	36	2	113605175	113605175	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	113605175	113605175	G	T	SNP	IL1RN	NM_173841	human	genbank	54_36p	1	reviewed	missense	c.297	p.K99N	0.98	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1"	"HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1,PatternScan_INTERLEUKIN_1"	-	no_errors
PSD4	23550	broad.mit.edu	36	2	113666579	113666579	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	113666579	113666579	C	T	SNP	PSD4	NM_012455	human	genbank	54_36p	1	validated	missense	c.1780	p.R594C	0.64	"HMMPfam_Sec7,superfamily_Sec7 domain,HMMSmart_SM00222"	"HMMPfam_Sec7,superfamily_Sec7 domain,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PSD4	23550	broad.mit.edu	36	2	113671627	113671627	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	113671627	113671627	G	A	SNP	PSD4	NM_012455	human	genbank	54_36p	1	validated	missense	c.2402	p.R801H	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
PAX8	7849	broad.mit.edu	36	2	113715597	113715597	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	113715597	113715597	C	A	SNP	PAX8	NM_013953	human	genbank	54_36p	-1	reviewed	splice_site	c.777+1	e6+1	1	-	-	-	no_errors
DPP10	57628	broad.mit.edu	36	2	116227231	116227231	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	116227231	116227231	T	A	SNP	DPP10	NM_020868	human	genbank	54_36p	1	reviewed	missense	c.962	p.I321N	1	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N"	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9"	-	no_errors
DPP10	57628	broad.mit.edu	36	2	116227271	116227271	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	116227271	116227271	A	T	SNP	DPP10	NM_020868	human	genbank	54_36p	1	reviewed	silent	c.1002	p.V334	0.48	"HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	"HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	-	no_errors
INSIG2	51141	broad.mit.edu	36	2	118577263	118577263	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	118577263	118577263	C	G	SNP	INSIG2	NM_016133	human	genbank	54_36p	1	reviewed	missense	c.265	p.P89A	1	HMMPfam_INSIG	HMMPfam_INSIG	-	no_errors
MARCO	8685	broad.mit.edu	36	2	119456295	119456295	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	119456295	119456295	G	T	SNP	MARCO	NM_006770	human	genbank	54_36p	1	reviewed	missense	c.995	p.R332L	0	NULL	"HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
SCTR	6344	broad.mit.edu	36	2	119947568	119947568	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	119947568	119947568	C	A	SNP	SCTR	NM_002980	human	genbank	54_36p	-1	reviewed	missense	c.336	p.W112C	1	"superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM"	"superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
PTPN4	5775	broad.mit.edu	36	2	120439567	120439567	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	120439567	120439567	C	G	SNP	PTPN4	NM_002830	human	genbank	54_36p	1	reviewed	missense	c.2434	p.Q812E	1	"superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
CLASP1	23332	broad.mit.edu	36	2	121935148	121935148	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	121935148	121935148	G	A	SNP	CLASP1	NM_015282	human	genbank	54_36p	-1	validated	missense	c.1031	p.A344V	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
CNTNAP5	129684	broad.mit.edu	36	2	124978470	124978470	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	124978470	124978470	A	C	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	silent	c.1191	p.T397	0.86	"superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	broad.mit.edu	36	2	125238037	125238037	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	125238037	125238037	C	T	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	silent	c.2373	p.N791	1	superfamily_ConA_like_lec_gl	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	broad.mit.edu	36	2	125246891	125246891	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	125246891	125246891	T	C	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	missense	c.2576	p.V859A	0	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP5	129684	broad.mit.edu	36	2	125388238	125388238	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	125388238	125388238	A	C	SNP	CNTNAP5	NM_130773	human	genbank	54_36p	1	reviewed	missense	c.3824	p.K1275T	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
BIN1	274	broad.mit.edu	36	2	127536175	127536175	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	127536175	127536175	G	C	SNP	BIN1	NM_139343	human	genbank	54_36p	-1	reviewed	silent	c.843	p.V281	0.85	NULL	"HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
BIN1	274	broad.mit.edu	36	2	127544637	127544637	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	127544637	127544637	C	T	SNP	BIN1	NM_139343	human	genbank	54_36p	-1	reviewed	missense	c.277	p.D93N	0.99	"HMMPfam_BAR,HMMSmart_SM00721"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721"	-	no_errors
ERCC3	2071	broad.mit.edu	36	2	127762878	127762878	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	127762878	127762878	G	A	SNP	ERCC3	NM_000122	human	genbank	54_36p	-1	reviewed	silent	c.855	p.I285	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_ResIII,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
MAP3K2	10746	broad.mit.edu	36	2	127799790	127799790	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	127799790	127799790	C	G	SNP	MAP3K2	NM_006609	human	genbank	54_36p	-1	reviewed	missense	c.661	p.D221H	1	NULL	"HMMPfam_PB1,HMMSmart_SM00666,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
PROC	5624	broad.mit.edu	36	2	127893996	127893996	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	127893996	127893996	A	C	SNP	PROC	NM_000312	human	genbank	54_36p	1	validated	missense	c.8	p.Q3P	0.29	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
IWS1	55677	broad.mit.edu	36	2	127978935	127978937	+	In_Frame_Del	DEL	CTT	-	CTT	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	CTT	CTT	-	-	CTT	CTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	127978935	127978937	CTT	-	DEL	IWS1	NM_017969	human	genbank	54_36p	-1	validated	in_frame_del	c.1014_1012	p.K338in_frame_del	0.000:0.001:0.004	NULL	HMMPfam_IWS1_C	"(deletion:cds_exon[127978730,127979798])"	no_errors
MYO7B	4648	broad.mit.edu	36	2	128082867	128082867	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	128082867	128082867	G	-	DEL	MYO7B	NM_001080527	human	genbank	54_36p	1	provisional	frame_shift_del	c.2758	p.G920fs	1	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[128082753,128082923])"	no_errors
MYO7B	4648	broad.mit.edu	36	2	128097353	128097353	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	128097353	128097353	A	T	SNP	MYO7B	NM_001080527	human	genbank	54_36p	1	provisional	missense	c.3674	p.H1225L	0	HMMSmart_SM00295	###############################################################################################################################################################################################################################################################	-	no_errors
MYO7B	4648	broad.mit.edu	36	2	128101356	128101356	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	128101356	128101356	G	T	SNP	MYO7B	NM_001080527	human	genbank	54_36p	1	provisional	splice_site	c.4382+1	e31+1	1	-	-	-	no_errors
SAP130	79595	broad.mit.edu	36	2	128429381	128429381	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	128429381	128429381	G	T	SNP	SAP130	NM_024545	human	genbank	54_36p	-1	validated	missense	c.2044	p.P682T	1	NULL	NULL	-	no_errors
SAP130	79595	broad.mit.edu	36	2	128470461	128470473	+	Frame_Shift_Del	DEL	GGCTACTCCTCTC	-	GGCTACTCCTCTC	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	GGCTACTCCTCTC	GGCTACTCCTCTC	-	-	GGCTACTCCTCTC	GGCTACTCCTCTC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	128470461	128470473	GGCTACTCCTCTC	-	DEL	SAP130	NM_024545	human	genbank	54_36p	-1	validated	frame_shift_del	c.1366_1354	p.E452fs	1.000:1.000:1.000:0.998:0.784:0.986:0.996:1.000:1.000:1.000:1.000:1.000:0.999	NULL	NULL	"(deletion:cds_exon[128470394,128470535])"	no_errors
POTEF	728378	broad.mit.edu	36	2	130594259	130594259	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	130594259	130594259	C	A	SNP	POTEF	NM_001099771	human	genbank	54_36p	-1	validated	missense	c.300	p.K100N	0.01	superfamily_ANK	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
PTPN18	26469	broad.mit.edu	36	2	130833295	130833295	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	130833295	130833295	C	G	SNP	PTPN18	NM_014369	human	genbank	54_36p	1	reviewed	missense	c.222	p.I74M	0.08	"HMMSmart_PTPc,superfamily_SSF52799,HMMPfam_Y_phosphatase"	"HMMSmart_PTPc,superfamily_SSF52799,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPN18	26469	broad.mit.edu	36	2	130843191	130843191	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	130843191	130843191	T	C	SNP	PTPN18	NM_014369	human	genbank	54_36p	1	reviewed	missense	c.430	p.Y144H	1	"HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799"	"HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799"	-	no_errors
FAM123C	205147	broad.mit.edu	36	2	131237037	131237037	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	131237037	131237037	A	T	SNP	FAM123C	NM_001105193	human	genbank	54_36p	1	validated	missense	c.922	p.R308W	0.22	HMMPfam_WTX	HMMPfam_WTX	-	no_errors
FAM123C	205147	broad.mit.edu	36	2	131238031	131238031	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	131238031	131238031	C	G	SNP	FAM123C	NM_001105193	human	genbank	54_36p	1	validated	missense	c.1916	p.P639R	0.05	NULL	HMMPfam_WTX	-	no_errors
ARHGEF4	50649	broad.mit.edu	36	2	131502028	131502028	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	131502028	131502028	C	T	SNP	ARHGEF4	NM_015320	human	genbank	54_36p	1	reviewed	silent	c.468	p.D156	0.79	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
ARHGEF4	50649	broad.mit.edu	36	2	131502040	131502040	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	131502040	131502040	C	A	SNP	ARHGEF4	NM_015320	human	genbank	54_36p	1	reviewed	missense	c.480	p.S160R	0.98	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
ARHGEF4	50649	broad.mit.edu	36	2	131517605	131517605	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	131517605	131517605	C	T	SNP	ARHGEF4	NM_015320	human	genbank	54_36p	1	reviewed	silent	c.1578	p.H526	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
ARHGEF4	50649	broad.mit.edu	36	2	131519516	131519516	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	131519516	131519516	C	T	SNP	ARHGEF4	NM_032995	human	genbank	54_36p	1	reviewed	missense	c.1948	p.R650W	0	NULL	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
PLEKHB2	55041	broad.mit.edu	36	2	131600758	131600758	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	131600758	131600758	C	G	SNP	PLEKHB2	NM_001100623	human	genbank	54_36p	1	validated	missense	c.222	p.D74E	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
POTEE	445582	broad.mit.edu	36	2	131692496	131692497	+	Frame_Shift_Del	DEL	AT	-	AT	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	131692496	131692497	AT	-	DEL	POTEE	NM_001083538	human	genbank	54_36p	1	validated	frame_shift_del	c.51_52	p.F18fs	0.000:0.000	NULL	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	"(deletion:cds_exon[131692446,131692966])"	no_errors
NCKAP5	344148	broad.mit.edu	36	2	133256692	133256692	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	133256692	133256692	G	C	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	missense	c.4162	p.Q1388E	0	NULL	NULL	-	no_errors
NCKAP5	344148	broad.mit.edu	36	2	133257527	133257527	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	133257527	133257527	C	A	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	missense	c.3327	p.E1109D	0.17	NULL	NULL	-	no_errors
NCKAP5	344148	broad.mit.edu	36	2	133258686	133258686	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	133258686	133258686	C	G	SNP	NAP5	NM_207363	human	genbank	54_36p	-1	validated	missense	c.2168	p.R723T	0.19	NULL	NULL	-	no_errors
MGAT5	4249	broad.mit.edu	36	2	134728478	134728478	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	134728478	134728478	C	T	SNP	MGAT5	NM_002410	human	genbank	54_36p	1	validated	nonsense	c.34	p.Q12*	1	NULL	NULL	-	no_errors
CCNT2	905	broad.mit.edu	36	2	135428303	135428303	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	135428303	135428303	T	G	SNP	CCNT2	NM_058241	human	genbank	54_36p	1	reviewed	missense	c.1808	p.V603G	1	NULL	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385"	-	no_errors
CCNT2	905	broad.mit.edu	36	2	135428333	135428333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	135428333	135428333	G	A	SNP	CCNT2	NM_058241	human	genbank	54_36p	1	reviewed	missense	c.1838	p.S613N	0.9	NULL	"HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like"	-	no_errors
YSK4	80122	broad.mit.edu	36	2	135455238	135455238	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	135455238	135455238	A	T	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	nonsense	c.3543	p.C1181*	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
YSK4	80122	broad.mit.edu	36	2	135461854	135461854	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	135461854	135461854	C	A	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	missense	c.1058	p.G353V	0	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
YSK4	80122	broad.mit.edu	36	2	135495793	135495793	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	135495793	135495793	T	A	SNP	YSK4	NM_025052	human	genbank	54_36p	-1	validated	missense	c.100	p.N34Y	0.89	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
LCT	3938	broad.mit.edu	36	2	136281181	136281181	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	136281181	136281181	G	A	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	missense	c.4160	p.S1387F	0.63	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_2"	"superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_1,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
LCT	3938	broad.mit.edu	36	2	136283658	136283658	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	136283658	136283658	C	A	SNP	LCT	NM_002299	human	genbank	54_36p	-1	reviewed	missense	c.2729	p.G910V	1	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_2"	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2"	-	no_errors
THSD7B	80731	broad.mit.edu	36	2	137885763	137885763	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	137885763	137885763	G	T	SNP	THSD7B	NM_001080427	human	genbank	54_36p	1	provisional	missense	c.2717	p.C906F	1	"HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
HNMT	3176	broad.mit.edu	36	2	138487892	138487892	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	138487892	138487892	T	A	SNP	HNMT	NM_006895	human	genbank	54_36p	1	reviewed	missense	c.601	p.S201T	0.23	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
LRP1B	53353	broad.mit.edu	36	2	140847100	140847100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	140847100	140847100	C	T	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.10715	p.C3572Y	1	"HMMPfam_Ldl_recept_a,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa,PatternScan_LDLRA_1"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	broad.mit.edu	36	2	140918674	140918674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	140918674	140918674	G	A	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.10102	p.L3368F	0.99	"HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	broad.mit.edu	36	2	141075582	141075582	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	141075582	141075582	T	A	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.6896	p.D2299V	1	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1B	53353	broad.mit.edu	36	2	141287810	141287810	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	141287810	141287810	A	G	SNP	LRP1B	NM_018557	human	genbank	54_36p	-1	validated	missense	c.5245	p.W1749R	1	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGAP15	55843	broad.mit.edu	36	2	143909649	143909649	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	143909649	143909649	G	T	SNP	ARHGAP15	NM_018460	human	genbank	54_36p	1	validated	missense	c.484	p.V162L	0.96	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
ZEB2	9839	broad.mit.edu	36	2	144863773	144863773	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	144863773	144863773	C	A	SNP	ZEB2	NM_014795	human	genbank	54_36p	-1	validated	silent	c.3360	p.G1120	1	NULL	"PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX"	-	no_errors
ZEB2	9839	broad.mit.edu	36	2	144878083	144878083	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	144878083	144878083	A	G	SNP	ZEB2	NM_014795	human	genbank	54_36p	-1	validated	missense	c.677	p.L226P	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1,superfamily_SSF57667"	-	no_errors
ZEB2	9839	broad.mit.edu	36	2	144903880	144903880	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	144903880	144903880	T	C	SNP	ZEB2	NM_014795	human	genbank	54_36p	-1	validated	missense	c.257	p.D86G	1	NULL	"HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1,superfamily_SSF57667"	-	no_errors
ORC4	5000	broad.mit.edu	36	2	148409633	148409633	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	148409633	148409633	A	G	SNP	ORC4L	NM_002552	human	genbank	54_36p	-1	reviewed	silent	c.1227	p.T409	1	NULL	"superfamily_SSF52540,HMMSmart_AAA"	-	no_errors
MBD5	55777	broad.mit.edu	36	2	148963614	148963614	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	148963614	148963614	G	T	SNP	MBD5	NM_018328	human	genbank	54_36p	1	validated	missense	c.3244	p.D1082Y	1	NULL	"HMMSmart_SM00391,HMMPfam_MBD,superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP"	-	no_errors
LYPD6B	130576	broad.mit.edu	36	2	149777755	149777755	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	149777755	149777755	C	T	SNP	LYPD6B	NM_177964	human	genbank	54_36p	1	provisional	missense	c.332	p.T111I	1	"superfamily_SSF57302,HMMSmart_LU"	"superfamily_SSF57302,HMMSmart_LU"	-	no_errors
RIF1	55183	broad.mit.edu	36	2	152002102	152002102	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152002102	152002102	G	C	SNP	RIF1	NM_018151	human	genbank	54_36p	1	validated	missense	c.1474	p.D492H	1	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
RIF1	55183	broad.mit.edu	36	2	152022519	152022519	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152022519	152022519	A	G	SNP	RIF1	NM_018151	human	genbank	54_36p	1	validated	splice_site	c.2653-2	e23-2	1	-	-	-	no_errors
RIF1	55183	broad.mit.edu	36	2	152022643	152022643	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	152022643	152022643	A	G	SNP	RIF1	NM_018151	human	genbank	54_36p	1	validated	silent	c.2775	p.K925	1	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
NEB	4703	broad.mit.edu	36	2	152070318	152070318	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152070318	152070318	C	G	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.18559	p.E6187Q	1	"HMMSmart_SM00227,HMMPfam_Nebulin"	"HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
NEB	4703	broad.mit.edu	36	2	152101951	152101951	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152101951	152101951	A	C	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.16045	p.Y5349D	1	HMMSmart_SM00227	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	-	no_errors
NEB	4703	broad.mit.edu	36	2	152106206	152106206	+	Splice_Site	DEL	C	-	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	152106206	152106206	C	-	DEL	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	splice_site_del	c.15579+1	e107+1	1	-	-	"(deletion:intron[152105562,152106206])"	no_errors
NEB	4703	broad.mit.edu	36	2	152110759	152110760	+	Splice_Site	INS	-	T	-	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	152110759	152110760	-	T	INS	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	splice_site_ins	c.15364-2_15364-1	e106-1	1.000:0.970	-	-	-	no_errors
NEB	4703	broad.mit.edu	36	2	152207370	152207370	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152207370	152207370	G	T	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	silent	c.8337	p.I2779	1	"HMMPfam_Nebulin,HMMSmart_SM00227"	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	-	no_errors
NEB	4703	broad.mit.edu	36	2	152274462	152274463	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	-	-	T	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	152274462	152274463	-	T	INS	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.989_988	p.T330fs	0.999:1.000	"HMMSmart_SM00227,HMMPfam_Nebulin"	"HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
CACNB4	785	broad.mit.edu	36	2	152404090	152404090	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152404090	152404090	T	A	SNP	CACNB4	NM_000726	human	genbank	54_36p	-1	reviewed	missense	c.1352	p.E451V	1	NULL	"superfamily_SH3-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ca_channel_B,HMMSmart_SM00072"	-	no_errors
CACNB4	785	broad.mit.edu	36	2	152437208	152437208	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152437208	152437208	A	T	SNP	CACNB4	NM_000726	human	genbank	54_36p	-1	reviewed	silent	c.567	p.S189	0.98	superfamily_SH3-domain	"HMMPfam_Ca_channel_B,superfamily_SH3-domain,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
STAM2	10254	broad.mit.edu	36	2	152696898	152696898	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	152696898	152696898	T	G	SNP	STAM2	NM_005843	human	genbank	54_36p	-1	reviewed	missense	c.1001	p.D334A	1	NULL	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,HMMPfam_UIM,HMMSmart_SM00726,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
FMNL2	114793	broad.mit.edu	36	2	153184315	153184315	+	Silent	SNP	C	C	A	rs72290335	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	153184315	153184315	C	A	SNP	FMNL2	NM_052905	human	genbank	54_36p	1	reviewed	silent	c.1674	p.P558	0.59	NULL	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
FMNL2	114793	broad.mit.edu	36	2	153184318	153184318	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	153184318	153184318	T	C	SNP	FMNL2	NM_052905	human	genbank	54_36p	1	reviewed	silent	c.1677	p.P559	0.49	NULL	"HMMSmart_FH2,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_FH2_actin_bd"	-	no_errors
GALNT13	114805	broad.mit.edu	36	2	154960832	154960832	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	154960832	154960832	C	A	SNP	GALNT13	NM_052917	human	genbank	54_36p	1	validated	missense	c.1240	p.L414I	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
GALNT13	114805	broad.mit.edu	36	2	155015182	155015182	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	155015182	155015182	G	A	SNP	GALNT13	NM_052917	human	genbank	54_36p	1	validated	missense	c.1544	p.R515Q	1	"HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins"	"HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases"	-	no_errors
ERMN	57471	broad.mit.edu	36	2	157886480	157886480	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	157886480	157886480	G	A	SNP	ERMN	NM_001009959	human	genbank	54_36p	-1	validated	missense	c.443	p.T148I	0	NULL	NULL	-	no_errors
CYTIP	9595	broad.mit.edu	36	2	157980773	157980773	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	157980773	157980773	T	A	SNP	CYTIP	NM_004288	human	genbank	54_36p	-1	reviewed	missense	c.742	p.S248C	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
ACVR1C	130399	broad.mit.edu	36	2	158107611	158107612	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	158107611	158107612	GC	AA	DNP	ACVR1C	NM_145259	human	genbank	54_36p	-1	validated	missense	c.953_952	p.A318F	1.000:1.000	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase"	"superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ACVR1	90	broad.mit.edu	36	2	158345220	158345220	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	158345220	158345220	C	A	SNP	ACVR1	NM_001105	human	genbank	54_36p	-1	reviewed	missense	c.206	p.G69V	1	"HMMPfam_Activin_recp,superfamily_SSF57302"	"HMMPfam_Activin_recp,superfamily_SSF57302,HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PKP4	8502	broad.mit.edu	36	2	159196682	159196682	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	159196682	159196682	T	C	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	missense	c.1325	p.L442S	0.97	NULL	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
PKP4	8502	broad.mit.edu	36	2	159226104	159226104	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	159226104	159226104	G	A	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	missense	c.2107	p.A703T	1	superfamily_ARM repeat	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
PKP4	8502	broad.mit.edu	36	2	159227811	159227811	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	159227811	159227811	A	T	SNP	PKP4	NM_003628	human	genbank	54_36p	1	reviewed	nonsense	c.2368	p.K790*	1	superfamily_ARM repeat	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
TANC1	85461	broad.mit.edu	36	2	159743390	159743390	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	159743390	159743390	G	A	SNP	TANC1	NM_033394	human	genbank	54_36p	1	validated	silent	c.1980	p.L660	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2"	-	no_errors
TANC1	85461	broad.mit.edu	36	2	159794435	159794435	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	159794435	159794435	A	T	SNP	TANC1	NM_033394	human	genbank	54_36p	1	validated	nonsense	c.4252	p.K1418*	1	superfamily_TPR-like	"HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TANC1	85461	broad.mit.edu	36	2	159794529	159794529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	159794529	159794529	G	T	SNP	TANC1	NM_033394	human	genbank	54_36p	1	validated	missense	c.4346	p.G1449V	0	NULL	"HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TANC1	85461	broad.mit.edu	36	2	159794846	159794846	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	159794846	159794846	C	T	SNP	TANC1	NM_033394	human	genbank	54_36p	1	validated	nonsense	c.4663	p.Q1555*	0	NULL	"HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TANC1	85461	broad.mit.edu	36	2	159794874	159794874	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	159794874	159794874	G	C	SNP	TANC1	NM_033394	human	genbank	54_36p	1	validated	missense	c.4691	p.S1564T	1	NULL	"HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TANC1	85461	broad.mit.edu	36	2	159795659	159795659	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	159795659	159795659	C	G	SNP	TANC1	NM_033394	human	genbank	54_36p	1	validated	missense	c.5476	p.L1826V	0.05	NULL	"HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
BAZ2B	29994	broad.mit.edu	36	2	159997727	159997727	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	159997727	159997727	C	T	SNP	BAZ2B	NM_013450	human	genbank	54_36p	-1	validated	missense	c.1687	p.G563R	1	NULL	"superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
PLA2R1	22925	broad.mit.edu	36	2	160542040	160542040	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	160542040	160542040	C	T	SNP	PLA2R1	NM_007366	human	genbank	54_36p	-1	validated	splice_site	c.2401+1	e15+1	1	-	-	-	no_errors
ITGB6	3694	broad.mit.edu	36	2	160702284	160702284	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	160702284	160702284	T	C	SNP	ITGB6	NM_000888	human	genbank	54_36p	-1	provisional	missense	c.1567	p.I523V	0.53	"superfamily_EGF/Laminin,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA"	###############################################################################################################################################################################################################################################################	-	no_errors
RBMS1	5937	broad.mit.edu	36	2	161058099	161058099	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	161058099	161058099	G	A	SNP	RBMS1	NM_016836	human	genbank	54_36p	-1	reviewed	nonsense	c.22	p.Q8*	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
SLC4A10	57282	broad.mit.edu	36	2	162515553	162515553	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	162515553	162515553	G	A	SNP	SLC4A10	NM_022058	human	genbank	54_36p	1	validated	missense	c.2400	p.M800I	1	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1"	-	no_errors
DPP4	1803	broad.mit.edu	36	2	162589655	162589655	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	162589655	162589655	T	C	SNP	DPP4	NM_001935	human	genbank	54_36p	-1	reviewed	missense	c.928	p.R310G	0.26	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N"	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER"	-	no_errors
DPP4	1803	broad.mit.edu	36	2	162589667	162589667	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	162589667	162589667	C	T	SNP	DPP4	NM_001935	human	genbank	54_36p	-1	reviewed	missense	c.916	p.A306T	0.99	"HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	"HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,PatternScan_PRO_ENDOPEP_SER,superfamily_alpha/beta-Hydrolases,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain"	-	no_errors
FAP	2191	broad.mit.edu	36	2	162735796	162735796	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	162735796	162735796	G	T	SNP	FAP	NM_004460	human	genbank	54_36p	-1	reviewed	missense	c.2222	p.T741K	0.01	"superfamily_SSF53474,HMMPfam_Peptidase_S9"	"superfamily_SSF82171,HMMPfam_DPPIV_N,superfamily_SSF53474,HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER"	-	no_errors
FAP	2191	broad.mit.edu	36	2	162753120	162753156	+	Splice_Site	DEL	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	-	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	162753120	162753156	CTAAAGGAAAAACAAAAAAAACAAGAATCTTTGATTG	-	DEL	FAP	NM_004460	human	genbank	54_36p	-1	reviewed	splice_site_del	c.1620-37_1620-1	e20-1	1.000:1.000:0.983:0.937:0.460:0.017:0.001:0.008:0.005:0.005:0.004:0.003:0.000:0.001:0.001:0.002:0.001:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.000:0.002:0.000:0.001:0.001:0.009:0.001:0.000:0.000	-	-	"(deletion:intron[162753120,162753858])"	no_errors
IFIH1	64135	broad.mit.edu	36	2	162852935	162852935	+	Missense_Mutation	SNP	T	T	C	rs35207787	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	162852935	162852935	T	C	SNP	IFIH1	NM_022168	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.K351E	0.82	"HMMSmart_SM00487,HMMPfam_ResIII,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"superfamily_DEATH domain,HMMPfam_CARD,HMMSmart_SM00487,HMMPfam_ResIII,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
GCA	25801	broad.mit.edu	36	2	162912415	162912415	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	162912415	162912415	G	T	SNP	GCA	NM_012198	human	genbank	54_36p	1	validated	nonsense	c.109	p.G37*	1	NULL	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1"	-	no_errors
KCNH7	90134	broad.mit.edu	36	2	162961626	162961626	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	162961626	162961626	A	T	SNP	KCNH7	NM_033272	human	genbank	54_36p	-1	reviewed	missense	c.2483	p.L828H	1	"superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	"superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
KCNH7	90134	broad.mit.edu	36	2	162988192	162988192	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	162988192	162988192	T	C	SNP	KCNH7	NM_033272	human	genbank	54_36p	-1	reviewed	missense	c.2054	p.E685G	1	superfamily_cAMP-binding domain-like	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
KCNH7	90134	broad.mit.edu	36	2	163010919	163010919	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	163010919	163010919	A	C	SNP	KCNH7	NM_033272	human	genbank	54_36p	-1	reviewed	missense	c.1409	p.F470C	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
FIGN	55137	broad.mit.edu	36	2	164175267	164175267	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	164175267	164175267	G	T	SNP	FIGN	NM_018086	human	genbank	54_36p	-1	validated	missense	c.1321	p.P441T	1	NULL	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
GRB14	2888	broad.mit.edu	36	2	165057912	165057912	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	165057912	165057912	G	A	SNP	GRB14	NM_004490	human	genbank	54_36p	-1	reviewed	silent	c.1503	p.H501	1	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	"HMMPfam_RA,HMMSmart_RA,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_BPS,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	-	no_errors
GRB14	2888	broad.mit.edu	36	2	165184567	165184567	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	165184567	165184567	T	A	SNP	GRB14	NM_004490	human	genbank	54_36p	-1	reviewed	missense	c.200	p.K67M	1	NULL	"HMMPfam_RA,HMMSmart_RA,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_PH,HMMSmart_PH,HMMPfam_BPS,superfamily_SSF50729,superfamily_SSF55550"	-	no_errors
COBLL1	22837	broad.mit.edu	36	2	165259032	165259032	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	165259032	165259032	G	C	SNP	COBLL1	NM_014900	human	genbank	54_36p	-1	validated	missense	c.3230	p.S1077C	0	NULL	HMMPfam_Cobl	-	no_errors
COBLL1	22837	broad.mit.edu	36	2	165259149	165259149	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	165259149	165259149	C	T	SNP	COBLL1	NM_014900	human	genbank	54_36p	-1	validated	missense	c.3113	p.S1038N	0.97	NULL	HMMPfam_Cobl	-	no_errors
SCN3A	6328	broad.mit.edu	36	2	165655606	165655606	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	165655606	165655606	G	C	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	missense	c.5303	p.A1768G	1	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
SCN3A	6328	broad.mit.edu	36	2	165656048	165656048	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	165656048	165656048	G	A	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	nonsense	c.4861	p.R1621*	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324"	-	no_errors
SCN3A	6328	broad.mit.edu	36	2	165660402	165660402	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	165660402	165660402	A	G	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	silent	c.4296	p.V1432	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324"	-	no_errors
SCN3A	6328	broad.mit.edu	36	2	165711590	165711590	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	165711590	165711590	A	G	SNP	SCN3A	NM_006922	human	genbank	54_36p	-1	reviewed	missense	c.1576	p.S526P	1	NULL	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324"	-	no_errors
SCN2A	6326	broad.mit.edu	36	2	165880396	165880396	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	165880396	165880396	A	G	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	missense	c.1553	p.E518G	0.99	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN2A	6326	broad.mit.edu	36	2	165907090	165907090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	165907090	165907090	G	T	SNP	SCN2A	NM_001040142	human	genbank	54_36p	1	reviewed	missense	c.2427	p.K809N	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
CSRNP3	80034	broad.mit.edu	36	2	166222658	166222658	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	166222658	166222658	G	A	SNP	CSRNP3	NM_024969	human	genbank	54_36p	1	provisional	missense	c.290	p.R97H	1	NULL	NULL	-	no_errors
CSRNP3	80034	broad.mit.edu	36	2	166243760	166243760	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	166243760	166243760	G	C	SNP	CSRNP3	NM_024969	human	genbank	54_36p	1	provisional	missense	c.1009	p.D337H	1	NULL	NULL	-	no_errors
TTC21B	79809	broad.mit.edu	36	2	166505814	166505814	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	166505814	166505814	C	A	SNP	TTC21B	NM_024753	human	genbank	54_36p	-1	validated	missense	c.679	p.D227Y	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	-	no_errors
SCN1A	6323	broad.mit.edu	36	2	166556278	166556278	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	166556278	166556278	G	C	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	missense	c.5720	p.S1907C	1	"HMMSmart_IQ,HMMPfam_IQ"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ,PatternScan_RIBONUCLEASE_P"	-	no_errors
SCN1A	6323	broad.mit.edu	36	2	166600990	166600990	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	166600990	166600990	T	A	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	silent	c.3210	p.G1070	1	HMMPfam_Na_trans_assoc	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324"	-	no_errors
SCN9A	6335	broad.mit.edu	36	2	166793592	166793592	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	166793592	166793592	G	T	SNP	SCN9A	NM_002977	human	genbank	54_36p	-1	validated	missense	c.4028	p.T1343K	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN9A	6335	broad.mit.edu	36	2	166802907	166802907	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	166802907	166802907	A	G	SNP	SCN9A	NM_002977	human	genbank	54_36p	-1	validated	silent	c.3711	p.Y1237	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN9A	6335	broad.mit.edu	36	2	166857999	166857999	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	166857999	166857999	G	C	SNP	SCN9A	NM_002977	human	genbank	54_36p	-1	validated	missense	c.1095	p.N365K	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN7A	6332	broad.mit.edu	36	2	166970365	166970365	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	166970365	166970365	C	T	SNP	SCN7A	NM_002976	human	genbank	54_36p	-1	validated	missense	c.5020	p.E1674K	0.07	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc"	-	no_errors
SCN7A	6332	broad.mit.edu	36	2	167037189	167037189	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	167037189	167037189	A	T	SNP	SCN7A	NM_002976	human	genbank	54_36p	-1	validated	silent	c.456	p.L152	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
XIRP2	129446	broad.mit.edu	36	2	167809621	167809621	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	167809621	167809621	A	T	SNP	XIRP2	NM_152381	human	genbank	54_36p	1	validated	missense	c.3473	p.Q1158L	0.99	NULL	HMMPfam_Xin	-	no_errors
XIRP2	129446	broad.mit.edu	36	2	167811897	167811897	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	167811897	167811897	C	A	SNP	XIRP2	NM_152381	human	genbank	54_36p	1	validated	missense	c.5749	p.L1917I	0.98	NULL	HMMPfam_Xin	-	no_errors
XIRP2	129446	broad.mit.edu	36	2	167822992	167822992	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	167822992	167822992	C	A	SNP	XIRP2	NM_001079810	human	genbank	54_36p	1	validated	missense	c.1690	p.P564T	1	NULL	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
B3GALT1	8708	broad.mit.edu	36	2	168434166	168434166	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	168434166	168434166	C	A	SNP	B3GALT1	NM_020981	human	genbank	54_36p	1	reviewed	missense	c.371	p.P124H	0.98	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
ABCB11	8647	broad.mit.edu	36	2	169541442	169541451	+	Splice_Site	DEL	TTCTGGAGTG	-	TTCTGGAGTG	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	TTCTGGAGTG	TTCTGGAGTG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	169541442	169541451	TTCTGGAGTG	-	DEL	ABCB11	NM_003742	human	genbank	54_36p	-1	reviewed	splice_site_del	c.1199_1198	p.K400fs	1.000:0.999	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	"(deletion:cds_exon[169541333,169541443], intron[169541444,169544621])"	no_errors
LRP2	4036	broad.mit.edu	36	2	169742717	169742717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	169742717	169742717	G	T	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.10235	p.A3412D	1	"superfamily_SSF63825,HMMPfam_Ldl_recept_b,HMMSmart_LY"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	broad.mit.edu	36	2	169771293	169771293	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	169771293	169771293	A	G	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.7183	p.S2395P	0.97	superfamily_SSF63825	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	broad.mit.edu	36	2	169771586	169771586	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	169771586	169771586	A	G	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.6890	p.L2297S	1	"HMMPfam_Ldl_recept_b,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	broad.mit.edu	36	2	169776879	169776879	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	169776879	169776879	G	C	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.6125	p.S2042C	1	"HMMSmart_EGF,superfamily_SSF57196"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	broad.mit.edu	36	2	169778553	169778553	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	169778553	169778553	G	T	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.5900	p.A1967E	0.59	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	broad.mit.edu	36	2	169778578	169778578	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	169778578	169778578	G	T	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.5875	p.Q1959K	0.63	"HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	broad.mit.edu	36	2	169812238	169812238	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	169812238	169812238	G	A	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.2804	p.A935V	0	"HMMSmart_LY,superfamily_SSF63825"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP2	4036	broad.mit.edu	36	2	169855736	169855736	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	169855736	169855736	C	T	SNP	LRP2	NM_004525	human	genbank	54_36p	-1	validated	missense	c.787	p.V263I	0	superfamily_LDL_rcpt_classA_cys-rich	###############################################################################################################################################################################################################################################################	-	no_errors
BBS5	129880	broad.mit.edu	36	2	170044343	170044343	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	170044343	170044343	G	T	SNP	BBS5	NM_152384	human	genbank	54_36p	1	reviewed	missense	c.34	p.D12Y	1	HMMPfam_DUF1448	"HMMPfam_DUF1448,HMMSmart_SM00683"	-	no_errors
FASTKD1	79675	broad.mit.edu	36	2	170102011	170102011	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	170102011	170102011	C	T	SNP	FASTKD1	NM_024622	human	genbank	54_36p	-1	validated	silent	c.2160	p.S720	0.32	HMMPfam_FAST_2	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
FASTKD1	79675	broad.mit.edu	36	2	170125449	170125449	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	170125449	170125449	G	C	SNP	FASTKD1	NM_024622	human	genbank	54_36p	-1	validated	missense	c.665	p.T222S	0.93	NULL	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
UBR3	130507	broad.mit.edu	36	2	170580092	170580092	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	170580092	170580092	G	T	SNP	UBR3	NM_172070	human	genbank	54_36p	1	validated	missense	c.982	p.A328S	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4"	-	no_errors
MYO3B	140469	broad.mit.edu	36	2	170948469	170948498	+	In_Frame_Del	DEL	TCCAGACTTTATCATGGGGTGAAACGCGCC	-	TCCAGACTTTATCATGGGGTGAAACGCGCC	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	TCCAGACTTTATCATGGGGTGAAACGCGCC	TCCAGACTTTATCATGGGGTGAAACGCGCC	-	-	TCCAGACTTTATCATGGGGTGAAACGCGCC	TCCAGACTTTATCATGGGGTGAAACGCGCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	170948469	170948498	TCCAGACTTTATCATGGGGTGAAACGCGCC	-	DEL	MYO3B	NM_138995	human	genbank	54_36p	1	provisional	in_frame_del	c.1189_1218	p.RLYHGVKRAS398in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.990:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:0.993:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.988:0.993:0.997:0.997	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[170948466,170948570])"	no_errors
MYO3B	140469	broad.mit.edu	36	2	170957158	170957158	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	170957158	170957158	A	T	SNP	MYO3B	NM_138995	human	genbank	54_36p	1	provisional	silent	c.1698	p.G566	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO3B	140469	broad.mit.edu	36	2	170969051	170969051	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	170969051	170969051	G	C	SNP	MYO3B	NM_138995	human	genbank	54_36p	1	provisional	missense	c.2326	p.D776H	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO3B	140469	broad.mit.edu	36	2	171064420	171064420	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	171064420	171064420	C	G	SNP	MYO3B	NM_138995	human	genbank	54_36p	1	provisional	missense	c.3145	p.H1049D	1	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
GAD1	2571	broad.mit.edu	36	2	171395746	171395746	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	171395746	171395746	A	T	SNP	GAD1	NM_000817	human	genbank	54_36p	1	reviewed	missense	c.345	p.Q115H	1	superfamily_PLP-dependent transferases	"superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC"	-	no_errors
DLX2	1746	broad.mit.edu	36	2	172675253	172675253	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	172675253	172675253	A	T	SNP	DLX2	NM_004405	human	genbank	54_36p	-1	reviewed	missense	c.260	p.M87K	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PDK1	5163	broad.mit.edu	36	2	173137530	173137531	+	Missense_Mutation	DNP	CA	CA	AC	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	173137530	173137531	CA	AC	DNP	PDK1	NM_002610	human	genbank	54_36p	1	reviewed	missense	c.464_465	p.T155N	1.000:0.899	"superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3"	"superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387"	-	no_errors
SP3	6670	broad.mit.edu	36	2	174528838	174528838	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	174528838	174528838	G	A	SNP	SP3	NM_003111	human	genbank	54_36p	-1	reviewed	silent	c.648	p.A216	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
OLA1	29789	broad.mit.edu	36	2	174714837	174714837	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	174714837	174714837	C	G	SNP	OLA1	NM_013341	human	genbank	54_36p	-1	validated	missense	c.511	p.A171P	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1,HMMPfam_YchF-GTPase_C,superfamily_TGS-like"	-	no_errors
SCRN3	79634	broad.mit.edu	36	2	174977289	174977289	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	174977289	174977289	G	C	SNP	SCRN3	NM_024583	human	genbank	54_36p	1	validated	missense	c.754	p.G252R	1	NULL	NULL	-	no_errors
GPR155	151556	broad.mit.edu	36	2	175039537	175039537	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	175039537	175039537	G	C	SNP	GPR155	NM_001033045	human	genbank	54_36p	-1	validated	missense	c.1247	p.T416S	0.44	NULL	"HMMPfam_Mem_trans,superfamily_Winged helix DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP"	-	no_errors
WIPF1	7456	broad.mit.edu	36	2	175144666	175144666	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	175144666	175144666	G	T	SNP	WIPF1	NM_001077269	human	genbank	54_36p	-1	reviewed	missense	c.1113	p.D371E	0.55	NULL	"HMMPfam_WH2,HMMSmart_SM00246"	-	no_errors
WIPF1	7456	broad.mit.edu	36	2	175145134	175145134	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	175145134	175145134	G	A	SNP	WIPF1	NM_001077269	human	genbank	54_36p	-1	reviewed	silent	c.645	p.P215	0.03	NULL	"HMMPfam_WH2,HMMSmart_SM00246"	-	no_errors
CHRNA1	1134	broad.mit.edu	36	2	175326556	175326556	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	175326556	175326556	G	A	SNP	CHRNA1	NM_001039523	human	genbank	54_36p	-1	reviewed	silent	c.774	p.Y258	1	superfamily_Neurotransmitter-gated ion-channel transmembrane pore	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
CHRNA1	1134	broad.mit.edu	36	2	175327322	175327322	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	175327322	175327322	C	T	SNP	CHRNA1	NM_001039523	human	genbank	54_36p	-1	reviewed	silent	c.486	p.T162	0.02	"HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
KIAA1715	80856	broad.mit.edu	36	2	176512585	176512585	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	176512585	176512585	T	C	SNP	KIAA1715	NM_030650	human	genbank	54_36p	-1	validated	silent	c.753	p.R251	1	NULL	HMMPfam_DUF2296	-	no_errors
EVX2	344191	broad.mit.edu	36	2	176653723	176653723	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	176653723	176653723	G	T	SNP	EVX2	NM_001080458	human	genbank	54_36p	-1	provisional	nonsense	c.789	p.Y263*	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
EVX2	344191	broad.mit.edu	36	2	176656622	176656622	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	176656622	176656622	C	A	SNP	EVX2	NM_001080458	human	genbank	54_36p	-1	provisional	silent	c.129	p.S43	1	NULL	"HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1"	-	no_errors
HOXD12	3238	broad.mit.edu	36	2	176672933	176672933	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	176672933	176672933	C	A	SNP	HOXD12	ENST00000306412	human	ensembl	54_36p	1	known	missense	c.158	p.A53D	0.89	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXD10	3236	broad.mit.edu	36	2	176690444	176690444	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	176690444	176690444	G	A	SNP	HOXD10	NM_002148	human	genbank	54_36p	1	reviewed	missense	c.637	p.V213I	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
MTX2	10651	broad.mit.edu	36	2	176899855	176899855	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	176899855	176899855	G	A	SNP	MTX2	NM_006554	human	genbank	54_36p	1	reviewed	missense	c.265	p.V89I	1	HMMPfam_Tom37	"HMMPfam_Tom37,superfamily_GST_C_like"	-	no_errors
HNRNPA3	220988	broad.mit.edu	36	2	177790721	177790721	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	177790721	177790721	G	T	SNP	HNRNPA3	NM_194247	human	genbank	54_36p	1	validated	missense	c.863	p.G288V	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
AGPS	8540	broad.mit.edu	36	2	178010001	178010001	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	178010001	178010001	C	A	SNP	AGPS	NM_003659	human	genbank	54_36p	1	reviewed	silent	c.610	p.R204	1	superfamily_FAD-binding domain	"superfamily_FAD-binding domain,HMMPfam_FAD_binding_4,superfamily_FAD-linked oxidases C-terminal domain,HMMPfam_FAD-oxidase_C"	-	no_errors
PDE11A	50940	broad.mit.edu	36	2	178478154	178478154	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	178478154	178478154	G	T	SNP	PDE11A	NM_016953	human	genbank	54_36p	-1	reviewed	missense	c.1078	p.Q360K	1	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065"	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
RBM45	129831	broad.mit.edu	36	2	178691042	178691042	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	178691042	178691042	C	T	SNP	RBM45	NM_152945	human	genbank	54_36p	1	provisional	silent	c.438	p.I146	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD"	-	no_errors
FKBP7	51661	broad.mit.edu	36	2	179051426	179051426	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	179051426	179051426	T	A	SNP	FKBP7	NM_181342	human	genbank	54_36p	-1	reviewed	missense	c.47	p.Y16F	0	NULL	"superfamily_FKBP-like,HMMPfam_FKBP_C,superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
CCDC141	285025	broad.mit.edu	36	2	179409843	179409843	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179409843	179409843	G	A	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	missense	c.2623	p.P875S	0.01	NULL	HMMPfam_I-set	-	no_errors
CCDC141	285025	broad.mit.edu	36	2	179410662	179410662	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179410662	179410662	G	A	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	silent	c.1804	p.L602	0	NULL	HMMPfam_I-set	-	no_errors
CCDC141	285025	broad.mit.edu	36	2	179410667	179410667	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179410667	179410667	T	G	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	missense	c.1799	p.E600A	0.01	NULL	HMMPfam_I-set	-	no_errors
CCDC141	285025	broad.mit.edu	36	2	179441034	179441034	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179441034	179441034	G	T	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	silent	c.813	p.S271	0.2	NULL	HMMPfam_I-set	-	no_errors
SESTD1	91404	broad.mit.edu	36	2	179716695	179716695	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179716695	179716695	C	T	SNP	SESTD1	NM_178123	human	genbank	54_36p	-1	validated	missense	c.718	p.E240K	1	NULL	"superfamily_Spectrin,HMMSmart_SPEC"	-	no_errors
ZNF385B	151126	broad.mit.edu	36	2	180117812	180117812	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	180117812	180117812	G	C	SNP	ZNF385B	NM_152520	human	genbank	54_36p	-1	validated	missense	c.383	p.P128R	1	NULL	"HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ITGA4	3676	broad.mit.edu	36	2	182058900	182058900	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	182058900	182058900	A	T	SNP	ITGA4	NM_000885	human	genbank	54_36p	1	reviewed	missense	c.1089	p.K363N	1	superfamily_Integrin alpha N-terminal domain	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
CERKL	375298	broad.mit.edu	36	2	182112074	182112074	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	182112074	182112074	C	T	SNP	CERKL	NM_201548	human	genbank	54_36p	-1	validated	missense	c.1528	p.V510I	1	NULL	HMMPfam_DAGK_cat	-	no_errors
CERKL	375298	broad.mit.edu	36	2	182131603	182131603	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	182131603	182131603	C	G	SNP	CERKL	NM_201548	human	genbank	54_36p	-1	validated	missense	c.755	p.G252A	1	HMMPfam_DAGK_cat	HMMPfam_DAGK_cat	-	no_errors
NEUROD1	4760	broad.mit.edu	36	2	182251348	182251348	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	182251348	182251348	C	G	SNP	NEUROD1	NM_002500	human	genbank	54_36p	-1	reviewed	missense	c.485	p.S162T	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
NCKAP1	10787	broad.mit.edu	36	2	183498760	183498760	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	183498760	183498760	T	C	SNP	NCKAP1	NM_205842	human	genbank	54_36p	-1	validated	missense	c.3320	p.D1107G	1	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
ZNF804A	91752	broad.mit.edu	36	2	185508769	185508769	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	185508769	185508769	G	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	missense	c.401	p.G134D	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF804A	91752	broad.mit.edu	36	2	185509004	185509004	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	185509004	185509004	C	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	silent	c.636	p.I212	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF804A	91752	broad.mit.edu	36	2	185509018	185509018	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	185509018	185509018	C	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	missense	c.650	p.A217E	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF804A	91752	broad.mit.edu	36	2	185510677	185510677	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	185510677	185510677	G	A	SNP	ZNF804A	NM_194250	human	genbank	54_36p	1	provisional	missense	c.2309	p.R770Q	0.71	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ITGAV	3685	broad.mit.edu	36	2	187214440	187214440	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	187214440	187214440	G	C	SNP	ITGAV	NM_002210	human	genbank	54_36p	1	reviewed	missense	c.1039	p.V347L	0.32	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ITGAV	3685	broad.mit.edu	36	2	187225058	187225058	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	187225058	187225058	C	A	SNP	ITGAV	NM_002210	human	genbank	54_36p	1	reviewed	missense	c.1502	p.S501Y	1	"HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	"HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain"	-	no_errors
ZSWIM2	151112	broad.mit.edu	36	2	187401221	187401221	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	187401221	187401221	T	C	SNP	ZSWIM2	NM_182521	human	genbank	54_36p	-1	validated	missense	c.1637	p.K546R	0.02	NULL	"HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C3HC4"	-	no_errors
ZSWIM2	151112	broad.mit.edu	36	2	187421961	187421961	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	187421961	187421961	C	A	SNP	ZSWIM2	NM_182521	human	genbank	54_36p	-1	validated	nonsense	c.142	p.E48*	0.73	NULL	"HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_RING,HMMPfam_SWIM,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
CALCRL	10203	broad.mit.edu	36	2	187925271	187925271	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	187925271	187925271	C	T	SNP	CALCRL	NM_005795	human	genbank	54_36p	-1	validated	missense	c.943	p.V315I	1	HMMPfam_7tm_2	"superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
COL3A1	1281	broad.mit.edu	36	2	189563104	189563104	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	189563104	189563104	G	A	SNP	COL3A1	NM_000090	human	genbank	54_36p	1	reviewed	missense	c.728	p.G243E	1	HMMPfam_Collagen	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL3A1	1281	broad.mit.edu	36	2	189583827	189583827	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	189583827	189583827	A	G	SNP	COL3A1	NM_000090	human	genbank	54_36p	1	reviewed	missense	c.4220	p.K1407R	1	"HMMPfam_COLFI,HMMSmart_SM00038"	"HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen"	-	no_errors
COL5A2	1290	broad.mit.edu	36	2	189612490	189612490	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	189612490	189612490	A	C	SNP	COL5A2	NM_000393	human	genbank	54_36p	-1	reviewed	silent	c.3678	p.P1226	1	HMMPfam_Collagen	"HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI"	-	no_errors
COL5A2	1290	broad.mit.edu	36	2	189635838	189635838	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	189635838	189635838	G	A	SNP	COL5A2	NM_000393	human	genbank	54_36p	-1	reviewed	missense	c.1975	p.P659S	0.99	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_COLFI,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen"	-	no_errors
WDR75	84128	broad.mit.edu	36	2	190047719	190047719	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	190047719	190047719	C	G	SNP	WDR75	NM_032168	human	genbank	54_36p	1	provisional	missense	c.2228	p.S743C	1	NULL	"PatternScan_WD_REPEATS_1,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40"	-	no_errors
SLC40A1	30061	broad.mit.edu	36	2	190138503	190138503	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	190138503	190138503	C	G	SNP	SLC40A1	NM_014585	human	genbank	54_36p	-1	reviewed	missense	c.582	p.Q194H	1	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_FPN1"	-	no_errors
PMS1	5378	broad.mit.edu	36	2	190436884	190436884	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	190436884	190436884	C	G	SNP	PMS1	NM_000534	human	genbank	54_36p	1	reviewed	missense	c.2027	p.P676R	1	NULL	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_mis_repair,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
MFSD6	54842	broad.mit.edu	36	2	191009653	191009653	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	191009653	191009653	C	G	SNP	MFSD6	NM_017694	human	genbank	54_36p	1	validated	missense	c.653	p.P218R	0	superfamily_MFS_gen_substrate_transporter	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
MYO1B	4430	broad.mit.edu	36	2	191969465	191969465	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	191969465	191969465	G	C	SNP	MYO1B	NM_012223	human	genbank	54_36p	1	validated	missense	c.2292	p.W764C	1	"HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_TH1,superfamily_SSF52540"	-	no_errors
DNAH7	56171	broad.mit.edu	36	2	196369690	196369690	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	196369690	196369690	T	A	SNP	DNAH7	NM_018897	human	genbank	54_36p	-1	validated	missense	c.10370	p.K3457I	0.92	"HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT"	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT"	-	no_errors
DNAH7	56171	broad.mit.edu	36	2	196448711	196448711	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	196448711	196448711	A	G	SNP	DNAH7	NM_018897	human	genbank	54_36p	-1	validated	silent	c.6219	p.Y2073	1	"HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"PatternScan_ADH_SHORT,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,PatternScan_EF_HAND_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HECW2	57520	broad.mit.edu	36	2	196892764	196892764	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	196892764	196892764	C	G	SNP	HECW2	NM_020760	human	genbank	54_36p	-1	provisional	missense	c.1095	p.Q365H	0	NULL	"HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
GTF3C3	9330	broad.mit.edu	36	2	197348106	197348106	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	197348106	197348106	A	G	SNP	GTF3C3	NM_012086	human	genbank	54_36p	-1	provisional	missense	c.1810	p.S604P	0.91	superfamily_TPR-like	"HMMSmart_SM00028,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
GTF3C3	9330	broad.mit.edu	36	2	197372488	197372488	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	197372488	197372488	G	C	SNP	GTF3C3	NM_012086	human	genbank	54_36p	-1	provisional	silent	c.93	p.R31	1	NULL	"HMMPfam_TPR_1,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_Protein prenylyltransferase,superfamily_TPR-like"	-	no_errors
C2orf66	401027	broad.mit.edu	36	2	197380523	197380523	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	197380523	197380523	G	A	SNP	C2orf66	NM_213608	human	genbank	54_36p	-1	predicted	silent	c.243	p.F81	0.96	NULL	NULL	-	no_errors
PGAP1	80055	broad.mit.edu	36	2	197420956	197420956	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	197420956	197420956	T	C	SNP	PGAP1	NM_024989	human	genbank	54_36p	-1	validated	missense	c.1912	p.K638E	1	NULL	"HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases"	-	no_errors
ANKRD44	91526	broad.mit.edu	36	2	197586552	197586552	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	197586552	197586552	C	G	SNP	ANKRD44	NM_153697	human	genbank	54_36p	-1	provisional	missense	c.1777	p.A593P	0.91	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKRD44	91526	broad.mit.edu	36	2	197659661	197659661	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	197659661	197659661	T	A	SNP	ANKRD44	NM_153697	human	genbank	54_36p	-1	provisional	missense	c.1229	p.D410V	1	"HMMPfam_Ank,superfamily_ANK"	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
SF3B1	23451	broad.mit.edu	36	2	197966064	197966064	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	197966064	197966064	C	T	SNP	SF3B1	NM_012433	human	genbank	54_36p	-1	reviewed	silent	c.3633	p.L1211	1	superfamily_ARM repeat	"HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
MOBKL3	25843	broad.mit.edu	36	2	198089100	198089100	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	198089100	198089100	G	A	SNP	MOBKL3	NM_015387	human	genbank	54_36p	1	reviewed	silent	c.45	p.P15	1	NULL	"HMMPfam_Mob1_phocein,superfamily_Mob1/phocein"	-	no_errors
MARS2	92935	broad.mit.edu	36	2	198279265	198279265	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	198279265	198279265	C	G	SNP	MARS2	NM_138395	human	genbank	54_36p	1	validated	missense	c.891	p.F297L	0.14	"superfamily_SSF52374,HMMPfam_tRNA-synt_1g"	"PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF52374,HMMPfam_tRNA-synt_1g,superfamily_tRNAsyn_1a_bind"	-	no_errors
MARS2	92935	broad.mit.edu	36	2	198279444	198279444	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	198279444	198279444	A	C	SNP	MARS2	NM_138395	human	genbank	54_36p	1	validated	missense	c.1070	p.D357A	1	"HMMPfam_tRNA-synt_1g,superfamily_SSF52374"	"PatternScan_AA_TRNA_LIGASE_I,superfamily_tRNAsyn_1a_bind,HMMPfam_tRNA-synt_1g,superfamily_SSF52374"	-	no_errors
MARS2	92935	broad.mit.edu	36	2	198279841	198279841	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	198279841	198279841	G	T	SNP	MARS2	NM_138395	human	genbank	54_36p	1	validated	missense	c.1467	p.R489S	1	superfamily_tRNAsyn_1a_bind	"PatternScan_AA_TRNA_LIGASE_I,superfamily_tRNAsyn_1a_bind,HMMPfam_tRNA-synt_1g,superfamily_SSF52374"	-	no_errors
BOLL	66037	broad.mit.edu	36	2	198348711	198348711	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	198348711	198348711	T	G	SNP	BOLL	NM_197970	human	genbank	54_36p	-1	validated	splice_site	c.313-2	e5-2	1	-	-	-	no_errors
PLCL1	5334	broad.mit.edu	36	2	198658277	198658277	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	198658277	198658277	C	T	SNP	PLCL1	NM_006226	human	genbank	54_36p	1	provisional	silent	c.1497	p.Y499	1	"superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SPATS2L	26010	broad.mit.edu	36	2	201050854	201050854	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	201050854	201050854	G	C	SNP	LOC26010	NM_001100422	human	genbank	54_36p	1	validated	missense	c.1532	p.R511T	1	NULL	HMMPfam_DUF1387	-	no_errors
KCTD18	130535	broad.mit.edu	36	2	201079890	201079890	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	201079890	201079890	C	A	SNP	KCTD18	NM_152387	human	genbank	54_36p	-1	validated	missense	c.95	p.R32L	1	"superfamily_POZ domain,HMMPfam_K_tetra"	"superfamily_POZ domain,HMMPfam_K_tetra"	-	no_errors
SGOL2	151246	broad.mit.edu	36	2	201145883	201145883	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	201145883	201145883	C	G	SNP	SGOL2	NM_152524	human	genbank	54_36p	1	provisional	missense	c.2569	p.Q857E	0	NULL	HMMPfam_Shugoshin_N	-	no_errors
SGOL2	151246	broad.mit.edu	36	2	201146632	201146632	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	201146632	201146632	G	T	SNP	SGOL2	NM_152524	human	genbank	54_36p	1	provisional	missense	c.3318	p.K1106N	0	NULL	HMMPfam_Shugoshin_N	-	no_errors
AOX1	316	broad.mit.edu	36	2	201235890	201235890	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	201235890	201235890	G	A	SNP	AOX1	NM_001159	human	genbank	54_36p	1	reviewed	missense	c.3496	p.A1166T	1	"superfamily_Molybdenum cofactor-binding domain,HMMPfam_Ald_Xan_dh_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
CLK1	1195	broad.mit.edu	36	2	201430821	201430821	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	201430821	201430821	G	T	SNP	CLK1	NM_004071	human	genbank	54_36p	-1	reviewed	missense	c.697	p.H233N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ALS2CR12	130540	broad.mit.edu	36	2	201917201	201917201	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	201917201	201917201	T	G	SNP	ALS2CR12	NM_139163	human	genbank	54_36p	-1	validated	missense	c.399	p.Q133H	0.95	NULL	NULL	-	no_errors
ALS2CR12	130540	broad.mit.edu	36	2	201917226	201917226	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	201917226	201917226	T	A	SNP	ALS2CR12	NM_139163	human	genbank	54_36p	-1	validated	missense	c.374	p.N125I	0.38	NULL	NULL	-	no_errors
TRAK2	66008	broad.mit.edu	36	2	201953923	201953923	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	201953923	201953923	G	A	SNP	TRAK2	NM_015049	human	genbank	54_36p	-1	validated	missense	c.2333	p.P778L	1	NULL	HMMPfam_HAP1_N	-	no_errors
MPP4	58538	broad.mit.edu	36	2	202248210	202248210	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	202248210	202248210	G	A	SNP	MPP4	NM_033066	human	genbank	54_36p	-1	reviewed	missense	c.959	p.P320L	1	superfamily_SH3-domain	###############################################################################################################################################################################################################################################################	-	no_errors
ALS2	57679	broad.mit.edu	36	2	202306340	202306340	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	202306340	202306340	C	T	SNP	ALS2	NM_020919	human	genbank	54_36p	-1	reviewed	silent	c.2484	p.Q828	0.06	superfamily_DBL homology domain (DH-domain)	###############################################################################################################################################################################################################################################################	-	no_errors
FZD7	8324	broad.mit.edu	36	2	202608783	202608783	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	202608783	202608783	G	A	SNP	FZD7	NM_003507	human	genbank	54_36p	1	reviewed	missense	c.1168	p.A390T	1	HMMPfam_Frizzled	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled"	-	no_errors
BMPR2	659	broad.mit.edu	36	2	203129284	203129284	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	203129284	203129284	T	C	SNP	BMPR2	NM_001204	human	genbank	54_36p	1	reviewed	missense	c.2651	p.L884P	1	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_SSF57302,HMMPfam_Activin_recp,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
NBEAL1	65065	broad.mit.edu	36	2	203709031	203709031	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	203709031	203709031	G	C	SNP	NBEAL1	NM_001099273	human	genbank	54_36p	1	validated	missense	c.243	p.L81F	1	NULL	"superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
CYP20A1	57404	broad.mit.edu	36	2	203851653	203851653	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	203851653	203851653	A	G	SNP	CYP20A1	NM_177538	human	genbank	54_36p	1	reviewed	silent	c.792	p.Q264	0.99	superfamily_Cytochrome_P450	"superfamily_Cytochrome_P450,HMMPfam_p450"	-	no_errors
RAPH1	65059	broad.mit.edu	36	2	204013183	204013183	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	2	204013183	204013183	G	A	SNP	RAPH1	NM_213589	human	genbank	54_36p	-1	validated	missense	c.2975	p.P992L	1	NULL	"HMMSmart_SM00314,HMMPfam_RA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
RAPH1	65059	broad.mit.edu	36	2	204014379	204014379	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	204014379	204014379	G	T	SNP	RAPH1	NM_213589	human	genbank	54_36p	-1	validated	silent	c.1779	p.A593	1	NULL	"HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
PARD3B	117583	broad.mit.edu	36	2	206188590	206188590	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	206188590	206188590	C	G	SNP	PARD3B	NM_152526	human	genbank	54_36p	1	validated	missense	c.3240	p.H1080Q	1	NULL	"superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
NRP2	8828	broad.mit.edu	36	2	206300889	206300889	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	206300889	206300889	G	A	SNP	NRP2	NM_201266	human	genbank	54_36p	1	reviewed	silent	c.1020	p.T340	0.92	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM"	-	no_errors
INO80D	54891	broad.mit.edu	36	2	206577423	206577423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	206577423	206577423	T	C	SNP	INO80D	NM_017759	human	genbank	54_36p	-1	validated	missense	c.2998	p.I1000V	1	NULL	NULL	-	no_errors
INO80D	54891	broad.mit.edu	36	2	206577799	206577799	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	206577799	206577799	G	T	SNP	INO80D	NM_017759	human	genbank	54_36p	-1	validated	silent	c.2622	p.T874	0.91	NULL	NULL	-	no_errors
INO80D	54891	broad.mit.edu	36	2	206635892	206635892	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	206635892	206635892	C	T	SNP	INO80D	NM_017759	human	genbank	54_36p	-1	validated	missense	c.94	p.G32S	1	NULL	NULL	-	no_errors
ZDBF2	57683	broad.mit.edu	36	2	206878193	206878193	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	206878193	206878193	T	C	SNP	ZDBF2	NM_020923	human	genbank	54_36p	1	validated	silent	c.696	p.D232	0	NULL	HMMPfam_zf-DBF	-	no_errors
ZDBF2	57683	broad.mit.edu	36	2	206880751	206880751	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	206880751	206880751	A	G	SNP	ZDBF2	NM_020923	human	genbank	54_36p	1	validated	missense	c.3254	p.E1085G	0	NULL	HMMPfam_zf-DBF	-	no_errors
ADAM23	8745	broad.mit.edu	36	2	207146159	207146159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	207146159	207146159	G	A	SNP	ADAM23	NM_003812	human	genbank	54_36p	1	reviewed	missense	c.1732	p.G578S	1	"HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)"	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_1,HMMPfam_EGF_2,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
DYTN	391475	broad.mit.edu	36	2	207224851	207224851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	207224851	207224851	G	A	SNP	DYTN	NM_001093730	human	genbank	54_36p	-1	provisional	missense	c.1673	p.A558V	0.5	NULL	"HMMPfam_efhand_1,superfamily_SSF47473,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
MDH1B	130752	broad.mit.edu	36	2	207322086	207322086	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	207322086	207322086	T	C	SNP	MDH1B	NM_001039845	human	genbank	54_36p	-1	validated	silent	c.1119	p.G373	0.75	superfamily_LDH C-terminal domain-like	"superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_LDH C-terminal domain-like"	-	no_errors
MDH1B	130752	broad.mit.edu	36	2	207328020	207328021	+	Missense_Mutation	DNP	CT	CT	TA	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	207328020	207328021	CT	TA	DNP	MDH1B	NM_001039845	human	genbank	54_36p	-1	validated	missense	c.868_867	p.EA289DT	1.000:0.993	NULL	"superfamily_LDH C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
MDH1B	130752	broad.mit.edu	36	2	207330303	207330303	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	207330303	207330303	C	G	SNP	MDH1B	NM_001039845	human	genbank	54_36p	-1	validated	missense	c.173	p.S58T	0.9	NULL	"superfamily_LDH C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
FASTKD2	22868	broad.mit.edu	36	2	207344916	207344916	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	207344916	207344916	G	A	SNP	FASTKD2	NM_014929	human	genbank	54_36p	1	reviewed	missense	c.1044	p.M348I	1	NULL	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
FASTKD2	22868	broad.mit.edu	36	2	207344979	207344979	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	207344979	207344979	G	C	SNP	FASTKD2	NM_014929	human	genbank	54_36p	1	reviewed	silent	c.1107	p.V369	0.01	NULL	"HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP"	-	no_errors
CPO	130749	broad.mit.edu	36	2	207512599	207512599	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	207512599	207512599	T	C	SNP	CPO	NM_173077	human	genbank	54_36p	1	validated	silent	c.31	p.L11	0.47	NULL	"PatternScan_CARBOXYPEPT_ZN_2,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1"	-	no_errors
FZD5	7855	broad.mit.edu	36	2	208340364	208340364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	208340364	208340364	G	A	SNP	FZD5	NM_003468	human	genbank	54_36p	-1	reviewed	missense	c.1345	p.R449C	1	HMMPfam_Frizzled	"HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI,HMMPfam_Frizzled"	-	no_errors
FZD5	7855	broad.mit.edu	36	2	208340499	208340499	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	208340499	208340499	C	A	SNP	FZD5	NM_003468	human	genbank	54_36p	-1	reviewed	missense	c.1210	p.V404L	1	HMMPfam_Frizzled	"superfamily_Frizzled_Cys-rich,HMMPfam_Frizzled,HMMPfam_Fz,HMMSmart_FRI"	-	no_errors
PLEKHM3	389072	broad.mit.edu	36	2	208550482	208550482	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	208550482	208550482	C	T	SNP	PLEKHM3	NM_001080475	human	genbank	54_36p	-1	validated	nonsense	c.684	p.W228*	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PIKFYVE	200576	broad.mit.edu	36	2	208903598	208903598	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	208903598	208903598	G	A	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	missense	c.3898	p.D1300N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PIKFYVE	200576	broad.mit.edu	36	2	208908841	208908841	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	208908841	208908841	A	T	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	nonsense	c.4336	p.K1446*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PIKFYVE	200576	broad.mit.edu	36	2	208926972	208926972	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	208926972	208926972	C	T	SNP	PIP5K3	NM_015040	human	genbank	54_36p	1	validated	nonsense	c.5950	p.R1984*	1	"HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like"	###############################################################################################################################################################################################################################################################	-	no_errors
PTH2R	5746	broad.mit.edu	36	2	209066555	209066555	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	209066555	209066555	G	C	SNP	PTH2R	NM_005048	human	genbank	54_36p	1	reviewed	missense	c.1579	p.E527Q	0	NULL	"superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF81321,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210226198	210226198	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	210226198	210226198	C	A	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	missense	c.59	p.T20K	0.84	NULL	"HMMPfam_RII_binding_1,HMMPfam_MAP2_projctn,HMMPfam_Tubulin-binding,PatternScan_TAU_MAP"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210226239	210226239	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	210226239	210226239	C	A	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	missense	c.100	p.Q34K	1	NULL	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210226373	210226373	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	210226373	210226373	G	A	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	silent	c.234	p.E78	1	NULL	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210267400	210267400	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	210267400	210267400	A	G	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	missense	c.2261	p.E754G	1	HMMPfam_MAP2_projctn	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210267648	210267648	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	210267648	210267648	G	C	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	missense	c.2509	p.E837Q	0.84	HMMPfam_MAP2_projctn	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210268820	210268820	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	210268820	210268820	T	A	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	silent	c.3681	p.S1227	0	HMMPfam_MAP2_projctn	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210269925	210269925	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	210269925	210269925	T	C	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	missense	c.4427	p.V1476A	1	HMMPfam_MAP2_projctn	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210278593	210278593	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	210278593	210278593	A	G	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	silent	c.4629	p.R1543	1	NULL	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
MAP2	4133	broad.mit.edu	36	2	210283183	210283183	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	210283183	210283183	G	C	SNP	MAP2	NM_002374	human	genbank	54_36p	1	reviewed	missense	c.5033	p.G1678A	1	HMMPfam_Tubulin-binding	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP,HMMPfam_MAP2_projctn,HMMPfam_RII_binding_1"	-	no_errors
UNC80	285175	broad.mit.edu	36	2	210362534	210362534	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	210362534	210362534	G	A	SNP	C2orf21	NM_182587	human	genbank	54_36p	1	validated	missense	c.758	p.R253Q	1	NULL	NULL	-	no_errors
C2orf67	151050	broad.mit.edu	36	2	210597005	210597005	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	210597005	210597005	G	C	SNP	C2orf67	NM_152519	human	genbank	54_36p	-1	validated	silent	c.2730	p.T910	0.93	NULL	NULL	-	no_errors
C2orf67	151050	broad.mit.edu	36	2	210601925	210601925	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	210601925	210601925	C	T	SNP	C2orf67	NM_152519	human	genbank	54_36p	-1	validated	missense	c.2285	p.R762Q	1	NULL	NULL	-	no_errors
C2orf67	151050	broad.mit.edu	36	2	210648569	210648569	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	210648569	210648569	G	C	SNP	C2orf67	NM_152519	human	genbank	54_36p	-1	validated	missense	c.1707	p.H569Q	1	NULL	NULL	-	no_errors
CPS1	1373	broad.mit.edu	36	2	211164907	211164907	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	T	T	-	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	211164907	211164907	T	-	DEL	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1055	p.F353fs	1	"superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[211164800,211164938])"	no_errors
CPS1	1373	broad.mit.edu	36	2	211175180	211175180	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	211175180	211175180	G	T	SNP	CPS1	NM_001875	human	genbank	54_36p	1	reviewed	missense	c.1717	p.A573S	1	"HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ABCA12	26154	broad.mit.edu	36	2	215515967	215515967	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	215515967	215515967	G	C	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	missense	c.7363	p.L2455V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA12	26154	broad.mit.edu	36	2	215551883	215551883	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	215551883	215551883	A	G	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	missense	c.4867	p.F1623L	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA12	26154	broad.mit.edu	36	2	215553475	215553475	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	215553475	215553475	G	A	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	missense	c.4717	p.H1573Y	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA12	26154	broad.mit.edu	36	2	215560750	215560750	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	215560750	215560750	A	G	SNP	ABCA12	NM_173076	human	genbank	54_36p	-1	reviewed	missense	c.3842	p.M1281T	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ATIC	471	broad.mit.edu	36	2	215885547	215885547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	215885547	215885547	C	T	SNP	ATIC	NM_004044	human	genbank	54_36p	1	validated	missense	c.101	p.S34F	0.98	"superfamily_SSF52335,HMMPfam_MGS"	"superfamily_SSF52335,HMMPfam_MGS,HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly"	-	no_errors
FN1	2335	broad.mit.edu	36	2	215943354	215943354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	215943354	215943354	G	C	SNP	FN1	NM_212482	human	genbank	54_36p	-1	reviewed	missense	c.6761	p.T2254S	1	"HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3"	###############################################################################################################################################################################################################################################################	-	no_errors
TMEM169	92691	broad.mit.edu	36	2	216669098	216669098	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	216669098	216669098	G	A	SNP	TMEM169	NM_138390	human	genbank	54_36p	1	validated	missense	c.167	p.R56H	1	NULL	NULL	-	no_errors
MARCH4	57574	broad.mit.edu	36	2	216850783	216850783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	216850783	216850783	G	C	SNP	MARCH4	NM_020814	human	genbank	54_36p	-1	validated	missense	c.722	p.A241G	1	NULL	"HMMSmart_RINGv,HMMPfam_zf-C3HC4"	-	no_errors
SMARCAL1	50485	broad.mit.edu	36	2	217040996	217040996	+	Silent	SNP	G	G	A	rs2271335	by-hapmap	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	217040996	217040996	G	A	SNP	SMARCAL1	NM_014140	human	genbank	54_36p	1	reviewed	silent	c.2226	p.T742	0	"superfamily_SSF52540,HMMSmart_HELICc"	"HMMPfam_HARP,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
TNS1	7145	broad.mit.edu	36	2	218386664	218386664	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	218386664	218386664	T	C	SNP	TNS1	NM_022648	human	genbank	54_36p	-1	reviewed	missense	c.4538	p.Q1513R	1	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	"superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB"	-	no_errors
PNKD	25953	broad.mit.edu	36	2	218916522	218916522	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	218916522	218916522	G	T	SNP	PNKD	NM_015488	human	genbank	54_36p	1	validated	silent	c.837	p.L279	0.92	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B"	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B"	-	no_errors
SLC11A1	6556	broad.mit.edu	36	2	218966068	218966068	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	218966068	218966068	G	A	SNP	SLC11A1	NM_000578	human	genbank	54_36p	1	reviewed	missense	c.1285	p.D429N	1	HMMPfam_Nramp	HMMPfam_Nramp	-	no_errors
VIL1	7429	broad.mit.edu	36	2	219002836	219002836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	219002836	219002836	G	A	SNP	VIL1	NM_007127	human	genbank	54_36p	1	reviewed	silent	c.870	p.Q290	0.99	"superfamily_SSF82754,HMMSmart_GEL,HMMPfam_Gelsolin"	"superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF82754,superfamily_VHP,HMMPfam_VHP,HMMSmart_VHP"	-	no_errors
USP37	57695	broad.mit.edu	36	2	219032778	219032778	+	Silent	SNP	C	C	T	rs71415835	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219032778	219032778	C	T	SNP	USP37	NM_020935	human	genbank	54_36p	-1	validated	silent	c.2622	p.E874	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,HMMSmart_SM00726,HMMPfam_UIM,PatternScan_UCH_2_2"	-	no_errors
USP37	57695	broad.mit.edu	36	2	219107665	219107665	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	219107665	219107665	T	A	SNP	USP37	NM_020935	human	genbank	54_36p	-1	validated	missense	c.689	p.K230M	1	NULL	"HMMPfam_UCH,HMMPfam_UIM,HMMSmart_SM00726,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
RQCD1	9125	broad.mit.edu	36	2	219155997	219155997	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219155997	219155997	C	A	SNP	RQCD1	NM_005444	human	genbank	54_36p	1	provisional	missense	c.264	p.N88K	1	"superfamily_ARM repeat,HMMPfam_Rcd1"	"superfamily_ARM repeat,HMMPfam_Rcd1"	-	no_errors
PLCD4	84812	broad.mit.edu	36	2	219206695	219206695	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	219206695	219206695	G	A	SNP	PLCD4	NM_032726	human	genbank	54_36p	1	provisional	missense	c.1573	p.E525K	1	"superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149"	###############################################################################################################################################################################################################################################################	-	no_errors
ZNF142	7701	broad.mit.edu	36	2	219217803	219217803	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219217803	219217803	C	G	SNP	ZNF142	NM_001105537	human	genbank	54_36p	-1	validated	silent	c.1680	p.L560	1	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF142	7701	broad.mit.edu	36	2	219222123	219222123	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	219222123	219222123	T	C	SNP	ZNF142	NM_001105537	human	genbank	54_36p	-1	validated	missense	c.752	p.D251G	1	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
STK36	27148	broad.mit.edu	36	2	219267522	219267522	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	219267522	219267522	G	T	SNP	STK36	NM_015690	human	genbank	54_36p	1	validated	missense	c.2431	p.G811C	0.99	superfamily_ARM repeat	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
TTLL4	9654	broad.mit.edu	36	2	219311967	219311967	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219311967	219311967	G	T	SNP	TTLL4	NM_014640	human	genbank	54_36p	1	validated	missense	c.1324	p.D442Y	0	NULL	"HMMPfam_TTL,superfamily_SSF56059"	-	no_errors
TTLL4	9654	broad.mit.edu	36	2	219324711	219324711	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219324711	219324711	G	A	SNP	TTLL4	NM_014640	human	genbank	54_36p	1	validated	missense	c.2914	p.E972K	0.05	NULL	"HMMPfam_TTL,superfamily_SSF56059"	-	no_errors
TTLL4	9654	broad.mit.edu	36	2	219325777	219325777	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	219325777	219325777	G	T	SNP	TTLL4	NM_014640	human	genbank	54_36p	1	validated	silent	c.3024	p.R1008	0.97	NULL	"HMMPfam_TTL,superfamily_SSF56059"	-	no_errors
CYP27A1	1593	broad.mit.edu	36	2	219385950	219385950	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	219385950	219385950	C	T	SNP	CYP27A1	NM_000784	human	genbank	54_36p	1	reviewed	missense	c.904	p.P302S	0.36	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
PRKAG3	53632	broad.mit.edu	36	2	219400225	219400225	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219400225	219400225	G	C	SNP	PRKAG3	NM_017431	human	genbank	54_36p	-1	reviewed	missense	c.991	p.L331V	1	"HMMPfam_CBS,superfamily_CBS-domain,HMMSmart_SM00116"	"superfamily_CBS-domain,HMMPfam_CBS,HMMSmart_SM00116"	-	no_errors
WNT6	7475	broad.mit.edu	36	2	219444537	219444537	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219444537	219444537	C	A	SNP	WNT6	NM_006522	human	genbank	54_36p	1	reviewed	missense	c.388	p.L130M	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
WNT6	7475	broad.mit.edu	36	2	219446779	219446779	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219446779	219446779	C	T	SNP	WNT6	NM_006522	human	genbank	54_36p	1	reviewed	missense	c.1066	p.R356C	1	"HMMPfam_wnt,HMMSmart_WNT1"	"HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1"	-	no_errors
FAM134A	79137	broad.mit.edu	36	2	219753079	219753079	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219753079	219753079	G	C	SNP	FAM134A	NM_024293	human	genbank	54_36p	1	validated	missense	c.423	p.E141D	1	NULL	NULL	-	no_errors
ABCB6	10058	broad.mit.edu	36	2	219791287	219791287	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	219791287	219791287	C	G	SNP	ABCB6	NM_005689	human	genbank	54_36p	-1	reviewed	missense	c.353	p.G118A	0.66	NULL	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ANKZF1	55139	broad.mit.edu	36	2	219806811	219806811	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219806811	219806811	G	T	SNP	ANKZF1	NM_001042410	human	genbank	54_36p	1	validated	missense	c.950	p.G317V	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ANKZF1	55139	broad.mit.edu	36	2	219808085	219808085	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	219808085	219808085	G	C	SNP	ANKZF1	NM_001042410	human	genbank	54_36p	1	validated	missense	c.1498	p.A500P	0.9	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
GLB1L	79411	broad.mit.edu	36	2	219811305	219811305	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	219811305	219811305	T	G	SNP	GLB1L	NM_024506	human	genbank	54_36p	-1	provisional	missense	c.1252	p.T418P	1	NULL	"HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases"	-	no_errors
PTPRN	5798	broad.mit.edu	36	2	219874666	219874666	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	219874666	219874666	C	A	SNP	PTPRN	NM_002846	human	genbank	54_36p	-1	reviewed	silent	c.1014	p.L338	0.9	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
ACCN4	55515	broad.mit.edu	36	2	220111012	220111012	+	Nonstop_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	220111012	220111012	G	T	SNP	ACCN4	NM_018674	human	genbank	54_36p	1	reviewed	nonstop	c.2001	p.*667Y	0.99	NULL	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
CHPF	79586	broad.mit.edu	36	2	220113991	220113992	+	Missense_Mutation	DNP	GG	GG	AT	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	220113991	220113992	GG	AT	DNP	CHPF	NM_024536	human	genbank	54_36p	-1	validated	missense	c.989_988	p.P330I	1.000:1.000	HMMPfam_CHGN	HMMPfam_CHGN	-	no_errors
TMEM198	130612	broad.mit.edu	36	2	220120642	220120642	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	220120642	220120642	G	T	SNP	TMEM198	NM_001005209	human	genbank	54_36p	1	provisional	missense	c.337	p.V113L	1	NULL	NULL	-	no_errors
OBSL1	23363	broad.mit.edu	36	2	220129621	220129621	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	220129621	220129621	A	C	SNP	OBSL1	NM_015311	human	genbank	54_36p	-1	provisional	missense	c.4135	p.F1379V	1	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_ig,HMMPfam_fn3,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_V-set"	-	no_errors
SLC4A3	6508	broad.mit.edu	36	2	220205295	220205295	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	220205295	220205295	G	A	SNP	SLC4A3	NM_201574	human	genbank	54_36p	1	validated	missense	c.1109	p.R370H	1	superfamily_Phoshotransferase/anion transport protein	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2"	-	no_errors
PAX3	5077	broad.mit.edu	36	2	222793186	222793186	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	222793186	222793186	A	C	SNP	PAX3	NM_181459	human	genbank	54_36p	-1	reviewed	missense	c.1090	p.S364A	1	NULL	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PAX3	5077	broad.mit.edu	36	2	222866714	222866714	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	222866714	222866714	G	T	SNP	PAX3	NM_013942	human	genbank	54_36p	-1	reviewed	missense	c.593	p.A198D	0.56	NULL	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1"	-	no_errors
PAX3	5077	broad.mit.edu	36	2	222868567	222868567	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	222868567	222868567	G	C	SNP	PAX3	NM_181459	human	genbank	54_36p	-1	reviewed	missense	c.375	p.N125K	1	"HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
SGPP2	130367	broad.mit.edu	36	2	223047552	223047552	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	223047552	223047552	G	A	SNP	SGPP2	NM_152386	human	genbank	54_36p	1	provisional	missense	c.241	p.V81M	1	NULL	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014"	-	no_errors
FARSB	10056	broad.mit.edu	36	2	223173002	223173002	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	223173002	223173002	T	G	SNP	FARSB	NM_005687	human	genbank	54_36p	-1	reviewed	missense	c.1507	p.N503H	1	superfamily_Class II aaRS and biotin synthetases	"superfamily_Putative DNA-binding domain,HMMPfam_B3_4,superfamily_B3/B4 domain of PheRS PheT,HMMPfam_B5,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
ACSL3	2181	broad.mit.edu	36	2	223494251	223494251	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	223494251	223494251	C	A	SNP	ACSL3	NM_004457	human	genbank	54_36p	1	reviewed	missense	c.815	p.P272H	0	"superfamily_SSF56801,HMMPfam_AMP-binding"	"superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
ACSL3	2181	broad.mit.edu	36	2	223507617	223507617	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	223507617	223507617	T	C	SNP	ACSL3	NM_004457	human	genbank	54_36p	1	reviewed	missense	c.1973	p.V658A	1	superfamily_SSF56801	"HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801"	-	no_errors
KCNE4	23704	broad.mit.edu	36	2	223625895	223625895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	223625895	223625895	G	A	SNP	KCNE4	NM_080671	human	genbank	54_36p	1	validated	missense	c.103	p.E35K	1	HMMPfam_ISK_Channel	HMMPfam_ISK_Channel	-	no_errors
SCG2	7857	broad.mit.edu	36	2	224170895	224170895	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	224170895	224170895	C	T	SNP	SCG2	NM_003469	human	genbank	54_36p	-1	reviewed	silent	c.1350	p.T450	0	HMMPfam_Granin	"HMMPfam_Granin,PatternScan_GRANINS_1"	-	no_errors
FAM124B	79843	broad.mit.edu	36	2	224974366	224974366	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	224974366	224974366	G	A	SNP	FAM124B	NM_024785	human	genbank	54_36p	-1	validated	nonsense	c.364	p.Q122*	0.97	NULL	NULL	-	no_errors
CUL3	8452	broad.mit.edu	36	2	225108593	225108593	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	225108593	225108593	C	G	SNP	CUL3	NM_003590	human	genbank	54_36p	-1	validated	missense	c.274	p.D92H	1	"superfamily_Cullin repeat,HMMPfam_Cullin"	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_Winged helix DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors
DOCK10	55619	broad.mit.edu	36	2	225347989	225347989	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	225347989	225347989	G	A	SNP	DOCK10	NM_014689	human	genbank	54_36p	-1	validated	missense	c.5890	p.R1964W	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto"	-	no_errors
IRS1	3667	broad.mit.edu	36	2	227368238	227368238	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	227368238	227368238	C	A	SNP	IRS1	NM_005544	human	genbank	54_36p	-1	validated	missense	c.3461	p.G1154V	0.54	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
IRS1	3667	broad.mit.edu	36	2	227371331	227371332	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	227371331	227371332	CC	TT	DNP	IRS1	NM_005544	human	genbank	54_36p	-1	validated	missense	c.368_367	p.G123K	0.043:0.105	NULL	"HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729"	-	no_errors
COL4A4	1286	broad.mit.edu	36	2	227580318	227580318	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	227580318	227580318	G	T	SNP	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	silent	c.5040	p.I1680	1	"superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111"	"HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like"	-	no_errors
COL4A4	1286	broad.mit.edu	36	2	227606426	227606426	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	227606426	227606426	G	A	SNP	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	missense	c.3521	p.P1174L	0.66	HMMPfam_Collagen	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A4	1286	broad.mit.edu	36	2	227651005	227651005	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	227651005	227651005	T	C	SNP	COL4A4	NM_000092	human	genbank	54_36p	-1	reviewed	silent	c.1836	p.K612	0.18	NULL	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A3	1285	broad.mit.edu	36	2	227855409	227855409	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	227855409	227855409	C	T	SNP	COL4A3	NM_000091	human	genbank	54_36p	1	reviewed	missense	c.2573	p.P858L	1	NULL	"HMMPfam_Collagen,PatternScan_CARBOXYPEPT_SER_SER,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111"	-	no_errors
SLC19A3	80704	broad.mit.edu	36	2	228272329	228272329	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	228272329	228272329	C	A	SNP	SLC19A3	NM_025243	human	genbank	54_36p	-1	validated	missense	c.346	p.V116F	0.99	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Folate_carrier"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Folate_carrier"	-	no_errors
SPHKAP	80309	broad.mit.edu	36	2	228563965	228563965	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	228563965	228563965	C	G	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	missense	c.4867	p.E1623Q	1	HMMPfam_AKAP_110	HMMPfam_AKAP_110	-	no_errors
SPHKAP	80309	broad.mit.edu	36	2	228564127	228564127	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	228564127	228564127	G	T	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	missense	c.4705	p.P1569T	0	NULL	HMMPfam_AKAP_110	-	no_errors
SPHKAP	80309	broad.mit.edu	36	2	228589653	228589653	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	228589653	228589653	C	T	SNP	SPHKAP	NM_030623	human	genbank	54_36p	-1	validated	silent	c.4161	p.L1387	0.02	NULL	HMMPfam_AKAP_110	-	no_errors
DNER	92737	broad.mit.edu	36	2	229939884	229939884	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	229939884	229939884	C	T	SNP	DNER	NM_139072	human	genbank	54_36p	-1	validated	missense	c.2051	p.R684H	1	NULL	"superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_FOLN"	-	no_errors
TRIP12	9320	broad.mit.edu	36	2	230366008	230366008	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	230366008	230366008	G	C	SNP	TRIP12	NM_004238	human	genbank	54_36p	-1	provisional	missense	c.3841	p.Q1281E	1	NULL	"superfamily_ARM-type_fold,HMMPfam_WWE,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
TRIP12	9320	broad.mit.edu	36	2	230391454	230391454	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	230391454	230391454	A	T	SNP	TRIP12	NM_004238	human	genbank	54_36p	-1	provisional	missense	c.1325	p.L442Q	1	superfamily_ARM-type_fold	"HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WWE,superfamily_ARM-type_fold"	-	no_errors
FBXO36	130888	broad.mit.edu	36	2	230583769	230583769	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	230583769	230583769	C	A	SNP	FBXO36	NM_174899	human	genbank	54_36p	1	validated	silent	c.492	p.T164	1	superfamily_F-box domain	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256"	-	no_errors
SLC16A14	151473	broad.mit.edu	36	2	230618979	230618979	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	230618979	230618979	G	T	SNP	SLC16A14	NM_152527	human	genbank	54_36p	-1	provisional	silent	c.1107	p.I369	0.99	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC16A14	151473	broad.mit.edu	36	2	230632059	230632059	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	230632059	230632059	A	C	SNP	SLC16A14	NM_152527	human	genbank	54_36p	-1	provisional	missense	c.254	p.I85R	1	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SLC16A14	151473	broad.mit.edu	36	2	230632123	230632123	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	230632123	230632123	C	A	SNP	SLC16A14	NM_152527	human	genbank	54_36p	-1	provisional	nonsense	c.190	p.E64*	1	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SP140	11262	broad.mit.edu	36	2	230798842	230798842	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	230798842	230798842	A	G	SNP	SP140	NM_007237	human	genbank	54_36p	1	validated	silent	c.39	p.G13	0	NULL	"HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
SP140	11262	broad.mit.edu	36	2	230818845	230818845	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	230818845	230818845	A	G	SNP	SP140	NM_007237	human	genbank	54_36p	1	validated	missense	c.688	p.I230V	0.01	NULL	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
SP140	11262	broad.mit.edu	36	2	230857369	230857369	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	230857369	230857369	T	C	SNP	SP140	NM_007237	human	genbank	54_36p	1	validated	silent	c.1563	p.N521	0.07	NULL	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
SP140	11262	broad.mit.edu	36	2	230883744	230883744	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	230883744	230883744	G	C	SNP	SP140	NM_007237	human	genbank	54_36p	1	validated	silent	c.2217	p.P739	0	superfamily_FYVE/PHD zinc finger	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
SP100	6672	broad.mit.edu	36	2	231017272	231017272	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	231017272	231017272	G	A	SNP	SP100	NM_001080391	human	genbank	54_36p	1	validated	missense	c.406	p.D136N	0	HMMPfam_Sp100	"HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
SP100	6672	broad.mit.edu	36	2	231040173	231040173	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	231040173	231040173	G	A	SNP	SP100	NM_001080391	human	genbank	54_36p	1	validated	silent	c.1290	p.K430	0	NULL	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
SP100	6672	broad.mit.edu	36	2	231077183	231077183	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	231077183	231077183	C	T	SNP	SP100	NM_001080391	human	genbank	54_36p	1	validated	nonsense	c.1804	p.Q602*	0	"HMMPfam_SAND,superfamily_SAND domain-like"	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
SP100	6672	broad.mit.edu	36	2	231114284	231114284	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	231114284	231114284	G	C	SNP	SP100	NM_001080391	human	genbank	54_36p	1	validated	missense	c.2356	p.V786L	0.11	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain"	"HMMPfam_SAND,HMMSmart_SM00258,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMPfam_Sp100,superfamily_SAND domain-like,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
ITM2C	81618	broad.mit.edu	36	2	231450491	231450491	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	231450491	231450491	C	A	SNP	ITM2C	NM_030926	human	genbank	54_36p	1	validated	missense	c.694	p.R232S	1	NULL	HMMPfam_BRICHOS	-	no_errors
ARMC9	80210	broad.mit.edu	36	2	231918008	231918008	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	231918008	231918008	G	C	SNP	ARMC9	NM_025139	human	genbank	54_36p	1	validated	missense	c.1956	p.R652S	0.93	NULL	"HMMSmart_LisH,superfamily_ARM-type_fold"	-	no_errors
B3GNT7	93010	broad.mit.edu	36	2	231971623	231971624	+	In_Frame_Ins	INS	-	GCG	-	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	231971623	231971624	-	GCG	INS	B3GNT7	NM_145236	human	genbank	54_36p	1	provisional	in_frame_ins	c.949_950	p.318in_frame_insG	0.996:0.992	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
NCL	4691	broad.mit.edu	36	2	232033805	232033805	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	232033805	232033805	A	T	SNP	NCL	NM_005381	human	genbank	54_36p	-1	reviewed	silent	c.630	p.A210	0.99	NULL	"HMMPfam_FYDLN_acid,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
C2orf57	165100	broad.mit.edu	36	2	232166123	232166123	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	232166123	232166123	G	T	SNP	C2orf57	NM_152614	human	genbank	54_36p	1	predicted	missense	c.217	p.V73F	0	NULL	NULL	-	no_errors
PTMA	5757	broad.mit.edu	36	2	232281666	232281666	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	232281666	232281666	A	G	SNP	PTMA	ENST00000409321	human	ensembl	54_36p	1	known	splice_site	c.71-2	e2-2	1	-	-	-	no_errors
ALPP	250	broad.mit.edu	36	2	232953634	232953634	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	232953634	232953634	C	T	SNP	ALPP	NM_001632	human	genbank	54_36p	1	reviewed	missense	c.923	p.P308L	1	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE"	-	no_errors
GIGYF2	26058	broad.mit.edu	36	2	233364332	233364332	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	233364332	233364332	C	T	SNP	GIGYF2	NM_001103147	human	genbank	54_36p	1	validated	missense	c.1277	p.T426M	0.01	NULL	"superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF"	-	no_errors
GIGYF2	26058	broad.mit.edu	36	2	233367824	233367824	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	233367824	233367824	G	T	SNP	GIGYF2	NM_001103147	human	genbank	54_36p	1	validated	missense	c.1468	p.V490F	0.06	NULL	"HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF"	-	no_errors
GIGYF2	26058	broad.mit.edu	36	2	233392788	233392788	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	233392788	233392788	C	T	SNP	GIGYF2	NM_001103147	human	genbank	54_36p	1	validated	missense	c.2441	p.A814V	1	NULL	"HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF"	-	no_errors
GIGYF2	26058	broad.mit.edu	36	2	233420471	233420473	+	In_Frame_Del	DEL	ACA	-	ACA	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	ACA	ACA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	233420471	233420473	ACA	-	DEL	GIGYF2	NM_001103147	human	genbank	54_36p	1	validated	in_frame_del	c.3693_3695	p.Q1235in_frame_del	0.150:0.990:0.985	NULL	"superfamily_GYF,HMMPfam_GYF,HMMSmart_GYF"	"(deletion:cds_exon[233420302,233420525])"	no_errors
NGEF	25791	broad.mit.edu	36	2	233461000	233461000	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	233461000	233461000	T	C	SNP	NGEF	NM_019850	human	genbank	54_36p	-1	validated	missense	c.1334	p.K445R	0.92	"superfamily_DBL homology domain (DH-domain),HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
INPP5D	3635	broad.mit.edu	36	2	233695067	233695067	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	233695067	233695067	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	54_36p	1	known	missense	c.205	p.E69K	1	"HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF55550"	"HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF55550,superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos"	-	no_errors
INPP5D	3635	broad.mit.edu	36	2	233698786	233698786	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	233698786	233698786	C	G	SNP	INPP5D	ENST00000359570	human	ensembl	54_36p	1	known	nonsense	c.437	p.S146*	0	NULL	"HMMSmart_IPPc,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,superfamily_SSF55550"	-	no_errors
INPP5D	3635	broad.mit.edu	36	2	233777662	233777662	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	233777662	233777662	C	A	SNP	INPP5D	ENST00000359570	human	ensembl	54_36p	1	known	missense	c.2995	p.P999T	0.83	NULL	"HMMSmart_IPPc,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,superfamily_SSF55550"	-	no_errors
SAG	6295	broad.mit.edu	36	2	233901966	233901966	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	233901966	233901966	C	A	SNP	SAG	NM_000541	human	genbank	54_36p	1	reviewed	missense	c.616	p.P206T	1	"superfamily_Ig_E-set,HMMPfam_Arrestin_C"	"superfamily_Ig_E-set,HMMPfam_Arrestin_N,PatternScan_ARRESTINS,HMMPfam_Arrestin_C"	-	no_errors
DGKD	8527	broad.mit.edu	36	2	234041851	234041851	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	234041851	234041851	C	A	SNP	DGKD	NM_152879	human	genbank	54_36p	1	reviewed	missense	c.3468	p.H1156Q	0.79	"HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2"	###############################################################################################################################################################################################################################################################	-	no_errors
UGT1A8	54576	broad.mit.edu	36	2	234191325	234191325	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	234191325	234191325	C	G	SNP	UGT1A8	NM_019076	human	genbank	54_36p	1	reviewed	nonsense	c.233	p.S78*	0	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A10	54575	broad.mit.edu	36	2	234210562	234210562	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	234210562	234210562	T	C	SNP	UGT1A10	NM_019075	human	genbank	54_36p	1	reviewed	missense	c.655	p.F219L	0	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A9	54600	broad.mit.edu	36	2	234245714	234245714	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	234245714	234245714	A	T	SNP	UGT1A9	NM_021027	human	genbank	54_36p	1	reviewed	missense	c.395	p.K132I	0	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A7	54577	broad.mit.edu	36	2	234256082	234256082	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	234256082	234256082	C	T	SNP	UGT1A7	NM_019077	human	genbank	54_36p	1	reviewed	nonsense	c.760	p.R254*	0.94	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A5	54579	broad.mit.edu	36	2	234286633	234286633	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	234286633	234286633	A	C	SNP	UGT1A5	NM_019078	human	genbank	54_36p	1	reviewed	missense	c.257	p.Q86P	0	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A4	54657	broad.mit.edu	36	2	234292325	234292325	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	234292325	234292325	C	G	SNP	UGT1A4	NM_007120	human	genbank	54_36p	1	reviewed	silent	c.120	p.P40	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT1A3	54659	broad.mit.edu	36	2	234303353	234303353	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	234303353	234303353	G	C	SNP	UGT1A3	NM_019093	human	genbank	54_36p	1	reviewed	missense	c.842	p.C281S	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
HJURP	55355	broad.mit.edu	36	2	234419109	234419136	+	Splice_Site	DEL	TTACCTCAAAATACTCTGCACCTTGTAG	-	TTACCTCAAAATACTCTGCACCTTGTAG	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	TTACCTCAAAATACTCTGCACCTTGTAG	TTACCTCAAAATACTCTGCACCTTGTAG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	234419109	234419136	TTACCTCAAAATACTCTGCACCTTGTAG	-	DEL	HJURP	NM_018410	human	genbank	54_36p	-1	validated	splice_site_del	c.495+25_495+1	e7-1	0.027:0.051:0.122:0.139:0.136:0.110:0.011:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.001:0.003	-	-	"(deletion:intron[234417669,234419112], cds_exon[234419113,234419205])"	no_errors
ARL4C	10123	broad.mit.edu	36	2	235069407	235069407	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	235069407	235069407	T	G	SNP	ARL4C	NM_005737	human	genbank	54_36p	-1	reviewed	missense	c.563	p.Q188P	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Arf,HMMSmart_SM00177,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,PatternScan_ARF"	-	no_errors
SH3BP4	23677	broad.mit.edu	36	2	235615757	235615757	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	235615757	235615757	G	A	SNP	SH3BP4	NM_014521	human	genbank	54_36p	1	reviewed	silent	c.1605	p.Q535	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
SH3BP4	23677	broad.mit.edu	36	2	235615920	235615920	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	235615920	235615920	C	T	SNP	SH3BP4	NM_014521	human	genbank	54_36p	1	reviewed	missense	c.1768	p.R590W	1	NULL	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2"	-	no_errors
AGAP1	116987	broad.mit.edu	36	2	236372871	236372871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	236372871	236372871	G	A	SNP	AGAP1	NM_001037131	human	genbank	54_36p	1	validated	missense	c.923	p.R308H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ASB18	401036	broad.mit.edu	36	2	236814733	236814733	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	236814733	236814733	T	G	SNP	ASB18	NM_212556	human	genbank	54_36p	-1	provisional	missense	c.257	p.N86T	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_SOCS_box"	-	no_errors
IQCA1	79781	broad.mit.edu	36	2	237060261	237060261	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	237060261	237060261	G	A	SNP	IQCA1	NM_024726	human	genbank	54_36p	-1	provisional	missense	c.670	p.R224C	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA"	-	no_errors
COL6A3	1293	broad.mit.edu	36	2	237914270	237914270	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	237914270	237914270	G	C	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.8028	p.D2676E	0.03	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	-	no_errors
COL6A3	1293	broad.mit.edu	36	2	237940387	237940387	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	237940387	237940387	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.5182	p.V1728L	0	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
COL6A3	1293	broad.mit.edu	36	2	237952151	237952151	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	237952151	237952151	C	A	SNP	COL6A3	NM_004369	human	genbank	54_36p	-1	reviewed	missense	c.2364	p.Q788H	0.99	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
LRRFIP1	9208	broad.mit.edu	36	2	238336867	238336867	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	238336867	238336867	T	C	SNP	LRRFIP1	NM_004735	human	genbank	54_36p	1	validated	missense	c.1700	p.V567A	0	NULL	HMMPfam_DUF2051	-	no_errors
RBM44	375316	broad.mit.edu	36	2	238387025	238387025	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	238387025	238387025	G	C	SNP	RBM44	NM_001080504	human	genbank	54_36p	1	validated	missense	c.34	p.G12R	0.01	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
RBM44	375316	broad.mit.edu	36	2	238397705	238397705	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	238397705	238397705	T	C	SNP	RBM44	NM_001080504	human	genbank	54_36p	1	validated	missense	c.2353	p.W785R	1	NULL	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
RBM44	375316	broad.mit.edu	36	2	238402700	238402700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	238402700	238402700	T	C	SNP	RBM44	NM_001080504	human	genbank	54_36p	1	validated	missense	c.2702	p.V901A	0.76	superfamily_SSF54928	"HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928"	-	no_errors
SCLY	51540	broad.mit.edu	36	2	238667798	238667798	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	238667798	238667798	A	C	SNP	SCLY	NM_016510	human	genbank	54_36p	1	validated	splice_site	c.1006-2	e10-2	0.99	-	-	-	no_errors
TRAF3IP1	26146	broad.mit.edu	36	2	238929448	238929448	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	238929448	238929448	A	T	SNP	TRAF3IP1	NM_015650	human	genbank	54_36p	1	validated	missense	c.1677	p.K559N	0.86	HMMPfam_MIP-T3	HMMPfam_MIP-T3	-	no_errors
TRAF3IP1	26146	broad.mit.edu	36	2	238970910	238970910	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	238970910	238970910	C	T	SNP	TRAF3IP1	NM_015650	human	genbank	54_36p	1	validated	silent	c.1761	p.R587	0	HMMPfam_MIP-T3	HMMPfam_MIP-T3	-	no_errors
HDAC4	9759	broad.mit.edu	36	2	239776646	239776647	+	Missense_Mutation	DNP	CA	CA	AT	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	239776646	239776647	CA	AT	DNP	HDAC4	NM_006037	human	genbank	54_36p	-1	reviewed	missense	c.159_158	p.L53H	1.000:1.000	NULL	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	-	no_errors
PRR21	643905	broad.mit.edu	36	2	240631022	240631022	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	240631022	240631022	G	C	SNP	LOC643905	NM_001080835	human	genbank	54_36p	-1	predicted	silent	c.51	p.G17	0.01	NULL	NULL	-	no_errors
OR6B3	150681	broad.mit.edu	36	2	240633458	240633458	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	240633458	240633458	C	A	SNP	OR6B3	NM_173351	human	genbank	54_36p	-1	provisional	missense	c.705	p.W235C	0.03	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR6B3	150681	broad.mit.edu	36	2	240633892	240633892	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	240633892	240633892	G	A	SNP	OR6B3	NM_173351	human	genbank	54_36p	-1	provisional	missense	c.271	p.R91C	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
ANKMY1	51281	broad.mit.edu	36	2	241141048	241141049	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	241141048	241141049	GG	TT	DNP	ANKMY1	NM_016552	human	genbank	54_36p	-1	validated	missense	c.169_168	p.H56Q	0.036:0.016	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	"HMMSmart_SM00698,HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,PatternScan_WW_DOMAIN_1,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1"	-	no_errors
CAPN10	11132	broad.mit.edu	36	2	241177488	241177488	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	241177488	241177488	A	C	SNP	CAPN10	NM_023083	human	genbank	54_36p	1	reviewed	missense	c.197	p.K66T	1	"HMMSmart_SM00230,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C2"	"HMMSmart_SM00230,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,superfamily_Calpain large subunit middle domain (domain III),HMMPfam_Calpain_III,HMMSmart_SM00720"	-	no_errors
CAPN10	11132	broad.mit.edu	36	2	241183346	241183346	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	241183346	241183346	G	A	SNP	CAPN10	NM_023083	human	genbank	54_36p	1	reviewed	silent	c.1230	p.A410	0	"HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)"	"PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_SM00230,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_Cysteine proteinases"	-	no_errors
GPR35	2859	broad.mit.edu	36	2	241218213	241218213	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	241218213	241218213	C	G	SNP	GPR35	NM_005301	human	genbank	54_36p	1	provisional	missense	c.171	p.I57M	0.98	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
AQP12B	653437	broad.mit.edu	36	2	241270473	241270473	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	2	241270473	241270473	C	-	DEL	AQP12B	NM_001102467	human	genbank	54_36p	-1	validated	frame_shift_del	c.455	p.S152fs	1	superfamily_MIP	superfamily_MIP	"(deletion:cds_exon[241270321,241270927])"	no_errors
KIF1A	547	broad.mit.edu	36	2	241333910	241333910	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	241333910	241333910	C	A	SNP	KIF1A	NM_004321	human	genbank	54_36p	-1	reviewed	missense	c.2989	p.G997C	1	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
AGXT	189	broad.mit.edu	36	2	241466192	241466192	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	241466192	241466192	C	A	SNP	AGXT	NM_000030	human	genbank	54_36p	1	reviewed	missense	c.1023	p.D341E	0.76	"HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases"	"HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases,PatternScan_AA_TRANSFER_CLASS_5"	-	no_errors
SNED1	25992	broad.mit.edu	36	2	241637192	241637192	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	241637192	241637192	T	C	SNP	SNED1	NM_001080437	human	genbank	54_36p	1	provisional	missense	c.1585	p.C529R	0.99	superfamily_EGF/Laminin	###############################################################################################################################################################################################################################################################	-	no_errors
SNED1	25992	broad.mit.edu	36	2	241670404	241670404	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	241670404	241670404	C	T	SNP	SNED1	NM_001080437	human	genbank	54_36p	1	provisional	missense	c.4073	p.S1358F	0.99	superfamily_EGF/Laminin	###############################################################################################################################################################################################################################################################	-	no_errors
MTERFD2	130916	broad.mit.edu	36	2	241684145	241684145	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	241684145	241684145	C	G	SNP	MTERFD2	NM_182501	human	genbank	54_36p	-1	provisional	missense	c.1087	p.E363Q	0.03	NULL	"HMMPfam_mTERF,HMMSmart_SM00733"	-	no_errors
PASK	23178	broad.mit.edu	36	2	241700379	241700379	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	241700379	241700379	G	T	SNP	PASK	NM_015148	human	genbank	54_36p	-1	validated	missense	c.3482	p.T1161N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PASK	23178	broad.mit.edu	36	2	241726813	241726813	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	241726813	241726813	G	A	SNP	PASK	NM_015148	human	genbank	54_36p	-1	validated	missense	c.670	p.R224C	0	"HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)"	"HMMSmart_SM00091,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_PAS,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
PPP1R7	5510	broad.mit.edu	36	2	241748516	241748516	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	241748516	241748516	T	C	SNP	PPP1R7	NM_002712	human	genbank	54_36p	1	provisional	silent	c.531	p.S177	0.87	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1"	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00446"	-	no_errors
PPP1R7	5510	broad.mit.edu	36	2	241754482	241754482	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	241754482	241754482	T	C	SNP	PPP1R7	NM_002712	human	genbank	54_36p	1	provisional	missense	c.772	p.Y258H	1	"HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like"	"HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00446,HMMSmart_SM00365,superfamily_L domain-like"	-	no_errors
FARP2	9855	broad.mit.edu	36	2	242044963	242044964	+	Silent	DNP	AG	AG	TC	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	242044963	242044964	AG	TC	DNP	FARP2	NM_014808	human	genbank	54_36p	1	provisional	silent	c.1540_1541	p.LSD513	0.997:0.996	superfamily_DBL homology domain (DH-domain)	###############################################################################################################################################################################################################################################################	-	no_errors
FARP2	9855	broad.mit.edu	36	2	242051477	242051477	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	242051477	242051477	C	T	SNP	FARP2	NM_014808	human	genbank	54_36p	1	provisional	silent	c.1732	p.L578	1	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)"	###############################################################################################################################################################################################################################################################	-	no_errors
BOK	666	broad.mit.edu	36	2	242150490	242150490	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	242150490	242150490	T	C	SNP	BOK	NM_032515	human	genbank	54_36p	1	reviewed	missense	c.275	p.L92P	1	"superfamily_SSF56854,HMMPfam_Bcl-2,HMMSmart_BCL"	"PatternScan_BH1,PatternScan_BH2,PatternScan_BH3,PatternScan_BH4_1,superfamily_SSF56854,HMMPfam_Bcl-2,HMMSmart_BCL"	-	no_errors
PDCD1	5133	broad.mit.edu	36	2	242443625	242443625	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	242443625	242443625	C	G	SNP	PDCD1	NM_005018	human	genbank	54_36p	-1	reviewed	missense	c.257	p.R86P	0	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406"	-	no_errors
IL5RA	3568	broad.mit.edu	36	3	3112080	3112080	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	3112080	3112080	C	T	SNP	IL5RA	NM_000564	human	genbank	54_36p	-1	reviewed	missense	c.758	p.R253H	0.02	superfamily_Fibronectin type III	"superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2"	-	no_errors
SETMAR	6419	broad.mit.edu	36	3	4329990	4329990	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	4329990	4329990	G	A	SNP	SETMAR	NM_006515	human	genbank	54_36p	1	validated	missense	c.526	p.D176N	0.05	"superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	"HMMSmart_SM00468,HMMPfam_Pre-SET,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Transposase_1"	-	no_errors
ITPR1	3708	broad.mit.edu	36	3	4678822	4678822	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	4678822	4678822	T	A	SNP	ITPR1	NM_001099952	human	genbank	54_36p	1	validated	silent	c.1308	p.S436	1	superfamily_IP3 receptor type 1 binding core domain 2	"HMMPfam_Ins145_P3_rec,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR,superfamily_IP3 receptor type 1 binding core domain 2,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans"	-	no_errors
EDEM1	9695	broad.mit.edu	36	3	5224779	5224779	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	5224779	5224779	T	G	SNP	EDEM1	NM_014674	human	genbank	54_36p	1	validated	missense	c.1340	p.V447G	1	"superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47"	"superfamily_Seven-hairpin glycosidases,HMMPfam_Glyco_hydro_47"	-	no_errors
GRM7	2917	broad.mit.edu	36	3	7431806	7431806	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	7431806	7431806	C	T	SNP	GRM7	NM_181874	human	genbank	54_36p	1	reviewed	missense	c.1130	p.T377M	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GRM7	2917	broad.mit.edu	36	3	7595140	7595140	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	7595140	7595140	G	A	SNP	GRM7	NM_181874	human	genbank	54_36p	1	reviewed	missense	c.1547	p.R516Q	0.99	superfamily_SSF53822	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822"	-	no_errors
C3orf32	51066	broad.mit.edu	36	3	8650578	8650578	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	8650578	8650578	G	C	SNP	C3orf32	NM_015931	human	genbank	54_36p	-1	predicted	missense	c.47	p.P16R	0.06	NULL	NULL	-	no_errors
RAD18	56852	broad.mit.edu	36	3	8980025	8980025	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	8980025	8980025	G	A	SNP	RAD18	NM_020165	human	genbank	54_36p	-1	reviewed	silent	c.45	p.V15	0.84	superfamily_RING/U-box	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00734,HMMPfam_SAP,HMMSmart_SM00513"	-	no_errors
SETD5	55209	broad.mit.edu	36	3	9445678	9445678	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	9445678	9445678	T	C	SNP	SETD5	NM_001080517	human	genbank	54_36p	1	provisional	missense	c.56	p.M19T	1	NULL	"superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
SETD5	55209	broad.mit.edu	36	3	9487490	9487490	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	9487490	9487490	A	G	SNP	SETD5	NM_001080517	human	genbank	54_36p	1	provisional	silent	c.3072	p.G1024	0.86	NULL	"HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	-	no_errors
SETD5	55209	broad.mit.edu	36	3	9492427	9492427	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	9492427	9492427	T	C	SNP	SETD5	NM_001080517	human	genbank	54_36p	1	provisional	silent	c.3981	p.S1327	1	NULL	"HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	-	no_errors
LHFPL4	375323	broad.mit.edu	36	3	9522805	9522805	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	9522805	9522805	C	T	SNP	LHFPL4	NM_198560	human	genbank	54_36p	-1	reviewed	silent	c.489	p.T163	0.5	HMMPfam_L_HGMIC_fpl	HMMPfam_L_HGMIC_fpl	-	no_errors
CPNE9	151835	broad.mit.edu	36	3	9735228	9735228	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	9735228	9735228	C	T	SNP	CPNE9	NM_153635	human	genbank	54_36p	1	validated	missense	c.1183	p.R395C	1	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	-	no_errors
BRPF1	7862	broad.mit.edu	36	3	9757526	9757526	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	9757526	9757526	C	G	SNP	BRPF1	NM_001003694	human	genbank	54_36p	1	reviewed	missense	c.1623	p.H541Q	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP"	-	no_errors
OGG1	4968	broad.mit.edu	36	3	9782658	9782658	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	9782658	9782658	G	C	SNP	OGG1	NM_016821	human	genbank	54_36p	1	reviewed	missense	c.1114	p.D372H	0	NULL	"superfamily_TFIID_C/glycos_N,HMMPfam_OGG_N,superfamily_DNA_glycsylse,HMMPfam_HhH-GPD,HMMSmart_ENDO3c"	-	no_errors
IL17RC	84818	broad.mit.edu	36	3	9934070	9934070	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	9934070	9934070	T	G	SNP	IL17RC	NM_153461	human	genbank	54_36p	1	reviewed	missense	c.71	p.L24R	0.39	NULL	HMMPfam_SEFIR	-	no_errors
SEC13	6396	broad.mit.edu	36	3	10332041	10332041	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	10332041	10332041	C	T	SNP	SEC13	NM_183352	human	genbank	54_36p	-1	reviewed	missense	c.128	p.R43H	1	superfamily_WD40_like	"PatternScan_WD_REPEATS_1,HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like"	-	no_errors
ATP2B2	491	broad.mit.edu	36	3	10392222	10392222	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	10392222	10392222	G	A	SNP	ATP2B2	NM_001001331	human	genbank	54_36p	-1	reviewed	silent	c.1308	p.Y436	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP2B2	491	broad.mit.edu	36	3	10466053	10466053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	10466053	10466053	G	A	SNP	ATP2B2	NM_001001331	human	genbank	54_36p	-1	reviewed	missense	c.175	p.R59C	1	"HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP2B2	491	broad.mit.edu	36	3	10466191	10466191	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	10466191	10466191	T	C	SNP	ATP2B2	NM_001001331	human	genbank	54_36p	-1	reviewed	missense	c.37	p.N13D	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SLC6A1	6529	broad.mit.edu	36	3	11034656	11034656	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	11034656	11034656	C	T	SNP	SLC6A1	NM_003042	human	genbank	54_36p	1	validated	silent	c.366	p.F122	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
VGLL4	9686	broad.mit.edu	36	3	11618368	11618368	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	11618368	11618368	C	A	SNP	VGLL4	NM_014667	human	genbank	54_36p	-1	validated	nonsense	c.193	p.E65*	0.99	NULL	HMMSmart_SM00711	-	no_errors
C3orf31	132001	broad.mit.edu	36	3	11826157	11826157	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	11826157	11826157	C	G	SNP	C3orf31	NM_138807	human	genbank	54_36p	-1	provisional	splice_site	c.709-1	e6-1	1	-	-	-	no_errors
IQSEC1	9922	broad.mit.edu	36	3	12932152	12932152	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	12932152	12932152	T	C	SNP	IQSEC1	NM_014869	human	genbank	54_36p	-1	validated	missense	c.2144	p.N715S	1	superfamily_Sec7 domain	"superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
IQSEC1	9922	broad.mit.edu	36	3	12938738	12938738	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	12938738	12938738	C	T	SNP	IQSEC1	NM_014869	human	genbank	54_36p	-1	validated	missense	c.1777	p.V593I	1	"HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain"	"HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
NUP210	23225	broad.mit.edu	36	3	13335796	13335796	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	13335796	13335796	C	A	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	missense	c.5413	p.D1805Y	1	NULL	"superfamily_Invasin/intimin cell-adhesion fragments,HMMPfam_Big_2,HMMSmart_SM00635"	-	no_errors
NUP210	23225	broad.mit.edu	36	3	13338792	13338792	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	13338792	13338792	C	G	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	missense	c.4816	p.E1606Q	0.2	NULL	"HMMPfam_Big_2,HMMSmart_SM00635,superfamily_Invasin/intimin cell-adhesion fragments"	-	no_errors
NUP210	23225	broad.mit.edu	36	3	13353308	13353308	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	13353308	13353308	G	A	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	silent	c.3663	p.D1221	0.99	NULL	"HMMPfam_Big_2,HMMSmart_SM00635,superfamily_Invasin/intimin cell-adhesion fragments"	-	no_errors
NUP210	23225	broad.mit.edu	36	3	13392904	13392904	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	13392904	13392904	C	A	SNP	NUP210	NM_024923	human	genbank	54_36p	-1	reviewed	missense	c.1180	p.A394S	0.02	NULL	"HMMPfam_Big_2,HMMSmart_SM00635,superfamily_Invasin/intimin cell-adhesion fragments"	-	no_errors
HDAC11	79885	broad.mit.edu	36	3	13513271	13513271	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	13513271	13513271	C	T	SNP	HDAC11	NM_024827	human	genbank	54_36p	1	provisional	silent	c.288	p.P96	1	"superfamily_SSF52768,HMMPfam_Hist_deacetyl"	"superfamily_SSF52768,HMMPfam_Hist_deacetyl"	-	no_errors
HDAC11	79885	broad.mit.edu	36	3	13517290	13517290	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	13517290	13517290	G	C	SNP	HDAC11	NM_024827	human	genbank	54_36p	1	provisional	splice_site	c.489+1	e6+1	1	-	-	-	no_errors
FBLN2	2199	broad.mit.edu	36	3	13588029	13588029	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	13588029	13588029	A	G	SNP	FBLN2	NM_001004019	human	genbank	54_36p	1	reviewed	missense	c.1174	p.I392V	0	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FBLN2	2199	broad.mit.edu	36	3	13636311	13636311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	13636311	13636311	G	A	SNP	FBLN2	ENST00000295761	human	ensembl	54_36p	1	known	missense	c.2131	p.A711T	1	"HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin"	"HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
FBLN2	2199	broad.mit.edu	36	3	13653070	13653070	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	13653070	13653070	G	A	SNP	FBLN2	ENST00000295761	human	ensembl	54_36p	1	known	splice_site	c.3335+1	e17+1	1	-	-	-	no_errors
WNT7A	7476	broad.mit.edu	36	3	13835897	13835897	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	13835897	13835897	C	G	SNP	WNT7A	NM_004625	human	genbank	54_36p	-1	reviewed	missense	c.595	p.E199Q	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
WNT7A	7476	broad.mit.edu	36	3	13871087	13871087	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	13871087	13871087	C	A	SNP	WNT7A	NM_004625	human	genbank	54_36p	-1	reviewed	missense	c.513	p.E171D	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
WNT7A	7476	broad.mit.edu	36	3	13871219	13871219	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	13871219	13871219	G	A	SNP	WNT7A	NM_004625	human	genbank	54_36p	-1	reviewed	silent	c.381	p.N127	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
XPC	7508	broad.mit.edu	36	3	14165214	14165214	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	14165214	14165214	C	G	SNP	XPC	ENST00000285021	human	ensembl	54_36p	-1	known	missense	c.2260	p.G754R	1	HMMPfam_BHD_3	"HMMPfam_Rad4,HMMPfam_BHD_1,HMMPfam_BHD_2,HMMPfam_BHD_3"	-	no_errors
GRIP2	80852	broad.mit.edu	36	3	14511477	14511477	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	14511477	14511477	G	A	SNP	GRIP2	NM_001080423	human	genbank	54_36p	-1	provisional	missense	c.3142	p.R1048W	0.02	"superfamily_PDZ domain-like,HMMPfam_PDZ"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
C3orf20	84077	broad.mit.edu	36	3	14699308	14699308	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	14699308	14699308	C	A	SNP	C3orf20	NM_032137	human	genbank	54_36p	1	predicted	silent	c.84	p.L28	0.63	NULL	NULL	-	no_errors
C3orf20	84077	broad.mit.edu	36	3	14773895	14773895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	14773895	14773895	G	A	SNP	C3orf20	NM_032137	human	genbank	54_36p	1	predicted	missense	c.1954	p.E652K	0.01	NULL	NULL	-	no_errors
C3orf20	84077	broad.mit.edu	36	3	14778011	14778011	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	14778011	14778011	G	T	SNP	C3orf20	NM_032137	human	genbank	54_36p	1	predicted	missense	c.2380	p.G794W	1	NULL	NULL	-	no_errors
FGD5	152273	broad.mit.edu	36	3	14837164	14837164	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	14837164	14837164	G	C	SNP	FGD5	NM_152536	human	genbank	54_36p	1	validated	missense	c.859	p.G287R	1	NULL	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
CAPN7	23473	broad.mit.edu	36	3	15257122	15257122	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	15257122	15257122	G	C	SNP	CAPN7	NM_014296	human	genbank	54_36p	1	reviewed	missense	c.1546	p.D516H	1	"superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2"	"PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMSmart_MIT,HMMPfam_MIT,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,superfamily_Peptidase_C2,HMMPfam_Calpain_III,HMMSmart_calpain_III"	-	no_errors
SH3BP5	9467	broad.mit.edu	36	3	15273559	15273559	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	15273559	15273559	G	A	SNP	SH3BP5	NM_004844	human	genbank	54_36p	-1	validated	nonsense	c.955	p.Q319*	1	NULL	HMMPfam_SH3BP5	-	no_errors
ANKRD28	23243	broad.mit.edu	36	3	15724566	15724566	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	15724566	15724566	C	T	SNP	ANKRD28	NM_015199	human	genbank	54_36p	-1	provisional	silent	c.1326	p.L442	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank"	-	no_errors
RFTN1	23180	broad.mit.edu	36	3	16333370	16333373	+	Frame_Shift_Del	DEL	ACTT	-	-	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	ACTT	ACTT	-	-	ACTT	ACTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	16333370	16333373	ACTT	-	DEL	RFTN1	NM_015150	human	genbank	54_36p	-1	validated	frame_shift_del	c.1706_1703	p.E568fs	0.000:0.000:0.000:0.000	NULL	NULL	"(deletion:cds_exon[16333339,16333743])"	no_errors
RFTN1	23180	broad.mit.edu	36	3	16333610	16333610	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	16333610	16333610	C	A	SNP	RFTN1	NM_015150	human	genbank	54_36p	-1	validated	missense	c.1466	p.G489V	0	NULL	NULL	-	no_errors
RFTN1	23180	broad.mit.edu	36	3	16333734	16333734	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	16333734	16333734	G	A	SNP	RFTN1	NM_015150	human	genbank	54_36p	-1	validated	nonsense	c.1342	p.R448*	1	NULL	NULL	-	no_errors
PLCL2	23228	broad.mit.edu	36	3	17026287	17026287	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	17026287	17026287	C	A	SNP	PLCL2	NM_015184	human	genbank	54_36p	1	validated	missense	c.67	p.L23I	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
TBC1D5	9779	broad.mit.edu	36	3	17177465	17177465	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	17177465	17177465	G	T	SNP	TBC1D5	NM_014744	human	genbank	54_36p	-1	validated	missense	c.2382	p.D794E	1	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC"	-	no_errors
KCNH8	131096	broad.mit.edu	36	3	19359136	19359136	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	19359136	19359136	C	G	SNP	KCNH8	NM_144633	human	genbank	54_36p	1	reviewed	missense	c.496	p.R166G	1	NULL	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_SSF55785,HMMPfam_PAS,HMMSmart_PAC,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding"	-	no_errors
EFHB	151651	broad.mit.edu	36	3	19896296	19896296	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	19896296	19896296	G	A	SNP	EFHB	NM_144715	human	genbank	54_36p	-1	validated	missense	c.2333	p.A778V	1	superfamily_EF-hand	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
ZNF385D	79750	broad.mit.edu	36	3	21437843	21437843	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	21437843	21437843	C	A	SNP	ZNF385D	NM_024697	human	genbank	54_36p	-1	provisional	missense	c.1055	p.S352I	0.99	NULL	"HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2"	-	no_errors
NKIRAS1	28512	broad.mit.edu	36	3	23909739	23909739	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	23909739	23909739	C	T	SNP	NKIRAS1	NM_020345	human	genbank	54_36p	-1	validated	missense	c.430	p.V144I	1	"superfamily_SSF52540,HMMPfam_Ras"	"superfamily_SSF52540,HMMPfam_Ras"	-	no_errors
NR1D2	9975	broad.mit.edu	36	3	23993837	23993837	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	23993837	23993837	C	A	SNP	NR1D2	NM_005126	human	genbank	54_36p	1	reviewed	missense	c.1663	p.L555I	1	"superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
TOP2B	7155	broad.mit.edu	36	3	25640152	25640152	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	25640152	25640152	T	C	SNP	TOP2B	NM_001068	human	genbank	54_36p	-1	reviewed	missense	c.2570	p.Y857C	1	"superfamily_Topo_IIA_cen,HMMSmart_TOP4c,HMMPfam_DNA_topoisoIV"	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMSmart_TOP2c,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_gyraseB,superfamily_Topo_IIA_cen,PatternScan_TOPOISOMERASE_II,HMMSmart_TOP4c,HMMPfam_DNA_topoisoIV,HMMPfam_DTHCT"	-	no_errors
LRRC3B	116135	broad.mit.edu	36	3	26726762	26726762	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	26726762	26726762	A	G	SNP	LRRC3B	NM_052953	human	genbank	54_36p	1	provisional	missense	c.595	p.K199E	1	NULL	"HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
NEK10	152110	broad.mit.edu	36	3	27362694	27362694	+	Missense_Mutation	SNP	G	G	C	rs56125830	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	27362694	27362694	G	C	SNP	NEK10	ENST00000341435	human	ensembl	54_36p	-1	known	missense	c.150	p.F50L	1	NULL	"superfamily_ARM repeat,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
SLC4A7	9497	broad.mit.edu	36	3	27414817	27414817	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	27414817	27414817	C	G	SNP	SLC4A7	NM_003615	human	genbank	54_36p	-1	validated	missense	c.2432	p.G811A	1	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC4A7	9497	broad.mit.edu	36	3	27447846	27447846	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	27447846	27447846	G	T	SNP	SLC4A7	NM_003615	human	genbank	54_36p	-1	validated	missense	c.1070	p.A357E	0.72	HMMPfam_Band_3_cyto	"HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein"	-	no_errors
EOMES	8320	broad.mit.edu	36	3	27733589	27733589	+	Nonsense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	27733589	27733589	A	C	SNP	EOMES	NM_005442	human	genbank	54_36p	-1	reviewed	nonsense	c.2037	p.Y679*	1	NULL	"HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
AZI2	64343	broad.mit.edu	36	3	28355078	28355078	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	28355078	28355078	G	A	SNP	AZI2	NM_022461	human	genbank	54_36p	-1	validated	silent	c.249	p.S83	1	NULL	NULL	-	no_errors
ZCWPW2	152098	broad.mit.edu	36	3	28429700	28429700	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	28429700	28429700	G	T	SNP	ZCWPW2	NM_001040432	human	genbank	54_36p	1	provisional	missense	c.137	p.S46I	1	HMMPfam_zf-CW	"HMMPfam_zf-CW,superfamily_SSF63748,HMMPfam_PWWP"	-	no_errors
ZCWPW2	152098	broad.mit.edu	36	3	28429761	28429761	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	28429761	28429761	A	G	SNP	ZCWPW2	NM_001040432	human	genbank	54_36p	1	provisional	silent	c.198	p.S66	0.02	HMMPfam_zf-CW	"HMMPfam_PWWP,HMMPfam_zf-CW,superfamily_SSF63748"	-	no_errors
TGFBR2	7048	broad.mit.edu	36	3	30704919	30704919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	30704919	30704919	G	A	SNP	TGFBR2	NM_001024847	human	genbank	54_36p	1	reviewed	missense	c.1511	p.R504Q	1	"HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	"HMMPfam_ecTbetaR2,superfamily_Snake toxin-like,HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TRIM71	131405	broad.mit.edu	36	3	32907212	32907212	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	32907212	32907212	C	A	SNP	TRIM71	NM_001039111	human	genbank	54_36p	1	provisional	silent	c.1512	p.S504	0.96	"HMMPfam_Filamin,HMMSmart_IG_FLMN,superfamily_Ig_E-set"	"HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_Filamin,HMMSmart_IG_FLMN,superfamily_Ig_E-set,superfamily_SSF101898,HMMPfam_NHL"	-	no_errors
SUSD5	26032	broad.mit.edu	36	3	33230456	33230456	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	33230456	33230456	G	A	SNP	SUSD5	NM_015551	human	genbank	54_36p	-1	validated	silent	c.258	p.C86	0.96	"HMMPfam_Xlink,HMMSmart_LINK,superfamily_C-type_lectin_fold"	"HMMSmart_CCP,HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,superfamily_Complement_control_module,superfamily_C-type_lectin_fold"	-	no_errors
UBP1	7342	broad.mit.edu	36	3	33456238	33456238	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	33456238	33456238	C	A	SNP	UBP1	NM_014517	human	genbank	54_36p	-1	validated	missense	c.107	p.S36I	1	HMMPfam_CP2	"HMMPfam_CP2,superfamily_SAM/Pointed domain"	-	no_errors
ARPP21	10777	broad.mit.edu	36	3	35753797	35753797	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	35753797	35753797	C	T	SNP	ARPP-21	NM_016300	human	genbank	54_36p	1	validated	missense	c.1583	p.P528L	0.29	NULL	"HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H"	-	no_errors
STAC	6769	broad.mit.edu	36	3	36509724	36509724	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	36509724	36509724	C	T	SNP	STAC	NM_003149	human	genbank	54_36p	1	provisional	silent	c.765	p.S255	1	NULL	"HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Cysteine-rich domain,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
EPM2AIP1	9852	broad.mit.edu	36	3	37008083	37008084	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	37008083	37008084	-	C	INS	EPM2AIP1	NM_014805	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1490_1489	p.E497fs	0.935:0.684	NULL	NULL	-	no_errors
EPM2AIP1	9852	broad.mit.edu	36	3	37009561	37009561	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	37009561	37009561	C	G	SNP	EPM2AIP1	NM_014805	human	genbank	54_36p	-1	reviewed	silent	c.12	p.T4	0.99	NULL	NULL	-	no_errors
MLH1	4292	broad.mit.edu	36	3	37017540	37017540	+	Nonsense_Mutation	SNP	C	C	T	rs63751221	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	37017540	37017540	C	T	SNP	MLH1	NM_000249	human	genbank	54_36p	1	reviewed	nonsense	c.298	p.R100*	1	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1"	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_DNA_mis_repair"	-	no_errors
GOLGA4	2803	broad.mit.edu	36	3	37340324	37340324	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	37340324	37340324	A	C	SNP	GOLGA4	NM_002078	human	genbank	54_36p	1	reviewed	missense	c.1943	p.K648T	0.71	NULL	"superfamily_Prefoldin,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_GRIP,HMMSmart_SM00755,superfamily_GRIP domain"	-	no_errors
C3orf35	339883	broad.mit.edu	36	3	37451453	37451453	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	37451453	37451453	G	T	SNP	C3orf35	NM_178339	human	genbank	54_36p	1	validated	missense	c.341	p.G114V	0	NULL	NULL	-	no_errors
DLEC1	9940	broad.mit.edu	36	3	38114099	38114099	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	38114099	38114099	G	A	SNP	DLEC1	NM_007337	human	genbank	54_36p	1	reviewed	silent	c.2532	p.S844	0	NULL	NULL	-	no_errors
ACVR2B	93	broad.mit.edu	36	3	38493821	38493821	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	38493821	38493821	A	T	SNP	ACVR2B	NM_001106	human	genbank	54_36p	1	reviewed	missense	c.92	p.Y31F	1	"superfamily_Snake toxin-like,HMMPfam_Activin_recp"	"superfamily_Snake toxin-like,HMMPfam_Activin_recp,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SCN5A	6331	broad.mit.edu	36	3	38567056	38567056	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	38567056	38567056	G	A	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	silent	c.5811	p.S1937	0.4	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ"	-	no_errors
SCN5A	6331	broad.mit.edu	36	3	38621301	38621301	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	38621301	38621301	G	A	SNP	SCN5A	NM_001099404	human	genbank	54_36p	-1	reviewed	missense	c.1441	p.R481W	0.4	NULL	"HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN10A	6336	broad.mit.edu	36	3	38745228	38745228	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	38745228	38745228	G	A	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	nonsense	c.2449	p.R817*	0	"superfamily_SSF81324,HMMPfam_Ion_trans"	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc"	-	no_errors
SCN10A	6336	broad.mit.edu	36	3	38777222	38777222	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	38777222	38777222	G	A	SNP	SCN10A	NM_006514	human	genbank	54_36p	-1	validated	nonsense	c.904	p.R302*	0.01	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_SSF81324"	-	no_errors
SCN11A	11280	broad.mit.edu	36	3	38916410	38916411	+	Missense_Mutation	DNP	TG	TG	AT	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	38916410	38916411	TG	AT	DNP	SCN11A	NM_014139	human	genbank	54_36p	-1	validated	missense	c.2001_2000	p.P667H	0.000:0.000	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc"	-	no_errors
TTC21A	199223	broad.mit.edu	36	3	39145335	39145335	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	39145335	39145335	G	A	SNP	TTC21A	NM_001105513	human	genbank	54_36p	1	validated	missense	c.1828	p.G610S	0.16	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	-	no_errors
CSRNP1	64651	broad.mit.edu	36	3	39160039	39160039	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	39160039	39160039	G	A	SNP	AXUD1	NM_033027	human	genbank	54_36p	-1	reviewed	silent	c.1281	p.D427	0.98	NULL	NULL	-	no_errors
CSRNP1	64651	broad.mit.edu	36	3	39160375	39160375	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	39160375	39160375	A	T	SNP	AXUD1	NM_033027	human	genbank	54_36p	-1	reviewed	silent	c.945	p.P315	0	NULL	NULL	-	no_errors
CSRNP1	64651	broad.mit.edu	36	3	39163086	39163086	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	39163086	39163086	C	G	SNP	AXUD1	NM_033027	human	genbank	54_36p	-1	reviewed	missense	c.92	p.R31P	0	NULL	NULL	-	no_errors
XIRP1	165904	broad.mit.edu	36	3	39204122	39204122	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	39204122	39204122	C	T	SNP	XIRP1	NM_194293	human	genbank	54_36p	-1	provisional	missense	c.1819	p.A607T	0.02	NULL	HMMPfam_Xin	-	no_errors
MOBP	4336	broad.mit.edu	36	3	39518705	39518705	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	39518705	39518705	T	G	SNP	MOBP	NM_182935	human	genbank	54_36p	1	validated	missense	c.141	p.C47W	1	HMMPfam_MOBP	HMMPfam_MOBP	-	no_errors
MYRIP	25924	broad.mit.edu	36	3	40060605	40060605	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	40060605	40060605	G	T	SNP	MYRIP	NM_015460	human	genbank	54_36p	1	validated	missense	c.171	p.Q57H	1	"superfamily_FYVE_PHD_ZnF,HMMPfam_MOBP"	"superfamily_FYVE_PHD_ZnF,HMMPfam_MOBP"	-	no_errors
MYRIP	25924	broad.mit.edu	36	3	40261045	40261045	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	40261045	40261045	G	A	SNP	MYRIP	NM_015460	human	genbank	54_36p	1	validated	silent	c.2205	p.A735	0.95	NULL	"HMMPfam_MOBP,superfamily_FYVE_PHD_ZnF"	-	no_errors
ENTPD3	956	broad.mit.edu	36	3	40432431	40432431	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	40432431	40432431	G	T	SNP	ENTPD3	NM_001248	human	genbank	54_36p	1	validated	nonsense	c.694	p.G232*	0.25	HMMPfam_GDA1_CD39	"HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE"	-	no_errors
ZNF620	253639	broad.mit.edu	36	3	40528908	40528908	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	40528908	40528908	A	T	SNP	ZNF620	NM_175888	human	genbank	54_36p	1	validated	missense	c.163	p.T55S	0.02	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF621	285268	broad.mit.edu	36	3	40548885	40548885	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	40548885	40548885	A	G	SNP	ZNF621	NM_001098414	human	genbank	54_36p	1	validated	missense	c.620	p.Y207C	0.8	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CTNNB1	1499	broad.mit.edu	36	3	41253081	41253081	+	Splice_Site	SNP	A	A	G	rs71811389	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	41253081	41253081	A	G	SNP	CTNNB1	NM_001098209	human	genbank	54_36p	1	validated	splice_site	c.1955-2	e12-2	1	-	-	-	no_errors
ULK4	54986	broad.mit.edu	36	3	41721792	41721792	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	41721792	41721792	T	A	SNP	ULK4	NM_017886	human	genbank	54_36p	-1	validated	nonsense	c.2644	p.K882*	0.64	NULL	"PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,superfamily_ARM-type_fold"	-	no_errors
NKTR	4820	broad.mit.edu	36	3	42662461	42662462	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	42662461	42662462	GA	TC	DNP	NKTR	NM_005385	human	genbank	54_36p	1	reviewed	missense	c.4379_4380	p.R1460I	1.000:1.000	NULL	"superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
ZBTB47	92999	broad.mit.edu	36	3	42680326	42680326	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	42680326	42680326	C	G	SNP	ZBTB47	NM_145166	human	genbank	54_36p	1	validated	missense	c.643	p.L215V	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
KBTBD5	131377	broad.mit.edu	36	3	42702426	42702426	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	42702426	42702426	G	T	SNP	KBTBD5	NM_152393	human	genbank	54_36p	1	validated	missense	c.312	p.L104F	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
HHATL	57467	broad.mit.edu	36	3	42713345	42713345	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	42713345	42713345	G	T	SNP	HHATL	NM_020707	human	genbank	54_36p	-1	provisional	missense	c.1039	p.L347I	1	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
HHATL	57467	broad.mit.edu	36	3	42714831	42714831	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	42714831	42714831	C	T	SNP	HHATL	NM_020707	human	genbank	54_36p	-1	provisional	missense	c.500	p.G167D	1	NULL	HMMPfam_MBOAT	-	no_errors
CCDC13	152206	broad.mit.edu	36	3	42774686	42774686	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	42774686	42774686	C	A	SNP	CCDC13	NM_144719	human	genbank	54_36p	-1	validated	missense	c.156	p.E52D	0	NULL	NULL	-	no_errors
CYP8B1	1582	broad.mit.edu	36	3	42892237	42892237	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	42892237	42892237	G	A	SNP	CYP8B1	NM_004391	human	genbank	54_36p	-1	reviewed	nonsense	c.76	p.R26*	0.32	NULL	"superfamily_Cytochrome P450,HMMPfam_p450"	-	no_errors
C3orf39	84892	broad.mit.edu	36	3	43096740	43096740	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	43096740	43096740	C	T	SNP	C3orf39	NM_032806	human	genbank	54_36p	-1	provisional	missense	c.1188	p.M396I	0.08	NULL	superfamily_Fibronectin type III	-	no_errors
SNRK	54861	broad.mit.edu	36	3	43363914	43363914	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	3	43363914	43363914	G	T	SNP	SNRK	NM_001100594	human	genbank	54_36p	1	validated	missense	c.1159	p.V387F	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SNRK	54861	broad.mit.edu	36	3	43364243	43364243	+	Silent	SNP	C	C	T	rs2036617	"by-cluster,by-frequency,by-2hit-2allele,by-hapmap"	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	43364243	43364243	C	T	SNP	SNRK	NM_001100594	human	genbank	54_36p	1	validated	silent	c.1488	p.D496	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
SNRK	54861	broad.mit.edu	36	3	43364896	43364899	+	Frame_Shift_Del	DEL	CCAC	-	CCAC	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	CCAC	CCAC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	43364896	43364899	CCAC	-	DEL	SNRK	NM_001100594	human	genbank	54_36p	1	validated	frame_shift_del	c.2141_2144	p.T715fs	0.034:0.018:0.005:0.001	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	"(deletion:cds_exon[43363835,43365053])"	no_errors
ANO10	55129	broad.mit.edu	36	3	43593194	43593194	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	43593194	43593194	A	C	SNP	ANO10	NM_018075	human	genbank	54_36p	-1	validated	missense	c.1156	p.S386A	0.26	NULL	HMMPfam_DUF590	-	no_errors
ZNF445	353274	broad.mit.edu	36	3	44471659	44471659	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	44471659	44471659	C	G	SNP	ZNF445	NM_181489	human	genbank	54_36p	-1	validated	missense	c.387	p.L129F	1	"HMMPfam_SCAN,HMMSmart_SCAN"	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF167	55888	broad.mit.edu	36	3	44586966	44586966	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	44586966	44586966	C	G	SNP	ZNF167	NM_018651	human	genbank	54_36p	1	validated	missense	c.1360	p.L454V	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF35	7584	broad.mit.edu	36	3	44676299	44676299	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	44676299	44676299	G	A	SNP	ZNF35	NM_003420	human	genbank	54_36p	1	validated	silent	c.1440	p.G480	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
TGM4	7047	broad.mit.edu	36	3	44927870	44927870	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	44927870	44927870	G	T	SNP	TGM4	NM_003241	human	genbank	54_36p	1	validated	silent	c.1881	p.L627	1	"superfamily_Transglut_C,HMMPfam_Transglut_C"	"superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C"	-	no_errors
CCR3	1232	broad.mit.edu	36	3	46281819	46281819	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	46281819	46281819	G	T	SNP	CCR3	NM_001837	human	genbank	54_36p	1	reviewed	missense	c.166	p.V56L	0.89	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RTP3	83597	broad.mit.edu	36	3	46517046	46517046	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	46517046	46517046	C	T	SNP	RTP3	NM_031440	human	genbank	54_36p	1	provisional	silent	c.352	p.L118	0.94	NULL	NULL	-	no_errors
NBEAL2	23218	broad.mit.edu	36	3	47013841	47013841	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	47013841	47013841	C	G	SNP	NBEAL2	NM_015175	human	genbank	54_36p	1	validated	missense	c.2738	p.P913R	0.25	NULL	"superfamily_ARM repeat,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
NBEAL2	23218	broad.mit.edu	36	3	47014167	47014167	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	47014167	47014167	C	A	SNP	NBEAL2	NM_015175	human	genbank	54_36p	1	validated	silent	c.2937	p.I979	1	NULL	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
NBEAL2	23218	broad.mit.edu	36	3	47021022	47021023	+	Missense_Mutation	DNP	TA	TA	CC	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	TA	TA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	47021022	47021023	TA	CC	DNP	NBEAL2	NM_015175	human	genbank	54_36p	1	validated	missense	c.6232_6233	p.Y2078P	1.000:1.000	"HMMPfam_Beach,superfamily_BEACH domain"	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
SETD2	29072	broad.mit.edu	36	3	47073750	47073750	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	47073750	47073750	A	T	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	nonsense	c.5019	p.Y1673*	1	NULL	"superfamily_Ferritin/RR_like,superfamily_SSF82199,HMMSmart_AWS,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_SRI_2"	-	no_errors
SETD2	29072	broad.mit.edu	36	3	47100875	47100875	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	47100875	47100875	A	T	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	missense	c.3890	p.I1297N	1	NULL	"HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,HMMSmart_AWS,superfamily_Ferritin/RR_like,HMMPfam_SRI_2,superfamily_SSF82199"	-	no_errors
CSPG5	10675	broad.mit.edu	36	3	47593426	47593426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	47593426	47593426	C	T	SNP	CSPG5	NM_006574	human	genbank	54_36p	-1	validated	missense	c.1094	p.R365Q	0.2	NULL	"HMMPfam_Chon_Sulph_att,HMMSmart_EGF,HMMPfam_Neural_ProG_Cyt"	-	no_errors
DHX30	22907	broad.mit.edu	36	3	47857576	47857577	+	Missense_Mutation	DNP	AG	AG	CA	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	47857576	47857577	AG	CA	DNP	DHX30	NM_138615	human	genbank	54_36p	1	reviewed	missense	c.572_573	p.E191A	1.000:0.998	NULL	"superfamily_dsRNA-binding domain-like,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
DHX30	22907	broad.mit.edu	36	3	47866108	47866127	+	Splice_Site	DEL	GCCCTGTGTTCCCTAGGGAG	-	GCCCTGTGTTCCCTAGGGAG	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	GCCCTGTGTTCCCTAGGGAG	GCCCTGTGTTCCCTAGGGAG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	47866108	47866127	GCCCTGTGTTCCCTAGGGAG	-	DEL	DHX30	NM_138615	human	genbank	54_36p	1	reviewed	splice_site_del	c.3192-16_3192-1	e19-1	0.067:0.064:0.006:0.001:0.001:0.000:0.000:0.003:0.149:0.922:0.967:0.971:0.975:0.970:1.000:1.000:1.000:1.000:1.000:0.996	-	-	"(deletion:intron[47866049,47866123], cds_exon[47866124,47866263])"	no_errors
ZNF589	51385	broad.mit.edu	36	3	48285204	48285204	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	48285204	48285204	G	T	SNP	ZNF589	NM_016089	human	genbank	54_36p	1	validated	missense	c.1019	p.G340V	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PLXNB1	5364	broad.mit.edu	36	3	48436043	48436043	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48436043	48436043	T	C	SNP	PLXNB1	NM_002673	human	genbank	54_36p	-1	validated	missense	c.2656	p.I886V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ATRIP	84126	broad.mit.edu	36	3	48476710	48476710	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48476710	48476710	A	G	SNP	ATRIP	NM_130384	human	genbank	54_36p	1	reviewed	missense	c.1253	p.H418R	1	NULL	NULL	-	no_errors
ATRIP	84126	broad.mit.edu	36	3	48481410	48481410	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48481410	48481410	C	T	SNP	ATRIP	NM_130384	human	genbank	54_36p	1	reviewed	silent	c.2232	p.V744	1	NULL	NULL	-	no_errors
PFKFB4	5210	broad.mit.edu	36	3	48551058	48551058	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48551058	48551058	T	A	SNP	PFKFB4	NM_004567	human	genbank	54_36p	-1	provisional	splice_site	c.511-2	e7-2	1	-	-	-	no_errors
COL7A1	1294	broad.mit.edu	36	3	48584454	48584454	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	48584454	48584454	C	G	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	missense	c.7052	p.G2351A	1	HMMPfam_Collagen	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1"	-	no_errors
COL7A1	1294	broad.mit.edu	36	3	48589336	48589336	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48589336	48589336	G	A	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	silent	c.5589	p.G1863	0.07	HMMPfam_Collagen	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
COL7A1	1294	broad.mit.edu	36	3	48600780	48600780	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	48600780	48600780	C	T	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	silent	c.2649	p.L883	0.89	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like"	-	no_errors
UQCRC1	7384	broad.mit.edu	36	3	48618282	48618283	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48618282	48618283	CC	AA	DNP	UQCRC1	NM_003365	human	genbank	54_36p	-1	validated	missense	c.222_221	p.W74F	1.000:1.000	"superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16"	"superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16,HMMPfam_Peptidase_M16_C"	-	no_errors
SLC26A6	65010	broad.mit.edu	36	3	48645960	48645960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48645960	48645960	G	T	SNP	SLC26A6	NM_022911	human	genbank	54_36p	-1	reviewed	missense	c.136	p.R46S	0.03	NULL	"PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_Anti-sigma factor antagonist SpoIIaa,HMMPfam_STAS"	-	no_errors
CELSR3	1951	broad.mit.edu	36	3	48661230	48661230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48661230	48661230	C	A	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	missense	c.6703	p.A2235S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CELSR3	1951	broad.mit.edu	36	3	48672381	48672381	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	48672381	48672381	C	A	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	silent	c.2691	p.L897	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
CELSR3	1951	broad.mit.edu	36	3	48674196	48674196	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	48674196	48674196	C	T	SNP	CELSR3	NM_001407	human	genbank	54_36p	-1	reviewed	silent	c.876	p.G292	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
WDR6	11180	broad.mit.edu	36	3	49024648	49024648	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	49024648	49024648	C	T	SNP	WDR6	NM_018031	human	genbank	54_36p	1	reviewed	missense	c.677	p.T226I	0.99	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LAMB2	3913	broad.mit.edu	36	3	49136172	49136172	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	49136172	49136172	C	T	SNP	LAMB2	NM_002292	human	genbank	54_36p	-1	reviewed	missense	c.3790	p.E1264K	1	NULL	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
USP4	7375	broad.mit.edu	36	3	49312978	49312978	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	49312978	49312978	G	A	SNP	USP4	NM_003363	human	genbank	54_36p	-1	validated	missense	c.1438	p.P480S	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"HMMSmart_SM00695,HMMPfam_DUF1055,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
BSN	8927	broad.mit.edu	36	3	49655338	49655338	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	49655338	49655338	G	T	SNP	BSN	NM_003458	human	genbank	54_36p	1	validated	nonsense	c.1267	p.G423*	0	NULL	"HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF"	-	no_errors
BSN	8927	broad.mit.edu	36	3	49663128	49663128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	49663128	49663128	C	T	SNP	BSN	NM_003458	human	genbank	54_36p	1	validated	missense	c.1598	p.P533L	0.95	NULL	"HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF"	-	no_errors
BSN	8927	broad.mit.edu	36	3	49675367	49675367	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	49675367	49675367	G	A	SNP	BSN	NM_003458	human	genbank	54_36p	1	validated	missense	c.10772	p.R3591H	1	NULL	"HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF"	-	no_errors
RNF123	63891	broad.mit.edu	36	3	49726570	49726570	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	49726570	49726570	T	A	SNP	RNF123	NM_022064	human	genbank	54_36p	1	reviewed	missense	c.2969	p.L990Q	1	NULL	"HMMPfam_SPRY,HMMSmart_SM00449,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
C3orf54	389119	broad.mit.edu	36	3	49817266	49817266	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	49817266	49817266	C	T	SNP	C3orf54	NM_203370	human	genbank	54_36p	1	validated	missense	c.706	p.R236W	1	NULL	NULL	-	no_errors
UBA7	7318	broad.mit.edu	36	3	49826037	49826037	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	49826037	49826037	A	T	SNP	UBA7	NM_003335	human	genbank	54_36p	-1	reviewed	missense	c.104	p.V35D	1	"superfamily_MoeB,HMMPfam_ThiF"	"PatternScan_UBIQUITIN_ACTIVAT_1,superfamily_MoeB,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C"	-	no_errors
CAMKV	79012	broad.mit.edu	36	3	49873963	49873963	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	49873963	49873963	C	T	SNP	CAMKV	NM_024046	human	genbank	54_36p	-1	validated	silent	c.354	p.S118	0.96	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	-	no_errors
MST1R	4486	broad.mit.edu	36	3	49907684	49907684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	49907684	49907684	G	C	SNP	MST1R	NM_002447	human	genbank	54_36p	-1	validated	missense	c.3191	p.S1064C	0.01	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MST1R	4486	broad.mit.edu	36	3	49908185	49908185	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	49908185	49908185	C	A	SNP	MST1R	NM_002447	human	genbank	54_36p	-1	validated	missense	c.2929	p.V977F	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MST1R	4486	broad.mit.edu	36	3	49914844	49914844	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	49914844	49914844	G	T	SNP	MST1R	NM_002447	human	genbank	54_36p	-1	validated	missense	c.1203	p.F401L	1	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain"	###############################################################################################################################################################################################################################################################	-	no_errors
MON1A	84315	broad.mit.edu	36	3	49922959	49922959	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	49922959	49922959	G	A	SNP	MON1A	NM_032355	human	genbank	54_36p	-1	validated	missense	c.976	p.R326C	0.97	HMMPfam_Mon1	HMMPfam_Mon1	-	no_errors
MON1A	84315	broad.mit.edu	36	3	49924412	49924412	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	49924412	49924412	C	T	SNP	MON1A	NM_032355	human	genbank	54_36p	-1	validated	missense	c.164	p.R55H	1	NULL	HMMPfam_Mon1	-	no_errors
RBM6	10180	broad.mit.edu	36	3	50070975	50070975	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	50070975	50070975	C	G	SNP	RBM6	NM_005777	human	genbank	54_36p	1	provisional	silent	c.2106	p.G702	1	superfamily_SSF54928	"superfamily_SSF54928,HMMSmart_RRM,HMMSmart_ZnF_C2H2,HMMSmart_G_patch,HMMPfam_G-patch"	-	no_errors
GNAT1	2779	broad.mit.edu	36	3	50205602	50205602	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	50205602	50205602	A	C	SNP	GNAT1	NM_000172	human	genbank	54_36p	1	reviewed	missense	c.139	p.K47Q	1	"superfamily_SSF52540,HMMPfam_G-alpha"	"superfamily_SSF52540,HMMPfam_G-alpha,superfamily_Transducn_insert"	-	no_errors
SLC38A3	10991	broad.mit.edu	36	3	50232512	50232512	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	50232512	50232512	C	A	SNP	SLC38A3	ENST00000341160	human	ensembl	54_36p	1	known	missense	c.1414	p.L472M	0.98	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
C3orf45	132228	broad.mit.edu	36	3	50299592	50299592	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	50299592	50299592	C	G	SNP	C3orf45	NM_153215	human	genbank	54_36p	1	predicted	missense	c.450	p.S150R	1	NULL	NULL	-	no_errors
HYAL3	8372	broad.mit.edu	36	3	50307756	50307756	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	50307756	50307756	G	T	SNP	HYAL3	NM_003549	human	genbank	54_36p	-1	reviewed	silent	c.282	p.G94	0.13	"HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases,PatternScan_EGF_1,PatternScan_EGF_2"	-	no_errors
HYAL3	8372	broad.mit.edu	36	3	50307982	50307982	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	50307982	50307982	C	T	SNP	HYAL3	NM_003549	human	genbank	54_36p	-1	reviewed	missense	c.56	p.C19Y	0	NULL	"HMMPfam_Glyco_hydro_56,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_(Trans)glycosidases"	-	no_errors
HYAL2	8692	broad.mit.edu	36	3	50332670	50332670	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Sequenom;Capture			Illumina GAIIx	3	50332670	50332670	C	G	SNP	HYAL2	NM_003773	human	genbank	54_36p	-1	reviewed	silent	c.255	p.L85	1	"HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases,PatternScan_EGF_1,PatternScan_EGF_2"	-	no_errors
ZMYND10	51364	broad.mit.edu	36	3	50357653	50357653	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	50357653	50357653	T	C	SNP	ZMYND10	NM_015896	human	genbank	54_36p	-1	validated	missense	c.107	p.H36R	1	NULL	"HMMPfam_zf-MYND,PatternScan_ZF_MYND_1"	-	no_errors
MAPKAPK3	7867	broad.mit.edu	36	3	50630116	50630116	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	50630116	50630116	T	G	SNP	MAPKAPK3	NM_004635	human	genbank	54_36p	1	reviewed	missense	c.116	p.V39G	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DOCK3	1795	broad.mit.edu	36	3	51102713	51102713	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	51102713	51102713	C	T	SNP	DOCK3	NM_004947	human	genbank	54_36p	1	validated	missense	c.604	p.R202C	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_Ded_cyto"	-	no_errors
DOCK3	1795	broad.mit.edu	36	3	51374417	51374417	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	51374417	51374417	G	C	SNP	DOCK3	NM_004947	human	genbank	54_36p	1	validated	silent	c.5094	p.L1698	1	NULL	"superfamily_SH3-domain,HMMPfam_Ded_cyto,HMMPfam_SH3_2"	-	no_errors
DOCK3	1795	broad.mit.edu	36	3	51375143	51375143	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	51375143	51375143	G	A	SNP	DOCK3	NM_004947	human	genbank	54_36p	1	validated	missense	c.5291	p.R1764Q	1	NULL	"superfamily_SH3-domain,HMMPfam_Ded_cyto,HMMPfam_SH3_2"	-	no_errors
MANF	7873	broad.mit.edu	36	3	51401519	51401519	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	51401519	51401519	A	C	SNP	ARMET	NM_006010	human	genbank	54_36p	1	reviewed	missense	c.517	p.K173Q	1	HMMPfam_Armet	HMMPfam_Armet	-	no_start_codon
VPRBP	9730	broad.mit.edu	36	3	51492812	51492812	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	51492812	51492812	G	A	SNP	VPRBP	ENST00000273612	human	ensembl	54_36p	-1	known	missense	c.73	p.H25Y	1	NULL	"superfamily_ARM repeat,HMMSmart_SM00667,HMMPfam_LisH,superfamily_WD40 repeat-like"	-	no_errors
RAD54L2	23132	broad.mit.edu	36	3	51638464	51638464	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	51638464	51638464	G	A	SNP	RAD54L2	NM_015106	human	genbank	54_36p	1	validated	missense	c.92	p.R31H	1	NULL	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
RAD54L2	23132	broad.mit.edu	36	3	51639823	51639823	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	51639823	51639823	G	T	SNP	RAD54L2	NM_015106	human	genbank	54_36p	1	validated	missense	c.337	p.V113F	1	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
IQCF3	401067	broad.mit.edu	36	3	51839526	51839526	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	51839526	51839526	G	A	SNP	IQCF3	NM_001085479	human	genbank	54_36p	1	provisional	missense	c.134	p.R45H	0.79	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
RRP9	9136	broad.mit.edu	36	3	51950503	51950503	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	51950503	51950503	C	A	SNP	RRP9	NM_004704	human	genbank	54_36p	-1	provisional	missense	c.132	p.K44N	0.99	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
DUSP7	1849	broad.mit.edu	36	3	52059944	52059944	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	3	52059944	52059944	G	A	SNP	DUSP7	NM_001947	human	genbank	54_36p	-1	provisional	missense	c.1034	p.S345L	0.99	NULL	"HMMSmart_SM00450,HMMPfam_Rhodanese,superfamily_Rhodanese/Cell cycle control phosphatase,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195"	-	no_errors
WDR82	80335	broad.mit.edu	36	3	52270475	52270475	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52270475	52270475	C	G	SNP	WDR82	NM_025222	human	genbank	54_36p	-1	validated	missense	c.387	p.K129N	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
DNAH1	25981	broad.mit.edu	36	3	52332863	52332863	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52332863	52332863	G	A	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	splice_site	c.334-1	e2-1	1	-	-	-	no_errors
DNAH1	25981	broad.mit.edu	36	3	52361049	52361049	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	52361049	52361049	C	A	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	missense	c.2761	p.L921I	0.15	NULL	"HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DNAH1	25981	broad.mit.edu	36	3	52369044	52369044	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52369044	52369044	G	T	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	missense	c.4480	p.V1494F	0.97	NULL	"HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH1	25981	broad.mit.edu	36	3	52378894	52378894	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	52378894	52378894	T	C	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	missense	c.5957	p.M1986T	1	"HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH1	25981	broad.mit.edu	36	3	52398530	52398530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	52398530	52398530	C	T	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	missense	c.9701	p.T3234M	0.03	NULL	"HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH1	25981	broad.mit.edu	36	3	52405674	52405674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52405674	52405674	G	A	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	1	known	missense	c.11623	p.V3875M	0.67	HMMPfam_Dynein_heavy	"HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
BAP1	8314	broad.mit.edu	36	3	52415413	52415413	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	52415413	52415413	G	A	SNP	BAP1	NM_004656	human	genbank	54_36p	-1	reviewed	missense	c.679	p.R227C	1	superfamily_Cysteine proteinases	"HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases"	-	no_errors
SEMA3G	56920	broad.mit.edu	36	3	52447095	52447095	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52447095	52447095	C	T	SNP	SEMA3G	NM_020163	human	genbank	54_36p	-1	provisional	missense	c.1670	p.R557H	1	"HMMSmart_PSI,superfamily_Plexin-like_fold"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
SEMA3G	56920	broad.mit.edu	36	3	52450445	52450445	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52450445	52450445	C	T	SNP	SEMA3G	NM_020163	human	genbank	54_36p	-1	provisional	missense	c.688	p.A230T	0	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema"	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMSmart_IG,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726"	-	no_errors
NISCH	11188	broad.mit.edu	36	3	52499841	52499841	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52499841	52499841	C	A	SNP	NISCH	NM_007184	human	genbank	54_36p	1	validated	missense	c.3694	p.L1232M	1	NULL	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1,PatternScan_CYTOCHROME_P450"	-	no_errors
NISCH	11188	broad.mit.edu	36	3	52501058	52501058	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52501058	52501058	C	G	SNP	NISCH	NM_007184	human	genbank	54_36p	1	validated	silent	c.4035	p.L1345	1	NULL	"HMMPfam_LRR_1,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,PatternScan_CYTOCHROME_P450,HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1"	-	no_errors
STAB1	23166	broad.mit.edu	36	3	52513844	52513844	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	52513844	52513844	A	G	SNP	STAB1	NM_015136	human	genbank	54_36p	1	reviewed	missense	c.1289	p.H430R	0.98	"superfamily_FAS1 domain,HMMSmart_SM00554"	###############################################################################################################################################################################################################################################################	-	no_errors
SPCS1	28972	broad.mit.edu	36	3	52715333	52715333	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	52715333	52715333	C	A	SNP	SPCS1	NM_014041	human	genbank	54_36p	1	validated	missense	c.31	p.Q11K	1	NULL	HMMPfam_SPC12	-	no_errors
ITIH1	3697	broad.mit.edu	36	3	52787494	52787494	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52787494	52787494	C	A	SNP	ITIH1	NM_002215	human	genbank	54_36p	1	validated	silent	c.237	p.A79	0	"HMMSmart_SM00609,HMMPfam_VIT"	"HMMSmart_SM00609,HMMPfam_VIT,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
ITIH1	3697	broad.mit.edu	36	3	52789409	52789409	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52789409	52789409	A	T	SNP	ITIH1	NM_002215	human	genbank	54_36p	1	validated	missense	c.658	p.T220S	0	NULL	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like"	-	no_errors
ITIH1	3697	broad.mit.edu	36	3	52797288	52797288	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	52797288	52797288	T	A	SNP	ITIH1	NM_002215	human	genbank	54_36p	1	validated	missense	c.2006	p.V669E	1	NULL	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like"	-	no_errors
ITIH3	3699	broad.mit.edu	36	3	52803899	52803899	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	52803899	52803899	C	T	SNP	ITIH3	NM_002217	human	genbank	54_36p	1	validated	missense	c.40	p.L14F	1	NULL	"HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
CACNA1D	776	broad.mit.edu	36	3	53506497	53506497	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	53506497	53506497	C	T	SNP	CACNA1D	NM_000720	human	genbank	54_36p	1	validated	nonsense	c.346	p.R116*	1	superfamily_SSF81324	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1D	776	broad.mit.edu	36	3	53728820	53728820	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	53728820	53728820	A	G	SNP	CACNA1D	NM_000720	human	genbank	54_36p	1	validated	splice_site	c.1539-2	e12-2	1	-	-	-	no_errors
CACNA1D	776	broad.mit.edu	36	3	53810348	53810348	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	53810348	53810348	A	C	SNP	CACNA1D	NM_000720	human	genbank	54_36p	1	validated	missense	c.5324	p.N1775T	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_SSF81324"	-	no_errors
CHDH	55349	broad.mit.edu	36	3	53827088	53827089	+	Frame_Shift_Del	DEL	CA	-	CA	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	CA	CA	-	-	CA	CA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	53827088	53827089	CA	-	DEL	CHDH	NM_018397	human	genbank	54_36p	-1	validated	frame_shift_del	c.1541_1540	p.C514fs	1.000:1.000	"superfamily_SSF51905,superfamily_SSF54373,HMMPfam_GMC_oxred_C"	"superfamily_SSF51905,HMMPfam_GMC_oxred_N,PatternScan_GMC_OXRED_1,PatternScan_GMC_OXRED_2,superfamily_SSF54373,HMMPfam_GMC_oxred_C"	"(deletion:cds_exon[53826844,53827262])"	no_errors
CHDH	55349	broad.mit.edu	36	3	53827159	53827159	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	53827159	53827159	G	A	SNP	CHDH	NM_018397	human	genbank	54_36p	-1	validated	silent	c.1470	p.S490	0.94	"superfamily_SSF51905,superfamily_SSF54373,HMMPfam_GMC_oxred_C"	"superfamily_SSF51905,HMMPfam_GMC_oxred_N,PatternScan_GMC_OXRED_1,PatternScan_GMC_OXRED_2,superfamily_SSF54373,HMMPfam_GMC_oxred_C"	-	no_errors
IL17RB	55540	broad.mit.edu	36	3	53857734	53857734	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	53857734	53857734	G	A	SNP	IL17RB	NM_018725	human	genbank	54_36p	1	reviewed	missense	c.64	p.V22I	0.93	NULL	HMMPfam_SEFIR	-	no_errors
C3orf63	23272	broad.mit.edu	36	3	56642224	56642224	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	56642224	56642224	A	T	SNP	C3orf63	NM_015224	human	genbank	54_36p	-1	validated	nonsense	c.2324	p.L775*	1	NULL	NULL	-	no_errors
C3orf63	23272	broad.mit.edu	36	3	56642329	56642329	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	56642329	56642329	A	G	SNP	C3orf63	NM_015224	human	genbank	54_36p	-1	validated	missense	c.2219	p.I740T	0.96	NULL	NULL	-	no_errors
ARHGEF3	50650	broad.mit.edu	36	3	56746316	56746316	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	56746316	56746316	G	C	SNP	ARHGEF3	NM_019555	human	genbank	54_36p	-1	reviewed	missense	c.978	p.D326E	0.68	"superfamily_DBL homology domain (DH-domain),HMMSmart_SM00233,superfamily_PH domain-like"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH"	-	no_errors
DNAH12	201625	broad.mit.edu	36	3	57484582	57484582	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	57484582	57484582	A	G	SNP	DNAH12L	ENST00000311202	human	ensembl	54_36p	-1	known	silent	c.240	p.D80	0.42	NULL	NULL	-	no_errors
FAM116A	201627	broad.mit.edu	36	3	57622228	57622228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	57622228	57622228	G	C	SNP	FAM116A	NM_152678	human	genbank	54_36p	-1	validated	missense	c.604	p.P202A	1	HMMPfam_DUF1630	HMMPfam_DUF1630	-	no_errors
FLNB	2317	broad.mit.edu	36	3	58072963	58072963	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	58072963	58072963	G	C	SNP	FLNB	NM_001457	human	genbank	54_36p	1	validated	missense	c.2623	p.A875P	1	"superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN"	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Ig_E-set,HMMPfam_Filamin,HMMSmart_IG_FLMN"	-	no_errors
PTPRG	5793	broad.mit.edu	36	3	61523076	61523097	+	Splice_Site	DEL	GTGCTTCCCCGGTGAGTGCCGG	-	GTGCTTCCCCGGTGAGTGCCGG	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	GTGCTTCCCCGGTGAGTGCCGG	GTGCTTCCCCGGTGAGTGCCGG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	61523076	61523097	GTGCTTCCCCGGTGAGTGCCGG	-	DEL	PTPRG	NM_002841	human	genbank	54_36p	1	reviewed	splice_site_del	c.75_85	p.C26fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000	NULL	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	"(deletion:cds_exon[61523002,61523086], intron[61523087,61709591])"	no_errors
PTPRG	5793	broad.mit.edu	36	3	62164144	62164144	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	62164144	62164144	C	G	SNP	PTPRG	NM_002841	human	genbank	54_36p	1	reviewed	missense	c.1635	p.S545R	0.99	NULL	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRG	5793	broad.mit.edu	36	3	62164218	62164218	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	62164218	62164218	C	T	SNP	PTPRG	NM_002841	human	genbank	54_36p	1	reviewed	missense	c.1709	p.P570L	0.01	NULL	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
PTPRG	5793	broad.mit.edu	36	3	62164618	62164618	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	62164618	62164618	C	T	SNP	PTPRG	NM_002841	human	genbank	54_36p	1	reviewed	silent	c.2109	p.R703	0.93	NULL	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
CADPS	8618	broad.mit.edu	36	3	62474372	62474372	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	62474372	62474372	T	G	SNP	CADPS	NM_183394	human	genbank	54_36p	-1	reviewed	missense	c.2631	p.Q877H	1	HMMPfam_DUF1041	"HMMSmart_C2,HMMPfam_C2,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_DUF1041"	-	no_errors
CADPS	8618	broad.mit.edu	36	3	62493715	62493715	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	62493715	62493715	A	T	SNP	CADPS	NM_003716	human	genbank	54_36p	-1	reviewed	missense	c.2162	p.V721D	1	NULL	"HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041"	-	no_errors
CADPS	8618	broad.mit.edu	36	3	62714458	62714459	+	Missense_Mutation	DNP	TG	TG	CA	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	62714458	62714459	TG	CA	DNP	CADPS	NM_003716	human	genbank	54_36p	-1	reviewed	missense	c.586_585	p.M196V	1.000:0.978	NULL	"HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like"	-	no_errors
SNTN	132203	broad.mit.edu	36	3	63624748	63624748	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	63624748	63624748	C	A	SNP	SNTN	NM_001080537	human	genbank	54_36p	1	provisional	silent	c.381	p.L127	0.93	superfamily_SSF47473	superfamily_SSF47473	-	no_errors
PRICKLE2	166336	broad.mit.edu	36	3	64060310	64060310	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	64060310	64060310	G	T	SNP	PRICKLE2	NM_198859	human	genbank	54_36p	-1	validated	silent	c.1992	p.P664	0.99	NULL	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
MAGI1	9223	broad.mit.edu	36	3	65317511	65317511	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	65317511	65317511	T	A	SNP	MAGI1	NM_001033057	human	genbank	54_36p	-1	reviewed	missense	c.3971	p.E1324V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LRIG1	26018	broad.mit.edu	36	3	66513795	66513795	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	66513795	66513795	G	T	SNP	LRIG1	NM_015541	human	genbank	54_36p	-1	validated	missense	c.2951	p.A984D	0	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
KBTBD8	84541	broad.mit.edu	36	3	67136980	67136980	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	67136980	67136980	A	G	SNP	KBTBD8	NM_032505	human	genbank	54_36p	1	provisional	missense	c.821	p.K274R	1	superfamily_Galactose oxidase central domain	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
FAM19A1	407738	broad.mit.edu	36	3	68549253	68549253	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	68549253	68549253	C	T	SNP	FAM19A1	NM_213609	human	genbank	54_36p	1	reviewed	silent	c.252	p.C84	1	NULL	NULL	-	no_errors
C3orf64	285203	broad.mit.edu	36	3	69140344	69140344	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	69140344	69140344	C	T	SNP	C3orf64	NM_173654	human	genbank	54_36p	-1	provisional	missense	c.236	p.C79Y	1	NULL	"HMMPfam_DUF563,PatternScan_ER_TARGET"	-	no_errors
UBA3	9039	broad.mit.edu	36	3	69193968	69193968	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	69193968	69193968	C	T	SNP	UBA3	NM_003968	human	genbank	54_36p	-1	reviewed	missense	c.746	p.C249Y	1	superfamily_Activating enzymes of the ubiquitin-like proteins	"superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_E2_bind"	-	no_errors
ARL6IP5	10550	broad.mit.edu	36	3	69236363	69236363	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	69236363	69236363	A	C	SNP	ARL6IP5	NM_006407	human	genbank	54_36p	1	reviewed	missense	c.453	p.K151N	1	HMMPfam_PRA1	HMMPfam_PRA1	-	no_errors
LMOD3	56203	broad.mit.edu	36	3	69240939	69240939	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	69240939	69240939	C	T	SNP	LMOD3	NM_198271	human	genbank	54_36p	-1	validated	silent	c.1680	p.A560	0.65	NULL	"HMMPfam_Tropomodulin,superfamily_RNI-like,HMMPfam_WH2"	-	no_errors
MITF	4286	broad.mit.edu	36	3	70091212	70091212	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	70091212	70091212	G	T	SNP	MITF	NM_198159	human	genbank	54_36p	1	reviewed	missense	c.1112	p.R371L	1	superfamily_HLH_basic	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
MITF	4286	broad.mit.edu	36	3	70096797	70096797	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	70096797	70096797	A	C	SNP	MITF	NM_198159	human	genbank	54_36p	1	reviewed	missense	c.1271	p.N424T	1	NULL	"HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic"	-	no_errors
GPR27	2850	broad.mit.edu	36	3	71886766	71886766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	71886766	71886766	C	T	SNP	GPR27	NM_018971	human	genbank	54_36p	1	provisional	silent	c.876	p.L292	0.93	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
SHQ1	55164	broad.mit.edu	36	3	72964217	72964217	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	72964217	72964217	G	T	SNP	SHQ1	NM_018130	human	genbank	54_36p	-1	validated	missense	c.592	p.H198N	1	NULL	"superfamily_HSP20_chap,HMMPfam_CS,HMMPfam_SHQ1"	-	no_errors
FLJ10213	55096	broad.mit.edu	36	3	73194204	73194204	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	73194204	73194204	A	G	SNP	FLJ10213	NM_018029	human	genbank	54_36p	1	predicted	silent	c.282	p.Q94	0.01	"HMMPfam_BDV_P40,superfamily_P40_nucleoprot_BD-vir"	"HMMPfam_BDV_P40,superfamily_P40_nucleoprot_BD-vir"	-	no_errors
PDZRN3	23024	broad.mit.edu	36	3	73515603	73515603	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	73515603	73515603	T	C	SNP	PDZRN3	NM_015009	human	genbank	54_36p	-1	provisional	missense	c.2804	p.K935R	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
PDZRN3	23024	broad.mit.edu	36	3	73516624	73516640	+	Frame_Shift_Del	DEL	CGGTGGCGTCGTCGCCA	-	CGGTGGCGTCGTCGCCA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CGGTGGCGTCGTCGCCA	CGGTGGCGTCGTCGCCA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	73516624	73516640	CGGTGGCGTCGTCGCCA	-	DEL	PDZRN3	NM_015009	human	genbank	54_36p	-1	provisional	frame_shift_del	c.1783_1767	p.G590fs	0.052:0.011:0.938:0.987:0.992:1.000:1.000:0.986:1.000:1.000:0.998:1.000:0.996:0.413:0.446:0.946:0.945	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"(deletion:cds_exon[73515206,73516771])"	no_errors
PDZRN3	23024	broad.mit.edu	36	3	73517521	73517521	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	73517521	73517521	C	G	SNP	PDZRN3	NM_015009	human	genbank	54_36p	-1	provisional	missense	c.1624	p.V542L	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00184,superfamily_TRAF domain-like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
CNTN3	5067	broad.mit.edu	36	3	74429864	74429864	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	74429864	74429864	C	G	SNP	CNTN3	NM_020872	human	genbank	54_36p	-1	validated	missense	c.2335	p.G779R	1	"superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
FRG2C	100288801	broad.mit.edu	36	3	75797676	75797676	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	75797676	75797676	C	T	SNP	FRG2C	ENST00000308062	human	ensembl	54_36p	1	known	missense	c.643	p.R215W	0.43	NULL	NULL	-	no_errors
ZNF717	401074	broad.mit.edu	36	3	75869508	75869516	+	Intron	DEL	ACATTCATT	-	ACATTCATT	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	ACATTCATT	ACATTCATT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	75869508	75869516	ACATTCATT	-	DEL	LOC401074	XM_001714392	human	genbank	54_36p	1	model	intronic	c.961-2926_961-2918	e4-2918	0.996:0.997:0.958:0.251:0.222:0.116:0.000:0.001:0.007	-	-	"(deletion:intron[75804611,75872433])"	no_errors
ROBO2	6092	broad.mit.edu	36	3	77682761	77682761	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	77682761	77682761	T	A	SNP	ROBO2	NM_002942	human	genbank	54_36p	1	reviewed	missense	c.1162	p.Y388N	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ROBO2	6092	broad.mit.edu	36	3	77734114	77734114	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	3	77734114	77734114	T	A	SNP	ROBO2	NM_002942	human	genbank	54_36p	1	reviewed	missense	c.2918	p.I973N	1	NULL	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
ROBO1	6091	broad.mit.edu	36	3	78732069	78732069	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	78732069	78732069	A	T	SNP	ROBO1	NM_002941	human	genbank	54_36p	-1	reviewed	missense	c.4825	p.S1609T	1	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
GBE1	2632	broad.mit.edu	36	3	81668842	81668842	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	81668842	81668842	G	A	SNP	GBE1	NM_000158	human	genbank	54_36p	-1	reviewed	silent	c.1713	p.D571	1	superfamily_(Trans)glycosidases	"superfamily_E set domains,HMMPfam_CBM_48,superfamily_(Trans)glycosidases,HMMSmart_SM00642,HMMPfam_Alpha-amylase,superfamily_Glycosyl hydrolase domain,HMMPfam_Alpha-amylase_C"	-	no_errors
HTR1F	3355	broad.mit.edu	36	3	88123278	88123278	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	88123278	88123278	T	A	SNP	HTR1F	NM_000866	human	genbank	54_36p	1	validated	missense	c.689	p.L230H	0.9	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZNF654	55279	broad.mit.edu	36	3	88271320	88271320	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	88271320	88271320	C	T	SNP	ZNF654	NM_018293	human	genbank	54_36p	1	validated	missense	c.170	p.A57V	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF654	55279	broad.mit.edu	36	3	88271555	88271555	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	88271555	88271555	T	C	SNP	ZNF654	NM_018293	human	genbank	54_36p	1	validated	silent	c.405	p.P135	0	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
EPHA3	2042	broad.mit.edu	36	3	89539205	89539205	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	89539205	89539205	T	A	SNP	EPHA3	NM_005233	human	genbank	54_36p	1	reviewed	missense	c.1691	p.I564N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PROS1	5627	broad.mit.edu	36	3	95094613	95094613	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	95094613	95094613	C	T	SNP	PROS1	NM_000313	human	genbank	54_36p	-1	reviewed	missense	c.1009	p.V337M	0.85	"superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_1"	###############################################################################################################################################################################################################################################################	-	no_errors
ARL13B	200894	broad.mit.edu	36	3	95205197	95205197	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	95205197	95205197	C	T	SNP	ARL13B	NM_182896	human	genbank	54_36p	1	validated	silent	c.135	p.Y45	0.52	"HMMPfam_Arf,HMMSmart_SM00177,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Arf,HMMSmart_SM00177,HMMSmart_SM00178,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
EPHA6	285220	broad.mit.edu	36	3	98794229	98794229	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	98794229	98794229	C	T	SNP	EPHA6	NM_001080448	human	genbank	54_36p	1	provisional	missense	c.2470	p.P824S	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
GABRR3	200959	broad.mit.edu	36	3	99214060	99214060	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	99214060	99214060	G	A	SNP	GABRR3	NM_001105580	human	genbank	54_36p	-1	provisional	silent	c.348	p.D116	1	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	pseudogene
OR5H1	26341	broad.mit.edu	36	3	99335088	99335088	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	99335088	99335088	A	T	SNP	OR5H1	NM_001005338	human	genbank	54_36p	1	provisional	missense	c.857	p.N286I	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5H2	79310	broad.mit.edu	36	3	99484483	99484483	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	99484483	99484483	G	A	SNP	OR5H2	NM_001005482	human	genbank	54_36p	1	provisional	missense	c.62	p.G21E	0.98	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5H2	79310	broad.mit.edu	36	3	99484578	99484578	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	99484578	99484578	C	T	SNP	OR5H2	NM_001005482	human	genbank	54_36p	1	provisional	missense	c.157	p.L53F	0.03	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
CLDND1	56650	broad.mit.edu	36	3	99718361	99718361	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	99718361	99718361	G	C	SNP	CLDND1	NM_001040182	human	genbank	54_36p	-1	validated	silent	c.663	p.L221	0.99	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
GPR15	2838	broad.mit.edu	36	3	99734580	99734580	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	99734580	99734580	C	A	SNP	GPR15	NM_005290	human	genbank	54_36p	1	provisional	missense	c.1013	p.T338N	0.74	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CPOX	1371	broad.mit.edu	36	3	99792569	99792569	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	99792569	99792569	C	A	SNP	CPOX	NM_000097	human	genbank	54_36p	-1	validated	missense	c.677	p.G226V	1	"superfamily_Coprogen_oxidas,HMMPfam_Coprogen_oxidas"	"superfamily_Coprogen_oxidas,HMMPfam_Coprogen_oxidas,PatternScan_COPROGEN_OXIDASE"	-	no_errors
ST3GAL6	10402	broad.mit.edu	36	3	99993426	99993426	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	99993426	99993426	A	G	SNP	ST3GAL6	NM_006100	human	genbank	54_36p	1	provisional	missense	c.808	p.I270V	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
DCBLD2	131566	broad.mit.edu	36	3	100014013	100014013	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	100014013	100014013	A	G	SNP	DCBLD2	NM_080927	human	genbank	54_36p	-1	validated	missense	c.1216	p.F406L	1	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LCCL domain,HMMSmart_SM00603,HMMPfam_LCCL,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1"	-	no_errors
FILIP1L	11259	broad.mit.edu	36	3	101050745	101050745	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	101050745	101050745	A	G	SNP	FILIP1L	NM_182909	human	genbank	54_36p	-1	validated	missense	c.2465	p.V822A	0.99	NULL	"HMMPfam_CortBP2,superfamily_Prefoldin"	-	no_errors
C3orf26	84319	broad.mit.edu	36	3	101363911	101363911	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	101363911	101363911	G	C	SNP	C3orf26	NM_032359	human	genbank	54_36p	1	predicted	missense	c.300	p.K100N	0.05	NULL	superfamily_SSF52540	-	no_errors
TBC1D23	55773	broad.mit.edu	36	3	101503764	101503764	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	101503764	101503764	T	G	SNP	TBC1D23	NM_018309	human	genbank	54_36p	1	validated	missense	c.1256	p.F419C	1	superfamily_Rhodanese/Cell cycle control phosphatase	"HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,superfamily_Rhodanese/Cell cycle control phosphatase"	-	no_errors
NIT2	56954	broad.mit.edu	36	3	101554014	101554014	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	101554014	101554014	C	T	SNP	NIT2	NM_020202	human	genbank	54_36p	1	validated	missense	c.661	p.H221Y	1	superfamily_Ntlse/CNhydtse	"PatternScan_UPF0012,superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase"	-	no_errors
TMEM45A	55076	broad.mit.edu	36	3	101770431	101770431	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	101770431	101770431	A	T	SNP	TMEM45A	NM_018004	human	genbank	54_36p	1	provisional	missense	c.664	p.T222S	1	HMMPfam_DUF716	HMMPfam_DUF716	-	no_errors
SENP7	57337	broad.mit.edu	36	3	102533628	102533628	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	102533628	102533628	G	A	SNP	SENP7	NM_020654	human	genbank	54_36p	-1	validated	silent	c.2589	p.L863	1	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48"	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48"	-	no_errors
CEP97	79598	broad.mit.edu	36	3	102959275	102959275	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	102959275	102959275	C	T	SNP	CEP97	NM_024548	human	genbank	54_36p	1	provisional	nonsense	c.1135	p.R379*	0.88	NULL	"superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMPfam_IQ"	-	no_errors
FAM55C	91775	broad.mit.edu	36	3	103023042	103023042	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	103023042	103023042	A	G	SNP	FAM55C	NM_145037	human	genbank	54_36p	1	validated	missense	c.1234	p.I412V	1	NULL	"HMMPfam_Neurexophilin,superfamily_E set domains"	-	no_errors
NFKBIZ	64332	broad.mit.edu	36	3	103057327	103057327	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	103057327	103057327	G	A	SNP	NFKBIZ	NM_031419	human	genbank	54_36p	1	reviewed	missense	c.1715	p.R572K	0.15	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
ZPLD1	131368	broad.mit.edu	36	3	103670597	103670597	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	103670597	103670597	G	A	SNP	ZPLD1	NM_175056	human	genbank	54_36p	1	provisional	silent	c.909	p.Q303	1	"HMMPfam_Zona_pellucida,HMMSmart_ZP"	"HMMPfam_Zona_pellucida,HMMSmart_ZP"	-	no_errors
ALCAM	214	broad.mit.edu	36	3	106749006	106749006	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	106749006	106749006	A	G	SNP	ALCAM	NM_001627	human	genbank	54_36p	1	validated	silent	c.1323	p.P441	1	"superfamily_Immunoglobulin,HMMSmart_SM00408"	"HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
CBLB	868	broad.mit.edu	36	3	106883277	106883277	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	106883277	106883277	G	C	SNP	CBLB	NM_170662	human	genbank	54_36p	-1	validated	missense	c.2277	p.D759E	0.77	NULL	"HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_SM00165"	-	no_errors
BBX	56987	broad.mit.edu	36	3	108974571	108974571	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	108974571	108974571	T	C	SNP	BBX	NM_020235	human	genbank	54_36p	1	validated	missense	c.1313	p.I438T	0.32	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box,HMMPfam_DUF2028"	-	no_errors
BBX	56987	broad.mit.edu	36	3	108979967	108979967	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	108979967	108979967	C	T	SNP	BBX	NM_020235	human	genbank	54_36p	1	validated	missense	c.2114	p.P705L	1	NULL	"HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box,HMMPfam_DUF2028"	-	no_errors
BBX	56987	broad.mit.edu	36	3	108992784	108992784	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	108992784	108992784	G	T	SNP	BBX	ENST00000402163	human	ensembl	54_36p	1	known	missense	c.1292	p.G431V	1	NULL	"HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box,HMMPfam_DUF2028"	-	no_errors
CD47	961	broad.mit.edu	36	3	109281704	109281704	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	109281704	109281704	G	C	SNP	CD47	NM_001777	human	genbank	54_36p	-1	reviewed	missense	c.224	p.S75C	0	HMMPfam_V-set_CD47	"HMMPfam_V-set_CD47,HMMPfam_CD47"	-	no_errors
HHLA2	11148	broad.mit.edu	36	3	109559411	109559411	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	109559411	109559411	T	A	SNP	HHLA2	NM_007072	human	genbank	54_36p	1	provisional	missense	c.716	p.V239D	0.56	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_C1-set"	-	no_errors
MYH15	22989	broad.mit.edu	36	3	109688052	109688052	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	109688052	109688052	C	T	SNP	MYH15	NM_014981	human	genbank	54_36p	-1	validated	missense	c.943	p.V315I	0.94	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIAA1524	57650	broad.mit.edu	36	3	109753800	109753800	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	109753800	109753800	C	T	SNP	KIAA1524	NM_020890	human	genbank	54_36p	-1	validated	missense	c.2518	p.E840K	1	NULL	superfamily_ARM repeat	-	no_errors
KIAA1524	57650	broad.mit.edu	36	3	109764708	109764708	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	109764708	109764708	C	G	SNP	KIAA1524	NM_020890	human	genbank	54_36p	-1	validated	missense	c.1589	p.R530T	0.97	NULL	superfamily_ARM repeat	-	no_errors
MORC1	27136	broad.mit.edu	36	3	110305385	110305385	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	110305385	110305385	C	A	SNP	MORC1	NM_014429	human	genbank	54_36p	-1	reviewed	splice_site	c.223+1	e4+1	1	-	-	-	no_errors
PHLDB2	90102	broad.mit.edu	36	3	113086296	113086296	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	113086296	113086296	G	A	SNP	PHLDB2	NM_145753	human	genbank	54_36p	1	validated	missense	c.682	p.E228K	0.37	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
PHLDB2	90102	broad.mit.edu	36	3	113155478	113155478	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	113155478	113155478	C	A	SNP	PHLDB2	NM_145753	human	genbank	54_36p	1	validated	silent	c.2655	p.P885	0.95	NULL	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
PHLDB2	90102	broad.mit.edu	36	3	113176058	113176058	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	113176058	113176058	T	C	SNP	PHLDB2	NM_145753	human	genbank	54_36p	1	validated	silent	c.3591	p.V1197	0.96	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
TMPRSS7	344805	broad.mit.edu	36	3	113278420	113278420	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	113278420	113278420	G	C	SNP	TMPRSS7	NM_001042575	human	genbank	54_36p	1	validated	missense	c.1150	p.D384H	1	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC9A10	285335	broad.mit.edu	36	3	113370775	113370775	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	113370775	113370775	C	T	SNP	SLC9A10	NM_183061	human	genbank	54_36p	-1	validated	missense	c.3010	p.A1004T	0.52	superfamily_cAMP-binding domain-like	"HMMPfam_Na_H_Exchanger,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_WD_REPEATS_1,superfamily_cAMP-binding domain-like,HMMPfam_cNMP_binding"	-	no_errors
SLC9A10	285335	broad.mit.edu	36	3	113480376	113480376	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	113480376	113480376	C	T	SNP	SLC9A10	NM_183061	human	genbank	54_36p	-1	validated	missense	c.208	p.A70T	0.88	HMMPfam_Na_H_Exchanger	"HMMPfam_cNMP_binding,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,superfamily_cAMP-binding domain-like,PatternScan_WD_REPEATS_1,superfamily_Voltage-gated potassium channels"	-	no_errors
CCDC80	151887	broad.mit.edu	36	3	113840321	113840321	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	113840321	113840321	T	A	SNP	CCDC80	NM_199511	human	genbank	54_36p	-1	validated	missense	c.1122	p.R374S	1	NULL	NULL	-	no_errors
CD200R1	131450	broad.mit.edu	36	3	114131015	114131015	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	114131015	114131015	T	C	SNP	CD200R1	NM_138806	human	genbank	54_36p	-1	reviewed	missense	c.232	p.T78A	0	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_C2-set_2"	-	no_errors
BOC	91653	broad.mit.edu	36	3	114452142	114452142	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	114452142	114452142	G	A	SNP	BOC	NM_033254	human	genbank	54_36p	1	validated	missense	c.148	p.G50R	1	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_N6_MTASE,PatternScan_CYTOCHROME_P450"	-	no_errors
SPICE1	152185	broad.mit.edu	36	3	114670383	114670383	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	114670383	114670383	C	T	SNP	CCDC52	NM_144718	human	genbank	54_36p	-1	validated	missense	c.805	p.E269K	1	NULL	NULL	-	no_errors
SIDT1	54847	broad.mit.edu	36	3	114809700	114809700	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	114809700	114809700	G	A	SNP	SIDT1	NM_017699	human	genbank	54_36p	1	validated	silent	c.1548	p.L516	1	NULL	NULL	-	no_errors
KIAA2018	205717	broad.mit.edu	36	3	114859445	114859445	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	114859445	114859445	C	T	SNP	KIAA2018	NM_001009899	human	genbank	54_36p	-1	validated	silent	c.3774	p.A1258	0	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
KIAA2018	205717	broad.mit.edu	36	3	114860013	114860013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	114860013	114860013	G	A	SNP	KIAA2018	NM_001009899	human	genbank	54_36p	-1	validated	missense	c.3206	p.P1069L	0.97	NULL	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	-	no_errors
KIAA2018	205717	broad.mit.edu	36	3	114861540	114861540	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	114861540	114861540	G	T	SNP	KIAA2018	NM_001009899	human	genbank	54_36p	-1	validated	missense	c.1679	p.T560N	0.98	NULL	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	-	no_errors
KIAA2018	205717	broad.mit.edu	36	3	114862666	114862666	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	114862666	114862666	G	C	SNP	KIAA2018	NM_001009899	human	genbank	54_36p	-1	validated	missense	c.553	p.P185A	1	NULL	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	-	no_errors
ATP6V1A	523	broad.mit.edu	36	3	114980320	114980320	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	114980320	114980320	C	G	SNP	ATP6V1A	NM_001690	human	genbank	54_36p	1	reviewed	silent	c.30	p.L10	0.87	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ATP6V1A	523	broad.mit.edu	36	3	114999971	114999971	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	114999971	114999971	G	A	SNP	ATP6V1A	NM_001690	human	genbank	54_36p	1	reviewed	silent	c.1482	p.Q494	1	"HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase"	###############################################################################################################################################################################################################################################################	-	no_errors
GRAMD1C	54762	broad.mit.edu	36	3	115105755	115105755	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	115105755	115105755	A	G	SNP	GRAMD1C	NM_017577	human	genbank	54_36p	1	validated	silent	c.735	p.E245	0.25	NULL	"HMMPfam_GRAM,HMMSmart_SM00568"	-	no_errors
GRAMD1C	54762	broad.mit.edu	36	3	115117258	115117258	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	115117258	115117258	C	G	SNP	GRAMD1C	NM_017577	human	genbank	54_36p	1	validated	missense	c.973	p.L325V	1	NULL	"HMMPfam_GRAM,HMMSmart_SM00568"	-	no_errors
ZNF80	7634	broad.mit.edu	36	3	115438209	115438209	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	115438209	115438209	A	C	SNP	ZNF80	NM_007136	human	genbank	54_36p	-1	validated	missense	c.403	p.C135G	0.04	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF80	7634	broad.mit.edu	36	3	115438336	115438336	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	115438336	115438336	G	A	SNP	ZNF80	NM_007136	human	genbank	54_36p	-1	validated	silent	c.276	p.F92	0	"HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZBTB20	26137	broad.mit.edu	36	3	115552582	115552582	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	115552582	115552582	C	G	SNP	ZBTB20	NM_015642	human	genbank	54_36p	-1	provisional	missense	c.814	p.V272L	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZBTB20	26137	broad.mit.edu	36	3	115552819	115552819	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	115552819	115552819	C	T	SNP	ZBTB20	NM_015642	human	genbank	54_36p	-1	provisional	missense	c.577	p.V193M	0.79	NULL	"HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
C3orf30	152405	broad.mit.edu	36	3	120347988	120347988	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	120347988	120347988	G	T	SNP	C3orf30	NM_152539	human	genbank	54_36p	1	predicted	missense	c.262	p.G88C	0.02	NULL	NULL	-	no_errors
ARHGAP31	57514	broad.mit.edu	36	3	120595050	120595050	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	120595050	120595050	C	T	SNP	CDGAP	NM_020754	human	genbank	54_36p	1	reviewed	silent	c.928	p.L310	1	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
CD80	941	broad.mit.edu	36	3	120738700	120738700	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	120738700	120738700	A	T	SNP	CD80	NM_005191	human	genbank	54_36p	-1	validated	missense	c.674	p.V225E	0.09	"superfamily_Immunoglobulin,HMMPfam_C2-set_2"	"HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_V-set,HMMPfam_C2-set_2"	-	no_errors
C3orf15	89876	broad.mit.edu	36	3	120917218	120917218	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	120917218	120917218	C	T	SNP	C3orf15	NM_033364	human	genbank	54_36p	1	validated	missense	c.620	p.A207V	1	NULL	NULL	-	no_errors
C3orf15	89876	broad.mit.edu	36	3	120948797	120948797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	120948797	120948797	G	A	SNP	C3orf15	NM_033364	human	genbank	54_36p	1	validated	missense	c.2048	p.S683N	0.15	NULL	NULL	-	no_errors
GSK3B	2932	broad.mit.edu	36	3	121148808	121148808	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	121148808	121148808	C	G	SNP	GSK3B	NM_002093	human	genbank	54_36p	-1	provisional	missense	c.363	p.E121D	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
GPR156	165829	broad.mit.edu	36	3	121375008	121375008	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	121375008	121375008	C	T	SNP	GPR156	NM_153002	human	genbank	54_36p	-1	provisional	splice_site	c.934-1	e8-1	1	-	-	-	no_errors
GTF2E1	2960	broad.mit.edu	36	3	121972336	121972336	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	121972336	121972336	C	T	SNP	GTF2E1	NM_005513	human	genbank	54_36p	1	validated	missense	c.520	p.R174C	1	"HMMPfam_TFIIE_alpha,HMMSmart_TFIIE"	"HMMPfam_TFIIE_alpha,HMMSmart_TFIIE"	-	no_errors
STXBP5L	9515	broad.mit.edu	36	3	122246975	122246975	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122246975	122246975	G	T	SNP	STXBP5L	NM_014980	human	genbank	54_36p	1	validated	missense	c.373	p.A125S	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMPfam_LLGL"	-	no_errors
STXBP5L	9515	broad.mit.edu	36	3	122247071	122247071	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122247071	122247071	C	T	SNP	STXBP5L	NM_014980	human	genbank	54_36p	1	validated	nonsense	c.469	p.R157*	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
STXBP5L	9515	broad.mit.edu	36	3	122440601	122440601	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122440601	122440601	T	G	SNP	STXBP5L	NM_014980	human	genbank	54_36p	1	validated	missense	c.1278	p.I426M	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
STXBP5L	9515	broad.mit.edu	36	3	122458805	122458805	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122458805	122458805	T	A	SNP	STXBP5L	NM_014980	human	genbank	54_36p	1	validated	missense	c.1767	p.S589R	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
ARGFX	503582	broad.mit.edu	36	3	122787591	122787591	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122787591	122787591	G	T	SNP	ARGFX	NM_001012659	human	genbank	54_36p	1	validated	missense	c.402	p.K134N	0.28	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
FBXO40	51725	broad.mit.edu	36	3	122828349	122828349	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122828349	122828349	C	A	SNP	FBXO40	NM_016298	human	genbank	54_36p	1	validated	missense	c.2032	p.P678T	1	NULL	"superfamily_TRAF domain-like,superfamily_F-box domain,HMMPfam_F-box"	-	no_errors
GOLGB1	2804	broad.mit.edu	36	3	122893051	122893051	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122893051	122893051	G	A	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.7835	p.S2612F	0.69	HMMSmart_SM00340	"superfamily_Spectrin repeat,superfamily_Prefoldin,HMMSmart_SM00340"	-	no_errors
GOLGB1	2804	broad.mit.edu	36	3	122893196	122893196	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122893196	122893196	C	A	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	nonsense	c.7690	p.E2564*	0.71	NULL	"HMMSmart_SM00340,superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
GOLGB1	2804	broad.mit.edu	36	3	122898824	122898824	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	122898824	122898824	T	G	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.3221	p.Q1074P	0	NULL	"HMMSmart_SM00340,superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
GOLGB1	2804	broad.mit.edu	36	3	122899551	122899551	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	122899551	122899551	G	C	SNP	GOLGB1	NM_004487	human	genbank	54_36p	-1	validated	missense	c.2494	p.L832V	0.01	NULL	"HMMSmart_SM00340,superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
CD86	942	broad.mit.edu	36	3	123305171	123305171	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	123305171	123305171	T	G	SNP	CD86	NM_175862	human	genbank	54_36p	1	reviewed	missense	c.187	p.L63V	0	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406"	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406"	-	no_errors
CD86	942	broad.mit.edu	36	3	123307737	123307737	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	123307737	123307737	A	C	SNP	CD86	NM_175862	human	genbank	54_36p	1	reviewed	missense	c.403	p.N135H	1	superfamily_Immunoglobulin	"HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
CASR	846	broad.mit.edu	36	3	123485524	123485524	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	123485524	123485524	G	A	SNP	CASR	NM_000388	human	genbank	54_36p	1	reviewed	missense	c.2033	p.R678H	1	HMMPfam_7tm_3	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
PARP15	165631	broad.mit.edu	36	3	123836714	123836714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	123836714	123836714	G	A	SNP	PARP15	NM_152615	human	genbank	54_36p	1	validated	missense	c.1028	p.S343N	0.19	"superfamily_SSF56399,HMMPfam_PARP"	"superfamily_SSF52949,HMMPfam_Macro,superfamily_SSF56399,HMMPfam_PARP"	-	no_errors
PARP14	54625	broad.mit.edu	36	3	123905422	123905422	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	123905422	123905422	A	T	SNP	PARP14	NM_017554	human	genbank	54_36p	1	validated	silent	c.3225	p.T1075	0	"superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro"	"superfamily_Macro domain-like,HMMSmart_SM00506,HMMPfam_Macro,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
HSPBAP1	79663	broad.mit.edu	36	3	123970328	123970328	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	123970328	123970328	T	A	SNP	HSPBAP1	NM_024610	human	genbank	54_36p	-1	provisional	silent	c.342	p.P114	0.97	superfamily_Clavaminate synthase-like	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
SEC22A	26984	broad.mit.edu	36	3	124426687	124426687	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	124426687	124426687	C	G	SNP	SEC22A	NM_012430	human	genbank	54_36p	1	reviewed	missense	c.394	p.L132V	1	NULL	superfamily_SNARE-like	-	no_errors
ADCY5	111	broad.mit.edu	36	3	124649298	124649298	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	124649298	124649298	G	A	SNP	ADCY5	NM_183357	human	genbank	54_36p	-1	validated	missense	c.785	p.A262V	0.68	NULL	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
MYLK	4638	broad.mit.edu	36	3	124910306	124910306	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	124910306	124910306	G	A	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	missense	c.2069	p.T690M	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	###############################################################################################################################################################################################################################################################	-	no_errors
MYLK	4638	broad.mit.edu	36	3	124934450	124934450	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	124934450	124934450	C	T	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	nonsense	c.1499	p.W500*	0.98	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
MYLK	4638	broad.mit.edu	36	3	124954057	124954057	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	124954057	124954057	G	C	SNP	MYLK	NM_053025	human	genbank	54_36p	-1	reviewed	missense	c.184	p.P62A	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
ROPN1	54763	broad.mit.edu	36	3	125178457	125178457	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	125178457	125178457	C	A	SNP	ROPN1	NM_017578	human	genbank	54_36p	-1	provisional	missense	c.178	p.A60S	0.01	NULL	"superfamily_Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit,HMMPfam_RIIa"	-	no_errors
KALRN	8997	broad.mit.edu	36	3	125615117	125615117	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	125615117	125615117	G	C	SNP	KALRN	NM_001024660	human	genbank	54_36p	1	reviewed	silent	c.2451	p.R817	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
KALRN	8997	broad.mit.edu	36	3	125648301	125648301	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	125648301	125648301	C	A	SNP	KALRN	NM_001024660	human	genbank	54_36p	1	reviewed	missense	c.3425	p.A1142E	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
KALRN	8997	broad.mit.edu	36	3	125918907	125918907	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	125918907	125918907	A	T	SNP	KALRN	NM_001024660	human	genbank	54_36p	1	reviewed	silent	c.8400	p.A2800	0.64	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
UMPS	7372	broad.mit.edu	36	3	125939494	125939494	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	125939494	125939494	C	G	SNP	UMPS	NM_000373	human	genbank	54_36p	1	validated	missense	c.700	p.P234A	0.98	superfamily_Ribulose-phoshate binding barrel	"superfamily_PRTase-like,HMMPfam_Pribosyltran,superfamily_Ribulose-phoshate binding barrel,HMMPfam_OMPdecase,PatternScan_OMPDECASE"	-	no_errors
SLC12A8	84561	broad.mit.edu	36	3	126391980	126391980	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	126391980	126391980	C	A	SNP	SLC12A8	NM_024628	human	genbank	54_36p	-1	validated	missense	c.127	p.D43Y	1	NULL	HMMPfam_AA_permease	-	no_errors
OSBPL11	114885	broad.mit.edu	36	3	126754155	126754155	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	126754155	126754155	A	C	SNP	OSBPL11	NM_022776	human	genbank	54_36p	-1	reviewed	missense	c.1214	p.F405C	1	HMMPfam_Oxysterol_BP	"superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
OSBPL11	114885	broad.mit.edu	36	3	126781483	126781483	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	126781483	126781483	C	A	SNP	OSBPL11	NM_022776	human	genbank	54_36p	-1	reviewed	missense	c.325	p.A109S	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_SM00233,PatternScan_OSBP,superfamily_PH domain-like"	-	no_errors
ALDH1L1	10840	broad.mit.edu	36	3	127325902	127325902	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	127325902	127325902	C	T	SNP	ALDH1L1	NM_012190	human	genbank	54_36p	-1	reviewed	missense	c.1883	p.G628E	1	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh"	###############################################################################################################################################################################################################################################################	-	no_errors
ALDH1L1	10840	broad.mit.edu	36	3	127355060	127355060	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	127355060	127355060	C	G	SNP	ALDH1L1	NM_012190	human	genbank	54_36p	-1	reviewed	missense	c.775	p.D259H	0.96	"HMMPfam_Formyl_trans_C,superfamily_FMT_C_like"	###############################################################################################################################################################################################################################################################	-	no_errors
KLF15	28999	broad.mit.edu	36	3	127553477	127553477	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	127553477	127553477	C	A	SNP	KLF15	NM_014079	human	genbank	54_36p	-1	validated	missense	c.979	p.G327C	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CCDC37	348807	broad.mit.edu	36	3	127637157	127637157	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	127637157	127637157	C	T	SNP	CCDC37	NM_182628	human	genbank	54_36p	1	validated	missense	c.1694	p.A565V	0.87	NULL	NULL	-	no_errors
UROC1	131669	broad.mit.edu	36	3	127702316	127702316	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	127702316	127702316	C	T	SNP	UROC1	NM_144639	human	genbank	54_36p	-1	provisional	missense	c.1057	p.G353S	1	"superfamily_Urocanase,HMMPfam_Urocanase"	"superfamily_Urocanase,HMMPfam_Urocanase,PatternScan_UROCANASE"	-	no_errors
C3orf22	152065	broad.mit.edu	36	3	127751454	127751454	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	127751454	127751454	C	G	SNP	C3orf22	NM_152533	human	genbank	54_36p	-1	predicted	missense	c.373	p.A125P	0	NULL	NULL	-	no_errors
C3orf22	152065	broad.mit.edu	36	3	127753558	127753558	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	127753558	127753558	C	A	SNP	C3orf22	NM_152533	human	genbank	54_36p	-1	predicted	missense	c.187	p.V63L	0.13	NULL	NULL	-	no_errors
PLXNA1	5361	broad.mit.edu	36	3	128218095	128218095	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	128218095	128218095	C	T	SNP	PLXNA1	NM_032242	human	genbank	54_36p	1	validated	silent	c.2991	p.S997	0.42	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	-	no_errors
MCM2	4171	broad.mit.edu	36	3	128807766	128807766	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	128807766	128807766	C	A	SNP	MCM2	NM_004526	human	genbank	54_36p	1	reviewed	silent	c.789	p.A263	1	superfamily_Nucleic_acid_OB	"superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,PatternScan_MCM_1"	-	no_errors
PODXL2	50512	broad.mit.edu	36	3	128862576	128862576	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	128862576	128862576	G	A	SNP	PODXL2	NM_015720	human	genbank	54_36p	1	validated	missense	c.1015	p.G339R	0.09	NULL	HMMPfam_CD34_antigen	-	no_errors
KBTBD12	166348	broad.mit.edu	36	3	129125457	129125457	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	129125457	129125457	G	C	SNP	KLHDC6	NM_207335	human	genbank	54_36p	1	validated	missense	c.863	p.R288T	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
SEC61A1	29927	broad.mit.edu	36	3	129271148	129271148	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	129271148	129271148	G	T	SNP	SEC61A1	NM_013336	human	genbank	54_36p	1	reviewed	missense	c.1384	p.V462F	1	superfamily_Preprotein translocase SecY subunit	"superfamily_Preprotein translocase SecY subunit,HMMPfam_Plug_translocon,PatternScan_SECY_1,HMMPfam_SecY,PatternScan_SECY_2"	-	no_errors
EEFSEC	60678	broad.mit.edu	36	3	129542882	129542882	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	129542882	129542882	G	T	SNP	EEFSEC	NM_021937	human	genbank	54_36p	1	validated	silent	c.903	p.G301	0.91	"superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2"	-	no_errors
RPN1	6184	broad.mit.edu	36	3	129827101	129827101	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	129827101	129827101	A	G	SNP	RPN1	NM_002950	human	genbank	54_36p	-1	reviewed	missense	c.1361	p.I454T	1	HMMPfam_Ribophorin_I	HMMPfam_Ribophorin_I	-	no_errors
ACAD9	28976	broad.mit.edu	36	3	130100986	130100986	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	130100986	130100986	G	T	SNP	ACAD9	NM_014049	human	genbank	54_36p	1	validated	missense	c.800	p.G267V	1	superfamily_AcylCoA_dehyd_NM	"HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2"	-	no_errors
ACAD9	28976	broad.mit.edu	36	3	130111556	130111556	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	130111556	130111556	C	G	SNP	ACAD9	NM_014049	human	genbank	54_36p	1	validated	silent	c.1566	p.T522	0.99	NULL	"PatternScan_ACYL_COA_DH_1,PatternScan_ACYL_COA_DH_2,HMMPfam_Acyl-CoA_dh_1,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoADH_C_like,superfamily_AcylCoA_dehyd_NM"	-	no_errors
COPG	22820	broad.mit.edu	36	3	130462264	130462264	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	130462264	130462264	C	T	SNP	COPG	NM_016128	human	genbank	54_36p	1	validated	missense	c.1052	p.T351M	1	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Gamma-COP,superfamily_Subdomain of clathrin and coatomer appendage domain"	-	no_errors
COPG	22820	broad.mit.edu	36	3	130469502	130469502	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	130469502	130469502	A	G	SNP	COPG	NM_016128	human	genbank	54_36p	1	validated	missense	c.1577	p.D526G	1	"HMMPfam_Adaptin_N,superfamily_ARM repeat"	"HMMPfam_Adaptin_N,superfamily_Subdomain of clathrin and coatomer appendage domain,superfamily_Clathrin adaptor appendage domain,HMMPfam_Gamma-COP,superfamily_ARM repeat"	-	no_errors
C3orf37	56941	broad.mit.edu	36	3	130506330	130506330	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	130506330	130506330	C	G	SNP	C3orf37	NM_001006109	human	genbank	54_36p	1	validated	missense	c.1037	p.P346R	0.66	NULL	HMMPfam_DUF159	-	no_errors
H1FX	8971	broad.mit.edu	36	3	130517372	130517372	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	130517372	130517372	T	G	SNP	H1FX	NM_006026	human	genbank	54_36p	-1	reviewed	missense	c.64	p.T22P	1	NULL	"superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone"	-	no_errors
C3orf25	90288	broad.mit.edu	36	3	130603325	130603325	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	130603325	130603325	G	A	SNP	C3orf25	NM_207307	human	genbank	54_36p	-1	predicted	missense	c.1520	p.P507L	0.98	NULL	"PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
C3orf25	90288	broad.mit.edu	36	3	130612864	130612864	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	130612864	130612864	C	T	SNP	C3orf25	NM_207307	human	genbank	54_36p	-1	predicted	missense	c.862	p.D288N	0	NULL	"PatternScan_EF_HAND_1,superfamily_SSF47473"	-	no_errors
MBD4	8930	broad.mit.edu	36	3	130638158	130638158	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	130638158	130638158	T	C	SNP	MBD4	NM_003925	human	genbank	54_36p	-1	reviewed	missense	c.1019	p.K340R	0.07	NULL	"superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-glycosylase,HMMPfam_HhH-GPD"	-	no_errors
IFT122	55764	broad.mit.edu	36	3	130678335	130678335	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	130678335	130678335	G	T	SNP	IFT122	NM_052985	human	genbank	54_36p	1	reviewed	splice_site	c.1300+1	e12+1	1	-	-	-	no_errors
IFT122	55764	broad.mit.edu	36	3	130701528	130701528	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	130701528	130701528	G	T	SNP	IFT122	NM_052985	human	genbank	54_36p	1	reviewed	missense	c.2455	p.V819L	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
COL6A5	256076	broad.mit.edu	36	3	131641985	131641985	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	131641985	131641985	A	G	SNP	COL29A1	NM_153264	human	genbank	54_36p	1	validated	missense	c.230	p.Q77R	0	"HMMSmart_VWA,superfamily_SSF53300,HMMPfam_VWA"	"HMMSmart_VWA,superfamily_SSF53300,HMMPfam_VWA"	-	no_errors
COL6A5	256076	broad.mit.edu	36	3	131642328	131642328	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	131642328	131642328	G	A	SNP	COL29A1	NM_153264	human	genbank	54_36p	1	validated	silent	c.573	p.K191	0.81	superfamily_SSF53300	"HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300"	-	no_errors
COL6A6	131873	broad.mit.edu	36	3	131764789	131764789	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	131764789	131764789	C	A	SNP	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	missense	c.252	p.F84L	0.12	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA"	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen"	-	no_errors
COL6A6	131873	broad.mit.edu	36	3	131764946	131764946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	131764946	131764946	G	C	SNP	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	missense	c.409	p.V137L	1	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like"	-	no_errors
COL6A6	131873	broad.mit.edu	36	3	131767102	131767120	+	Frame_Shift_Del	DEL	ACACACAGTCTCTGTCTTT	-	ACACACAGTCTCTGTCTTT	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	ACACACAGTCTCTGTCTTT	ACACACAGTCTCTGTCTTT	-	-	ACACACAGTCTCTGTCTTT	ACACACAGTCTCTGTCTTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	131767102	131767120	ACACACAGTCTCTGTCTTT	-	DEL	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	frame_shift_del	c.1236_1254	p.H413fs	0.001:0.016:0.019:0.004:0.003:0.002:0.000:0.032:0.074:0.061:0.050:0.024:0.002:0.006:0.008:0.001:0.000:0.000:0.000	NULL	"HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen"	"(deletion:cds_exon[131766528,131767148])"	no_errors
COL6A6	131873	broad.mit.edu	36	3	131772745	131772745	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	131772745	131772745	C	T	SNP	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	missense	c.2795	p.T932M	0.02	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like"	-	no_errors
COL6A6	131873	broad.mit.edu	36	3	131776047	131776047	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	131776047	131776047	G	C	SNP	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	missense	c.3535	p.A1179P	0	superfamily_vWA-like	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like"	-	no_errors
COL6A6	131873	broad.mit.edu	36	3	131783252	131783252	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	131783252	131783252	T	A	SNP	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	silent	c.3705	p.T1235	1	"HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like"	-	no_errors
COL6A6	131873	broad.mit.edu	36	3	131850964	131850964	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	131850964	131850964	C	T	SNP	COL6A6	NM_001102608	human	genbank	54_36p	1	provisional	silent	c.5601	p.A1867	0.99	"HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like"	-	no_errors
PIK3R4	30849	broad.mit.edu	36	3	131925103	131925103	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	131925103	131925103	C	T	SNP	PIK3R4	NM_014602	human	genbank	54_36p	-1	validated	missense	c.1826	p.G609D	1	superfamily_ARM-type_fold	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM-type_fold,HMMPfam_HEAT,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ACAD11	84129	broad.mit.edu	36	3	133846346	133846346	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	133846346	133846346	A	G	SNP	ACAD11	ENST00000393156	human	ensembl	54_36p	-1	known	missense	c.4069	p.S1357P	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1"	-	no_errors
ACAD11	84129	broad.mit.edu	36	3	133861225	133861225	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	133861225	133861225	C	T	SNP	ACAD11	NM_032169	human	genbank	54_36p	-1	validated	missense	c.61	p.D21N	0.98	superfamily_Protein kinase-like (PK-like)	###############################################################################################################################################################################################################################################################	-	no_errors
ACAD11	84129	broad.mit.edu	36	3	133861273	133861273	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	133861273	133861273	C	A	SNP	ACAD11	NM_032169	human	genbank	54_36p	-1	validated	missense	c.13	p.A5S	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NPHP3	27031	broad.mit.edu	36	3	133903036	133903036	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	133903036	133903036	G	C	SNP	NPHP3	NM_153240	human	genbank	54_36p	-1	reviewed	missense	c.1556	p.A519G	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1"	-	no_errors
NPHP3	27031	broad.mit.edu	36	3	133916620	133916620	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	133916620	133916620	T	A	SNP	NPHP3	NM_153240	human	genbank	54_36p	-1	reviewed	missense	c.956	p.K319M	1	NULL	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TF	7018	broad.mit.edu	36	3	134960749	134960749	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	134960749	134960749	G	T	SNP	TF	NM_001063	human	genbank	54_36p	1	reviewed	missense	c.1089	p.W363C	1	"superfamily_Periplasmic binding protein-like II,HMMPfam_Transferrin,HMMSmart_SM00094"	"superfamily_Periplasmic binding protein-like II,HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_1,PatternScan_TRANSFERRIN_2,PatternScan_TRANSFERRIN_3"	-	no_errors
SLCO2A1	6578	broad.mit.edu	36	3	135137337	135137337	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	135137337	135137337	G	C	SNP	SLCO2A1	NM_005630	human	genbank	54_36p	-1	validated	silent	c.1785	p.A595	0.53	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
RYK	6259	broad.mit.edu	36	3	135390446	135390446	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	135390446	135390446	G	A	SNP	RYK	NM_001005861	human	genbank	54_36p	-1	reviewed	missense	c.1034	p.A345V	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
AMOTL2	51421	broad.mit.edu	36	3	135569177	135569177	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	135569177	135569177	C	G	SNP	AMOTL2	NM_016201	human	genbank	54_36p	-1	reviewed	missense	c.893	p.S298T	0	NULL	NULL	-	no_errors
AMOTL2	51421	broad.mit.edu	36	3	135572745	135572745	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	135572745	135572745	G	T	SNP	AMOTL2	NM_016201	human	genbank	54_36p	-1	reviewed	missense	c.221	p.P74H	1	NULL	NULL	-	no_errors
KY	339855	broad.mit.edu	36	3	135822366	135822366	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	135822366	135822366	G	A	SNP	KY	NM_178554	human	genbank	54_36p	-1	validated	silent	c.507	p.D169	0.86	"superfamily_Cysteine proteinases,HMMPfam_Transglut_core"	"superfamily_Cysteine proteinases,HMMPfam_Transglut_core,HMMSmart_SM00460"	-	no_errors
EPHB1	2047	broad.mit.edu	36	3	135997165	135997165	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	135997165	135997165	T	A	SNP	EPHB1	NM_004441	human	genbank	54_36p	1	reviewed	missense	c.2	p.M1K	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB1	2047	broad.mit.edu	36	3	136153129	136153129	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	136153129	136153129	C	A	SNP	EPHB1	NM_004441	human	genbank	54_36p	1	reviewed	missense	c.350	p.T117N	1	"HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB1	2047	broad.mit.edu	36	3	136153305	136153305	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	136153305	136153305	G	A	SNP	EPHB1	NM_004441	human	genbank	54_36p	1	reviewed	missense	c.526	p.A176T	1	"HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB1	2047	broad.mit.edu	36	3	136334264	136334264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	136334264	136334264	G	A	SNP	EPHB1	NM_004441	human	genbank	54_36p	1	reviewed	missense	c.980	p.R327H	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB1	2047	broad.mit.edu	36	3	136403158	136403158	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	136403158	136403158	C	T	SNP	EPHB1	NM_004441	human	genbank	54_36p	1	reviewed	silent	c.2283	p.S761	0.18	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
PPP2R3A	5523	broad.mit.edu	36	3	137204717	137204717	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	137204717	137204717	C	A	SNP	PPP2R3A	NM_002718	human	genbank	54_36p	1	reviewed	missense	c.1687	p.P563T	0.01	NULL	"superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
STAG1	10274	broad.mit.edu	36	3	137805986	137805986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	137805986	137805986	C	T	SNP	STAG1	NM_005862	human	genbank	54_36p	-1	reviewed	missense	c.152	p.R51Q	1	NULL	"superfamily_ARM-type_fold,HMMPfam_STAG"	-	no_errors
TMEM22	80723	broad.mit.edu	36	3	138056192	138056206	+	In_Frame_Del	DEL	CTTTCTTTGGAACCA	-	CTTTCTTTGGAACCA	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	CTTTCTTTGGAACCA	CTTTCTTTGGAACCA	-	-	CTTTCTTTGGAACCA	CTTTCTTTGGAACCA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	138056192	138056206	CTTTCTTTGGAACCA	-	DEL	TMEM22	NM_001097599	human	genbank	54_36p	1	validated	in_frame_del	c.200_214	p.AFFGTM67in_frame_delV	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:0.990:0.994	NULL	"HMMPfam_DUF6,superfamily_SSF103481"	"(deletion:cds_exon[138055993,138057231])"	no_errors
CLDN18	51208	broad.mit.edu	36	3	139200538	139200538	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	139200538	139200538	C	A	SNP	CLDN18	NM_001002026	human	genbank	54_36p	1	validated	nonsense	c.138	p.Y46*	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
PRR23B	389151	broad.mit.edu	36	3	140221999	140221999	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	140221999	140221999	C	G	SNP	LOC389151	NM_001013650	human	genbank	54_36p	-1	validated	silent	c.195	p.A65	0.01	HMMPfam_DUF2476	HMMPfam_DUF2476	-	no_errors
COPB2	9276	broad.mit.edu	36	3	140560638	140560639	+	Frame_Shift_Del	DEL	TG	-	TG	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	TG	TG	-	-	TG	TG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	140560638	140560639	TG	-	DEL	COPB2	NM_004766	human	genbank	54_36p	-1	validated	frame_shift_del	c.2376_2375	p.T792fs	0.999:1.000	NULL	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_Amine_DH_B_like,HMMPfam_Coatomer_WDAD"	"(deletion:cds_exon[140560530,140560710])"	no_errors
ZBTB38	253461	broad.mit.edu	36	3	142646681	142646681	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	142646681	142646681	A	G	SNP	ZBTB38	NM_001080412	human	genbank	54_36p	1	validated	missense	c.2761	p.N921D	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
GRK7	131890	broad.mit.edu	36	3	143009181	143009181	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	143009181	143009181	G	C	SNP	GRK7	NM_139209	human	genbank	54_36p	1	reviewed	missense	c.1055	p.G352A	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X"	-	no_errors
XRN1	54464	broad.mit.edu	36	3	143534594	143534594	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	143534594	143534594	C	T	SNP	XRN1	NM_019001	human	genbank	54_36p	-1	validated	missense	c.3967	p.A1323T	1	NULL	"HMMPfam_XRN_N,superfamily_dsRNA-binding domain-like"	-	no_errors
PCOLCE2	26577	broad.mit.edu	36	3	144025146	144025146	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	144025146	144025146	A	G	SNP	PCOLCE2	NM_013363	human	genbank	54_36p	-1	provisional	silent	c.867	p.G289	1	NULL	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,PatternScan_ABC_TRANSPORTER_1,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	-	no_errors
CHST2	9435	broad.mit.edu	36	3	144322501	144322501	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	144322501	144322501	C	G	SNP	CHST2	NM_004267	human	genbank	54_36p	1	validated	missense	c.153	p.F51L	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
CHST2	9435	broad.mit.edu	36	3	144323464	144323464	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	144323464	144323464	G	A	SNP	CHST2	NM_004267	human	genbank	54_36p	1	validated	silent	c.1116	p.A372	0.25	"HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CHST2	9435	broad.mit.edu	36	3	144323520	144323520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	144323520	144323520	C	T	SNP	CHST2	NM_004267	human	genbank	54_36p	1	validated	missense	c.1172	p.A391V	1	"HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SLC9A9	285195	broad.mit.edu	36	3	144468407	144468407	+	Missense_Mutation	SNP	T	T	G	rs2289491	"by-cluster,by-frequency,by-submitter,by-hapmap"	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	144468407	144468407	T	G	SNP	SLC9A9	NM_173653	human	genbank	54_36p	-1	validated	missense	c.1765	p.I589L	0.39	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
C3orf58	205428	broad.mit.edu	36	3	145174022	145174022	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	145174022	145174022	A	G	SNP	C3orf58	NM_173552	human	genbank	54_36p	1	validated	missense	c.158	p.N53S	1	NULL	NULL	-	no_errors
PLOD2	5352	broad.mit.edu	36	3	147324655	147324655	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	147324655	147324655	C	T	SNP	PLOD2	NM_182943	human	genbank	54_36p	-1	reviewed	missense	c.161	p.R54Q	1	NULL	"HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE"	-	no_errors
PLSCR1	5359	broad.mit.edu	36	3	147716578	147716578	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	147716578	147716578	C	G	SNP	PLSCR1	NM_021105	human	genbank	54_36p	-1	validated	missense	c.901	p.D301H	1	HMMPfam_Scramblase	HMMPfam_Scramblase	-	no_errors
TM4SF18	116441	broad.mit.edu	36	3	150525433	150525433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	150525433	150525433	C	T	SNP	TM4SF18	NM_138786	human	genbank	54_36p	-1	provisional	missense	c.334	p.A112T	0.84	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
TM4SF4	7104	broad.mit.edu	36	3	150699338	150699338	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	150699338	150699338	G	T	SNP	TM4SF4	NM_004617	human	genbank	54_36p	1	reviewed	missense	c.541	p.G181C	1	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
RNF13	11342	broad.mit.edu	36	3	151095968	151095968	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	151095968	151095968	G	C	SNP	RNF13	NM_007282	human	genbank	54_36p	1	reviewed	missense	c.340	p.A114P	1	"superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA"	"superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_EGF_2"	-	no_errors
PFN2	5217	broad.mit.edu	36	3	151168850	151168850	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	151168850	151168850	C	G	SNP	PFN2	NM_002628	human	genbank	54_36p	-1	reviewed	missense	c.310	p.G104R	1	"superfamily_Profilin (actin-binding protein),HMMSmart_SM00392,HMMPfam_Profilin"	"PatternScan_PROFILIN,superfamily_Profilin (actin-binding protein),HMMSmart_SM00392,HMMPfam_Profilin"	-	no_errors
TSC22D2	9819	broad.mit.edu	36	3	151610420	151610420	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	151610420	151610420	C	G	SNP	TSC22D2	NM_014779	human	genbank	54_36p	1	provisional	missense	c.593	p.S198C	1	NULL	"PatternScan_TSC22,HMMPfam_TSC22"	-	no_errors
EIF2A	83939	broad.mit.edu	36	3	151772489	151772489	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	151772489	151772489	G	T	SNP	EIF2A	NM_032025	human	genbank	54_36p	1	validated	missense	c.866	p.C289F	1	"superfamily_WD40 repeat-like,HMMPfam_eIF2A"	"superfamily_WD40 repeat-like,HMMPfam_eIF2A"	-	no_errors
FAM194A	131831	broad.mit.edu	36	3	151860491	151860491	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	151860491	151860491	T	A	SNP	C3orf44	NM_152394	human	genbank	54_36p	-1	validated	nonsense	c.1870	p.K624*	0.05	NULL	NULL	-	no_errors
MED12L	116931	broad.mit.edu	36	3	152393987	152393987	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	152393987	152393987	A	G	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	silent	c.1989	p.G663	1	NULL	HMMPfam_Med12	-	no_errors
P2RY12	64805	broad.mit.edu	36	3	152538631	152538631	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	152538631	152538631	C	A	SNP	P2RY12	NM_022788	human	genbank	54_36p	-1	reviewed	missense	c.693	p.R231S	0.68	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
MED12L	116931	broad.mit.edu	36	3	152588602	152588602	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	152588602	152588602	G	T	SNP	MED12L	NM_053002	human	genbank	54_36p	1	validated	missense	c.5298	p.K1766N	1	NULL	HMMPfam_Med12	-	no_errors
IGSF10	285313	broad.mit.edu	36	3	152644252	152644252	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	152644252	152644252	C	T	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	missense	c.5173	p.A1725T	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_I-set,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_ig"	-	no_errors
IGSF10	285313	broad.mit.edu	36	3	152646317	152646317	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	152646317	152646317	G	A	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	missense	c.4142	p.T1381I	0	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
IGSF10	285313	broad.mit.edu	36	3	152648106	152648106	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	152648106	152648106	G	C	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	missense	c.2353	p.Q785E	0	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
IGSF10	285313	broad.mit.edu	36	3	152649167	152649167	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	152649167	152649167	T	C	SNP	IGSF10	NM_178822	human	genbank	54_36p	-1	provisional	missense	c.1292	p.Q431R	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
SUCNR1	56670	broad.mit.edu	36	3	153081999	153081999	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	153081999	153081999	A	T	SNP	SUCNR1	NM_033050	human	genbank	54_36p	1	provisional	missense	c.978	p.E326D	0	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
P2RY1	5028	broad.mit.edu	36	3	154036300	154036300	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	154036300	154036300	G	A	SNP	P2RY1	NM_002563	human	genbank	54_36p	1	reviewed	silent	c.39	p.T13	0.7	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR149	344758	broad.mit.edu	36	3	155538753	155538753	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	155538753	155538753	C	T	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.1625	p.R542H	1	NULL	NULL	-	no_errors
GPR149	344758	broad.mit.edu	36	3	155629846	155629846	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	155629846	155629846	C	T	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.253	p.V85M	0.82	NULL	NULL	-	no_errors
GPR149	344758	broad.mit.edu	36	3	155629951	155629951	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	155629951	155629951	C	A	SNP	GPR149	NM_001038705	human	genbank	54_36p	-1	provisional	missense	c.148	p.G50C	1	NULL	NULL	-	no_errors
MME	4311	broad.mit.edu	36	3	156315588	156315588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	156315588	156315588	G	T	SNP	MME	NM_000902	human	genbank	54_36p	1	reviewed	missense	c.308	p.R103L	0.91	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
MME	4311	broad.mit.edu	36	3	156347676	156347676	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	156347676	156347676	A	G	SNP	MME	NM_000902	human	genbank	54_36p	1	reviewed	missense	c.1466	p.N489S	0.05	superfamily_Metalloproteases (zincins) catalytic domain	"HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
PLCH1	23007	broad.mit.edu	36	3	156694660	156694660	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	156694660	156694660	A	C	SNP	PLCH1	NM_014996	human	genbank	54_36p	-1	validated	missense	c.2056	p.C686G	1	"HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC33A1	9197	broad.mit.edu	36	3	157043032	157043032	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	157043032	157043032	G	A	SNP	SLC33A1	NM_004733	human	genbank	54_36p	-1	reviewed	silent	c.846	p.N282	0.99	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
GMPS	8833	broad.mit.edu	36	3	157116538	157116538	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	157116538	157116538	C	G	SNP	GMPS	NM_003875	human	genbank	54_36p	1	reviewed	missense	c.1075	p.P359A	1	superfamily_Adenine nucleotide alpha hydrolases-like	"superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase,superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_ExsB,HMMPfam_GMP_synt_C,superfamily_GMP synthetase C-terminal dimerisation domain"	-	no_errors
KCNAB1	7881	broad.mit.edu	36	3	157714893	157714893	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	157714893	157714893	G	A	SNP	KCNAB1	NM_172160	human	genbank	54_36p	1	reviewed	missense	c.705	p.M235I	1	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	-	no_errors
TIPARP	25976	broad.mit.edu	36	3	157904093	157904093	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	157904093	157904093	C	T	SNP	TIPARP	NM_015508	human	genbank	54_36p	1	provisional	silent	c.1434	p.Y478	1	"superfamily_SSF56399,HMMPfam_PARP"	"HMMPfam_zf-CCCH,superfamily_SSF56399,HMMPfam_PARP"	-	no_errors
LEKR1	389170	broad.mit.edu	36	3	158245839	158245839	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	158245839	158245839	A	G	SNP	LEKR1	NM_001004316	human	genbank	54_36p	1	provisional	missense	c.773	p.E258G	1	NULL	NULL	-	no_errors
GFM1	85476	broad.mit.edu	36	3	159859422	159859422	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	159859422	159859422	A	G	SNP	GFM1	NM_024996	human	genbank	54_36p	1	reviewed	silent	c.1101	p.Q367	1	"superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2"	"superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C"	-	no_errors
RARRES1	5918	broad.mit.edu	36	3	159911391	159911391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	159911391	159911391	C	T	SNP	RARRES1	NM_206963	human	genbank	54_36p	-1	reviewed	missense	c.365	p.R122H	0	HMMPfam_Latexin	HMMPfam_Latexin	-	no_errors
SCHIP1	29970	broad.mit.edu	36	3	161086767	161086767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	161086767	161086767	G	A	SNP	SCHIP1	NM_014575	human	genbank	54_36p	1	provisional	missense	c.956	p.S319N	1	HMMPfam_SCHIP-1	HMMPfam_SCHIP-1	-	no_errors
SMC4	10051	broad.mit.edu	36	3	161603287	161603287	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	161603287	161603287	G	A	SNP	SMC4	NM_001002800	human	genbank	54_36p	1	validated	missense	c.448	p.D150N	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_Smc hinge domain,HMMPfam_SMC_hinge"	-	no_errors
OTOL1	131149	broad.mit.edu	36	3	162703943	162703943	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	162703943	162703943	T	C	SNP	OTOL1	NM_001080440	human	genbank	54_36p	1	predicted	missense	c.953	p.V318A	0	HMMPfam_Collagen	"HMMPfam_Collagen,HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q"	-	no_errors
SI	6476	broad.mit.edu	36	3	166218074	166218074	+	Missense_Mutation	SNP	C	C	A	rs41273567	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	166218074	166218074	C	A	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.3715	p.V1239F	0.43	"HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SI	6476	broad.mit.edu	36	3	166218272	166218272	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	166218272	166218272	G	T	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.3604	p.P1202T	1	HMMPfam_Glyco_hydro_31	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SI	6476	broad.mit.edu	36	3	166221865	166221865	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	166221865	166221865	T	A	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.3100	p.I1034F	1	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SI	6476	broad.mit.edu	36	3	166224101	166224101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	166224101	166224101	G	T	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.3050	p.T1017N	0.65	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SI	6476	broad.mit.edu	36	3	166265802	166265802	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	166265802	166265802	G	A	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.748	p.R250C	1	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SI	6476	broad.mit.edu	36	3	166267825	166267825	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	166267825	166267825	G	A	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.632	p.T211I	0.08	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SI	6476	broad.mit.edu	36	3	166267839	166267839	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	166267839	166267839	T	A	SNP	SI	NM_001041	human	genbank	54_36p	-1	validated	missense	c.618	p.K206N	1	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL"	-	no_errors
SLITRK3	22865	broad.mit.edu	36	3	166388411	166388411	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	166388411	166388411	C	A	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	nonsense	c.2902	p.E968*	1	NULL	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMSmart_LRRNT,HMMPfam_LRR_1"	-	no_errors
SLITRK3	22865	broad.mit.edu	36	3	166388818	166388818	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	166388818	166388818	G	A	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	missense	c.2495	p.T832M	1	NULL	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
SLITRK3	22865	broad.mit.edu	36	3	166389115	166389115	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	166389115	166389115	G	T	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	missense	c.2198	p.A733D	1	NULL	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
BCHE	590	broad.mit.edu	36	3	167030584	167030584	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	167030584	167030584	C	A	SNP	BCHE	NM_000055	human	genbank	54_36p	-1	reviewed	missense	c.932	p.G311V	0	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,HMMPfam_AChE_tetra"	-	no_errors
BCHE	590	broad.mit.edu	36	3	167031189	167031189	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	167031189	167031189	C	G	SNP	BCHE	NM_000055	human	genbank	54_36p	-1	reviewed	missense	c.327	p.M109I	1	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,HMMPfam_AChE_tetra,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_SSF53474"	-	no_errors
WDR49	151790	broad.mit.edu	36	3	168737372	168737372	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	168737372	168737372	G	T	SNP	WDR49	NM_178824	human	genbank	54_36p	-1	provisional	missense	c.878	p.P293H	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
MECOM	2122	broad.mit.edu	36	3	170316930	170316930	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	170316930	170316930	T	A	SNP	EVI1	NM_001105077	human	genbank	54_36p	-1	validated	missense	c.1052	p.H351L	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
LRRC31	79782	broad.mit.edu	36	3	171061052	171061052	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	171061052	171061052	G	C	SNP	LRRC31	NM_024727	human	genbank	54_36p	-1	validated	missense	c.478	p.Q160E	0	"superfamily_RNI-like,HMMSmart_SM00368"	"HMMSmart_SM00368,superfamily_RNI-like"	-	no_errors
LRRC31	79782	broad.mit.edu	36	3	171061159	171061159	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	171061159	171061159	T	C	SNP	LRRC31	NM_024727	human	genbank	54_36p	-1	validated	missense	c.371	p.N124S	1	superfamily_RNI-like	"HMMSmart_SM00368,superfamily_RNI-like"	-	no_errors
SAMD7	344658	broad.mit.edu	36	3	171121779	171121779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	171121779	171121779	A	G	SNP	SAMD7	NM_182610	human	genbank	54_36p	1	provisional	missense	c.170	p.N57S	0	NULL	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
PRKCI	5584	broad.mit.edu	36	3	171482391	171482391	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	171482391	171482391	T	G	SNP	PRKCI	NM_002740	human	genbank	54_36p	1	reviewed	missense	c.1008	p.N336K	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
SKIL	6498	broad.mit.edu	36	3	171561587	171561587	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	3	171561587	171561587	T	C	SNP	SKIL	NM_005414	human	genbank	54_36p	1	validated	silent	c.774	p.T258	1	NULL	"HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain,superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind"	-	no_errors
SKIL	6498	broad.mit.edu	36	3	171592745	171592745	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	171592745	171592745	C	T	SNP	SKIL	NM_005414	human	genbank	54_36p	1	validated	missense	c.1901	p.A634V	1	NULL	"HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain,superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind"	-	no_errors
CLDN11	5010	broad.mit.edu	36	3	171633065	171633065	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	171633065	171633065	A	G	SNP	CLDN11	NM_005602	human	genbank	54_36p	1	reviewed	missense	c.451	p.I151V	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
TNIK	23043	broad.mit.edu	36	3	172284784	172284784	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	172284784	172284784	C	T	SNP	TNIK	NM_015028	human	genbank	54_36p	-1	provisional	missense	c.3023	p.R1008K	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
TNIK	23043	broad.mit.edu	36	3	172294438	172294438	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	WU-454			Illumina GAIIx	3	172294438	172294438	G	T	SNP	TNIK	NM_015028	human	genbank	54_36p	-1	provisional	missense	c.2605	p.P869T	0.97	NULL	"HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
FNDC3B	64778	broad.mit.edu	36	3	173563227	173563227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	173563227	173563227	C	A	SNP	FNDC3B	NM_022763	human	genbank	54_36p	1	validated	missense	c.2906	p.A969D	0.97	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
TNFSF10	8743	broad.mit.edu	36	3	173723832	173723833	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	173723832	173723833	CC	TT	DNP	TNFSF10	NM_003810	human	genbank	54_36p	-1	reviewed	missense	c.37_36	p.G13R	0.263:0.002	NULL	"superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF,PatternScan_TNF_1"	-	no_errors
SPATA16	83893	broad.mit.edu	36	3	174125897	174125897	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	174125897	174125897	C	A	SNP	SPATA16	NM_031955	human	genbank	54_36p	-1	validated	silent	c.1161	p.G387	0.98	NULL	superfamily_TPR-like	-	no_errors
SPATA16	83893	broad.mit.edu	36	3	174249497	174249497	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	174249497	174249497	T	C	SNP	SPATA16	NM_031955	human	genbank	54_36p	-1	validated	missense	c.694	p.T232A	1	superfamily_TPR-like	superfamily_TPR-like	-	no_errors
NLGN1	22871	broad.mit.edu	36	3	175008283	175008283	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	175008283	175008283	G	C	SNP	NLGN1	NM_014932	human	genbank	54_36p	1	reviewed	missense	c.613	p.V205L	1	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2"	-	no_errors
TBL1XR1	79718	broad.mit.edu	36	3	178252132	178252132	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	178252132	178252132	G	C	SNP	TBL1XR1	NM_024665	human	genbank	54_36p	-1	reviewed	missense	c.281	p.T94R	1	NULL	"HMMSmart_LisH,HMMPfam_LisH,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
ZMAT3	64393	broad.mit.edu	36	3	180268015	180268015	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	180268015	180268015	G	C	SNP	ZMAT3	NM_022470	human	genbank	54_36p	-1	reviewed	missense	c.220	p.L74V	1	"HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2"	"HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2"	-	no_errors
PIK3CA	5290	broad.mit.edu	36	3	180400347	180400347	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	180400347	180400347	A	G	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	silent	c.528	p.E176	1	"superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd"	###############################################################################################################################################################################################################################################################	-	no_errors
PIK3CA	5290	broad.mit.edu	36	3	180425287	180425287	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	180425287	180425287	C	A	SNP	PIK3CA	NM_006218	human	genbank	54_36p	1	reviewed	silent	c.2400	p.I800	1	"HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like"	###############################################################################################################################################################################################################################################################	-	no_errors
MFN1	55669	broad.mit.edu	36	3	180549437	180549437	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	3	180549437	180549437	T	A	SNP	MFN1	NM_033540	human	genbank	54_36p	1	reviewed	missense	c.104	p.F35Y	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin"	-	no_errors
MFN1	55669	broad.mit.edu	36	3	180579085	180579085	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	180579085	180579085	T	C	SNP	MFN1	NM_033540	human	genbank	54_36p	1	reviewed	missense	c.1451	p.L484P	1	NULL	"HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
USP13	8975	broad.mit.edu	36	3	180961631	180961631	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	180961631	180961631	C	G	SNP	USP13	NM_003940	human	genbank	54_36p	1	validated	silent	c.1986	p.A662	0.95	"superfamily_SSF54001,HMMPfam_UCH,HMMPfam_UBA,HMMSmart_UBA"	"HMMSmart_ZnF_UBP,HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_UBA,HMMSmart_UBA,superfamily_UBA_like,PatternScan_UCH_2_2"	-	no_errors
PEX5L	51555	broad.mit.edu	36	3	181010040	181010040	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	181010040	181010040	T	G	SNP	PEX5L	NM_016559	human	genbank	54_36p	-1	provisional	missense	c.1265	p.K422T	0.99	"superfamily_TPR-like,HMMSmart_SM00028"	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	-	no_errors
PEX5L	51555	broad.mit.edu	36	3	181010092	181010092	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	181010092	181010092	T	C	SNP	PEX5L	NM_016559	human	genbank	54_36p	-1	provisional	missense	c.1213	p.T405A	1	"HMMSmart_SM00028,superfamily_TPR-like"	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
TTC14	151613	broad.mit.edu	36	3	181810311	181810311	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	181810311	181810311	G	C	SNP	TTC14	NM_133462	human	genbank	54_36p	1	validated	missense	c.1600	p.D534H	1	NULL	"superfamily_Nucleic acid-binding proteins,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
TTC14	151613	broad.mit.edu	36	3	181810643	181810643	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	181810643	181810643	T	C	SNP	TTC14	NM_133462	human	genbank	54_36p	1	validated	silent	c.1932	p.Y644	0.02	NULL	"HMMPfam_TPR_1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
CCDC39	339829	broad.mit.edu	36	3	181831983	181831983	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	181831983	181831983	C	G	SNP	CCDC39	NM_181426	human	genbank	54_36p	-1	validated	missense	c.1966	p.E656Q	1	NULL	superfamily_Prefoldin	-	no_errors
CCDC39	339829	broad.mit.edu	36	3	181832026	181832026	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	181832026	181832026	T	C	SNP	CCDC39	NM_181426	human	genbank	54_36p	-1	validated	silent	c.1923	p.R641	1	NULL	superfamily_Prefoldin	-	no_errors
CCDC39	339829	broad.mit.edu	36	3	181861186	181861186	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	181861186	181861186	T	C	SNP	CCDC39	NM_181426	human	genbank	54_36p	-1	validated	missense	c.382	p.K128E	1	NULL	superfamily_Prefoldin	-	no_errors
ATP11B	23200	broad.mit.edu	36	3	184085261	184085261	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	184085261	184085261	G	T	SNP	ATP11B	NM_014616	human	genbank	54_36p	1	validated	missense	c.2536	p.A846S	1	superfamily_SSF56784	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660"	-	no_errors
DCUN1D1	54165	broad.mit.edu	36	3	184164449	184164449	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	184164449	184164449	A	C	SNP	DCUN1D1	NM_020640	human	genbank	54_36p	-1	validated	missense	c.303	p.S101R	1	NULL	"superfamily_UBA-like,HMMPfam_DUF298"	-	no_errors
LAMP3	27074	broad.mit.edu	36	3	184354780	184354780	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	184354780	184354780	A	G	SNP	LAMP3	NM_014398	human	genbank	54_36p	-1	validated	missense	c.143	p.I48T	0	NULL	HMMPfam_Lamp	-	no_errors
B3GNT5	84002	broad.mit.edu	36	3	184470994	184470994	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	184470994	184470994	C	A	SNP	B3GNT5	NM_032047	human	genbank	54_36p	1	reviewed	nonsense	c.714	p.Y238*	1	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
MCF2L2	23101	broad.mit.edu	36	3	184500672	184500672	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	184500672	184500672	G	A	SNP	MCF2L2	NM_015078	human	genbank	54_36p	-1	validated	silent	c.1120	p.L374	0.05	"superfamily_Spectrin repeat,HMMSmart_SM00150"	"HMMSmart_SM00516,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
KLHL6	89857	broad.mit.edu	36	3	184700167	184700168	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	184700167	184700168	GC	AA	DNP	KLHL6	NM_130446	human	genbank	54_36p	-1	validated	missense	c.1052_1051	p.A351F	1.000:1.000	superfamily_Gal_oxid_central	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
KLHL24	54800	broad.mit.edu	36	3	184879744	184879744	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	184879744	184879744	C	G	SNP	KLHL24	NM_017644	human	genbank	54_36p	1	validated	nonsense	c.1779	p.Y593*	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
YEATS2	55689	broad.mit.edu	36	3	184924915	184924915	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	184924915	184924915	T	A	SNP	YEATS2	NM_018023	human	genbank	54_36p	1	provisional	silent	c.552	p.I184	0.01	NULL	HMMPfam_YEATS	-	no_errors
ABCC5	10057	broad.mit.edu	36	3	185121873	185121873	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	185121873	185121873	A	T	SNP	ABCC5	NM_005688	human	genbank	54_36p	-1	reviewed	missense	c.4223	p.F1408Y	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
HTR3C	170572	broad.mit.edu	36	3	185256761	185256761	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	185256761	185256761	G	A	SNP	HTR3C	NM_130770	human	genbank	54_36p	1	reviewed	missense	c.382	p.V128M	0.29	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
HTR3E	285242	broad.mit.edu	36	3	185301983	185301983	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185301983	185301983	T	C	SNP	HTR3E	NM_182589	human	genbank	54_36p	1	reviewed	missense	c.296	p.L99P	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
EIF2B5	8893	broad.mit.edu	36	3	185343300	185343300	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	185343300	185343300	G	C	SNP	EIF2B5	NM_003907	human	genbank	54_36p	1	validated	missense	c.1586	p.S529T	1	NULL	"superfamily_SSF53448,superfamily_Trimer_LpxA_like,HMMPfam_Hexapep,superfamily_ARM-type_fold,HMMSmart_eIF5C,HMMPfam_W2"	-	no_errors
EIF2B5	8893	broad.mit.edu	36	3	185344623	185344623	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185344623	185344623	C	T	SNP	EIF2B5	NM_003907	human	genbank	54_36p	1	validated	missense	c.1912	p.R638C	1	"HMMSmart_eIF5C,superfamily_ARM-type_fold"	"HMMPfam_Hexapep,HMMPfam_W2,HMMSmart_eIF5C,superfamily_Trimer_LpxA_like,superfamily_ARM-type_fold,superfamily_SSF53448"	-	no_errors
DVL3	1857	broad.mit.edu	36	3	185365317	185365317	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185365317	185365317	G	A	SNP	DVL3	NM_004423	human	genbank	54_36p	1	reviewed	missense	c.503	p.R168Q	1	HMMPfam_Dishevelled	"HMMPfam_DIX,HMMSmart_DAX,HMMPfam_Dishevelled,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP"	-	no_errors
ABCF3	55324	broad.mit.edu	36	3	185391721	185391721	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185391721	185391721	A	T	SNP	ABCF3	NM_018358	human	genbank	54_36p	1	validated	missense	c.1553	p.E518V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCF3	55324	broad.mit.edu	36	3	185393112	185393112	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185393112	185393112	C	G	SNP	ABCF3	NM_018358	human	genbank	54_36p	1	validated	silent	c.1599	p.T533	1	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ECE2	9718	broad.mit.edu	36	3	185484334	185484334	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	185484334	185484334	C	T	SNP	ECE2	NM_014693	human	genbank	54_36p	1	validated	missense	c.1238	p.T413M	0.83	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
ECE2	9718	broad.mit.edu	36	3	185489944	185489944	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185489944	185489944	G	A	SNP	ECE2	NM_014693	human	genbank	54_36p	1	validated	missense	c.1754	p.R585Q	0.9	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M13_N,HMMPfam_Methyltransf_11,HMMPfam_Peptidase_M13,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
EIF4G1	1981	broad.mit.edu	36	3	185523991	185523991	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185523991	185523991	A	G	SNP	EIF4G1	NM_182917	human	genbank	54_36p	1	reviewed	silent	c.2190	p.A730	0.98	NULL	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,HMMSmart_SM00515,HMMPfam_W2"	-	no_errors
CHRD	8646	broad.mit.edu	36	3	185585115	185585115	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185585115	185585115	G	A	SNP	CHRD	NM_003741	human	genbank	54_36p	1	reviewed	missense	c.1537	p.G513R	0.98	"HMMPfam_CHRD,HMMSmart_SM00754"	"HMMPfam_VWC,HMMSmart_SM00214,HMMPfam_CHRD,HMMSmart_SM00754,PatternScan_VWFC_1"	-	no_errors
CHRD	8646	broad.mit.edu	36	3	185587198	185587198	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	185587198	185587198	G	A	SNP	CHRD	NM_003741	human	genbank	54_36p	1	reviewed	silent	c.2157	p.A719	0.78	"HMMPfam_VWC,HMMSmart_SM00214"	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_CHRD,HMMSmart_SM00754"	-	no_errors
EPHB3	2049	broad.mit.edu	36	3	185773023	185773023	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	185773023	185773023	C	A	SNP	EPHB3	NM_004443	human	genbank	54_36p	1	reviewed	missense	c.221	p.P74H	1	"superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB3	2049	broad.mit.edu	36	3	185780928	185780928	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185780928	185780928	G	C	SNP	EPHB3	NM_004443	human	genbank	54_36p	1	reviewed	missense	c.2217	p.L739F	1	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like"	###############################################################################################################################################################################################################################################################	-	no_errors
MAGEF1	64110	broad.mit.edu	36	3	185912104	185912104	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	185912104	185912104	A	T	SNP	MAGEF1	NM_022149	human	genbank	54_36p	-1	reviewed	nonsense	c.200	p.L67*	0	NULL	HMMPfam_MAGE	-	no_errors
MAGEF1	64110	broad.mit.edu	36	3	185912196	185912196	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	185912196	185912196	G	A	SNP	MAGEF1	NM_022149	human	genbank	54_36p	-1	reviewed	silent	c.108	p.R36	0	NULL	HMMPfam_MAGE	-	no_errors
VPS8	23355	broad.mit.edu	36	3	186068536	186068536	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	186068536	186068536	A	G	SNP	VPS8	NM_001009921	human	genbank	54_36p	1	validated	missense	c.1501	p.R501G	1	NULL	"superfamily_WD40_like,superfamily_ARM-type_fold,superfamily_SSF57850,HMMSmart_RING"	-	no_errors
C3orf70	285382	broad.mit.edu	36	3	186283923	186283923	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	186283923	186283923	T	C	SNP	C3orf70	NM_001025266	human	genbank	54_36p	-1	predicted	missense	c.319	p.K107E	1	NULL	NULL	-	no_errors
EHHADH	1962	broad.mit.edu	36	3	186393440	186393440	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	186393440	186393440	C	G	SNP	EHHADH	NM_001966	human	genbank	54_36p	-1	validated	silent	c.1440	p.V480	1	"PatternScan_3HCDH,superfamily_6DGDH_C_like,HMMPfam_3HCDH"	"superfamily_SSF52096,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE,superfamily_NAD(P)-bd,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6DGDH_C_like,HMMPfam_3HCDH"	-	no_errors
LIPH	200879	broad.mit.edu	36	3	186734077	186734077	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	186734077	186734077	C	T	SNP	LIPH	NM_139248	human	genbank	54_36p	-1	reviewed	missense	c.502	p.D168N	0.33	"superfamily_SSF53474,HMMPfam_Lipase"	"PatternScan_LIPASE_SER,superfamily_SSF53474,HMMPfam_Lipase"	-	no_errors
TRA2B	6434	broad.mit.edu	36	3	187122592	187122592	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	187122592	187122592	T	C	SNP	TRA2B	NM_004593	human	genbank	54_36p	-1	validated	missense	c.539	p.N180S	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
TRA2B	6434	broad.mit.edu	36	3	187124302	187124302	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	3	187124302	187124302	A	-	DEL	TRA2B	NM_004593	human	genbank	54_36p	-1	validated	frame_shift_del	c.498	p.F166fs	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"(deletion:cds_exon[187124278,187124466])"	no_errors
ETV5	2119	broad.mit.edu	36	3	187305975	187305975	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	187305975	187305975	T	A	SNP	ETV5	NM_004454	human	genbank	54_36p	-1	validated	silent	c.138	p.L46	0.99	HMMPfam_ETS_PEA3_N	"HMMPfam_ETS_PEA3_N,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
DNAJB11	51726	broad.mit.edu	36	3	187778186	187778186	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	187778186	187778186	C	A	SNP	DNAJB11	NM_016306	human	genbank	54_36p	1	validated	missense	c.359	p.T120N	1	superfamily_Chaperone J-domain	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40/DnaJ peptide-binding domain,HMMPfam_DnaJ_C"	-	no_errors
FETUB	26998	broad.mit.edu	36	3	187841533	187841533	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	187841533	187841533	C	G	SNP	FETUB	NM_014375	human	genbank	54_36p	1	reviewed	missense	c.246	p.F82L	1	"HMMSmart_SM00043,superfamily_Cystatin/monellin,PatternScan_FETUIN_1,HMMPfam_Cystatin"	"HMMSmart_SM00043,superfamily_Cystatin/monellin,PatternScan_FETUIN_1,HMMPfam_Cystatin,PatternScan_FETUIN_2"	-	no_errors
KNG1	3827	broad.mit.edu	36	3	187942128	187942128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	3	187942128	187942128	C	T	SNP	KNG1	NM_001102416	human	genbank	54_36p	1	validated	missense	c.1249	p.R417W	0.09	NULL	"HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin,PatternScan_CYSTATIN"	-	no_errors
RTP1	132112	broad.mit.edu	36	3	188400419	188400419	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	188400419	188400419	C	T	SNP	RTP1	NM_153708	human	genbank	54_36p	1	validated	missense	c.659	p.A220V	1	NULL	NULL	-	no_errors
RTP1	132112	broad.mit.edu	36	3	188400438	188400438	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	188400438	188400438	G	A	SNP	RTP1	NM_153708	human	genbank	54_36p	1	validated	silent	c.678	p.S226	0.63	NULL	NULL	-	no_errors
MASP1	5648	broad.mit.edu	36	3	188452221	188452221	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	188452221	188452221	T	C	SNP	MASP1	NM_139125	human	genbank	54_36p	-1	reviewed	silent	c.906	p.P302	0.34	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	###############################################################################################################################################################################################################################################################	-	no_errors
MASP1	5648	broad.mit.edu	36	3	188457170	188457170	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	188457170	188457170	C	A	SNP	MASP1	NM_139125	human	genbank	54_36p	-1	reviewed	silent	c.720	p.V240	1	"HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB"	###############################################################################################################################################################################################################################################################	-	no_errors
BCL6	604	broad.mit.edu	36	3	188930009	188930009	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	188930009	188930009	T	A	SNP	BCL6	NM_001706	human	genbank	54_36p	-1	reviewed	missense	c.878	p.Y293F	0.97	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
LPP	4026	broad.mit.edu	36	3	190074923	190074923	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	190074923	190074923	A	C	SNP	LPP	NM_005578	human	genbank	54_36p	1	validated	missense	c.1801	p.I601L	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
TP63	8626	broad.mit.edu	36	3	190939252	190939252	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	190939252	190939252	A	T	SNP	TP63	NM_003722	human	genbank	54_36p	1	reviewed	missense	c.319	p.M107L	1	NULL	"HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain"	-	no_errors
TP63	8626	broad.mit.edu	36	3	191068418	191068418	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	191068418	191068418	A	C	SNP	TP63	NM_003722	human	genbank	54_36p	1	reviewed	missense	c.985	p.T329P	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"HMMSmart_SM00454,PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,HMMPfam_P53"	-	no_errors
LEPREL1	55214	broad.mit.edu	36	3	191320765	191320765	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	191320765	191320765	G	C	SNP	LEPREL1	NM_018192	human	genbank	54_36p	-1	validated	silent	c.450	p.P150	1	superfamily_TPR-like	"superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy,PatternScan_ER_TARGET"	-	no_errors
CLDN16	10686	broad.mit.edu	36	3	191608926	191608926	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	191608926	191608926	C	A	SNP	CLDN16	NM_006580	human	genbank	54_36p	1	reviewed	missense	c.722	p.A241D	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
FGF12	2257	broad.mit.edu	36	3	193608562	193608562	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	193608562	193608562	A	G	SNP	FGF12	NM_021032	human	genbank	54_36p	-1	reviewed	missense	c.145	p.F49L	1	superfamily_Cytokine	"superfamily_Cytokine,HMMSmart_SM00442,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
C3orf59	151963	broad.mit.edu	36	3	193999044	193999044	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	193999044	193999044	G	C	SNP	C3orf59	NM_178496	human	genbank	54_36p	-1	validated	missense	c.1295	p.T432S	1	NULL	NULL	-	no_errors
C3orf59	151963	broad.mit.edu	36	3	193999851	193999851	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	193999851	193999851	C	G	SNP	C3orf59	NM_178496	human	genbank	54_36p	-1	validated	missense	c.488	p.C163S	1	NULL	NULL	-	no_errors
HES1	3280	broad.mit.edu	36	3	195338685	195338685	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	195338685	195338685	C	T	SNP	HES1	NM_005524	human	genbank	54_36p	1	reviewed	missense	c.812	p.A271V	0.83	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMPfam_Hairy_orange,HMMSmart_ORANGE"	-	no_errors
CPN2	1370	broad.mit.edu	36	3	195544077	195544077	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	195544077	195544077	C	G	SNP	CPN2	NM_001080513	human	genbank	54_36p	-1	validated	silent	c.1050	p.T350	0	"superfamily_SSF52047,HMMSmart_LRR_TYP,HMMPfam_LRR_1"	"HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52047,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT"	-	no_errors
CPN2	1370	broad.mit.edu	36	3	195544478	195544478	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	195544478	195544478	C	A	SNP	CPN2	NM_001080513	human	genbank	54_36p	-1	validated	missense	c.649	p.G217C	0	"HMMSmart_LRR_TYP,superfamily_SSF52047"	"HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047"	-	no_errors
LRRC15	131578	broad.mit.edu	36	3	195561776	195561776	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	195561776	195561776	A	G	SNP	LRRC15	NM_130830	human	genbank	54_36p	-1	validated	missense	c.1292	p.I431T	0.99	"superfamily_SSF52058,HMMSmart_LRRCT"	"superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT"	-	no_errors
GP5	2814	broad.mit.edu	36	3	195599383	195599384	+	Missense_Mutation	DNP	GG	GG	CA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	195599383	195599384	GG	CA	DNP	GP5	NM_004488	human	genbank	54_36p	-1	validated	missense	c.918_917	p.P306L	0.000:0.197	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1"	"superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT"	-	no_errors
APOD	347	broad.mit.edu	36	3	196777115	196777115	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	196777115	196777115	A	G	SNP	APOD	NM_001647	human	genbank	54_36p	-1	reviewed	missense	c.515	p.I172T	0.99	"superfamily_Lipocalins,HMMPfam_Lipocalin_2"	"superfamily_Lipocalins,PatternScan_LIPOCALIN,HMMPfam_Lipocalin_2"	-	no_errors
APOD	347	broad.mit.edu	36	3	196777212	196777212	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	196777212	196777212	G	T	SNP	APOD	NM_001647	human	genbank	54_36p	-1	reviewed	missense	c.418	p.L140I	1	"superfamily_Lipocalins,HMMPfam_Lipocalin_2"	"PatternScan_LIPOCALIN,superfamily_Lipocalins,HMMPfam_Lipocalin_2"	-	no_errors
MUC4	4585	broad.mit.edu	36	3	196961495	196961495	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	196961495	196961495	T	G	SNP	MUC4	NM_018406	human	genbank	54_36p	-1	reviewed	missense	c.6239	p.Y2080S	0.56	"superfamily_EGF/Laminin,HMMSmart_SM00181"	"HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin"	-	no_errors
MUC4	4585	broad.mit.edu	36	3	196977572	196977572	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	196977572	196977572	C	A	SNP	MUC4	NM_018406	human	genbank	54_36p	-1	reviewed	nonsense	c.4147	p.E1383*	0.13	"HMMPfam_AMOP,HMMSmart_SM00723"	"HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin"	-	no_errors
MUC4	4585	broad.mit.edu	36	3	196984202	196984202	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	196984202	196984202	C	G	SNP	MUC4	NM_018406	human	genbank	54_36p	-1	reviewed	missense	c.3453	p.W1151C	1	HMMSmart_SM00539	"HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin"	-	no_errors
MUC4	4585	broad.mit.edu	36	3	197000647	197000647	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	197000647	197000647	G	C	SNP	MUC4	NM_018406	human	genbank	54_36p	-1	reviewed	silent	c.2199	p.S733	0.02	NULL	"HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin"	-	no_errors
TNK2	10188	broad.mit.edu	36	3	197079665	197079665	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	197079665	197079665	G	A	SNP	TNK2	NM_001010938	human	genbank	54_36p	-1	reviewed	missense	c.2090	p.T697M	1	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_GTPase_binding"	-	no_errors
TFRC	7037	broad.mit.edu	36	3	197264753	197264753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	3	197264753	197264753	G	C	SNP	TFRC	NM_003234	human	genbank	54_36p	-1	validated	missense	c.1973	p.T658R	0.04	"superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer"	"superfamily_Zn-dependent exopeptidases,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer"	-	no_errors
ZDHHC19	131540	broad.mit.edu	36	3	197409615	197409615	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	197409615	197409615	G	A	SNP	ZDHHC19	NM_001039617	human	genbank	54_36p	-1	validated	missense	c.878	p.A293V	0	NULL	HMMPfam_zf-DHHC	-	no_errors
PCYT1A	5130	broad.mit.edu	36	3	197481734	197481734	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	3	197481734	197481734	G	A	SNP	PCYT1A	NM_005017	human	genbank	54_36p	-1	provisional	silent	c.66	p.N22	1	NULL	"superfamily_SSF52374,HMMPfam_CTP_transf_2"	-	no_errors
UBXN7	26043	broad.mit.edu	36	3	197603086	197603086	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	197603086	197603086	C	G	SNP	UBXN7	NM_015562	human	genbank	54_36p	-1	validated	missense	c.463	p.E155Q	1	HMMSmart_SM00594	"superfamily_UBA-like,HMMSmart_SM00594,HMMSmart_SM00166,HMMPfam_UBX,superfamily_Ubiquitin-like"	-	no_errors
C3orf43	255798	broad.mit.edu	36	3	197719526	197719526	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	197719526	197719526	G	A	SNP	C3orf43	NM_001077657	human	genbank	54_36p	-1	validated	missense	c.274	p.L92F	0.87	NULL	NULL	-	no_errors
LRRC33	375387	broad.mit.edu	36	3	197872123	197872123	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	197872123	197872123	G	C	SNP	LRRC33	NM_198565	human	genbank	54_36p	1	provisional	silent	c.1212	p.L404	0.18	"superfamily_SSF52058,HMMSmart_LRR_TYP"	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
LRRC33	375387	broad.mit.edu	36	3	197872846	197872846	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	197872846	197872846	G	T	SNP	LRRC33	NM_198565	human	genbank	54_36p	1	provisional	silent	c.1935	p.R645	0.24	NULL	"HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
C3orf34	84984	broad.mit.edu	36	3	197918835	197918835	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	197918835	197918835	G	A	SNP	C3orf34	NM_032898	human	genbank	54_36p	-1	validated	missense	c.476	p.S159L	1	NULL	NULL	-	no_errors
PIGZ	80235	broad.mit.edu	36	3	198158883	198158883	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	198158883	198158883	C	T	SNP	PIGZ	NM_025163	human	genbank	54_36p	-1	reviewed	missense	c.1282	p.G428S	1	HMMPfam_Glyco_transf_22	HMMPfam_Glyco_transf_22	-	no_errors
PIGZ	80235	broad.mit.edu	36	3	198163285	198163285	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	3	198163285	198163285	T	A	SNP	PIGZ	NM_025163	human	genbank	54_36p	-1	reviewed	silent	c.15	p.G5	0	NULL	HMMPfam_Glyco_transf_22	-	no_errors
DLG1	1739	broad.mit.edu	36	3	198276997	198276997	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	198276997	198276997	T	C	SNP	DLG1	NM_004087	human	genbank	54_36p	-1	validated	missense	c.2278	p.K760E	1	"superfamily_SH3-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072"	###############################################################################################################################################################################################################################################################	-	no_errors
DLG1	1739	broad.mit.edu	36	3	198327346	198327346	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	3	198327346	198327346	G	C	SNP	DLG1	NM_004087	human	genbank	54_36p	-1	validated	missense	c.1391	p.P464R	1	"superfamily_PDZ domain-like,HMMPfam_PDZ_assoc"	###############################################################################################################################################################################################################################################################	-	no_errors
BDH1	622	broad.mit.edu	36	3	198757635	198757635	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	3	198757635	198757635	C	A	SNP	BDH1	NM_004051	human	genbank	54_36p	-1	reviewed	missense	c.77	p.G26V	0.09	NULL	"superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
LMLN	89782	broad.mit.edu	36	3	199171527	199171527	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	3	199171527	199171527	G	T	SNP	LMLN	NM_033029	human	genbank	54_36p	1	reviewed	missense	c.38	p.W13L	0	NULL	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M8"	-	no_errors
ZNF718	255403	broad.mit.edu	36	4	145481	145481	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	145481	145481	G	C	SNP	ZNF718	ENST00000400172	human	ensembl	54_36p	1	known	missense	c.345	p.E115D	1	NULL	NULL	-	no_errors
ZNF721	170960	broad.mit.edu	36	4	426638	426638	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	426638	426638	G	A	SNP	ZNF721	NM_133474	human	genbank	54_36p	-1	validated	nonsense	c.1618	p.Q540*	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PIGG	54872	broad.mit.edu	36	4	505043	505043	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	505043	505043	G	A	SNP	PIGG	ENST00000383028	human	ensembl	54_36p	1	known	missense	c.914	p.G305E	1	NULL	superfamily_Alkaline_phosphatase_core	-	no_errors
PIGG	54872	broad.mit.edu	36	4	514498	514498	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	514498	514498	G	A	SNP	PIGG	NM_017733	human	genbank	54_36p	1	validated	missense	c.2511	p.M837I	1	NULL	superfamily_Alkaline_phosphatase_core	-	no_errors
PDE6B	5158	broad.mit.edu	36	4	650316	650322	+	Splice_Site	DEL	CCAGCCT	-	CCAGCCT	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	CCAGCCT	CCAGCCT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	650316	650322	CCAGCCT	-	DEL	PDE6B	NM_000283	human	genbank	54_36p	1	reviewed	splice_site_del	c.2269-4_2269-1	e20-1	0.000:0.073:0.987:1.000:1.000:1.000:0.998	-	-	"(deletion:intron[649119,650319], cds_exon[650320,650403])"	no_errors
MFSD7	84179	broad.mit.edu	36	4	670353	670353	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	670353	670353	A	C	SNP	MFSD7	NM_032219	human	genbank	54_36p	-1	provisional	missense	c.262	p.W88G	0.97	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
FGFRL1	53834	broad.mit.edu	36	4	1006193	1006193	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	1006193	1006193	C	T	SNP	FGFRL1	NM_001004356	human	genbank	54_36p	1	reviewed	silent	c.282	p.A94	0.76	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG"	-	no_errors
MAEA	10296	broad.mit.edu	36	4	1295928	1295928	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	1295928	1295928	G	C	SNP	MAEA	NM_001017405	human	genbank	54_36p	1	reviewed	missense	c.231	p.K77N	1	NULL	"HMMSmart_SM00667,HMMSmart_SM00668,HMMSmart_SM00757,superfamily_RING/U-box"	-	no_errors
CRIPAK	285464	broad.mit.edu	36	4	1379118	1379118	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	1379118	1379118	G	A	SNP	CRIPAK	NM_175918	human	genbank	54_36p	1	validated	silent	c.819	p.T273	0	HMMSmart_PostSET	HMMSmart_PostSET	-	no_errors
TACC3	10460	broad.mit.edu	36	4	1699370	1699370	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	1699370	1699370	C	T	SNP	TACC3	NM_006342	human	genbank	54_36p	1	reviewed	missense	c.443	p.A148V	0	NULL	HMMPfam_TACC	-	no_errors
TACC3	10460	broad.mit.edu	36	4	1700162	1700162	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	1700162	1700162	A	G	SNP	TACC3	NM_006342	human	genbank	54_36p	1	reviewed	missense	c.1235	p.D412G	1	NULL	HMMPfam_TACC	-	no_errors
TACC3	10460	broad.mit.edu	36	4	1712463	1712482	+	Frame_Shift_Del	DEL	CTTCAAGCGTTTTGAGAAAC	-	CTTCAAGCGTTTTGAGAAAC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CTTCAAGCGTTTTGAGAAAC	CTTCAAGCGTTTTGAGAAAC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	1712463	1712482	CTTCAAGCGTTTTGAGAAAC	-	DEL	TACC3	NM_006342	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2175_2194	p.F726fs	0.996:1.000:1.000:1.000:1.000:1.000:0.997:0.993:0.984:0.017:0.024:0.035:0.020:0.997:1.000:0.999:1.000:1.000:1.000:1.000	HMMPfam_TACC	HMMPfam_TACC	"(deletion:cds_exon[1712351,1712511])"	no_errors
FGFR3	2261	broad.mit.edu	36	4	1777374	1777374	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	1777374	1777374	G	T	SNP	FGFR3	NM_000142	human	genbank	54_36p	1	reviewed	missense	c.1745	p.C582F	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
WHSC1	7468	broad.mit.edu	36	4	1889755	1889755	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	1889755	1889755	G	A	SNP	WHSC1	NM_001042424	human	genbank	54_36p	1	reviewed	silent	c.1017	p.E339	1	superfamily_Tudor/PWWP/MBT	###############################################################################################################################################################################################################################################################	-	no_errors
WHSC2	7469	broad.mit.edu	36	4	1955019	1955019	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	1955019	1955019	C	A	SNP	WHSC2	NM_005663	human	genbank	54_36p	-1	reviewed	missense	c.1412	p.C471F	1	NULL	NULL	-	no_errors
POLN	353497	broad.mit.edu	36	4	2044518	2044518	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	2044518	2044518	A	C	SNP	POLN	ENST00000253313	human	ensembl	54_36p	-1	known	splice_site	c.1563+2	e19+2	0.11	-	-	-	no_stop_codon
FAM193A	8603	broad.mit.edu	36	4	2618296	2618296	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	2618296	2618296	G	A	SNP	C4orf8	NM_003704	human	genbank	54_36p	1	validated	missense	c.377	p.R126H	0.35	NULL	NULL	-	no_errors
SH3BP2	6452	broad.mit.edu	36	4	2792266	2792267	+	Missense_Mutation	DNP	CA	CA	AT	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	2792266	2792267	CA	AT	DNP	SH3BP2	NM_003023	human	genbank	54_36p	1	reviewed	missense	c.124_125	p.Q42M	1.000:1.000	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
HTT	3064	broad.mit.edu	36	4	3178152	3178152	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	3178152	3178152	C	T	SNP	HTT	NM_002111	human	genbank	54_36p	1	reviewed	silent	c.5850	p.S1950	0.99	NULL	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
HTT	3064	broad.mit.edu	36	4	3191722	3191722	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	3191722	3191722	T	A	SNP	HTT	NM_002111	human	genbank	54_36p	1	reviewed	missense	c.7258	p.W2420R	1	NULL	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
HTT	3064	broad.mit.edu	36	4	3210135	3210135	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	3210135	3210135	G	T	SNP	HTT	NM_002111	human	genbank	54_36p	1	reviewed	splice_site	c.9054+1	e65+1	1	-	-	-	no_errors
OTOP1	133060	broad.mit.edu	36	4	4250428	4250428	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	4250428	4250428	G	A	SNP	OTOP1	NM_177998	human	genbank	54_36p	-1	provisional	missense	c.1034	p.S345L	0.98	HMMPfam_DUF270	HMMPfam_DUF270	-	no_errors
MSX1	4487	broad.mit.edu	36	4	4915395	4915395	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	4915395	4915395	T	G	SNP	MSX1	NM_002448	human	genbank	54_36p	1	reviewed	missense	c.536	p.F179C	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
EVC2	132884	broad.mit.edu	36	4	5675225	5675225	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	5675225	5675225	G	A	SNP	EVC2	NM_147127	human	genbank	54_36p	-1	validated	missense	c.2441	p.A814V	0.01	NULL	NULL	-	no_errors
C4orf50	389197	broad.mit.edu	36	4	6026355	6026355	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	6026355	6026355	G	T	SNP	FLJ46481	NM_207405	human	genbank	54_36p	-1	predicted	missense	c.340	p.Q114K	0	NULL	NULL	-	no_errors
JAKMIP1	152789	broad.mit.edu	36	4	6137542	6137542	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	6137542	6137542	C	T	SNP	JAKMIP1	NM_001099433	human	genbank	54_36p	-1	validated	missense	c.886	p.E296K	1	NULL	NULL	-	no_errors
PPP2R2C	5522	broad.mit.edu	36	4	6425167	6425167	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	6425167	6425167	G	T	SNP	PPP2R2C	NM_020416	human	genbank	54_36p	-1	reviewed	silent	c.609	p.I203	1	"superfamily_WD40 repeat-like,HMMPfam_PP2A_B_subs_rcg"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2"	-	no_errors
PPP2R2C	5522	broad.mit.edu	36	4	6425275	6425275	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	6425275	6425275	G	T	SNP	PPP2R2C	NM_020416	human	genbank	54_36p	-1	reviewed	silent	c.501	p.I167	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_subs_rcg"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_PR55_1,PatternScan_PR55_2,HMMPfam_PP2A_B_N,HMMPfam_PP2A_B_subs_rcg"	-	no_errors
MAN2B2	23324	broad.mit.edu	36	4	6645974	6645974	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	6645974	6645974	C	G	SNP	MAN2B2	NM_015274	human	genbank	54_36p	1	validated	missense	c.854	p.P285R	1	"superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38"	"superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38,superfamily_Families 57/38 glycoside transferase middle domain,HMMPfam_Alpha-mann_mid,superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C"	-	no_errors
MAN2B2	23324	broad.mit.edu	36	4	6649768	6649768	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	6649768	6649768	A	G	SNP	MAN2B2	NM_015274	human	genbank	54_36p	1	validated	missense	c.1085	p.Y362C	1	"HMMPfam_Alpha-mann_mid,superfamily_Families 57/38 glycoside transferase middle domain"	"HMMPfam_Glyco_hydro_38,superfamily_Galactose mutarotase-like,superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_Families 57/38 glycoside transferase middle domain"	-	no_errors
MAN2B2	23324	broad.mit.edu	36	4	6650855	6650855	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	6650855	6650855	T	A	SNP	MAN2B2	NM_015274	human	genbank	54_36p	1	validated	silent	c.1278	p.T426	0.96	"HMMPfam_Alpha-mann_mid,superfamily_Families 57/38 glycoside transferase middle domain"	"HMMPfam_Glyco_hydro_38,superfamily_Galactose mutarotase-like,superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_Families 57/38 glycoside transferase middle domain"	-	no_errors
CNO	55330	broad.mit.edu	36	4	6769194	6769194	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	6769194	6769194	G	C	SNP	CNO	NM_018366	human	genbank	54_36p	1	reviewed	silent	c.357	p.P119	0.19	NULL	NULL	-	no_errors
KIAA0232	9778	broad.mit.edu	36	4	6913893	6913893	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	6913893	6913893	G	T	SNP	KIAA0232	NM_001100590	human	genbank	54_36p	1	validated	missense	c.883	p.A295S	1	NULL	NULL	-	no_errors
TADA2B	93624	broad.mit.edu	36	4	7107290	7107291	+	Missense_Mutation	DNP	CT	CT	AG	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	7107290	7107291	CT	AG	DNP	TADA2B	NM_152293	human	genbank	54_36p	1	validated	missense	c.871_872	p.L291R	1.000:1.000	NULL	"HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
SORCS2	57537	broad.mit.edu	36	4	7766982	7766982	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	7766982	7766982	G	A	SNP	SORCS2	NM_020777	human	genbank	54_36p	1	reviewed	missense	c.1655	p.R552Q	0.86	HMMSmart_SM00602	"superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD"	-	no_errors
HTRA3	94031	broad.mit.edu	36	4	8346768	8346768	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	8346768	8346768	G	A	SNP	HTRA3	NM_053044	human	genbank	54_36p	1	provisional	missense	c.991	p.A331T	1	"superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin"	"HMMSmart_SM00121,HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ"	-	no_errors
C4orf23	152992	broad.mit.edu	36	4	8528564	8528564	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	8528564	8528564	C	T	SNP	C4orf23	NM_152544	human	genbank	54_36p	1	predicted	missense	c.1034	p.P345L	1	NULL	HMMPfam_AdoMet_MTase	-	no_errors
GPR78	27201	broad.mit.edu	36	4	8635192	8635192	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	8635192	8635192	C	T	SNP	GPR78	NM_080819	human	genbank	54_36p	1	validated	missense	c.703	p.R235C	0.81	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
CPZ	8532	broad.mit.edu	36	4	8656714	8656714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	8656714	8656714	G	A	SNP	CPZ	NM_001014447	human	genbank	54_36p	1	reviewed	missense	c.608	p.R203H	1	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain"	-	no_errors
CLNK	116449	broad.mit.edu	36	4	10182479	10182479	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	10182479	10182479	T	C	SNP	CLNK	NM_052964	human	genbank	54_36p	-1	validated	missense	c.134	p.K45R	0.02	NULL	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
RAB28	9364	broad.mit.edu	36	4	12979362	12979362	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	12979362	12979362	T	G	SNP	RAB28	NM_001017979	human	genbank	54_36p	-1	provisional	missense	c.584	p.K195T	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
RAB28	9364	broad.mit.edu	36	4	12992272	12992272	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	12992272	12992272	G	A	SNP	RAB28	NM_001017979	human	genbank	54_36p	-1	provisional	missense	c.436	p.R146W	1	"HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
BOD1L	259282	broad.mit.edu	36	4	13212791	13212791	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	13212791	13212791	T	C	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	missense	c.4831	p.K1611E	1	superfamily_SSF81995	"superfamily_SSF81995,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
BOD1L	259282	broad.mit.edu	36	4	13213992	13213992	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	13213992	13213992	T	A	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	missense	c.3630	p.Q1210H	0	superfamily_SSF81995	"HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF81995"	-	no_errors
CC2D2A	57545	broad.mit.edu	36	4	15178202	15178202	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	15178202	15178202	A	C	SNP	CC2D2A	NM_001080522	human	genbank	54_36p	1	validated	missense	c.3287	p.Q1096P	1	HMMSmart_C2	HMMSmart_C2	-	no_errors
CD38	952	broad.mit.edu	36	4	15427354	15427354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	15427354	15427354	G	C	SNP	CD38	NM_001775	human	genbank	54_36p	1	validated	missense	c.356	p.C119S	0.94	"superfamily_ADP ribosyl cyclase-like,HMMPfam_Rib_hydrolayse"	"superfamily_ADP ribosyl cyclase-like,HMMPfam_Rib_hydrolayse"	-	no_errors
CD38	952	broad.mit.edu	36	4	15444986	15444986	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	15444986	15444986	A	T	SNP	CD38	NM_001775	human	genbank	54_36p	1	validated	missense	c.548	p.N183I	0	"HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like"	"HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like"	-	no_errors
PROM1	8842	broad.mit.edu	36	4	15596715	15596715	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	15596715	15596715	T	C	SNP	PROM1	NM_006017	human	genbank	54_36p	-1	reviewed	missense	c.2174	p.N725S	0.84	HMMPfam_Prominin	HMMPfam_Prominin	-	no_errors
PPARGC1A	10891	broad.mit.edu	36	4	23406550	23406550	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	23406550	23406550	C	T	SNP	PPARGC1A	NM_013261	human	genbank	54_36p	-1	reviewed	missense	c.2390	p.R797H	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
PPARGC1A	10891	broad.mit.edu	36	4	23425162	23425162	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	23425162	23425162	C	T	SNP	PPARGC1A	NM_013261	human	genbank	54_36p	-1	reviewed	missense	c.1042	p.G348R	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
PI4K2B	55300	broad.mit.edu	36	4	24867331	24867331	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	24867331	24867331	G	A	SNP	PI4K2B	NM_018323	human	genbank	54_36p	1	validated	silent	c.693	p.K231	1	HMMPfam_PI3_PI4_kinase	"PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_PI3_PI4_kinase"	-	no_errors
PI4K2B	55300	broad.mit.edu	36	4	24871247	24871247	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	24871247	24871247	G	C	SNP	PI4K2B	NM_018323	human	genbank	54_36p	1	validated	missense	c.914	p.R305T	1	HMMPfam_PI3_PI4_kinase	"HMMPfam_PI3_PI4_kinase,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
ZCCHC4	29063	broad.mit.edu	36	4	24944072	24944072	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	24944072	24944072	A	C	SNP	ZCCHC4	NM_024936	human	genbank	54_36p	1	validated	missense	c.499	p.K167Q	1	NULL	"HMMPfam_zf-GRF,PatternScan_N6_MTASE,HMMSmart_ZnF_C2HC"	-	no_errors
ZCCHC4	29063	broad.mit.edu	36	4	24972582	24972582	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	24972582	24972582	G	C	SNP	ZCCHC4	NM_024936	human	genbank	54_36p	1	validated	missense	c.1015	p.D339H	1	NULL	"HMMSmart_ZnF_C2HC,PatternScan_N6_MTASE,HMMPfam_zf-GRF"	-	no_errors
ANAPC4	29945	broad.mit.edu	36	4	25001688	25001688	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	25001688	25001688	G	C	SNP	ANAPC4	NM_013367	human	genbank	54_36p	1	reviewed	missense	c.658	p.V220L	1	NULL	superfamily_WD40 repeat-like	-	no_errors
SEL1L3	23231	broad.mit.edu	36	4	25428885	25428885	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	25428885	25428885	C	T	SNP	KIAA0746	NM_015187	human	genbank	54_36p	-1	validated	missense	c.1537	p.A513T	0.76	superfamily_HCP-like	"superfamily_HCP-like,HMMSmart_SM00671,HMMPfam_Sel1"	-	no_errors
PCDH7	5099	broad.mit.edu	36	4	30334217	30334217	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	30334217	30334217	G	A	SNP	PCDH7	NM_032457	human	genbank	54_36p	1	reviewed	missense	c.1934	p.G645E	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMPfam_Protocadherin"	-	no_errors
ARAP2	116984	broad.mit.edu	36	4	35906815	35906816	+	Missense_Mutation	DNP	CC	CC	AT	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	35906815	35906816	CC	AT	DNP	ARAP2	NM_015230	human	genbank	54_36p	-1	reviewed	missense	c.689_688	p.G230I	0.001:0.001	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ARAP2	116984	broad.mit.edu	36	4	35907369	35907369	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	35907369	35907369	C	T	SNP	ARAP2	NM_015230	human	genbank	54_36p	-1	reviewed	silent	c.135	p.L45	0.36	"HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain"	###############################################################################################################################################################################################################################################################	-	no_errors
TBC1D1	23216	broad.mit.edu	36	4	37692887	37692887	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	37692887	37692887	C	T	SNP	TBC1D1	NM_015173	human	genbank	54_36p	1	validated	silent	c.780	p.F260	0.01	"HMMSmart_SM00462,superfamily_PH domain-like,HMMPfam_PID"	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_LECTIN_LEGUME_BETA,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
KLF3	51274	broad.mit.edu	36	4	38367814	38367814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	38367814	38367814	C	T	SNP	KLF3	NM_016531	human	genbank	54_36p	1	validated	missense	c.614	p.P205L	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
TLR6	10333	broad.mit.edu	36	4	38506153	38506153	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	38506153	38506153	C	G	SNP	TLR6	NM_006068	human	genbank	54_36p	-1	reviewed	missense	c.1337	p.R446T	1	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR"	-	no_errors
FAM114A1	92689	broad.mit.edu	36	4	38583833	38583833	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	38583833	38583833	T	G	SNP	FAM114A1	NM_138389	human	genbank	54_36p	1	predicted	missense	c.613	p.S205A	0.84	HMMPfam_DUF719	HMMPfam_DUF719	-	no_errors
TMEM156	80008	broad.mit.edu	36	4	38671859	38671859	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	38671859	38671859	C	A	SNP	TMEM156	NM_024943	human	genbank	54_36p	-1	provisional	missense	c.513	p.M171I	0	NULL	NULL	-	no_errors
RFC1	5981	broad.mit.edu	36	4	39004595	39004595	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	39004595	39004595	G	C	SNP	RFC1	NM_002913	human	genbank	54_36p	-1	reviewed	missense	c.625	p.L209V	0.99	NULL	"superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1"	-	no_errors
LIAS	11019	broad.mit.edu	36	4	39137146	39137151	+	In_Frame_Del	DEL	GCGGGG	-	GCGGGG	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	GCGGGG	GCGGGG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	39137146	39137151	GCGGGG	-	DEL	LIAS	NM_006859	human	genbank	54_36p	1	reviewed	in_frame_del	c.14_19	p.CGD5in_frame_delY	0.998:0.969:0.894:0.870:0.785:0.761	NULL	"superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM"	"(deletion:cds_exon[39137133,39137177])"	no_errors
LIAS	11019	broad.mit.edu	36	4	39145588	39145588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	39145588	39145588	G	T	SNP	LIAS	NM_006859	human	genbank	54_36p	1	reviewed	missense	c.664	p.A222S	1	"superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM"	"superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM"	-	no_errors
UGDH	7358	broad.mit.edu	36	4	39178193	39178193	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	39178193	39178193	G	A	SNP	UGDH	NM_003359	human	genbank	54_36p	-1	reviewed	missense	c.1450	p.L484F	1	NULL	"HMMPfam_UDPG_MGDP_dh_N,superfamily_NAD(P)-bd,HMMPfam_UDPG_MGDP_dh,superfamily_6DGDH_C_like,superfamily_UDP-Glc/GDP-Man_DH_C,HMMPfam_UDPG_MGDP_dh_C"	-	no_errors
RHOH	399	broad.mit.edu	36	4	39921469	39921469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	39921469	39921469	G	A	SNP	RHOH	NM_004310	human	genbank	54_36p	1	validated	missense	c.68	p.R23H	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	-	no_errors
CHRNA9	55584	broad.mit.edu	36	4	40050753	40050753	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	40050753	40050753	G	A	SNP	CHRNA9	NM_017581	human	genbank	54_36p	1	reviewed	missense	c.899	p.G300D	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
RBM47	54502	broad.mit.edu	36	4	40135541	40135541	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	40135541	40135541	C	A	SNP	RBM47	NM_001098634	human	genbank	54_36p	-1	validated	missense	c.127	p.G43C	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
APBB2	323	broad.mit.edu	36	4	40523994	40523994	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	40523994	40523994	C	T	SNP	APBB2	NM_173075	human	genbank	54_36p	-1	validated	splice_site	c.1579-1	e9-1	1	-	-	-	no_errors
APBB2	323	broad.mit.edu	36	4	40587200	40587200	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	40587200	40587200	G	A	SNP	APBB2	NM_173075	human	genbank	54_36p	-1	validated	silent	c.1401	p.S467	0.11	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID"	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID"	-	no_errors
LIMCH1	22998	broad.mit.edu	36	4	41389128	41389128	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	41389128	41389128	A	C	SNP	LIMCH1	NM_014988	human	genbank	54_36p	1	validated	missense	c.3196	p.N1066H	1	"HMMSmart_SM00132,HMMPfam_LIM"	"HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
PHOX2B	8929	broad.mit.edu	36	4	41444218	41444218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	41444218	41444218	C	G	SNP	PHOX2B	NM_003924	human	genbank	54_36p	-1	reviewed	missense	c.334	p.E112Q	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
GABRA4	2557	broad.mit.edu	36	4	46673881	46673881	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	46673881	46673881	C	G	SNP	GABRA4	NM_000809	human	genbank	54_36p	-1	reviewed	silent	c.531	p.V177	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
ATP10D	57205	broad.mit.edu	36	4	47232703	47232703	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	47232703	47232703	A	C	SNP	ATP10D	NM_020453	human	genbank	54_36p	1	validated	missense	c.911	p.N304T	1	HMMPfam_E1-E2_ATPase	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3"	-	no_errors
ATP10D	57205	broad.mit.edu	36	4	47254715	47254715	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	47254715	47254715	A	T	SNP	ATP10D	NM_020453	human	genbank	54_36p	1	validated	missense	c.2102	p.D701V	0	superfamily_HAD-like	"HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
CNGA1	1259	broad.mit.edu	36	4	47633341	47633341	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	47633341	47633341	G	A	SNP	CNGA1	NM_000087	human	genbank	54_36p	-1	reviewed	nonsense	c.1927	p.R643*	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
SLC10A4	201780	broad.mit.edu	36	4	48180902	48180903	+	Missense_Mutation	DNP	GG	GG	AC	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	48180902	48180903	GG	AC	DNP	SLC10A4	NM_152679	human	genbank	54_36p	1	validated	missense	c.567_568	p.V190L	1.000:1.000	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
FRYL	285527	broad.mit.edu	36	4	48254319	48254319	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	48254319	48254319	C	G	SNP	FRYL	NM_015030	human	genbank	54_36p	-1	validated	missense	c.4033	p.V1345L	1	NULL	superfamily_ARM repeat	-	no_errors
CWH43	80157	broad.mit.edu	36	4	48700604	48700604	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	48700604	48700604	C	A	SNP	FLJ21511	NM_025087	human	genbank	54_36p	1	validated	missense	c.898	p.Q300K	0.39	NULL	NULL	-	no_errors
DCUN1D4	23142	broad.mit.edu	36	4	52435203	52435203	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	52435203	52435203	G	C	SNP	DCUN1D4	NM_001040402	human	genbank	54_36p	1	validated	missense	c.146	p.R49P	1	NULL	HMMPfam_DUF298	-	no_errors
DCUN1D4	23142	broad.mit.edu	36	4	52438706	52438706	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	52438706	52438706	C	T	SNP	DCUN1D4	NM_001040402	human	genbank	54_36p	1	validated	missense	c.272	p.S91L	1	NULL	HMMPfam_DUF298	-	no_errors
LRRC66	339977	broad.mit.edu	36	4	52555527	52555527	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	52555527	52555527	G	C	SNP	LRRC66	NM_001024611	human	genbank	54_36p	-1	provisional	silent	c.2418	p.P806	0.01	NULL	"superfamily_SSF52058,HMMPfam_LRR_1"	-	no_errors
SPATA18	132671	broad.mit.edu	36	4	52633059	52633059	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	52633059	52633059	G	A	SNP	SPATA18	NM_145263	human	genbank	54_36p	1	provisional	silent	c.738	p.E246	0.97	NULL	NULL	-	no_errors
USP46	64854	broad.mit.edu	36	4	53171479	53171479	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	53171479	53171479	A	G	SNP	USP46	NM_022832	human	genbank	54_36p	-1	validated	missense	c.623	p.I208T	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
RASL11B	65997	broad.mit.edu	36	4	53426614	53426614	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	53426614	53426614	C	T	SNP	RASL11B	NM_023940	human	genbank	54_36p	1	provisional	missense	c.632	p.P211L	0.18	NULL	"superfamily_SSF52540,HMMPfam_Miro"	-	no_errors
LNX1	84708	broad.mit.edu	36	4	54042704	54042704	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	54042704	54042704	G	A	SNP	LNX1	NM_032622	human	genbank	54_36p	-1	reviewed	silent	c.1137	p.A379	0.31	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
LNX1	84708	broad.mit.edu	36	4	54118881	54118881	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	54118881	54118881	C	T	SNP	LNX1	NM_032622	human	genbank	54_36p	-1	reviewed	silent	c.9	p.A3	1	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ"	-	no_errors
PDGFRA	5156	broad.mit.edu	36	4	54824777	54824777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	54824777	54824777	G	A	SNP	PDGFRA	NM_006206	human	genbank	54_36p	1	reviewed	missense	c.554	p.G185E	0.92	"superfamily_Immunoglobulin,HMMSmart_SM00409"	###############################################################################################################################################################################################################################################################	-	no_errors
PDGFRA	5156	broad.mit.edu	36	4	54833372	54833372	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	54833372	54833372	A	G	SNP	PDGFRA	NM_006206	human	genbank	54_36p	1	reviewed	missense	c.1292	p.Q431R	1	superfamily_Immunoglobulin	###############################################################################################################################################################################################################################################################	-	no_errors
PDGFRA	5156	broad.mit.edu	36	4	54839404	54839404	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	54839404	54839404	C	A	SNP	PDGFRA	NM_006206	human	genbank	54_36p	1	reviewed	silent	c.2121	p.I707	0.98	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
KIT	3815	broad.mit.edu	36	4	55268073	55268073	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	55268073	55268073	C	T	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	silent	c.978	p.N326	0.15	"HMMSmart_IG,superfamily_SSF48726"	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726"	-	no_errors
KIT	3815	broad.mit.edu	36	4	55299416	55299416	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	55299416	55299416	G	A	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	missense	c.2867	p.R956Q	1	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726"	-	no_errors
KIT	3815	broad.mit.edu	36	4	55299419	55299419	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	55299419	55299419	T	C	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	missense	c.2870	p.I957T	1	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726"	-	no_errors
KIT	3815	broad.mit.edu	36	4	55299430	55299430	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	55299430	55299430	G	A	SNP	KIT	NM_000222	human	genbank	54_36p	1	reviewed	missense	c.2881	p.G961S	0.99	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726"	-	no_errors
NMU	10874	broad.mit.edu	36	4	56191372	56191372	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	56191372	56191372	A	T	SNP	NMU	NM_006681	human	genbank	54_36p	-1	validated	nonsense	c.125	p.L42*	0.32	NULL	"HMMPfam_NMU,HMMSmart_NMU,PatternScan_NMU"	-	no_errors
EXOC1	55763	broad.mit.edu	36	4	56421433	56421433	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	56421433	56421433	T	C	SNP	EXOC1	NM_001024924	human	genbank	54_36p	1	reviewed	missense	c.224	p.L75P	1	NULL	HMMPfam_Sec3	-	no_errors
CEP135	9662	broad.mit.edu	36	4	56560533	56560533	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	56560533	56560533	A	G	SNP	CEP135	NM_025009	human	genbank	54_36p	1	validated	missense	c.2245	p.K749E	1	NULL	superfamily_Prefoldin	-	no_errors
KIAA1211	57482	broad.mit.edu	36	4	56876077	56876077	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	56876077	56876077	C	G	SNP	KIAA1211	NM_020722	human	genbank	54_36p	1	validated	missense	c.1652	p.P551R	1	NULL	NULL	-	no_errors
REST	5978	broad.mit.edu	36	4	57472321	57472324	+	Frame_Shift_Del	DEL	ACAT	-	-	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	ACAT	ACAT	-	-	ACAT	ACAT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	57472321	57472324	ACAT	-	DEL	REST	NM_005612	human	genbank	54_36p	1	reviewed	frame_shift_del	c.760_763	p.Y255fs	0.994:0.996:0.921:1.000	HMMSmart_ZnF_C2H2	"HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[57471562,57472459])"	no_errors
EPHA5	2044	broad.mit.edu	36	4	65899765	65899765	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	65899765	65899765	T	C	SNP	EPHA5	NM_004439	human	genbank	54_36p	-1	reviewed	silent	c.2445	p.K815	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA5	2044	broad.mit.edu	36	4	66150299	66150299	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	66150299	66150299	C	T	SNP	EPHA5	NM_004439	human	genbank	54_36p	-1	reviewed	missense	c.565	p.G189S	1	"HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
GNRHR	2798	broad.mit.edu	36	4	68302523	68302523	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	68302523	68302523	A	G	SNP	GNRHR	NM_000406	human	genbank	54_36p	-1	reviewed	silent	c.126	p.T42	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
YTHDC1	91746	broad.mit.edu	36	4	68867041	68867041	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	68867041	68867041	G	A	SNP	YTHDC1	NM_001031732	human	genbank	54_36p	-1	validated	nonsense	c.1723	p.R575*	1	NULL	HMMPfam_YTH	-	no_errors
UGT2B17	7367	broad.mit.edu	36	4	69116706	69116706	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	69116706	69116706	G	A	SNP	UGT2B17	NM_001077	human	genbank	54_36p	-1	provisional	missense	c.92	p.T31I	0.13	"superfamily_SSF53756,HMMPfam_UDPGT"	"superfamily_SSF53756,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT2B10	7365	broad.mit.edu	36	4	69716510	69716510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	69716510	69716510	C	A	SNP	UGT2B10	NM_001075	human	genbank	54_36p	1	validated	missense	c.184	p.L62I	0	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
UGT2B10	7365	broad.mit.edu	36	4	69716716	69716716	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	69716716	69716716	T	C	SNP	UGT2B10	NM_001075	human	genbank	54_36p	1	validated	silent	c.390	p.V130	0	"HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase"	"HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase"	-	no_errors
UGT2B7	7364	broad.mit.edu	36	4	70008630	70008630	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	70008630	70008630	G	C	SNP	UGT2B7	NM_001074	human	genbank	54_36p	1	validated	splice_site	c.1310+1	e5+1	1	-	-	-	no_errors
UGT2A1	10941	broad.mit.edu	36	4	70547567	70547567	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	70547567	70547567	C	A	SNP	UGT2A1	NM_006798	human	genbank	54_36p	-1	validated	missense	c.385	p.V129F	1	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
SULT1E1	6783	broad.mit.edu	36	4	70748004	70748004	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	70748004	70748004	C	T	SNP	SULT1E1	NM_005420	human	genbank	54_36p	-1	reviewed	splice_site	c.591+1	e5+1	0.99	-	-	-	no_errors
ODAM	54959	broad.mit.edu	36	4	71097019	71097019	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	71097019	71097019	T	A	SNP	ODAM	NM_017855	human	genbank	54_36p	1	validated	missense	c.73	p.S25T	0.8	NULL	NULL	-	no_errors
ODAM	54959	broad.mit.edu	36	4	71098918	71098918	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	71098918	71098918	C	G	SNP	ODAM	NM_017855	human	genbank	54_36p	1	validated	missense	c.409	p.Q137E	1	NULL	NULL	-	no_errors
CSN3	1448	broad.mit.edu	36	4	71149370	71149370	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	71149370	71149370	C	G	SNP	CSN3	NM_005212	human	genbank	54_36p	1	validated	missense	c.154	p.P52A	0	HMMPfam_Casein_kappa	HMMPfam_Casein_kappa	-	no_errors
C4orf35	85438	broad.mit.edu	36	4	71235583	71235583	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	71235583	71235583	G	C	SNP	C4orf35	NM_033122	human	genbank	54_36p	1	validated	missense	c.238	p.D80H	0.11	NULL	NULL	-	no_errors
C4orf35	85438	broad.mit.edu	36	4	71235661	71235661	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	71235661	71235661	A	G	SNP	C4orf35	NM_033122	human	genbank	54_36p	1	validated	missense	c.316	p.I106V	0	NULL	NULL	-	no_errors
SMR3A	26952	broad.mit.edu	36	4	71262466	71262466	+	Silent	SNP	G	G	C	rs62322478	by-1000genomes	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	71262466	71262466	G	C	SNP	SMR3A	NM_012390	human	genbank	54_36p	1	validated	silent	c.45	p.A15	0.05	NULL	NULL	-	no_errors
MUC7	4589	broad.mit.edu	36	4	71381235	71381235	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	71381235	71381235	C	G	SNP	MUC7	NM_152291	human	genbank	54_36p	1	reviewed	missense	c.185	p.S62C	0	NULL	NULL	-	no_errors
MUC7	100129410	broad.mit.edu	36	4	71381940	71381940	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	71381940	71381940	C	A	SNP	LOC100129410	XM_001714842	human	genbank	54_36p	-1	model	nonsense	c.226	p.E76*	0	NULL	NULL	-	no_errors
AMBN	258	broad.mit.edu	36	4	71497332	71497332	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	71497332	71497332	G	A	SNP	AMBN	NM_016519	human	genbank	54_36p	1	reviewed	missense	c.112	p.G38S	0.94	"HMMPfam_Amelin,HMMSmart_SM00817"	"HMMPfam_Amelin,HMMSmart_SM00817"	-	no_errors
AMBN	258	broad.mit.edu	36	4	71506678	71506678	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	71506678	71506678	C	T	SNP	AMBN	NM_016519	human	genbank	54_36p	1	reviewed	missense	c.986	p.P329L	0	"HMMPfam_Amelin,HMMSmart_SM00817"	"HMMPfam_Amelin,HMMSmart_SM00817"	-	no_errors
ENAM	10117	broad.mit.edu	36	4	71727058	71727058	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	71727058	71727058	A	G	SNP	ENAM	NM_031889	human	genbank	54_36p	1	validated	missense	c.1051	p.R351G	0.67	NULL	NULL	-	no_errors
UTP3	57050	broad.mit.edu	36	4	71773283	71773295	+	Frame_Shift_Del	DEL	GGAGCAGCTAAGT	-	GGAGCAGCTAAGT	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	GGAGCAGCTAAGT	GGAGCAGCTAAGT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	71773283	71773295	GGAGCAGCTAAGT	-	DEL	UTP3	NM_020368	human	genbank	54_36p	1	validated	frame_shift_del	c.25_37	p.A10fs	0.970:0.966:0.962:0.951:0.907:0.876:0.848:0.816:0.568:0.557:0.551:0.548:0.542	NULL	"HMMPfam_Sas10_Utp3,HMMPfam_Sas10_Utp3_C"	"(deletion:cds_exon[71773259,71774698])"	no_errors
NPFFR2	10886	broad.mit.edu	36	4	73213311	73213311	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	73213311	73213311	A	G	SNP	NPFFR2	NM_004885	human	genbank	54_36p	1	reviewed	missense	c.445	p.I149V	0.35	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ANKRD17	26057	broad.mit.edu	36	4	74238557	74238557	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	74238557	74238557	C	T	SNP	ANKRD17	NM_032217	human	genbank	54_36p	-1	reviewed	missense	c.1138	p.V380M	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_MutS_V,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	-	no_errors
AFM	173	broad.mit.edu	36	4	74570533	74570533	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	74570533	74570533	A	G	SNP	AFM	NM_001133	human	genbank	54_36p	1	reviewed	missense	c.361	p.R121G	0.16	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like"	"HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like,PatternScan_ALBUMIN"	-	no_errors
USO1	8615	broad.mit.edu	36	4	76911071	76911071	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	76911071	76911071	G	T	SNP	USO1	NM_003715	human	genbank	54_36p	1	reviewed	missense	c.469	p.V157L	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Uso1_p115_head,HMMPfam_Uso1_p115_C"	-	no_errors
PPEF2	5470	broad.mit.edu	36	4	77016653	77016653	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	77016653	77016653	G	T	SNP	PPEF2	NM_006239	human	genbank	54_36p	-1	reviewed	nonsense	c.1131	p.C377*	0.85	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos"	"HMMPfam_IQ,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE,HMMSmart_SM00054,superfamily_EF-hand,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
SDAD1	55153	broad.mit.edu	36	4	77111541	77111541	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	77111541	77111541	A	G	SNP	SDAD1	NM_018115	human	genbank	54_36p	-1	validated	missense	c.806	p.V269A	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_NUC130_3NT,HMMPfam_SDA1"	-	no_errors
CXCL9	4283	broad.mit.edu	36	4	77143841	77143841	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	77143841	77143841	T	A	SNP	CXCL9	NM_002416	human	genbank	54_36p	-1	reviewed	missense	c.312	p.K104N	0.02	NULL	"HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CXC"	-	no_errors
CCDC158	339965	broad.mit.edu	36	4	77495492	77495507	+	Splice_Site	DEL	GCAACCCACCTTATTT	-	GCAACCCACCTTATTT	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	GCAACCCACCTTATTT	GCAACCCACCTTATTT	-	-	GCAACCCACCTTATTT	GCAACCCACCTTATTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	77495492	77495507	GCAACCCACCTTATTT	-	DEL	FLJ25770	NM_001042784	human	genbank	54_36p	-1	validated	splice_site_del	c.2286+8_2286+1	e14-1	0.058:0.057:0.074:0.520:0.607:0.660:0.699:0.971:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	"(deletion:intron[77493459,77495500], cds_exon[77495501,77495613])"	no_errors
CCDC158	339965	broad.mit.edu	36	4	77497599	77497599	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	77497599	77497599	C	G	SNP	FLJ25770	NM_001042784	human	genbank	54_36p	-1	validated	missense	c.2125	p.E709Q	0.96	NULL	NULL	-	no_errors
CCNI	10983	broad.mit.edu	36	4	78195418	78195418	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	78195418	78195418	G	C	SNP	CCNI	NM_006835	human	genbank	54_36p	-1	reviewed	missense	c.599	p.S200C	1	NULL	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385"	-	no_errors
FRAS1	80144	broad.mit.edu	36	4	79606527	79606527	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	79606527	79606527	G	A	SNP	FRAS1	ENST00000380674	human	ensembl	54_36p	1	known	missense	c.7174	p.G2392S	1	NULL	"HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta"	-	no_errors
FRAS1	80144	broad.mit.edu	36	4	79637082	79637083	+	Nonsense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	79637082	79637083	GG	TT	DNP	FRAS1	NM_025074	human	genbank	54_36p	1	reviewed	nonsense	c.9054_9055	p.EL3019*	1.000:1.000	NULL	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00181,HMMSmart_SM00261,HMMSmart_SM00215,superfamily_Growth factor receptor domain"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NAA11	84779	broad.mit.edu	36	4	80465466	80465466	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	80465466	80465466	G	A	SNP	ARD1B	NM_032693	human	genbank	54_36p	-1	validated	missense	c.590	p.P197L	0	NULL	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1"	-	no_errors
GK2	2712	broad.mit.edu	36	4	80547531	80547531	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	80547531	80547531	C	A	SNP	GK2	NM_033214	human	genbank	54_36p	-1	validated	missense	c.848	p.C283F	1	"superfamily_SSF53067,HMMPfam_FGGY_C"	"superfamily_SSF53067,HMMPfam_FGGY_N,PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2"	-	no_errors
BMP3	651	broad.mit.edu	36	4	82186163	82186163	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	82186163	82186163	C	T	SNP	BMP3	NM_001201	human	genbank	54_36p	1	reviewed	silent	c.564	p.A188	0.62	NULL	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
BMP3	651	broad.mit.edu	36	4	82186177	82186177	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	82186177	82186177	A	G	SNP	BMP3	NM_001201	human	genbank	54_36p	1	reviewed	missense	c.578	p.D193G	1	NULL	"HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501"	-	no_errors
BMP3	651	broad.mit.edu	36	4	82186277	82186277	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	82186277	82186277	C	T	SNP	BMP3	NM_001201	human	genbank	54_36p	1	reviewed	silent	c.678	p.R226	0.02	NULL	"HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501"	-	no_errors
HNRPDL	9987	broad.mit.edu	36	4	83568293	83568293	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	83568293	83568293	A	C	SNP	HNRPDL	NM_031372	human	genbank	54_36p	-1	reviewed	missense	c.676	p.L226V	1	NULL	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1"	-	no_errors
SEC31A	22872	broad.mit.edu	36	4	83989074	83989074	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	83989074	83989074	C	T	SNP	SEC31A	NM_001077207	human	genbank	54_36p	-1	reviewed	silent	c.2409	p.P803	0.33	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
THAP9	79725	broad.mit.edu	36	4	84057373	84057373	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	84057373	84057373	T	C	SNP	THAP9	NM_024672	human	genbank	54_36p	1	validated	silent	c.984	p.G328	1	NULL	"HMMPfam_THAP,HMMSmart_DM3"	-	no_errors
THAP9	79725	broad.mit.edu	36	4	84058716	84058716	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	84058716	84058716	A	T	SNP	THAP9	NM_024672	human	genbank	54_36p	1	validated	missense	c.2327	p.E776V	1	NULL	"HMMPfam_THAP,HMMSmart_DM3"	-	no_errors
PLAC8	51316	broad.mit.edu	36	4	84245198	84245198	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	84245198	84245198	C	A	SNP	PLAC8	NM_016619	human	genbank	54_36p	-1	validated	splice_site	c.119-1	e2-1	1	-	-	-	no_errors
NKX6-1	4825	broad.mit.edu	36	4	85633579	85633579	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	85633579	85633579	C	A	SNP	NKX6-1	NM_006168	human	genbank	54_36p	-1	validated	missense	c.991	p.D331Y	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
CDS1	1040	broad.mit.edu	36	4	85774097	85774097	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	85774097	85774097	C	G	SNP	CDS1	NM_001263	human	genbank	54_36p	1	reviewed	missense	c.703	p.L235V	1	HMMPfam_CTP_transf_1	"HMMPfam_CTP_transf_1,PatternScan_CDS"	-	no_errors
WDFY3	23001	broad.mit.edu	36	4	85842635	85842635	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	85842635	85842635	C	A	SNP	WDFY3	NM_014991	human	genbank	54_36p	-1	reviewed	missense	c.8491	p.A2831S	1	"superfamily_BEACH domain,HMMPfam_Beach"	###############################################################################################################################################################################################################################################################	-	no_errors
WDFY3	23001	broad.mit.edu	36	4	85961620	85961620	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	85961620	85961620	T	G	SNP	WDFY3	NM_014991	human	genbank	54_36p	-1	reviewed	missense	c.1232	p.Y411S	1	superfamily_ARM repeat	###############################################################################################################################################################################################################################################################	-	no_errors
PTPN13	5783	broad.mit.edu	36	4	87950112	87950112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	87950112	87950112	C	A	SNP	PTPN13	NM_080685	human	genbank	54_36p	1	reviewed	missense	c.7265	p.T2422N	1	"superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
HSD17B11	51170	broad.mit.edu	36	4	88480763	88480763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	88480763	88480763	G	A	SNP	HSD17B11	NM_016245	human	genbank	54_36p	-1	validated	missense	c.715	p.P239S	1	superfamily_NAD(P)-binding Rossmann-fold domains	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	-	no_errors
HSD17B11	51170	broad.mit.edu	36	4	88497455	88497455	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	88497455	88497455	C	A	SNP	HSD17B11	NM_016245	human	genbank	54_36p	-1	validated	missense	c.695	p.S232I	1	superfamily_NAD(P)-binding Rossmann-fold domains	"HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains"	-	no_errors
DSPP	1834	broad.mit.edu	36	4	88755481	88755482	+	In_Frame_Ins	INS	-	AGTAGTGAC	-	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	88755481	88755482	-	AGTAGTGAC	INS	DSPP	NM_014208	human	genbank	54_36p	1	reviewed	in_frame_ins	c.2643_2644	p.885in_frame_insSDS	0.979:0.981	NULL	NULL	-	no_errors
DMP1	1758	broad.mit.edu	36	4	88802290	88802290	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	88802290	88802290	C	T	SNP	DMP1	NM_004407	human	genbank	54_36p	1	reviewed	silent	c.336	p.D112	1	HMMPfam_DMP1	HMMPfam_DMP1	-	no_errors
MEPE	56955	broad.mit.edu	36	4	88986112	88986112	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	88986112	88986112	C	A	SNP	MEPE	NM_020203	human	genbank	54_36p	1	validated	missense	c.1068	p.N356K	0.95	NULL	HMMPfam_Osteoregulin	-	no_errors
HERC6	55008	broad.mit.edu	36	4	89533744	89533744	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	89533744	89533744	C	T	SNP	HERC6	ENST00000264346	human	ensembl	54_36p	1	known	missense	c.743	p.A248V	1	superfamily_RCC1/BLIP-II	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HERC5	51191	broad.mit.edu	36	4	89634439	89634439	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	89634439	89634439	T	G	SNP	HERC5	NM_016323	human	genbank	54_36p	1	reviewed	missense	c.2378	p.F793C	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HERC5	51191	broad.mit.edu	36	4	89644476	89644476	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	89644476	89644476	C	T	SNP	HERC5	NM_016323	human	genbank	54_36p	1	reviewed	missense	c.2653	p.R885W	0.52	"HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain"	"HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,superfamily_RCC1/BLIP-II"	-	no_errors
GPRIN3	285513	broad.mit.edu	36	4	90389105	90389105	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	90389105	90389105	T	C	SNP	GPRIN3	NM_198281	human	genbank	54_36p	-1	validated	missense	c.1180	p.I394V	0.97	NULL	NULL	-	no_errors
GPRIN3	285513	broad.mit.edu	36	4	90389357	90389357	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	90389357	90389357	T	G	SNP	GPRIN3	NM_198281	human	genbank	54_36p	-1	validated	missense	c.928	p.K310Q	0	NULL	NULL	-	no_errors
SNCA	6622	broad.mit.edu	36	4	90975785	90975785	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	90975785	90975785	A	T	SNP	SNCA	NM_000345	human	genbank	54_36p	-1	reviewed	silent	c.57	p.A19	0.98	HMMPfam_Synuclein	HMMPfam_Synuclein	-	no_errors
MMRN1	22915	broad.mit.edu	36	4	91035335	91035335	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	91035335	91035335	G	T	SNP	MMRN1	NM_007351	human	genbank	54_36p	1	reviewed	nonsense	c.190	p.E64*	0.02	NULL	"HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q"	-	no_errors
MMRN1	22915	broad.mit.edu	36	4	91035647	91035647	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	91035647	91035647	G	T	SNP	MMRN1	NM_007351	human	genbank	54_36p	1	reviewed	missense	c.502	p.V168F	0.01	NULL	"PatternScan_ASX_HYDROXYL,HMMPfam_C1q,HMMSmart_SM00110,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_TNF-like,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin"	-	no_errors
MMRN1	22915	broad.mit.edu	36	4	91093337	91093337	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	91093337	91093337	A	G	SNP	MMRN1	NM_007351	human	genbank	54_36p	1	reviewed	silent	c.3432	p.V1144	0.98	"HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like"	"PatternScan_ASX_HYDROXYL,HMMPfam_C1q,HMMSmart_SM00110,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_TNF-like,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin"	-	no_errors
GRID2	2895	broad.mit.edu	36	4	93730328	93730328	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	93730328	93730328	A	C	SNP	GRID2	NM_001510	human	genbank	54_36p	1	validated	missense	c.112	p.K38Q	1	superfamily_SSF53822	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRID2	2895	broad.mit.edu	36	4	94357013	94357013	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	94357013	94357013	G	T	SNP	GRID2	NM_001510	human	genbank	54_36p	1	validated	silent	c.891	p.R297	1	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850"	-	no_errors
PDLIM5	10611	broad.mit.edu	36	4	95797707	95797707	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	95797707	95797707	C	A	SNP	PDLIM5	NM_006457	human	genbank	54_36p	1	reviewed	missense	c.1571	p.P524H	1	"HMMSmart_SM00132,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,HMMPfam_LIM,PatternScan_LIM_DOMAIN_1"	-	no_errors
UNC5C	8633	broad.mit.edu	36	4	96325294	96325295	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	-	-	T	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	96325294	96325295	-	T	INS	UNC5C	NM_003728	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2213_2212	p.T738fs	1.000:1.000	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	-	no_errors
UNC5C	8633	broad.mit.edu	36	4	96418498	96418498	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	96418498	96418498	C	T	SNP	UNC5C	NM_003728	human	genbank	54_36p	-1	reviewed	missense	c.529	p.E177K	1	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	-	no_errors
RAP1GDS1	5910	broad.mit.edu	36	4	99544754	99544754	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	99544754	99544754	T	C	SNP	RAP1GDS1	NM_001100426	human	genbank	54_36p	1	validated	silent	c.744	p.V248	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
ADH5	128	broad.mit.edu	36	4	100212611	100212611	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	100212611	100212611	G	A	SNP	ADH5	NM_000671	human	genbank	54_36p	-1	reviewed	nonsense	c.1105	p.R369*	1	superfamily_GroES-like	"superfamily_GroES-like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N"	-	no_errors
ADH1B	125	broad.mit.edu	36	4	100454248	100454248	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	100454248	100454248	G	A	SNP	ADH1B	NM_000668	human	genbank	54_36p	-1	reviewed	missense	c.581	p.S194F	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N"	"superfamily_GroES-like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N"	-	no_errors
RG9MTD2	93587	broad.mit.edu	36	4	100689519	100689519	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	100689519	100689519	C	G	SNP	RG9MTD2	NM_152292	human	genbank	54_36p	-1	validated	missense	c.769	p.E257Q	1	HMMPfam_tRNA_m1G_MT	HMMPfam_tRNA_m1G_MT	-	no_errors
MTTP	4547	broad.mit.edu	36	4	100746944	100746944	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	100746944	100746944	A	G	SNP	MTTP	NM_000253	human	genbank	54_36p	1	reviewed	missense	c.1361	p.K454R	1	"HMMPfam_Vitellogenin_N,HMMSmart_LPD_N,superfamily_LV_superhelical"	"superfamily_Lipid_transp_b-sht_shell,HMMPfam_Vitellogenin_N,HMMSmart_LPD_N,superfamily_LV_superhelical"	-	no_errors
DDIT4L	115265	broad.mit.edu	36	4	101327861	101327861	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	101327861	101327861	G	A	SNP	DDIT4L	NM_145244	human	genbank	54_36p	-1	provisional	missense	c.578	p.S193F	1	NULL	HMMPfam_RTP801_C	-	no_errors
PPP3CA	5530	broad.mit.edu	36	4	102223386	102223386	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	102223386	102223386	G	C	SNP	PPP3CA	NM_000944	human	genbank	54_36p	-1	validated	silent	c.840	p.A280	1	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos"	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE"	-	no_errors
BANK1	55024	broad.mit.edu	36	4	102969992	102969992	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	102969992	102969992	T	G	SNP	BANK1	NM_017935	human	genbank	54_36p	1	validated	missense	c.75	p.N25K	0.77	NULL	superfamily_Ankyrin repeat	-	no_errors
NHEDC1	150159	broad.mit.edu	36	4	104089882	104089882	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	104089882	104089882	A	G	SNP	NHEDC1	NM_139173	human	genbank	54_36p	-1	reviewed	silent	c.363	p.P121	1	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
TACR3	6870	broad.mit.edu	36	4	104730348	104730348	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	104730348	104730348	A	T	SNP	TACR3	NM_001059	human	genbank	54_36p	-1	reviewed	silent	c.1338	p.S446	0.96	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TACR3	6870	broad.mit.edu	36	4	104730582	104730582	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	104730582	104730582	C	G	SNP	TACR3	NM_001059	human	genbank	54_36p	-1	reviewed	missense	c.1104	p.K368N	1	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
CXXC4	80319	broad.mit.edu	36	4	105631754	105631754	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	105631754	105631754	A	G	SNP	CXXC4	NM_025212	human	genbank	54_36p	-1	provisional	missense	c.148	p.C50R	1	NULL	HMMPfam_zf-CXXC	-	no_errors
PPA2	27068	broad.mit.edu	36	4	106594233	106594233	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	106594233	106594233	T	C	SNP	PPA2	NM_176869	human	genbank	54_36p	-1	reviewed	missense	c.238	p.M80V	0.95	superfamily_Inorganic pyrophosphatase	"superfamily_Inorganic pyrophosphatase,HMMPfam_Pyrophosphatase,PatternScan_PPASE"	-	no_errors
ARHGEF38	54848	broad.mit.edu	36	4	106729943	106729944	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	106729943	106729944	GA	TT	DNP	FLJ20184	NM_017700	human	genbank	54_36p	1	predicted	missense	c.286_287	p.E96L	0.777:0.773	superfamily_DH-domain	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF"	-	no_errors
GSTCD	79807	broad.mit.edu	36	4	106975103	106975127	+	Frame_Shift_Del	DEL	GTGATTGAGCACTGTATCAAAACAC	-	GTGATTGAGCACTGTATCAAAACAC	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	GTGATTGAGCACTGTATCAAAACAC	GTGATTGAGCACTGTATCAAAACAC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	106975103	106975127	GTGATTGAGCACTGTATCAAAACAC	-	DEL	GSTCD	NM_001031720	human	genbank	54_36p	1	validated	frame_shift_del	c.1567_1591	p.V523fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:0.996:0.879:0.847:0.556:0.099:0.752	NULL	"superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"(deletion:cds_exon[106975067,106975200])"	no_errors
TBCK	93627	broad.mit.edu	36	4	107353390	107353390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	107353390	107353390	C	G	SNP	TBCKL	NM_033115	human	genbank	54_36p	-1	provisional	missense	c.1637	p.S546T	1	"HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC"	"superfamily_Kinase_like,HMMPfam_Pkinase,superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC,superfamily_Rhodanese-like,HMMSmart_RHOD,HMMPfam_Rhodanese"	-	no_errors
DKK2	27123	broad.mit.edu	36	4	108066444	108066444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	108066444	108066444	G	C	SNP	DKK2	NM_014421	human	genbank	54_36p	-1	reviewed	missense	c.334	p.R112G	0.7	HMMPfam_Dickkopf_N	HMMPfam_Dickkopf_N	-	no_errors
HADH	3033	broad.mit.edu	36	4	109174914	109174914	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	109174914	109174914	G	A	SNP	HADH	NM_005327	human	genbank	54_36p	1	reviewed	silent	c.897	p.E299	1	"superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH"	-	no_errors
AGXT2L1	64850	broad.mit.edu	36	4	109888619	109888619	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	109888619	109888619	C	A	SNP	AGXT2L1	NM_031279	human	genbank	54_36p	-1	provisional	missense	c.1073	p.G358V	1	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_3"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3"	-	no_errors
COL25A1	84570	broad.mit.edu	36	4	110000291	110000291	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	110000291	110000291	G	C	SNP	COL25A1	NM_198721	human	genbank	54_36p	-1	validated	missense	c.1290	p.D430E	1	NULL	HMMPfam_Collagen	-	no_errors
COL25A1	84570	broad.mit.edu	36	4	110003986	110003986	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	110003986	110003986	G	A	SNP	COL25A1	NM_198721	human	genbank	54_36p	-1	validated	missense	c.1090	p.R364W	1	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
SEC24B	10427	broad.mit.edu	36	4	110646977	110646977	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	110646977	110646977	G	A	SNP	SEC24B	NM_006323	human	genbank	54_36p	1	reviewed	silent	c.1533	p.L511	0.86	superfamily_beta-sandwich domain of Sec23/24	###############################################################################################################################################################################################################################################################	-	no_errors
PLA2G12A	81579	broad.mit.edu	36	4	110859322	110859322	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	110859322	110859322	G	A	SNP	PLA2G12A	NM_030821	human	genbank	54_36p	-1	validated	missense	c.251	p.P84L	1	"HMMPfam_PLA2G12,superfamily_Phospholipase A2 PLA2"	"HMMPfam_PLA2G12,superfamily_Phospholipase A2 PLA2,PatternScan_PA2_HIS"	-	no_errors
ALPK1	80216	broad.mit.edu	36	4	113572444	113572444	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	113572444	113572444	G	A	SNP	ALPK1	NM_001102406	human	genbank	54_36p	1	validated	silent	c.2292	p.E764	0	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase"	-	no_errors
ALPK1	80216	broad.mit.edu	36	4	113572868	113572868	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	4	113572868	113572868	A	T	SNP	ALPK1	NM_001102406	human	genbank	54_36p	1	validated	missense	c.2716	p.T906S	0.1	NULL	"HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)"	-	no_errors
C4orf21	55345	broad.mit.edu	36	4	113758564	113758564	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	113758564	113758564	G	C	SNP	C4orf21	NM_018392	human	genbank	54_36p	-1	predicted	missense	c.2083	p.Q695E	0	NULL	HMMPfam_DUF2439	-	no_errors
LARP7	51574	broad.mit.edu	36	4	113788063	113788063	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	113788063	113788063	T	A	SNP	LARP7	NM_015454	human	genbank	54_36p	1	validated	missense	c.906	p.D302E	0	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715,HMMPfam_La,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_RRM_3"	-	no_errors
LARP7	51574	broad.mit.edu	36	4	113790234	113790234	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	113790234	113790234	T	G	SNP	LARP7	NM_015454	human	genbank	54_36p	1	validated	missense	c.1237	p.S413A	0.1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_La,HMMSmart_SM00715,HMMPfam_RRM_3,superfamily_Winged helix DNA-binding domain,superfamily_RNA-binding domain RBD"	-	no_errors
LARP7	51574	broad.mit.edu	36	4	113790255	113790255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	113790255	113790255	G	A	SNP	LARP7	NM_015454	human	genbank	54_36p	1	validated	missense	c.1258	p.G420R	0	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_La,HMMSmart_SM00715,HMMPfam_RRM_3,superfamily_Winged helix DNA-binding domain,superfamily_RNA-binding domain RBD"	-	no_errors
LARP7	51574	broad.mit.edu	36	4	113791076	113791076	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	113791076	113791076	G	A	SNP	LARP7	NM_015454	human	genbank	54_36p	1	validated	silent	c.1305	p.R435	0.01	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_La,HMMSmart_SM00715,HMMPfam_RRM_3,superfamily_Winged helix DNA-binding domain,superfamily_RNA-binding domain RBD"	-	no_errors
ANK2	287	broad.mit.edu	36	4	114381120	114381120	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	114381120	114381120	C	T	SNP	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	missense	c.724	p.H242Y	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
ANK2	287	broad.mit.edu	36	4	114415178	114415178	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	114415178	114415178	T	G	SNP	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	missense	c.1607	p.I536S	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
ANK2	287	broad.mit.edu	36	4	114428235	114428235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	114428235	114428235	C	T	SNP	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	missense	c.2105	p.A702V	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
ANK2	287	broad.mit.edu	36	4	114494868	114494868	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	114494868	114494868	C	T	SNP	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	missense	c.5645	p.S1882L	0.99	NULL	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
ANK2	287	broad.mit.edu	36	4	114513912	114513912	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	114513912	114513912	G	A	SNP	ANK2	NM_001148	human	genbank	54_36p	1	reviewed	missense	c.11717	p.R3906Q	0.99	NULL	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
ARSJ	79642	broad.mit.edu	36	4	115043506	115043506	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	115043506	115043506	C	T	SNP	ARSJ	NM_024590	human	genbank	54_36p	-1	validated	silent	c.1173	p.Q391	0.99	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like"	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2"	-	no_errors
TRAM1L1	133022	broad.mit.edu	36	4	118225351	118225351	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	118225351	118225351	T	G	SNP	TRAM1L1	NM_152402	human	genbank	54_36p	-1	validated	missense	c.647	p.N216T	1	"HMMSmart_TLC,HMMPfam_TRAM_LAG1_CLN8"	"HMMPfam_TRAM1,HMMSmart_TLC,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
FABP2	2169	broad.mit.edu	36	4	120460175	120460175	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	120460175	120460175	A	T	SNP	FABP2	NM_000134	human	genbank	54_36p	-1	reviewed	missense	c.312	p.N104K	0	"superfamily_Lipocalins,HMMPfam_Lipocalin"	"superfamily_Lipocalins,HMMPfam_Lipocalin,PatternScan_FABP"	-	no_errors
TNIP3	79931	broad.mit.edu	36	4	122287746	122287746	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	122287746	122287746	G	A	SNP	TNIP3	NM_024873	human	genbank	54_36p	-1	validated	nonsense	c.643	p.R215*	1	NULL	NULL	-	no_errors
ANXA5	308	broad.mit.edu	36	4	122812242	122812242	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	122812242	122812242	C	G	SNP	ANXA5	NM_001154	human	genbank	54_36p	-1	reviewed	missense	c.631	p.D211H	1	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
CCNA2	890	broad.mit.edu	36	4	122961670	122961670	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	122961670	122961670	T	G	SNP	CCNA2	NM_001237	human	genbank	54_36p	-1	validated	missense	c.484	p.I162L	0.03	NULL	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_SM00385,HMMPfam_Cyclin_C"	-	no_errors
BBS7	55212	broad.mit.edu	36	4	122989531	122989531	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	122989531	122989531	C	G	SNP	BBS7	NM_176824	human	genbank	54_36p	-1	reviewed	missense	c.852	p.M284I	0.8	NULL	NULL	-	no_errors
KIAA1109	84162	broad.mit.edu	36	4	123351629	123351629	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	123351629	123351629	G	C	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	missense	c.2176	p.E726Q	1	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_FSA_C"	-	no_errors
KIAA1109	84162	broad.mit.edu	36	4	123387334	123387334	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	123387334	123387334	C	T	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	missense	c.5231	p.T1744M	0.25	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_FSA_C"	-	no_errors
KIAA1109	84162	broad.mit.edu	36	4	123487367	123487385	+	Splice_Site	DEL	TAAGCTTGTTATGTAATTT	-	TAAGCTTGTTATGTAATTT	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	TAAGCTTGTTATGTAATTT	TAAGCTTGTTATGTAATTT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	123487367	123487385	TAAGCTTGTTATGTAATTT	-	DEL	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	splice_site_del	c.12871+2_12871+1	e73+2	1.000:0.998:0.993:0.977:0.024:0.018:0.000:0.000:0.001:0.001:0.000:0.015:0.537:0.587:0.577:0.581:0.002:0.002:0.001	-	-	"(deletion:intron[123487366,123488126])"	no_errors
KIAA1109	84162	broad.mit.edu	36	4	123490564	123490564	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	123490564	123490564	A	G	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	silent	c.13734	p.E4578	1	HMMPfam_FSA_C	"PatternScan_ASP_PROTEASE,HMMPfam_FSA_C"	-	no_errors
KIAA1109	84162	broad.mit.edu	36	4	123500233	123500233	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	123500233	123500233	T	C	SNP	KIAA1109	NM_015312	human	genbank	54_36p	1	validated	missense	c.14707	p.S4903P	1	HMMPfam_FSA_C	"PatternScan_ASP_PROTEASE,HMMPfam_FSA_C"	-	no_errors
BBS12	166379	broad.mit.edu	36	4	123884049	123884049	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	123884049	123884049	A	G	SNP	BBS12	NM_152618	human	genbank	54_36p	1	validated	missense	c.1552	p.R518G	0.52	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1"	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like"	-	no_errors
FAT4	79633	broad.mit.edu	36	4	126460427	126460427	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	126460427	126460427	T	C	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	silent	c.3411	p.Y1137	0.98	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT4	79633	broad.mit.edu	36	4	126461042	126461042	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	126461042	126461042	C	T	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	silent	c.4026	p.S1342	0.74	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT4	79633	broad.mit.edu	36	4	126461302	126461302	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	126461302	126461302	T	C	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	missense	c.4286	p.I1429T	0.96	"HMMPfam_Cadherin,superfamily_Cadherin"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT4	79633	broad.mit.edu	36	4	126461375	126461375	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	126461375	126461375	T	A	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	silent	c.4359	p.G1453	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT4	79633	broad.mit.edu	36	4	126586986	126586991	+	In_Frame_Del	DEL	AAAGAT	-	-	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	AAAGAT	AAAGAT	-	-	AAAGAT	AAAGAT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	126586986	126586991	AAAGAT	-	DEL	FAT4	NM_024582	human	genbank	54_36p	1	validated	in_frame_del	c.7282_7287	p.KD2428in_frame_del	0.769:0.944:0.956:0.995:0.991:0.983	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[126586904,126587148])"	no_errors
FAT4	79633	broad.mit.edu	36	4	126591860	126591860	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	126591860	126591860	C	A	SNP	FAT4	NM_024582	human	genbank	54_36p	1	validated	silent	c.10239	p.I3413	1	"HMMPfam_Cadherin,superfamily_Cadherin"	###############################################################################################################################################################################################################################################################	-	no_errors
HSPA4L	22824	broad.mit.edu	36	4	128971336	128971336	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	128971336	128971336	G	T	SNP	HSPA4L	NM_014278	human	genbank	54_36p	1	provisional	missense	c.2260	p.A754S	1	superfamily_SSF100934	"superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934"	-	no_errors
MFSD8	256471	broad.mit.edu	36	4	129082728	129082728	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	129082728	129082728	C	T	SNP	MFSD8	NM_152778	human	genbank	54_36p	-1	reviewed	missense	c.475	p.A159T	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
C4orf29	80167	broad.mit.edu	36	4	129160698	129160698	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	129160698	129160698	C	T	SNP	C4orf29	NM_001039717	human	genbank	54_36p	1	predicted	missense	c.623	p.A208V	1	"HMMPfam_DUF2048,superfamily_alpha/beta-Hydrolases"	"HMMPfam_DUF2048,superfamily_alpha/beta-Hydrolases"	-	no_errors
SCLT1	132320	broad.mit.edu	36	4	130089114	130089114	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	130089114	130089114	T	A	SNP	SCLT1	NM_144643	human	genbank	54_36p	-1	validated	missense	c.1280	p.E427V	1	NULL	NULL	-	no_errors
SCLT1	132320	broad.mit.edu	36	4	130140282	130140282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	130140282	130140282	G	C	SNP	SCLT1	NM_144643	human	genbank	54_36p	-1	validated	missense	c.544	p.Q182E	1	NULL	NULL	-	no_errors
PCDH10	57575	broad.mit.edu	36	4	134292958	134292958	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	134292958	134292958	T	G	SNP	PCDH10	NM_032961	human	genbank	54_36p	1	reviewed	missense	c.2213	p.V738G	1	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,PatternScan_EGF_1"	-	no_errors
PCDH18	54510	broad.mit.edu	36	4	138671431	138671431	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	138671431	138671431	G	T	SNP	PCDH18	NM_019035	human	genbank	54_36p	-1	reviewed	missense	c.1262	p.A421D	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
CCRN4L	25819	broad.mit.edu	36	4	140183830	140183830	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	140183830	140183830	A	C	SNP	CCRN4L	NM_012118	human	genbank	54_36p	1	reviewed	silent	c.343	p.R115	1	NULL	"HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos"	-	no_errors
ELF2	1998	broad.mit.edu	36	4	140199644	140199644	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	140199644	140199644	T	C	SNP	ELF2	NM_201999	human	genbank	54_36p	-1	validated	silent	c.1689	p.S563	0.98	NULL	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
NAA15	80155	broad.mit.edu	36	4	140500442	140500442	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	140500442	140500442	C	G	SNP	NARG1	NM_057175	human	genbank	54_36p	1	validated	nonsense	c.1353	p.Y451*	1	superfamily_TPR-like	"superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
MAML3	55534	broad.mit.edu	36	4	141030778	141030778	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	141030778	141030778	G	C	SNP	MAML3	NM_018717	human	genbank	54_36p	-1	validated	missense	c.1262	p.P421R	1	NULL	HMMPfam_MamL-1	-	no_errors
ELMOD2	255520	broad.mit.edu	36	4	141666057	141666057	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	141666057	141666057	T	A	SNP	ELMOD2	NM_153702	human	genbank	54_36p	1	provisional	missense	c.25	p.F9I	1	NULL	HMMPfam_ELMO_CED12	-	no_errors
TBC1D9	23158	broad.mit.edu	36	4	141774620	141774620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	141774620	141774620	C	T	SNP	TBC1D9	NM_015130	human	genbank	54_36p	-1	validated	missense	c.2678	p.R893H	1	superfamily_EF-hand	"HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand"	-	no_errors
RNF150	57484	broad.mit.edu	36	4	142108464	142108464	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	142108464	142108464	G	A	SNP	RNF150	NM_020724	human	genbank	54_36p	-1	validated	silent	c.498	p.I166	0.63	"superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA"	"superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
OTUD4	54726	broad.mit.edu	36	4	146278178	146278178	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	146278178	146278178	C	A	SNP	OTUD4	NM_001102653	human	genbank	54_36p	-1	reviewed	missense	c.3004	p.V1002L	0	NULL	"superfamily_SSF54001,HMMPfam_OTU"	-	no_errors
MMAA	166785	broad.mit.edu	36	4	146794600	146794600	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	146794600	146794600	T	C	SNP	MMAA	NM_172250	human	genbank	54_36p	1	reviewed	missense	c.824	p.I275T	1	"HMMPfam_ArgK,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_ArgK,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DCLK2	166614	broad.mit.edu	36	4	151380349	151380349	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	151380349	151380349	T	G	SNP	DCLK2	NM_001040260	human	genbank	54_36p	1	validated	missense	c.1572	p.C524W	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
LRBA	987	broad.mit.edu	36	4	151577369	151577369	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	151577369	151577369	T	G	SNP	LRBA	NM_006726	human	genbank	54_36p	-1	validated	missense	c.6911	p.H2304P	1	"superfamily_BEACH domain,HMMPfam_Beach"	"superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
MAB21L2	10586	broad.mit.edu	36	4	151724424	151724424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	151724424	151724424	C	A	SNP	MAB21L2	NM_006439	human	genbank	54_36p	1	reviewed	missense	c.793	p.P265T	1	HMMPfam_Mab-21	HMMPfam_Mab-21	-	no_errors
SH3D19	152503	broad.mit.edu	36	4	152268306	152268306	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	152268306	152268306	T	G	SNP	SH3D19	NM_001009555	human	genbank	54_36p	-1	validated	missense	c.2161	p.S721R	0.01	superfamily_SH3-domain	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_SH3_1"	-	no_errors
FBXW7	55294	broad.mit.edu	36	4	153463655	153463655	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	153463655	153463655	A	T	SNP	FBXW7	NM_033632	human	genbank	54_36p	-1	reviewed	nonsense	c.1952	p.L651*	1	PatternScan_WD_REPEATS_1	"HMMSmart_SM00320,HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain"	-	no_errors
FHDC1	85462	broad.mit.edu	36	4	154094886	154094886	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	154094886	154094886	C	G	SNP	FHDC1	NM_033393	human	genbank	54_36p	1	validated	missense	c.628	p.R210G	0.99	"superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	"superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
RNF175	285533	broad.mit.edu	36	4	154856233	154856233	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	154856233	154856233	C	T	SNP	RNF175	NM_173662	human	genbank	54_36p	-1	validated	missense	c.662	p.S221N	0.79	superfamily_RING/U-box	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
SFRP2	6423	broad.mit.edu	36	4	154922125	154922125	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	154922125	154922125	C	G	SNP	SFRP2	NM_003013	human	genbank	54_36p	-1	reviewed	silent	c.816	p.S272	0.94	"superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	-	no_errors
SFRP2	6423	broad.mit.edu	36	4	154922237	154922237	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	4	154922237	154922237	G	A	SNP	SFRP2	NM_003013	human	genbank	54_36p	-1	reviewed	missense	c.704	p.S235L	0.99	"superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643"	"superfamily_Frizzled cysteine-rich domain,superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643,HMMPfam_Fz,HMMSmart_SM00063"	-	no_errors
DCHS2	54798	broad.mit.edu	36	4	155438480	155438480	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	155438480	155438480	C	G	SNP	DCHS2	NM_017639	human	genbank	54_36p	-1	validated	missense	c.5071	p.G1691R	0.06	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
FGB	2244	broad.mit.edu	36	4	155708244	155708244	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	155708244	155708244	A	G	SNP	FGB	NM_005141	human	genbank	54_36p	1	reviewed	silent	c.540	p.Q180	0	HMMPfam_Fib_beta	"HMMPfam_Fib_beta,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
FGA	2243	broad.mit.edu	36	4	155725231	155725231	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	155725231	155725231	A	T	SNP	FGA	NM_000508	human	genbank	54_36p	-1	reviewed	missense	c.2096	p.L699Q	1	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C"	"HMMPfam_Fib_alpha,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
FGA	2243	broad.mit.edu	36	4	155726337	155726337	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	155726337	155726337	G	T	SNP	FGA	NM_000508	human	genbank	54_36p	-1	reviewed	missense	c.1694	p.P565H	0	NULL	"HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fib_alpha"	-	no_errors
FGA	2243	broad.mit.edu	36	4	155726409	155726409	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	155726409	155726409	A	T	SNP	FGA	NM_000508	human	genbank	54_36p	-1	reviewed	missense	c.1622	p.V541D	0	NULL	"HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fib_alpha"	-	no_errors
MAP9	79884	broad.mit.edu	36	4	156500847	156500847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	156500847	156500847	C	A	SNP	MAP9	NM_001039580	human	genbank	54_36p	-1	validated	missense	c.973	p.D325Y	0	NULL	NULL	-	no_errors
GUCY1B3	2983	broad.mit.edu	36	4	156943004	156943004	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	156943004	156943004	G	A	SNP	GUCY1B3	NM_000857	human	genbank	54_36p	1	validated	silent	c.1236	p.V412	1	"HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc"	"HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
GUCY1B3	2983	broad.mit.edu	36	4	156943097	156943097	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	156943097	156943097	C	G	SNP	GUCY1B3	NM_000857	human	genbank	54_36p	1	validated	silent	c.1329	p.A443	1	"HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain"	"HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ACCN5	51802	broad.mit.edu	36	4	157004085	157004085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	157004085	157004085	C	A	SNP	ACCN5	NM_017419	human	genbank	54_36p	-1	reviewed	missense	c.312	p.M104I	0.49	HMMPfam_ASC	"PatternScan_ASC,HMMPfam_ASC"	-	no_errors
GRIA2	2891	broad.mit.edu	36	4	158473930	158473930	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	158473930	158473930	A	T	SNP	GRIA2	NM_000826	human	genbank	54_36p	1	reviewed	missense	c.1130	p.E377V	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRIA2	2891	broad.mit.edu	36	4	158477126	158477132	+	Frame_Shift_Del	DEL	CCTTTAG	-	CCTTTAG	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	CCTTTAG	CCTTTAG	-	-	CCTTTAG	CCTTTAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	158477126	158477132	CCTTTAG	-	DEL	GRIA2	NM_000826	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1621_1627	p.L542fs	1.000:1.000:0.980:0.995:1.000:1.000:1.000	"superfamily_SSF53850,HMMSmart_PBPe"	"superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	"(deletion:cds_exon[158476979,158477349])"	no_errors
ETFDH	2110	broad.mit.edu	36	4	159847245	159847254	+	Frame_Shift_Del	DEL	CGGCTCAAGC	-	CGGCTCAAGC	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	CGGCTCAAGC	CGGCTCAAGC	-	-	CGGCTCAAGC	CGGCTCAAGC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	159847245	159847254	CGGCTCAAGC	-	DEL	ETFDH	NM_004453	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1483_1492	p.R495fs	0.851:0.997:1.000:1.000:1.000:0.968:1.000:1.000:1.000:1.000	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_ETF_QO"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,HMMPfam_ETF_QO"	"(deletion:cds_exon[159847231,159847452])"	no_errors
RAPGEF2	9693	broad.mit.edu	36	4	160484003	160484003	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	160484003	160484003	C	T	SNP	RAPGEF2	NM_014247	human	genbank	54_36p	1	validated	missense	c.2768	p.T923I	1	"superfamily_Ras_GEF,HMMSmart_RasGEF"	"superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,superfamily_Ras_GEF,HMMSmart_RasGEFN,HMMPfam_RasGEF_N,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMPfam_RA,HMMSmart_RA,HMMSmart_RasGEF,HMMPfam_RasGEF"	-	no_errors
FSTL5	56884	broad.mit.edu	36	4	162621631	162621631	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	4	162621631	162621631	T	A	SNP	FSTL5	NM_020116	human	genbank	54_36p	-1	validated	missense	c.1599	p.K533N	1	superfamily_Amine_DH_B_like	"PatternScan_KAZAL,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_efhand,superfamily_SSF47473,PatternScan_EF_HAND_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_Amine_DH_B_like"	-	no_errors
FSTL5	56884	broad.mit.edu	36	4	162728158	162728158	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	162728158	162728158	G	T	SNP	FSTL5	NM_020116	human	genbank	54_36p	-1	validated	missense	c.914	p.S305Y	1	"HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726"	"HMMPfam_Kazal_1,HMMSmart_KAZAL,PatternScan_KAZAL,HMMSmart_IGc2,superfamily_Amine_DH_B_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF100895,superfamily_SSF47473,superfamily_SSF48726"	-	no_errors
NAF1	92345	broad.mit.edu	36	4	164286454	164286454	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	164286454	164286454	G	C	SNP	NAF1	NM_138386	human	genbank	54_36p	-1	validated	missense	c.647	p.S216C	1	HMMPfam_NAF1	HMMPfam_NAF1	-	no_errors
TKTL2	84076	broad.mit.edu	36	4	164612997	164612997	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	164612997	164612997	C	A	SNP	TKTL2	NM_032136	human	genbank	54_36p	-1	validated	missense	c.1340	p.C447F	0.99	"superfamily_SSF52518,HMMPfam_Transket_pyr"	"PatternScan_TRANSKETOLASE_1,PatternScan_TRANSKETOLASE_2,superfamily_SSF52518,HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,superfamily_Transketo_C_like,HMMPfam_Transketolase_C"	-	no_errors
TKTL2	84076	broad.mit.edu	36	4	164614169	164614169	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	164614169	164614169	C	T	SNP	TKTL2	NM_032136	human	genbank	54_36p	-1	validated	silent	c.168	p.T56	1	"HMMPfam_Transketolase_N,superfamily_SSF52518"	"HMMPfam_Transketolase_N,PatternScan_TRANSKETOLASE_1,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_Transketo_C_like,superfamily_SSF52518"	-	no_errors
ANP32C	23520	broad.mit.edu	36	4	165337616	165337616	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	165337616	165337616	C	T	SNP	ANP32C	NM_012403	human	genbank	54_36p	-1	reviewed	missense	c.698	p.R233Q	0.82	NULL	"superfamily_L domain-like,HMMPfam_LRR_1"	-	no_errors
ANP32C	23520	broad.mit.edu	36	4	165337738	165337738	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	165337738	165337738	C	T	SNP	ANP32C	NM_012403	human	genbank	54_36p	-1	reviewed	silent	c.576	p.E192	1	NULL	"HMMPfam_LRR_1,superfamily_L domain-like"	-	no_errors
CPE	1363	broad.mit.edu	36	4	166625129	166625129	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	166625129	166625129	C	A	SNP	CPE	NM_001873	human	genbank	54_36p	1	reviewed	missense	c.896	p.P299Q	1	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631"	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain"	-	no_errors
TLL1	7092	broad.mit.edu	36	4	167144075	167144075	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	167144075	167144075	G	T	SNP	TLL1	NM_012464	human	genbank	54_36p	1	reviewed	missense	c.715	p.V239F	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin"	###############################################################################################################################################################################################################################################################	-	no_errors
DDX60	55601	broad.mit.edu	36	4	169443135	169443135	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	169443135	169443135	A	G	SNP	DDX60	NM_017631	human	genbank	54_36p	-1	validated	silent	c.1429	p.L477	0.33	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
DDX60L	91351	broad.mit.edu	36	4	169610856	169610882	+	In_Frame_Del	DEL	TAAGAAAGAATCACTGTTCCTAATCCA	-	TAAGAAAGAATCACTGTTCCTAATCCA	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	TAAGAAAGAATCACTGTTCCTAATCCA	TAAGAAAGAATCACTGTTCCTAATCCA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	169610856	169610882	TAAGAAAGAATCACTGTTCCTAATCCA	-	DEL	DDX60L	NM_001012967	human	genbank	54_36p	-1	validated	in_frame_del	c.990_964	p.WIRNSDSFL322in_frame_del	0.855:0.745:0.196:0.129:0.122:0.073:0.005:0.004:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.002:0.010:0.029:0.031:0.020	NULL	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	"(deletion:cds_exon[169610850,169611008])"	no_errors
PALLD	23022	broad.mit.edu	36	4	169669713	169669737	+	Frame_Shift_Del	DEL	GGGTGGCCCCCAGAGCCAGCTGTGT	-	GGGTGGCCCCCAGAGCCAGCTGTGT	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	GGGTGGCCCCCAGAGCCAGCTGTGT	GGGTGGCCCCCAGAGCCAGCTGTGT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	4	169669713	169669737	GGGTGGCCCCCAGAGCCAGCTGTGT	-	DEL	PALLD	NM_016081	human	genbank	54_36p	1	validated	frame_shift_del	c.483_507	p.G162fs	0.000:0.002:0.037:0.145:0.514:0.723:0.724:0.732:0.742:0.800:0.926:0.985:0.994:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.996	NULL	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,PatternScan_DEHYDRATASE_SER_THR"	"(deletion:cds_exon[169669231,169670138])"	no_errors
PALLD	23022	broad.mit.edu	36	4	170056248	170056248	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	170056248	170056248	A	G	SNP	PALLD	NM_016081	human	genbank	54_36p	1	validated	silent	c.2229	p.R743	0.99	NULL	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,PatternScan_DEHYDRATASE_SER_THR"	-	no_errors
NEK1	4750	broad.mit.edu	36	4	170634947	170634947	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	170634947	170634947	T	A	SNP	NEK1	NM_012224	human	genbank	54_36p	-1	validated	missense	c.2253	p.K751N	0	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MFAP3L	9848	broad.mit.edu	36	4	171149977	171149977	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	171149977	171149977	G	T	SNP	MFAP3L	NM_021647	human	genbank	54_36p	-1	validated	missense	c.357	p.D119E	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
GALNTL6	442117	broad.mit.edu	36	4	173967244	173967244	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	173967244	173967244	C	A	SNP	GALNTL6	NM_001034845	human	genbank	54_36p	1	validated	silent	c.711	p.V237	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
SAP30	8819	broad.mit.edu	36	4	174529208	174529208	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	174529208	174529208	C	A	SNP	SAP30	NM_003864	human	genbank	54_36p	1	reviewed	silent	c.300	p.I100	1	NULL	NULL	-	no_errors
GLRA3	8001	broad.mit.edu	36	4	175816848	175816848	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	175816848	175816848	C	T	SNP	GLRA3	NM_006529	human	genbank	54_36p	-1	validated	missense	c.1003	p.A335T	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
ADAM29	11086	broad.mit.edu	36	4	176133429	176133429	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	4	176133429	176133429	G	A	SNP	ADAM29	NM_014269	human	genbank	54_36p	1	reviewed	missense	c.178	p.G60S	0.25	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-	no_errors
WDR17	116966	broad.mit.edu	36	4	177283414	177283414	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	177283414	177283414	T	C	SNP	WDR17	NM_170710	human	genbank	54_36p	1	reviewed	missense	c.776	p.I259T	1	"superfamily_Amine_DH_B_like,HMMSmart_WD40"	"HMMSmart_WD40,HMMPfam_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like,PatternScan_WD_REPEATS_1"	-	no_errors
WDR17	116966	broad.mit.edu	36	4	177326792	177326792	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	177326792	177326792	G	T	SNP	WDR17	NM_170710	human	genbank	54_36p	1	reviewed	splice_site	c.3084-1	e24-1	0	-	-	-	no_errors
SPCS3	60559	broad.mit.edu	36	4	177478319	177478319	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	177478319	177478319	A	T	SNP	SPCS3	NM_021928	human	genbank	54_36p	1	validated	missense	c.98	p.K33I	1	HMMPfam_SPC22	"PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_SPC22"	-	no_errors
SPCS3	60559	broad.mit.edu	36	4	177480368	177480368	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	177480368	177480368	T	C	SNP	SPCS3	NM_021928	human	genbank	54_36p	1	validated	missense	c.197	p.I66T	1	HMMPfam_SPC22	"HMMPfam_SPC22,PatternScan_TONB_DEPENDENT_REC_1"	-	no_errors
ODZ3	10178	broad.mit.edu	36	4	183951076	183951076	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	183951076	183951076	G	A	SNP	ODZ3	NM_001080477	human	genbank	54_36p	1	provisional	missense	c.6257	p.R2086H	1	NULL	"HMMPfam_Ten_N,HMMPfam_EGF_2,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMSmart_EGF,superfamily_CarboxypepD_reg,superfamily_SSF101898,HMMPfam_NHL,superfamily_SSF63829,HMMPfam_RHS_repeat"	-	no_errors
DCTD	1635	broad.mit.edu	36	4	184052681	184052681	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	184052681	184052681	C	G	SNP	DCTD	NM_001012732	human	genbank	54_36p	-1	reviewed	missense	c.349	p.A117P	1	"HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES"	"HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES"	-	no_errors
WWC2	80014	broad.mit.edu	36	4	184427293	184427293	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	184427293	184427293	C	T	SNP	WWC2	NM_024949	human	genbank	54_36p	1	validated	nonsense	c.2383	p.R795*	0.01	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
RWDD4	201965	broad.mit.edu	36	4	184809194	184809194	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	184809194	184809194	C	A	SNP	RWDD4A	NM_152682	human	genbank	54_36p	-1	validated	missense	c.300	p.L100F	1	"HMMPfam_RWD,superfamily_UBQ-conjugat/RWD-like,HMMSmart_RWD"	"HMMPfam_RWD,superfamily_UBQ-conjugat/RWD-like,HMMSmart_RWD"	-	no_errors
STOX2	56977	broad.mit.edu	36	4	185168075	185168075	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	185168075	185168075	C	T	SNP	STOX2	NM_020225	human	genbank	54_36p	1	provisional	missense	c.1090	p.R364W	0.88	NULL	HMMPfam_Stork_head	-	no_errors
ACSL1	2180	broad.mit.edu	36	4	185926492	185926492	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	4	185926492	185926492	G	A	SNP	ACSL1	NM_001995	human	genbank	54_36p	-1	reviewed	missense	c.1100	p.P367L	0.99	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
SNX25	83891	broad.mit.edu	36	4	186500204	186500204	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	186500204	186500204	G	C	SNP	SNX25	NM_031953	human	genbank	54_36p	1	validated	missense	c.1635	p.K545N	1	"superfamily_PX,HMMSmart_PX,HMMPfam_PX"	"HMMPfam_PXA,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_PX,HMMSmart_PX,HMMPfam_PX,HMMPfam_Nexin_C"	-	no_errors
PDLIM3	27295	broad.mit.edu	36	4	186666465	186666465	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	186666465	186666465	C	G	SNP	PDLIM3	NM_014476	human	genbank	54_36p	-1	reviewed	missense	c.644	p.G215A	1	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00735,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
SORBS2	8470	broad.mit.edu	36	4	186773304	186773304	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	186773304	186773304	C	-	DEL	SORBS2	NM_021069	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2643	p.E881fs	0.9	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"HMMPfam_Sorb,HMMSmart_SM00459,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"(deletion:cds_exon[186773193,186773307])"	no_errors
KLKB1	3818	broad.mit.edu	36	4	187390383	187390383	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	187390383	187390383	G	A	SNP	KLKB1	NM_000892	human	genbank	54_36p	1	reviewed	missense	c.167	p.R56K	0.92	"HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1"	"HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
FAT1	2195	broad.mit.edu	36	4	187762555	187762555	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	187762555	187762555	C	A	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.10518	p.K3506N	0.06	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	broad.mit.edu	36	4	187777935	187777935	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	187777935	187777935	C	A	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.6799	p.V2267L	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	broad.mit.edu	36	4	187779859	187779859	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	187779859	187779859	T	G	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.4875	p.L1625F	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT1	2195	broad.mit.edu	36	4	187786453	187786453	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	187786453	187786453	G	C	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.4659	p.S1553R	0.34	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ZFP42	132625	broad.mit.edu	36	4	189161254	189161254	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	189161254	189161254	A	C	SNP	ZFP42	NM_174900	human	genbank	54_36p	1	validated	missense	c.299	p.K100T	0	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
TUBB4Q	56604	broad.mit.edu	36	4	191140885	191140886	+	Missense_Mutation	DNP	TG	TG	AA	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	191140885	191140886	TG	AA	DNP	TUBB4Q	NM_020040	human	genbank	54_36p	-1	validated	missense	c.1092_1091	p.S364F	1.000:1.000	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_start_codon
FRG2	448831	broad.mit.edu	36	4	191183946	191183946	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	4	191183946	191183946	G	T	SNP	FRG2	NM_001005217	human	genbank	54_36p	-1	provisional	missense	c.601	p.P201T	0	NULL	NULL	-	no_errors
FRG2	448831	broad.mit.edu	36	4	191185200	191185200	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	4	191185200	191185200	T	A	SNP	FRG2	NM_001005217	human	genbank	54_36p	-1	provisional	missense	c.154	p.S52C	0	NULL	NULL	-	no_errors
PLEKHG4B	153478	broad.mit.edu	36	5	209195	209195	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	209195	209195	G	T	SNP	PLEKHG4B	NM_052909	human	genbank	54_36p	1	validated	nonsense	c.1150	p.E384*	0.01	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
SDHA	6389	broad.mit.edu	36	5	279126	279126	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	279126	279126	G	T	SNP	SDHA	NM_004168	human	genbank	54_36p	1	reviewed	silent	c.585	p.R195	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_2"	###############################################################################################################################################################################################################################################################	-	no_errors
EXOC3	11336	broad.mit.edu	36	5	507157	507157	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	507157	507157	C	A	SNP	EXOC3	NM_007277	human	genbank	54_36p	1	reviewed	missense	c.1037	p.T346N	1	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors
CEP72	55722	broad.mit.edu	36	5	677630	677630	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	677630	677630	C	T	SNP	CEP72	NM_018140	human	genbank	54_36p	1	reviewed	missense	c.448	p.H150Y	0.96	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRcap"	-	no_errors
CEP72	55722	broad.mit.edu	36	5	692308	692308	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	692308	692308	C	A	SNP	CEP72	NM_018140	human	genbank	54_36p	1	reviewed	nonsense	c.1311	p.C437*	0.66	NULL	"HMMPfam_LRR_1,HMMSmart_LRRcap,superfamily_SSF52058"	-	no_errors
BRD9	65980	broad.mit.edu	36	5	918625	918625	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	918625	918625	C	A	SNP	BRD9	NM_023924	human	genbank	54_36p	-1	provisional	missense	c.1309	p.D437Y	1	NULL	"superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain"	-	no_errors
SLC12A7	10723	broad.mit.edu	36	5	1129888	1129889	+	Nonsense_Mutation	DNP	CC	CC	GT	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	1129888	1129889	CC	GT	DNP	SLC12A7	NM_006598	human	genbank	54_36p	-1	validated	nonsense	c.1669_1668	p.WAL556*	1.000:1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC6A18	348932	broad.mit.edu	36	5	1285360	1285360	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	1285360	1285360	G	A	SNP	SLC6A18	NM_182632	human	genbank	54_36p	1	validated	missense	c.187	p.A63T	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
CLPTM1L	81037	broad.mit.edu	36	5	1397548	1397548	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	1397548	1397548	T	C	SNP	CLPTM1L	NM_030782	human	genbank	54_36p	-1	provisional	missense	c.181	p.T61A	1	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors
SLC6A3	6531	broad.mit.edu	36	5	1485744	1485744	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	1485744	1485744	G	A	SNP	SLC6A3	NM_001044	human	genbank	54_36p	-1	validated	missense	c.488	p.A163V	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
LPCAT1	79888	broad.mit.edu	36	5	1547896	1547896	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	1547896	1547896	A	C	SNP	LPCAT1	NM_024830	human	genbank	54_36p	-1	validated	missense	c.412	p.Y138D	1	"superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC"	"PatternScan_EF_HAND_1,superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF47473,HMMSmart_EFh"	-	no_errors
IRX4	50805	broad.mit.edu	36	5	1932925	1932925	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	1932925	1932925	G	C	SNP	IRX4	NM_016358	human	genbank	54_36p	-1	validated	silent	c.429	p.G143	1	"superfamily_Homeodomain-like,HMMSmart_SM00389"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMSmart_SM00548"	-	no_errors
IRX1	79192	broad.mit.edu	36	5	3652431	3652431	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	3652431	3652431	C	T	SNP	IRX1	NM_024337	human	genbank	54_36p	1	validated	silent	c.369	p.F123	1	superfamily_Homeodomain_like	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMSmart_IRO"	-	no_errors
ADAMTS16	170690	broad.mit.edu	36	5	5288235	5288235	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	5288235	5288235	C	T	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	silent	c.1959	p.A653	0.84	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
ADAMTS16	170690	broad.mit.edu	36	5	5371299	5371299	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	5371299	5371299	C	T	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	missense	c.3464	p.A1155V	0	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS16	170690	broad.mit.edu	36	5	5371344	5371344	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	5371344	5371344	C	T	SNP	ADAMTS16	NM_139056	human	genbank	54_36p	1	reviewed	missense	c.3509	p.S1170L	0	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
KIAA0947	23379	broad.mit.edu	36	5	5513573	5513573	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	5513573	5513573	G	A	SNP	KIAA0947	NM_015325	human	genbank	54_36p	1	validated	missense	c.1126	p.D376N	0.69	NULL	NULL	-	no_errors
KIAA0947	23379	broad.mit.edu	36	5	5517525	5517525	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	5517525	5517525	C	G	SNP	KIAA0947	NM_015325	human	genbank	54_36p	1	validated	missense	c.5078	p.P1693R	0.01	NULL	NULL	-	no_errors
MED10	84246	broad.mit.edu	36	5	6425624	6425624	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	6425624	6425624	G	A	SNP	MED10	NM_032286	human	genbank	54_36p	-1	validated	missense	c.400	p.P134S	0.9	NULL	HMMPfam_Med10	-	no_errors
PAPD7	11044	broad.mit.edu	36	5	6801679	6801679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	5	6801679	6801679	C	G	SNP	POLS	NM_006999	human	genbank	54_36p	1	reviewed	missense	c.812	p.S271C	1	NULL	"superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc"	-	no_errors
PAPD7	11044	broad.mit.edu	36	5	6804185	6804185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	6804185	6804185	G	A	SNP	POLS	NM_006999	human	genbank	54_36p	1	reviewed	missense	c.1144	p.V382I	0.97	NULL	"HMMPfam_PAP_assoc,HMMPfam_NTP_transf_2,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain"	-	no_errors
ADCY2	108	broad.mit.edu	36	5	7467689	7467689	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	7467689	7467689	G	T	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	missense	c.214	p.V72F	0.81	NULL	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
ADCY2	108	broad.mit.edu	36	5	7679422	7679422	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	7679422	7679422	G	A	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	missense	c.713	p.R238H	0.99	HMMSmart_CYCc	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ADCY2	108	broad.mit.edu	36	5	7855364	7855364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	7855364	7855364	G	A	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	missense	c.2662	p.V888I	1	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase"	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ADCY2	108	broad.mit.edu	36	5	7879918	7879918	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	7879918	7879918	C	T	SNP	ADCY2	NM_020546	human	genbank	54_36p	1	reviewed	silent	c.3210	p.D1070	1	"HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase"	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
MTRR	4552	broad.mit.edu	36	5	7950055	7950055	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	7950055	7950055	G	T	SNP	MTRR	NM_024010	human	genbank	54_36p	1	reviewed	missense	c.1836	p.R612S	0.93	"superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1"	"superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1"	-	no_errors
SEMA5A	9037	broad.mit.edu	36	5	9277934	9277934	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	9277934	9277934	C	T	SNP	SEMA5A	NM_003966	human	genbank	54_36p	-1	validated	silent	c.498	p.Q166	1	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1"	-	no_errors
TAS2R1	50834	broad.mit.edu	36	5	9682601	9682601	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	9682601	9682601	C	A	SNP	TAS2R1	NM_019599	human	genbank	54_36p	-1	reviewed	nonsense	c.544	p.E182*	0	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
CCT5	22948	broad.mit.edu	36	5	10316335	10316335	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	10316335	10316335	T	G	SNP	CCT5	NM_012073	human	genbank	54_36p	1	reviewed	missense	c.1407	p.N469K	0.96	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1"	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like"	-	no_errors
CTNND2	1501	broad.mit.edu	36	5	11289923	11289923	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	11289923	11289923	C	G	SNP	CTNND2	NM_001332	human	genbank	54_36p	-1	validated	missense	c.1641	p.W547C	1	"superfamily_ARM repeat,HMMPfam_Arm"	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
DNAH5	1767	broad.mit.edu	36	5	13822114	13822114	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	13822114	13822114	C	A	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	silent	c.9852	p.L3284	0.99	NULL	"HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DNAH5	1767	broad.mit.edu	36	5	13822233	13822233	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	13822233	13822233	C	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.9733	p.V3245M	1	NULL	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAH5	1767	broad.mit.edu	36	5	13823873	13823873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	13823873	13823873	C	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.9590	p.R3197Q	0.64	superfamily_SSF52540	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAH5	1767	broad.mit.edu	36	5	13823873	13823873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	13823873	13823873	C	T	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.9590	p.R3197Q	0.64	superfamily_SSF52540	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
DNAH5	1767	broad.mit.edu	36	5	13823874	13823874	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	13823874	13823874	G	A	SNP	DNAH5	NM_001369	human	genbank	54_36p	-1	validated	missense	c.9589	p.R3197W	0.81	superfamily_SSF52540	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540"	-	no_errors
TRIO	7204	broad.mit.edu	36	5	14350204	14350204	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	14350204	14350204	C	G	SNP	TRIO	NM_007118	human	genbank	54_36p	1	validated	silent	c.1200	p.R400	1	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	-	no_errors
TRIO	7204	broad.mit.edu	36	5	14472940	14472940	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	14472940	14472940	C	G	SNP	TRIO	NM_007118	human	genbank	54_36p	1	validated	missense	c.5013	p.N1671K	1	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	###############################################################################################################################################################################################################################################################	-	no_errors
FAM105B	90268	broad.mit.edu	36	5	14734611	14734611	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	14734611	14734611	G	T	SNP	FAM105B	NM_138348	human	genbank	54_36p	1	validated	silent	c.363	p.R121	1	NULL	NULL	-	no_errors
FAM105B	90268	broad.mit.edu	36	5	14743252	14743252	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	14743252	14743252	A	T	SNP	FAM105B	NM_138348	human	genbank	54_36p	1	validated	missense	c.699	p.K233N	1	NULL	NULL	-	no_errors
ZNF622	90441	broad.mit.edu	36	5	16504862	16504862	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	16504862	16504862	C	T	SNP	ZNF622	NM_033414	human	genbank	54_36p	-1	provisional	silent	c.1338	p.Q446	1	NULL	"HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2"	-	no_errors
FAM134B	54463	broad.mit.edu	36	5	16532054	16532054	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	16532054	16532054	A	G	SNP	FAM134B	NM_001034850	human	genbank	54_36p	-1	validated	missense	c.713	p.I238T	1	NULL	NULL	-	no_errors
MYO10	4651	broad.mit.edu	36	5	16725879	16725879	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	16725879	16725879	G	A	SNP	MYO10	NM_012334	human	genbank	54_36p	-1	validated	missense	c.5228	p.A1743V	1	"HMMSmart_B41,HMMPfam_RA"	"PatternScan_FERM_1,PatternScan_FERM_2,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_MyTH4,HMMPfam_MyTH4,HMMSmart_B41,HMMPfam_RA,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	-	no_errors
MYO10	4651	broad.mit.edu	36	5	16754433	16754433	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	16754433	16754433	C	T	SNP	MYO10	NM_012334	human	genbank	54_36p	-1	validated	missense	c.3071	p.R1024Q	1	NULL	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540"	-	no_errors
CDH18	1016	broad.mit.edu	36	5	19519330	19519330	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	19519330	19519330	A	T	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	silent	c.1719	p.G573	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH18	1016	broad.mit.edu	36	5	19556547	19556547	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	19556547	19556547	T	A	SNP	CDH18	NM_004934	human	genbank	54_36p	-1	reviewed	silent	c.1488	p.V496	1	"HMMPfam_Cadherin,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
PRDM9	56979	broad.mit.edu	36	5	23558665	23558665	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	23558665	23558665	G	A	SNP	PRDM9	NM_020227	human	genbank	54_36p	1	provisional	missense	c.796	p.D266N	0.09	"superfamily_SSF82199,HMMSmart_SET"	"superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB,HMMPfam_SSXRD,superfamily_SSF82199,HMMSmart_SET,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2"	-	no_errors
PRDM9	56979	broad.mit.edu	36	5	23562102	23562102	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	5	23562102	23562102	C	G	SNP	PRDM9	NM_020227	human	genbank	54_36p	1	provisional	missense	c.1148	p.P383R	0.25	superfamily_SSF82199	"HMMSmart_SET,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_SSXRD,superfamily_SSF57667,superfamily_SSF82199"	-	no_errors
PRDM9	56979	broad.mit.edu	36	5	23563012	23563012	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	23563012	23563012	C	G	SNP	PRDM9	NM_020227	human	genbank	54_36p	1	provisional	missense	c.2058	p.H686Q	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMSmart_SET,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_SSXRD,superfamily_SSF57667,superfamily_SSF82199"	-	no_errors
PRDM9	56979	broad.mit.edu	36	5	23563434	23563434	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	5	23563434	23563434	C	G	SNP	PRDM9	NM_020227	human	genbank	54_36p	1	provisional	missense	c.2480	p.T827R	1	superfamily_SSF57667	"HMMSmart_SET,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_SSXRD,superfamily_SSF57667,superfamily_SSF82199"	-	no_errors
CDH10	1008	broad.mit.edu	36	5	24523914	24523914	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	24523914	24523914	C	T	SNP	CDH10	NM_006727	human	genbank	54_36p	-1	reviewed	missense	c.1982	p.G661D	1	HMMPfam_Cadherin_C	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH9	1007	broad.mit.edu	36	5	26921537	26921537	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	26921537	26921537	C	T	SNP	CDH9	NM_016279	human	genbank	54_36p	-1	reviewed	missense	c.1825	p.A609T	0.99	NULL	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH9	1007	broad.mit.edu	36	5	26938369	26938369	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	26938369	26938369	T	A	SNP	CDH9	NM_016279	human	genbank	54_36p	-1	reviewed	missense	c.1226	p.D409V	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH9	1007	broad.mit.edu	36	5	27024174	27024174	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	27024174	27024174	T	C	SNP	CDH9	NM_016279	human	genbank	54_36p	-1	reviewed	silent	c.24	p.P8	0	NULL	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH6	1004	broad.mit.edu	36	5	31335411	31335411	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	5	31335411	31335411	G	A	SNP	CDH6	NM_004932	human	genbank	54_36p	1	reviewed	missense	c.727	p.G243S	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
RNASEN	29102	broad.mit.edu	36	5	31485180	31485180	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	31485180	31485180	T	A	SNP	RNASEN	NM_013235	human	genbank	54_36p	-1	validated	missense	c.2786	p.D929V	1	superfamily_RNase III catalytic domain-like (Pfam 00636)	"superfamily_RNase III catalytic domain-like (Pfam 00636),HMMSmart_SM00535,PatternScan_RNASE_3_1,HMMPfam_Ribonuclease_3,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358"	-	no_errors
PDZD2	23037	broad.mit.edu	36	5	32096873	32096873	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	32096873	32096873	A	T	SNP	PDZD2	NM_178140	human	genbank	54_36p	1	reviewed	missense	c.2327	p.D776V	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
PDZD2	23037	broad.mit.edu	36	5	32125376	32125376	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	32125376	32125376	G	A	SNP	PDZD2	NM_178140	human	genbank	54_36p	1	reviewed	missense	c.6065	p.C2022Y	0.01	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
PDZD2	23037	broad.mit.edu	36	5	32128781	32128781	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	32128781	32128781	T	G	SNP	PDZD2	NM_178140	human	genbank	54_36p	1	reviewed	missense	c.7739	p.L2580R	0.97	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
TARS	6897	broad.mit.edu	36	5	33481256	33481256	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	33481256	33481256	G	A	SNP	TARS	NM_152295	human	genbank	54_36p	1	reviewed	missense	c.127	p.G43S	1	NULL	"HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
ADAMTS12	81792	broad.mit.edu	36	5	33679330	33679330	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	33679330	33679330	G	C	SNP	ADAMTS12	NM_030955	human	genbank	54_36p	-1	reviewed	missense	c.1482	p.N494K	0.97	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
RXFP3	51289	broad.mit.edu	36	5	33973156	33973156	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	33973156	33973156	C	T	SNP	RXFP3	NM_016568	human	genbank	54_36p	1	provisional	missense	c.554	p.A185V	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
SLC45A2	51151	broad.mit.edu	36	5	33990231	33990231	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	33990231	33990231	T	A	SNP	SLC45A2	NM_016180	human	genbank	54_36p	-1	reviewed	missense	c.1024	p.M342L	1	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
SLC45A2	51151	broad.mit.edu	36	5	33999621	33999621	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	33999621	33999621	C	A	SNP	SLC45A2	NM_016180	human	genbank	54_36p	-1	reviewed	missense	c.820	p.V274F	1	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
SLC45A2	51151	broad.mit.edu	36	5	33999763	33999763	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	33999763	33999763	G	A	SNP	SLC45A2	NM_016180	human	genbank	54_36p	-1	reviewed	silent	c.678	p.L226	0.99	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
RAI14	26064	broad.mit.edu	36	5	34860034	34860034	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	34860034	34860034	C	T	SNP	RAI14	NM_015577	human	genbank	54_36p	1	validated	missense	c.2330	p.A777V	0.88	NULL	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
PRLR	5618	broad.mit.edu	36	5	35106079	35106079	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	35106079	35106079	G	A	SNP	PRLR	NM_000949	human	genbank	54_36p	-1	validated	missense	c.589	p.H197Y	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F1"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F1"	-	no_errors
IL7R	3575	broad.mit.edu	36	5	35896794	35896794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	5	35896794	35896794	A	T	SNP	IL7R	NM_002185	human	genbank	54_36p	1	reviewed	missense	c.166	p.T56S	0.64	NULL	"superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
UGT3A1	133688	broad.mit.edu	36	5	36001288	36001288	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	36001288	36001288	T	C	SNP	UGT3A1	NM_152404	human	genbank	54_36p	-1	provisional	missense	c.800	p.Y267C	0.95	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT"	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT"	-	no_errors
SKP2	6502	broad.mit.edu	36	5	36212823	36212823	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	36212823	36212823	G	C	SNP	SKP2	NM_005983	human	genbank	54_36p	1	reviewed	splice_site	c.902-1	e8-1	0.9	-	-	-	no_errors
C5orf33	133686	broad.mit.edu	36	5	36233495	36233495	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	36233495	36233495	G	A	SNP	C5orf33	NM_001085411	human	genbank	54_36p	-1	validated	silent	c.1095	p.L365	1	NULL	"superfamily_NAD kinase (Pfam 01513),HMMPfam_NAD_kinase"	-	no_errors
NIPBL	25836	broad.mit.edu	36	5	37021621	37021621	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	37021621	37021621	C	A	SNP	NIPBL	NM_133433	human	genbank	54_36p	1	reviewed	nonsense	c.2582	p.S861*	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
C5orf42	65250	broad.mit.edu	36	5	37234612	37234612	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	37234612	37234612	T	A	SNP	C5orf42	NM_023073	human	genbank	54_36p	-1	predicted	silent	c.264	p.V88	0.89	NULL	NULL	-	no_errors
NUP155	9631	broad.mit.edu	36	5	37353868	37353868	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	37353868	37353868	C	A	SNP	NUP155	NM_153485	human	genbank	54_36p	-1	reviewed	nonsense	c.2284	p.E762*	1	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors
WDR70	55100	broad.mit.edu	36	5	37515767	37515767	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	37515767	37515767	A	T	SNP	WDR70	NM_018034	human	genbank	54_36p	1	provisional	missense	c.761	p.K254M	1	"superfamily_WD40_like,HMMSmart_WD40"	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LIFR	3977	broad.mit.edu	36	5	38546409	38546409	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	38546409	38546409	C	T	SNP	LIFR	NM_002310	human	genbank	54_36p	-1	reviewed	missense	c.905	p.R302H	0	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
LIFR	3977	broad.mit.edu	36	5	38559435	38559435	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	38559435	38559435	A	T	SNP	LIFR	NM_002310	human	genbank	54_36p	-1	reviewed	missense	c.404	p.I135N	1	superfamily_Fibronectin type III	"PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	-	no_errors
OSMR	9180	broad.mit.edu	36	5	38969209	38969209	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	38969209	38969209	T	C	SNP	OSMR	NM_003999	human	genbank	54_36p	1	reviewed	missense	c.2846	p.M949T	1	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2"	-	no_errors
RICTOR	253260	broad.mit.edu	36	5	38983252	38983252	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	38983252	38983252	C	T	SNP	RICTOR	NM_152756	human	genbank	54_36p	-1	validated	silent	c.4185	p.L1395	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_RasGEF_N"	-	no_errors
RICTOR	253260	broad.mit.edu	36	5	38985589	38985589	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	38985589	38985589	G	A	SNP	RICTOR	NM_152756	human	genbank	54_36p	-1	validated	missense	c.4118	p.S1373F	1	superfamily_ARM repeat	"HMMPfam_RasGEF_N,superfamily_ARM repeat"	-	no_errors
RICTOR	253260	broad.mit.edu	36	5	38988275	38988275	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	38988275	38988275	T	C	SNP	RICTOR	NM_152756	human	genbank	54_36p	-1	validated	silent	c.2907	p.V969	0.98	superfamily_ARM repeat	"HMMPfam_RasGEF_N,superfamily_ARM repeat"	-	no_errors
FYB	2533	broad.mit.edu	36	5	39170747	39170747	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	39170747	39170747	C	A	SNP	FYB	NM_001465	human	genbank	54_36p	-1	validated	nonsense	c.1642	p.G548*	1	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	"PatternScan_XYLOSE_ISOMERASE_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
CARD6	84674	broad.mit.edu	36	5	40879379	40879379	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	5	40879379	40879379	G	T	SNP	CARD6	NM_032587	human	genbank	54_36p	1	reviewed	missense	c.652	p.V218F	0	NULL	"superfamily_DEATH_like,HMMPfam_CARD"	-	no_errors
C7	730	broad.mit.edu	36	5	41000604	41000604	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	41000604	41000604	A	C	SNP	C7	NM_000587	human	genbank	54_36p	1	reviewed	missense	c.1754	p.E585A	0.68	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	###############################################################################################################################################################################################################################################################	-	no_errors
C7	730	broad.mit.edu	36	5	41012639	41012639	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	41012639	41012639	G	A	SNP	C7	NM_000587	human	genbank	54_36p	1	reviewed	missense	c.2105	p.C702Y	1	HMMSmart_FIMAC	###############################################################################################################################################################################################################################################################	-	no_errors
C7	730	broad.mit.edu	36	5	41017274	41017274	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	41017274	41017274	C	T	SNP	C7	NM_000587	human	genbank	54_36p	1	reviewed	nonsense	c.2374	p.R792*	0.26	HMMSmart_FIMAC	###############################################################################################################################################################################################################################################################	-	no_errors
HEATR7B2	133558	broad.mit.edu	36	5	41068912	41068912	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	41068912	41068912	A	T	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	silent	c.2349	p.I783	0.39	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
HEATR7B2	133558	broad.mit.edu	36	5	41074650	41074650	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	41074650	41074650	C	G	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	missense	c.2159	p.R720T	0.02	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
HEATR7B2	133558	broad.mit.edu	36	5	41084285	41084285	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	41084285	41084285	C	G	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	missense	c.1582	p.A528P	0.79	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
HEATR7B2	133558	broad.mit.edu	36	5	41085273	41085273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	41085273	41085273	G	T	SNP	HEATR7B2	NM_173489	human	genbank	54_36p	-1	validated	missense	c.1367	p.T456N	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
PLCXD3	345557	broad.mit.edu	36	5	41417998	41417998	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	41417998	41417998	C	T	SNP	PLCXD3	NM_001005473	human	genbank	54_36p	-1	validated	missense	c.499	p.G167R	1	superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
PLCXD3	345557	broad.mit.edu	36	5	41546284	41546284	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	41546284	41546284	T	A	SNP	PLCXD3	NM_001005473	human	genbank	54_36p	-1	validated	silent	c.102	p.P34	1	superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors
GHR	2690	broad.mit.edu	36	5	42754535	42754535	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	42754535	42754535	G	C	SNP	GHR	NM_000163	human	genbank	54_36p	1	reviewed	missense	c.1169	p.C390S	1	NULL	"superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F1"	-	no_errors
MGC42105	167359	broad.mit.edu	36	5	43316048	43316048	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	43316048	43316048	G	C	SNP	MGC42105	NM_153361	human	genbank	54_36p	1	provisional	missense	c.771	p.L257F	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CCL28	56477	broad.mit.edu	36	5	43417739	43417739	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	43417739	43417739	C	T	SNP	CCL28	NM_148672	human	genbank	54_36p	-1	reviewed	missense	c.364	p.G122S	0	NULL	"superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CC"	-	no_errors
C5orf34	375444	broad.mit.edu	36	5	43544461	43544461	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	43544461	43544461	G	C	SNP	C5orf34	NM_198566	human	genbank	54_36p	-1	predicted	missense	c.260	p.T87S	1	NULL	NULL	-	no_errors
PAIP1	10605	broad.mit.edu	36	5	43574851	43574851	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	43574851	43574851	C	A	SNP	PAIP1	NM_006451	human	genbank	54_36p	-1	reviewed	missense	c.778	p.D260Y	1	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543"	"HMMPfam_PAM2,superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543"	-	no_errors
NNT	23530	broad.mit.edu	36	5	43691814	43691814	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	43691814	43691814	A	T	SNP	NNT	NM_012343	human	genbank	54_36p	1	reviewed	missense	c.2175	p.E725D	1	HMMPfam_PNTB	"superfamily_SSF52283,PatternScan_ALADH_PNT_1,HMMPfam_AlaDh_PNT_N,superfamily_NAD(P)-bd,HMMPfam_AlaDh_PNT_C,PatternScan_ALADH_PNT_2,HMMPfam_PNTB,superfamily_SSF52467"	-	no_errors
NNT	23530	broad.mit.edu	36	5	43711491	43711491	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	43711491	43711491	A	T	SNP	NNT	NM_012343	human	genbank	54_36p	1	reviewed	missense	c.2756	p.D919V	1	"HMMPfam_PNTB,superfamily_SSF52467"	"HMMPfam_PNTB,HMMPfam_AlaDh_PNT_C,HMMPfam_AlaDh_PNT_N,PatternScan_ALADH_PNT_1,PatternScan_ALADH_PNT_2,superfamily_NAD(P)-bd,superfamily_SSF52283,superfamily_SSF52467"	-	no_errors
PARP8	79668	broad.mit.edu	36	5	50164406	50164406	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	50164406	50164406	C	T	SNP	PARP8	NM_024615	human	genbank	54_36p	1	provisional	silent	c.2268	p.D756	1	"superfamily_ADP-ribosylation,HMMPfam_PARP"	"superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
ISL1	3670	broad.mit.edu	36	5	50721518	50721518	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	50721518	50721518	A	G	SNP	ISL1	NM_002202	human	genbank	54_36p	1	reviewed	missense	c.760	p.K254E	1	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PELO	53918	broad.mit.edu	36	5	52132066	52132066	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	52132066	52132066	G	A	SNP	PELO	NM_015946	human	genbank	54_36p	1	reviewed	nonsense	c.81	p.W27*	1	HMMPfam_eRF1_1	"HMMPfam_eRF1_1,HMMPfam_eRF1_2,superfamily_L30e-like,HMMPfam_eRF1_3"	-	no_errors
ITGA1	3672	broad.mit.edu	36	5	52219427	52219427	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	52219427	52219427	G	A	SNP	ITGA1	NM_181501	human	genbank	54_36p	1	reviewed	missense	c.797	p.R266Q	1	"superfamily_SSF69318,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	"superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA"	-	no_errors
ARL15	54622	broad.mit.edu	36	5	53642036	53642036	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	53642036	53642036	G	C	SNP	ARL15	NM_019087	human	genbank	54_36p	-1	validated	missense	c.31	p.L11V	1	NULL	"HMMPfam_Arf,superfamily_SSF52540"	-	no_errors
GZMA	3001	broad.mit.edu	36	5	54437145	54437145	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	54437145	54437145	A	T	SNP	GZMA	NM_006144	human	genbank	54_36p	1	reviewed	missense	c.157	p.I53F	0.01	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases"	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
DHX29	54505	broad.mit.edu	36	5	54628947	54628947	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	54628947	54628947	C	G	SNP	DHX29	NM_019030	human	genbank	54_36p	-1	validated	missense	c.298	p.G100R	1	NULL	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
SKIV2L2	23517	broad.mit.edu	36	5	54729004	54729004	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	54729004	54729004	G	C	SNP	SKIV2L2	NM_015360	human	genbank	54_36p	1	validated	missense	c.2185	p.V729L	1	NULL	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DSHCT"	-	no_errors
DDX4	54514	broad.mit.edu	36	5	55070580	55070580	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	55070580	55070580	A	C	SNP	DDX4	NM_024415	human	genbank	54_36p	1	validated	missense	c.32	p.N11T	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
IL31RA	133396	broad.mit.edu	36	5	55248398	55248398	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	55248398	55248398	A	G	SNP	IL31RA	NM_139017	human	genbank	54_36p	1	validated	missense	c.1988	p.N663S	0.02	NULL	"HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3"	-	no_errors
ANKRD55	79722	broad.mit.edu	36	5	55434103	55434103	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	55434103	55434103	G	T	SNP	ANKRD55	NM_024669	human	genbank	54_36p	-1	validated	missense	c.1698	p.N566K	1	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
MAP3K1	4214	broad.mit.edu	36	5	56217522	56217522	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	56217522	56217522	C	T	SNP	MAP3K1	NM_005921	human	genbank	54_36p	1	validated	missense	c.3989	p.S1330L	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
GPBP1	65056	broad.mit.edu	36	5	56562771	56562771	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	56562771	56562771	G	A	SNP	GPBP1	NM_022913	human	genbank	54_36p	1	validated	missense	c.277	p.G93R	1	NULL	NULL	-	no_errors
ACTBL2	345651	broad.mit.edu	36	5	56813689	56813689	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	56813689	56813689	G	T	SNP	ACTBL2	NM_001017992	human	genbank	54_36p	-1	validated	missense	c.603	p.F201L	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
ACTBL2	345651	broad.mit.edu	36	5	56813808	56813808	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	56813808	56813808	G	T	SNP	ACTBL2	NM_001017992	human	genbank	54_36p	-1	validated	missense	c.484	p.H162N	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain"	-	no_errors
PLK2	10769	broad.mit.edu	36	5	57787629	57787629	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	57787629	57787629	G	C	SNP	PLK2	NM_006622	human	genbank	54_36p	-1	validated	missense	c.1365	p.S455R	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF82615,HMMPfam_POLO_box"	-	no_errors
DEPDC1B	55789	broad.mit.edu	36	5	60018679	60018679	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	5	60018679	60018679	G	T	SNP	DEPDC1B	NM_018369	human	genbank	54_36p	-1	validated	missense	c.181	p.Q61K	1	"superfamily_Winged helix DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	"superfamily_Winged helix DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_GTPase activation domain GAP,HMMPfam_RhoGAP"	-	no_errors
NDUFAF2	91942	broad.mit.edu	36	5	60276887	60276887	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	60276887	60276887	A	T	SNP	NDUFAF2	NM_174889	human	genbank	54_36p	1	reviewed	silent	c.48	p.S16	0.74	NULL	HMMPfam_NDUFA12	-	no_errors
KIF2A	3796	broad.mit.edu	36	5	61704091	61704091	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	61704091	61704091	C	T	SNP	KIF2A	NM_001098511	human	genbank	54_36p	1	validated	silent	c.1716	p.L572	1	NULL	"superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
HTR1A	3350	broad.mit.edu	36	5	63293124	63293124	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	63293124	63293124	G	A	SNP	HTR1A	NM_000524	human	genbank	54_36p	-1	validated	missense	c.179	p.A60V	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TRIM23	373	broad.mit.edu	36	5	64928093	64928093	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	64928093	64928093	T	G	SNP	TRIM23	NM_001656	human	genbank	54_36p	-1	reviewed	missense	c.1331	p.E444A	1	"HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	###############################################################################################################################################################################################################################################################	-	no_errors
ERBB2IP	55914	broad.mit.edu	36	5	65352971	65352971	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	65352971	65352971	T	A	SNP	ERBB2IP	NM_018695	human	genbank	54_36p	1	reviewed	splice_site	c.597+2	e6+2	1	-	-	-	no_errors
MAST4	375449	broad.mit.edu	36	5	66120331	66120331	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	66120331	66120331	C	T	SNP	MAST4	NM_198828	human	genbank	54_36p	1	validated	missense	c.595	p.R199C	1	NULL	NULL	-	no_errors
MAST4	375449	broad.mit.edu	36	5	66386056	66386056	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	5	66386056	66386056	C	T	SNP	MAST4	NM_015183	human	genbank	54_36p	1	validated	missense	c.176	p.S59L	1	NULL	"HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
MAST4	375449	broad.mit.edu	36	5	66484432	66484432	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	5	66484432	66484432	A	T	SNP	MAST4	NM_015183	human	genbank	54_36p	1	validated	silent	c.2940	p.T980	0.06	"HMMSmart_PDZ,superfamily_PDZ"	"HMMSmart_S_TK_X,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
MAST4	375449	broad.mit.edu	36	5	66495310	66495310	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	66495310	66495310	G	A	SNP	MAST4	NM_015183	human	genbank	54_36p	1	validated	missense	c.3980	p.R1327Q	0.95	NULL	"HMMSmart_S_TK_X,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
TAF9	6880	broad.mit.edu	36	5	68701055	68701055	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	68701055	68701055	G	C	SNP	TAF9	NM_016283	human	genbank	54_36p	-1	validated	missense	c.19	p.L7V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA"	-	no_errors
CARTPT	9607	broad.mit.edu	36	5	71051001	71051001	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	71051001	71051001	C	T	SNP	CARTPT	ENST00000296777	human	ensembl	54_36p	1	known	missense	c.125	p.S42F	1	HMMPfam_CART	"HMMPfam_CART,superfamily_Satiety factor CART (cocaine and amphetamine regulated transcript)"	-	mismatch_between_exon_seq_and_reference
TNPO1	3842	broad.mit.edu	36	5	72204229	72204229	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	72204229	72204229	G	A	SNP	TNPO1	NM_002270	human	genbank	54_36p	1	reviewed	missense	c.604	p.A202T	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_HEAT"	-	no_errors
FCHO2	115548	broad.mit.edu	36	5	72400306	72400306	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	72400306	72400306	G	T	SNP	FCHO2	NM_138782	human	genbank	54_36p	1	provisional	missense	c.1523	p.S508I	1	NULL	"HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SAFF"	-	no_errors
NSA2	10412	broad.mit.edu	36	5	74102274	74102274	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	74102274	74102274	T	C	SNP	TINP1	NM_014886	human	genbank	54_36p	1	provisional	silent	c.405	p.V135	0.99	HMMPfam_Ribosomal_S8e	HMMPfam_Ribosomal_S8e	-	no_errors
GCNT4	51301	broad.mit.edu	36	5	74360422	74360422	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	74360422	74360422	C	A	SNP	GCNT4	NM_016591	human	genbank	54_36p	-1	validated	missense	c.1197	p.R399S	1	NULL	HMMPfam_Branch	-	no_errors
POLK	51426	broad.mit.edu	36	5	74884060	74884060	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	74884060	74884060	G	T	SNP	POLK	NM_016218	human	genbank	54_36p	1	validated	missense	c.143	p.R48I	1	NULL	"superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain,HMMSmart_SM00734"	-	no_errors
POLK	51426	broad.mit.edu	36	5	74900959	74900959	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	74900959	74900959	T	C	SNP	POLK	NM_016218	human	genbank	54_36p	1	validated	silent	c.294	p.N98	1	superfamily_DNA/RNA polymerases	"HMMPfam_IMS,HMMSmart_SM00734,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain,superfamily_DNA/RNA polymerases"	-	no_errors
IQGAP2	10788	broad.mit.edu	36	5	75902200	75902200	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	75902200	75902200	C	T	SNP	IQGAP2	NM_006633	human	genbank	54_36p	1	validated	nonsense	c.343	p.Q115*	1	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	###############################################################################################################################################################################################################################################################	-	no_errors
IQGAP2	10788	broad.mit.edu	36	5	76006216	76006216	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	76006216	76006216	C	G	SNP	IQGAP2	NM_006633	human	genbank	54_36p	1	validated	missense	c.3453	p.N1151K	1	"HMMSmart_SM00323,superfamily_GTPase activation domain GAP"	###############################################################################################################################################################################################################################################################	-	no_errors
IQGAP2	10788	broad.mit.edu	36	5	76015371	76015371	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	76015371	76015371	G	A	SNP	IQGAP2	NM_006633	human	genbank	54_36p	1	validated	missense	c.3778	p.D1260N	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
IQGAP2	10788	broad.mit.edu	36	5	76024953	76024953	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	76024953	76024953	T	C	SNP	IQGAP2	NM_006633	human	genbank	54_36p	1	validated	missense	c.3923	p.I1308T	0.98	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
IQGAP2	10788	broad.mit.edu	36	5	76032686	76032686	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	76032686	76032686	G	C	SNP	IQGAP2	NM_006633	human	genbank	54_36p	1	validated	missense	c.4397	p.G1466A	1	HMMPfam_RasGAP_C	###############################################################################################################################################################################################################################################################	-	no_errors
S100Z	170591	broad.mit.edu	36	5	76206977	76206977	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	76206977	76206977	A	G	SNP	S100Z	NM_130772	human	genbank	54_36p	1	validated	missense	c.37	p.I13V	1	"superfamily_EF-hand,HMMPfam_S_100"	"superfamily_EF-hand,HMMPfam_S_100,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1"	-	no_errors
TBCA	6902	broad.mit.edu	36	5	77024899	77024899	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	77024899	77024899	G	C	SNP	TBCA	NM_004607	human	genbank	54_36p	-1	reviewed	missense	c.194	p.P65R	1	"superfamily_Tubulin chaperone cofactor A,HMMPfam_TBCA"	"superfamily_Tubulin chaperone cofactor A,HMMPfam_TBCA"	-	no_errors
DMGDH	29958	broad.mit.edu	36	5	78358071	78358071	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	78358071	78358071	C	G	SNP	DMGDH	NM_013391	human	genbank	54_36p	-1	reviewed	missense	c.2122	p.D708H	1	"superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain"	-	no_errors
DMGDH	29958	broad.mit.edu	36	5	78395229	78395229	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	78395229	78395229	T	C	SNP	DMGDH	NM_013391	human	genbank	54_36p	-1	reviewed	missense	c.239	p.E80G	1	"HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_DAO,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain,superfamily_Aminomethyltransferase folate-binding domain,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
CMYA5	202333	broad.mit.edu	36	5	79065129	79065129	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	79065129	79065129	A	T	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	silent	c.4785	p.A1595	0	NULL	"superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY"	-	no_errors
CMYA5	202333	broad.mit.edu	36	5	79069509	79069509	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	79069509	79069509	A	G	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	silent	c.9165	p.K3055	1	NULL	"HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
CMYA5	202333	broad.mit.edu	36	5	79069609	79069609	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	79069609	79069609	G	T	SNP	CMYA5	NM_153610	human	genbank	54_36p	1	validated	nonsense	c.9265	p.E3089*	0.09	NULL	"HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
THBS4	7060	broad.mit.edu	36	5	79404846	79404858	+	Splice_Site	DEL	CTTTGCAGTCTGA	-	CTTTGCAGTCTGA	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	CTTTGCAGTCTGA	CTTTGCAGTCTGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	79404846	79404858	CTTTGCAGTCTGA	-	DEL	THBS4	NM_003248	human	genbank	54_36p	1	reviewed	splice_site_del	c.1840-8_1840-1	e15-1	0.950:0.970:0.963:0.964:0.971:0.998:1.000:1.000:1.000:0.999:0.817:1.000:1.000	-	-	"(deletion:intron[79403976,79404853], cds_exon[79404854,79404906])"	no_errors
SERINC5	256987	broad.mit.edu	36	5	79482464	79482464	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	79482464	79482464	C	A	SNP	SERINC5	NM_178276	human	genbank	54_36p	-1	validated	missense	c.1050	p.L350F	0.99	HMMPfam_Serinc	"HMMPfam_Serinc,PatternScan_2FE2S_FER_1"	-	no_errors
SPZ1	84654	broad.mit.edu	36	5	79652841	79652841	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	79652841	79652841	G	C	SNP	SPZ1	NM_032567	human	genbank	54_36p	1	provisional	missense	c.1051	p.E351Q	0	NULL	NULL	-	no_errors
MSH3	4437	broad.mit.edu	36	5	80003900	80003900	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	80003900	80003900	G	C	SNP	MSH3	NM_002439	human	genbank	54_36p	1	validated	missense	c.874	p.V292L	1	"superfamily_DNA repair protein MutS domain I,HMMPfam_MutS_I"	###############################################################################################################################################################################################################################################################	-	no_errors
RASGRF2	5924	broad.mit.edu	36	5	80399737	80399737	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	80399737	80399737	G	A	SNP	RASGRF2	NM_006909	human	genbank	54_36p	1	validated	missense	c.526	p.E176K	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
RASGRF2	5924	broad.mit.edu	36	5	80445146	80445146	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	80445146	80445146	C	A	SNP	RASGRF2	NM_006909	human	genbank	54_36p	1	validated	missense	c.2121	p.N707K	1	"HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF"	"HMMPfam_IQ,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_PH domain-like"	-	no_errors
RASGRF2	5924	broad.mit.edu	36	5	80544101	80544101	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	80544101	80544101	A	T	SNP	RASGRF2	NM_006909	human	genbank	54_36p	1	validated	missense	c.3317	p.Y1106F	1	"HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF"	"HMMPfam_IQ,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF,superfamily_PH domain-like"	-	no_errors
ACOT12	134526	broad.mit.edu	36	5	80725571	80725571	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	80725571	80725571	C	A	SNP	ACOT12	NM_130767	human	genbank	54_36p	-1	validated	missense	c.119	p.C40F	1	"superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT"	"superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT,superfamily_Bet v1-like,HMMPfam_START"	-	no_errors
VCAN	1462	broad.mit.edu	36	5	82870305	82870305	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	82870305	82870305	A	G	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	silent	c.5727	p.S1909	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VCAN	1462	broad.mit.edu	36	5	82871373	82871373	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	82871373	82871373	T	C	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	silent	c.6795	p.T2265	0.01	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VCAN	1462	broad.mit.edu	36	5	82872631	82872631	+	Missense_Mutation	SNP	G	G	A	rs59948995	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	82872631	82872631	G	A	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	missense	c.8053	p.V2685I	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
VCAN	1462	broad.mit.edu	36	5	82873282	82873282	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	82873282	82873282	G	C	SNP	VCAN	NM_004385	human	genbank	54_36p	1	validated	missense	c.8704	p.E2902Q	0.47	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EDIL3	10085	broad.mit.edu	36	5	83438390	83438390	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	83438390	83438390	G	T	SNP	EDIL3	NM_005711	human	genbank	54_36p	-1	reviewed	missense	c.484	p.L162M	0.27	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
RASA1	5921	broad.mit.edu	36	5	86708052	86708052	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	86708052	86708052	G	T	SNP	RASA1	NM_002890	human	genbank	54_36p	1	reviewed	missense	c.2098	p.G700C	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00323"	###############################################################################################################################################################################################################################################################	-	no_errors
MEF2C	4208	broad.mit.edu	36	5	88063386	88063386	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	88063386	88063386	G	T	SNP	MEF2C	NM_002397	human	genbank	54_36p	-1	validated	silent	c.726	p.P242	1	NULL	"HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF"	-	no_errors
GPR98	84059	broad.mit.edu	36	5	90026254	90026254	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	90026254	90026254	A	T	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.7925	p.E2642V	0.99	"HMMSmart_SM00237,HMMPfam_Calx-beta"	"HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS"	-	no_errors
GPR98	84059	broad.mit.edu	36	5	90108038	90108038	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	90108038	90108038	T	A	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	missense	c.12416	p.I4139K	0.21	NULL	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
GPR98	84059	broad.mit.edu	36	5	90142094	90142094	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	90142094	90142094	A	G	SNP	GPR98	NM_032119	human	genbank	54_36p	1	reviewed	silent	c.15261	p.E5087	0.97	"HMMPfam_Calx-beta,HMMSmart_SM00237"	"HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
ANKRD32	84250	broad.mit.edu	36	5	94048166	94048166	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	94048166	94048166	C	G	SNP	ANKRD32	NM_032290	human	genbank	54_36p	1	validated	missense	c.200	p.S67C	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
ANKRD32	84250	broad.mit.edu	36	5	94056760	94056760	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	94056760	94056760	T	C	SNP	ANKRD32	NM_032290	human	genbank	54_36p	1	validated	missense	c.1256	p.M419T	0.8	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
MCTP1	79772	broad.mit.edu	36	5	94072289	94072289	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	5	94072289	94072289	G	C	SNP	MCTP1	NM_024717	human	genbank	54_36p	-1	validated	silent	c.2820	p.V940	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
MCTP1	79772	broad.mit.edu	36	5	94270719	94270719	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	94270719	94270719	T	G	SNP	MCTP1	NM_024717	human	genbank	54_36p	-1	validated	missense	c.1645	p.I549L	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
FAM81B	153643	broad.mit.edu	36	5	94811667	94811667	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	94811667	94811667	G	A	SNP	FAM81B	NM_152548	human	genbank	54_36p	1	validated	missense	c.1284	p.M428I	1	NULL	NULL	-	no_errors
CAST	831	broad.mit.edu	36	5	96104194	96104194	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	96104194	96104194	G	A	SNP	CAST	NM_001750	human	genbank	54_36p	1	reviewed	missense	c.1178	p.R393H	0.01	HMMPfam_Calpain_inhib	HMMPfam_Calpain_inhib	-	no_errors
CAST	831	broad.mit.edu	36	5	96105106	96105106	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	96105106	96105106	C	G	SNP	CAST	NM_173061	human	genbank	54_36p	1	reviewed	missense	c.20	p.S7W	0.13	NULL	HMMPfam_Calpain_inhib	-	no_errors
LNPEP	4012	broad.mit.edu	36	5	96340696	96340696	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	96340696	96340696	G	T	SNP	LNPEP	NM_005575	human	genbank	54_36p	1	reviewed	nonsense	c.118	p.E40*	1	NULL	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,PatternScan_SUBTILASE_ASP,PatternScan_COF_1,superfamily_Metalloproteases (zincins) catalytic domain,PatternScan_ZINC_PROTEASE"	-	no_errors
LNPEP	4012	broad.mit.edu	36	5	96354552	96354552	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	96354552	96354552	T	C	SNP	LNPEP	NM_005575	human	genbank	54_36p	1	reviewed	silent	c.1209	p.F403	1	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (zincins) catalytic domain"	"PatternScan_COF_1,PatternScan_SUBTILASE_ASP,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (zincins) catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors
LNPEP	4012	broad.mit.edu	36	5	96359496	96359496	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	96359496	96359496	G	T	SNP	LNPEP	NM_005575	human	genbank	54_36p	1	reviewed	missense	c.1544	p.R515L	0.51	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (zincins) catalytic domain"	"PatternScan_COF_1,PatternScan_SUBTILASE_ASP,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (zincins) catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors
SLCO6A1	133482	broad.mit.edu	36	5	101783449	101783449	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	101783449	101783449	C	T	SNP	SLCO6A1	NM_173488	human	genbank	54_36p	-1	validated	silent	c.1452	p.G484	0.02	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	"HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
SLCO6A1	133482	broad.mit.edu	36	5	101862268	101862268	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	101862268	101862268	C	A	SNP	SLCO6A1	NM_173488	human	genbank	54_36p	-1	validated	missense	c.180	p.R60S	0	NULL	"HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors"	-	no_errors
GIN1	54826	broad.mit.edu	36	5	102451740	102451740	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	102451740	102451740	C	G	SNP	GIN1	NM_017676	human	genbank	54_36p	-1	validated	missense	c.1330	p.D444H	1	NULL	"HMMPfam_zf-H2C2,superfamily_Ribonuclease H-like,HMMPfam_rve"	-	no_errors
PPIP5K2	23262	broad.mit.edu	36	5	102546985	102546985	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	102546985	102546985	G	A	SNP	HISPPD1	NM_015216	human	genbank	54_36p	1	provisional	missense	c.3074	p.S1025N	1	NULL	"superfamily_SSF56059,superfamily_SSF53254,HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1"	-	no_errors
PJA2	9867	broad.mit.edu	36	5	108745197	108745197	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	108745197	108745197	T	G	SNP	PJA2	NM_014819	human	genbank	54_36p	-1	validated	missense	c.138	p.K46N	1	NULL	"PatternScan_N6_MTASE,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
MAN2A1	4124	broad.mit.edu	36	5	109131253	109131253	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	109131253	109131253	T	C	SNP	MAN2A1	NM_002372	human	genbank	54_36p	1	reviewed	silent	c.954	p.V318	0.92	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
WDR36	134430	broad.mit.edu	36	5	110474532	110474532	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	110474532	110474532	A	G	SNP	WDR36	NM_139281	human	genbank	54_36p	1	reviewed	missense	c.1756	p.M586V	0.54	superfamily_WD40_like	"superfamily_Amine_DH_B_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_Utp21"	-	no_errors
CAMK4	814	broad.mit.edu	36	5	110847627	110847627	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	110847627	110847627	C	A	SNP	CAMK4	NM_001744	human	genbank	54_36p	1	reviewed	missense	c.986	p.A329E	0.99	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
STARD4	134429	broad.mit.edu	36	5	110865598	110865598	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	110865598	110865598	G	T	SNP	STARD4	NM_139164	human	genbank	54_36p	-1	provisional	missense	c.243	p.S81R	1	"superfamily_SSF55961,HMMPfam_START"	"superfamily_SSF55961,HMMPfam_START"	-	no_errors
EPB41L4A	64097	broad.mit.edu	36	5	111532600	111532600	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	111532600	111532600	G	A	SNP	EPB41L4A	NM_022140	human	genbank	54_36p	-1	validated	missense	c.1841	p.S614L	1	NULL	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA"	-	no_errors
APC	324	broad.mit.edu	36	5	112198581	112198581	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	112198581	112198581	G	T	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.1778	p.W593L	1	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding"	-	no_errors
APC	324	broad.mit.edu	36	5	112203476	112203476	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	112203476	112203476	A	G	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.4286	p.Q1429R	1	NULL	"HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat"	-	no_errors
APC	324	broad.mit.edu	36	5	112204836	112204836	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	112204836	112204836	A	T	SNP	APC	NM_000038	human	genbank	54_36p	1	reviewed	missense	c.5646	p.R1882S	1	NULL	"HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat"	-	no_errors
REEP5	7905	broad.mit.edu	36	5	112266101	112266101	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	112266101	112266101	C	T	SNP	REEP5	NM_005669	human	genbank	54_36p	-1	validated	missense	c.226	p.E76K	1	HMMPfam_TB2_DP1_HVA22	HMMPfam_TB2_DP1_HVA22	-	no_errors
MCC	4163	broad.mit.edu	36	5	112514990	112514990	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	112514990	112514990	T	A	SNP	MCC	NM_001085377	human	genbank	54_36p	-1	reviewed	missense	c.656	p.K219M	1	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_MCC-bdg_PDZ"	-	no_errors
TSSK1B	83942	broad.mit.edu	36	5	112797741	112797741	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	112797741	112797741	C	T	SNP	TSSK1B	NM_032028	human	genbank	54_36p	-1	provisional	missense	c.695	p.R232H	0.65	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
KCNN2	3781	broad.mit.edu	36	5	113768427	113768427	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	113768427	113768427	G	A	SNP	KCNN2	NM_021614	human	genbank	54_36p	1	reviewed	missense	c.976	p.A326T	1	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	"HMMPfam_SK_channel,superfamily_SSF81324,HMMPfam_Ion_trans_2,superfamily_CaM_bd,HMMPfam_CaMBD"	-	no_errors
KCNN2	3781	broad.mit.edu	36	5	113836687	113836687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	113836687	113836687	C	T	SNP	KCNN2	NM_021614	human	genbank	54_36p	1	reviewed	missense	c.1181	p.A394V	1	"HMMPfam_Ion_trans_2,superfamily_SSF81324"	"HMMPfam_CaMBD,superfamily_CaM_bd,HMMPfam_SK_channel,HMMPfam_Ion_trans_2,superfamily_SSF81324"	-	no_errors
TRIM36	55521	broad.mit.edu	36	5	114497487	114497487	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	114497487	114497487	T	C	SNP	TRIM36	NM_018700	human	genbank	54_36p	-1	reviewed	silent	c.1503	p.R501	0.93	superfamily_Fibronectin type III	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
TRIM36	55521	broad.mit.edu	36	5	114497705	114497705	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	114497705	114497705	C	T	SNP	TRIM36	NM_018700	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.V429I	0.92	NULL	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_fn3,superfamily_Fibronectin type III,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box"	-	no_errors
TNFAIP8	25816	broad.mit.edu	36	5	118756677	118756677	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	118756677	118756677	A	C	SNP	TNFAIP8	NM_014350	human	genbank	54_36p	1	validated	missense	c.299	p.E100A	1	HMMPfam_DUF758	HMMPfam_DUF758	-	no_errors
HSD17B4	3295	broad.mit.edu	36	5	118863133	118863133	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	118863133	118863133	A	G	SNP	HSD17B4	NM_000414	human	genbank	54_36p	1	reviewed	missense	c.1195	p.I399V	0.79	superfamily_SSF54637	"superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_SSF54637,HMMPfam_MaoC_dehydratas,superfamily_SCP2,HMMPfam_SCP2"	-	no_errors
FTMT	94033	broad.mit.edu	36	5	121215735	121215735	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	121215735	121215735	G	T	SNP	FTMT	NM_177478	human	genbank	54_36p	1	validated	missense	c.178	p.G60W	0	NULL	"PatternScan_FERRITIN_1,superfamily_Ferritin/RR_like,HMMPfam_Ferritin,PatternScan_FERRITIN_2"	-	no_errors
SNCAIP	9627	broad.mit.edu	36	5	121789106	121789106	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	121789106	121789106	C	T	SNP	SNCAIP	NM_005460	human	genbank	54_36p	1	reviewed	missense	c.1163	p.P388L	1	"superfamily_ANK,HMMSmart_ANK"	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	-	no_errors
PPIC	5480	broad.mit.edu	36	5	122389422	122389422	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	122389422	122389422	A	C	SNP	PPIC	NM_000943	human	genbank	54_36p	-1	reviewed	missense	c.466	p.L156V	0.99	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase"	"superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
CEP120	153241	broad.mit.edu	36	5	122752141	122752141	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	122752141	122752141	T	C	SNP	CEP120	NM_153223	human	genbank	54_36p	-1	validated	silent	c.1314	p.E438	0.14	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
ZNF608	57507	broad.mit.edu	36	5	124012540	124012540	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	124012540	124012540	C	T	SNP	ZNF608	NM_020747	human	genbank	54_36p	-1	validated	missense	c.1436	p.R479Q	1	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ALDH7A1	501	broad.mit.edu	36	5	125915628	125915628	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	125915628	125915628	T	C	SNP	ALDH7A1	NM_001182	human	genbank	54_36p	-1	reviewed	missense	c.1217	p.Y406C	1	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh"	"PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU"	-	no_errors
C5orf48	389320	broad.mit.edu	36	5	125999734	125999734	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	125999734	125999734	C	G	SNP	C5orf48	NM_207408	human	genbank	54_36p	1	predicted	missense	c.307	p.P103A	0.33	NULL	NULL	-	no_errors
LMNB1	4001	broad.mit.edu	36	5	126196373	126196373	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	126196373	126196373	A	G	SNP	LMNB1	NM_005573	human	genbank	54_36p	1	reviewed	missense	c.1700	p.E567G	0.96	NULL	"HMMPfam_Filament,PatternScan_IF,superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	-	no_errors
FBN2	2201	broad.mit.edu	36	5	127652801	127652801	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	127652801	127652801	C	T	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	missense	c.6554	p.G2185D	1	"superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN2	2201	broad.mit.edu	36	5	127672948	127672948	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	127672948	127672948	G	A	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	missense	c.5243	p.T1748I	0.99	"HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN2	2201	broad.mit.edu	36	5	127713044	127713044	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	127713044	127713044	C	T	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	silent	c.2883	p.V961	1	"HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN2	2201	broad.mit.edu	36	5	127738240	127738240	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	127738240	127738240	A	T	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	missense	c.2075	p.M692K	1	"HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN2	2201	broad.mit.edu	36	5	127738326	127738326	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	127738326	127738326	C	T	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	silent	c.1989	p.Q663	1	"HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN2	2201	broad.mit.edu	36	5	127740396	127740396	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	127740396	127740396	G	A	SNP	FBN2	NM_001999	human	genbank	54_36p	-1	reviewed	silent	c.1899	p.I633	1	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAMTS19	171019	broad.mit.edu	36	5	128825299	128825299	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	128825299	128825299	C	A	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	1	reviewed	missense	c.679	p.L227M	0.91	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
ADAMTS19	171019	broad.mit.edu	36	5	129047732	129047732	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	129047732	129047732	G	C	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	1	reviewed	missense	c.2667	p.Q889H	1	HMMPfam_ADAM_spacer1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS19	171019	broad.mit.edu	36	5	129047834	129047834	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	129047834	129047834	C	T	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	1	reviewed	silent	c.2769	p.S923	1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS19	171019	broad.mit.edu	36	5	129098563	129098563	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	129098563	129098563	A	T	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	1	reviewed	missense	c.3334	p.I1112F	0.96	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ADAMTS19	171019	broad.mit.edu	36	5	129100807	129100807	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	129100807	129100807	T	A	SNP	ADAMTS19	NM_133638	human	genbank	54_36p	1	reviewed	missense	c.3621	p.S1207R	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
CHSY3	337876	broad.mit.edu	36	5	129549287	129549287	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	129549287	129549287	A	T	SNP	CHSY3	NM_175856	human	genbank	54_36p	1	validated	missense	c.2553	p.L851F	1	"HMMPfam_CHGN,superfamily_SSF53448"	"HMMPfam_CHGN,superfamily_SSF53448"	-	no_errors
RAPGEF6	51735	broad.mit.edu	36	5	130792511	130792511	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	130792511	130792511	G	T	SNP	RAPGEF6	NM_016340	human	genbank	54_36p	-1	provisional	missense	c.4763	p.A1588E	1	NULL	"superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00147,HMMPfam_RasGEF"	-	no_errors
FNIP1	96459	broad.mit.edu	36	5	131160476	131160476	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	131160476	131160476	C	T	SNP	FNIP1	NM_133372	human	genbank	54_36p	-1	validated	missense	c.38	p.R13K	0.94	NULL	NULL	-	no_errors
IL3	3562	broad.mit.edu	36	5	131426278	131426278	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	131426278	131426278	C	A	SNP	IL3	NM_000588	human	genbank	54_36p	1	reviewed	silent	c.354	p.I118	0	"HMMPfam_IL3,superfamily_4_helix_cytokine"	"HMMPfam_IL3,superfamily_4_helix_cytokine"	-	no_errors
PDLIM4	8572	broad.mit.edu	36	5	131634520	131634520	+	Missense_Mutation	SNP	C	C	A	rs62384133	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	131634520	131634520	C	A	SNP	PDLIM4	NM_003687	human	genbank	54_36p	1	validated	missense	c.341	p.T114K	0	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
RAD50	10111	broad.mit.edu	36	5	131953269	131953269	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	131953269	131953269	G	C	SNP	RAD50	NM_005732	human	genbank	54_36p	1	reviewed	missense	c.1293	p.E431D	0.93	"HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Spectrin repeat,HMMPfam_Rad50_zn_hook,superfamily_Prefoldin"	-	no_errors
RAD50	10111	broad.mit.edu	36	5	132004387	132004387	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	132004387	132004387	C	G	SNP	RAD50	NM_005732	human	genbank	54_36p	1	reviewed	missense	c.3743	p.A1248G	1	"HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_SMC_N,HMMPfam_Rad50_zn_hook,superfamily_Prefoldin,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIF3A	11127	broad.mit.edu	36	5	132066159	132066159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	132066159	132066159	G	A	SNP	KIF3A	NM_007054	human	genbank	54_36p	-1	validated	missense	c.1667	p.A556V	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
SEPT8	23176	broad.mit.edu	36	5	132124565	132124565	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	132124565	132124565	G	T	SNP	SEPT8	NM_001098811	human	genbank	54_36p	-1	validated	missense	c.1114	p.H372N	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin"	-	no_errors
AFF4	27125	broad.mit.edu	36	5	132251476	132251476	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	132251476	132251476	G	A	SNP	AFF4	NM_014423	human	genbank	54_36p	-1	validated	missense	c.2894	p.S965F	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AFF4	27125	broad.mit.edu	36	5	132298123	132298123	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	5	132298123	132298123	G	C	SNP	AFF4	NM_014423	human	genbank	54_36p	-1	validated	missense	c.533	p.S178C	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
PPP2CA	5515	broad.mit.edu	36	5	133569679	133569679	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	133569679	133569679	G	A	SNP	PPP2CA	NM_002715	human	genbank	54_36p	-1	reviewed	nonsense	c.145	p.R49*	1	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156"	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE"	-	no_errors
CATSPER3	347732	broad.mit.edu	36	5	134333576	134333576	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	134333576	134333576	C	G	SNP	CATSPER3	NM_178019	human	genbank	54_36p	1	validated	missense	c.147	p.S49R	0	superfamily_SSF81324	"superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
PITX1	5307	broad.mit.edu	36	5	134392496	134392496	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	134392496	134392496	C	T	SNP	PITX1	NM_002653	human	genbank	54_36p	-1	reviewed	missense	c.817	p.V273I	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
FBXL21	26223	broad.mit.edu	36	5	135301012	135301012	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	135301012	135301012	G	A	SNP	FBXL21	ENST00000297158	human	ensembl	54_36p	1	known	splice_site	c.1-1	e1-1	1	-	-	-	no_errors
TGFBI	7045	broad.mit.edu	36	5	135417556	135417556	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	135417556	135417556	A	C	SNP	TGFBI	NM_000358	human	genbank	54_36p	1	reviewed	silent	c.1152	p.A384	0.52	superfamily_FAS1 domain	"HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554"	-	no_errors
TRPC7	57113	broad.mit.edu	36	5	135679364	135679364	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	135679364	135679364	G	A	SNP	TRPC7	ENST00000265193	human	ensembl	54_36p	-1	known	silent	c.780	p.N260	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans"	-	no_errors
TRPC7	57113	broad.mit.edu	36	5	135720346	135720346	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	135720346	135720346	T	A	SNP	TRPC7	ENST00000265193	human	ensembl	54_36p	-1	known	missense	c.626	p.D209V	1	HMMPfam_TRP_2	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2"	-	no_errors
FAM53C	51307	broad.mit.edu	36	5	137710422	137710422	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	137710422	137710422	G	A	SNP	FAM53C	NM_016605	human	genbank	54_36p	1	validated	missense	c.1054	p.V352M	1	NULL	NULL	-	no_errors
KDM3B	51780	broad.mit.edu	36	5	137755763	137755763	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	137755763	137755763	A	G	SNP	JMJD1B	NM_016604	human	genbank	54_36p	1	validated	missense	c.2543	p.N848S	1	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
REEP2	51308	broad.mit.edu	36	5	137802824	137802824	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	137802824	137802824	G	A	SNP	REEP2	NM_016606	human	genbank	54_36p	1	provisional	missense	c.28	p.V10M	1	HMMPfam_TB2_DP1_HVA22	HMMPfam_TB2_DP1_HVA22	-	no_errors
ETF1	2107	broad.mit.edu	36	5	137882296	137882296	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	137882296	137882296	G	T	SNP	ETF1	NM_004730	human	genbank	54_36p	-1	validated	silent	c.246	p.L82	1	"superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1,HMMPfam_eRF1_1"	"superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1,HMMPfam_eRF1_1,superfamily_Translational machinery components,HMMPfam_eRF1_2,superfamily_L30e-like,HMMPfam_eRF1_3"	-	no_errors
CTNNA1	1495	broad.mit.edu	36	5	138145513	138145513	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	138145513	138145513	A	C	SNP	CTNNA1	NM_001903	human	genbank	54_36p	1	validated	missense	c.1	p.M1L	1	NULL	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin,PatternScan_VINCULIN_1"	-	no_errors
SLC23A1	9963	broad.mit.edu	36	5	138746824	138746824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	138746824	138746824	G	C	SNP	SLC23A1	NM_152685	human	genbank	54_36p	-1	reviewed	missense	c.18	p.D6E	0.89	NULL	HMMPfam_Xan_ur_permease	-	no_errors
PURA	5813	broad.mit.edu	36	5	139474425	139474425	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	139474425	139474425	C	T	SNP	PURA	NM_005859	human	genbank	54_36p	1	reviewed	missense	c.475	p.L159F	1	"HMMPfam_PurA,HMMSmart_PUR"	"HMMPfam_PurA,HMMSmart_PUR"	-	no_errors
SLC4A9	83697	broad.mit.edu	36	5	139723890	139723890	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	139723890	139723890	C	G	SNP	SLC4A9	NM_031467	human	genbank	54_36p	1	validated	missense	c.1322	p.P441R	1	HMMPfam_HCO3_cotransp	"HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr"	-	no_errors
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139818393	139818393	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	139818393	139818393	G	T	SNP	ANKHD1-EIF4EBP3	NM_020690	human	genbank	54_36p	1	reviewed	splice_site	c.1243-1	e8-1	1	-	-	-	no_errors
APBB3	10307	broad.mit.edu	36	5	139921380	139921380	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	139921380	139921380	A	T	SNP	APBB3	NM_006051	human	genbank	54_36p	-1	reviewed	missense	c.744	p.S248R	1	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID"	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID"	-	no_errors
IK	3550	broad.mit.edu	36	5	140011547	140011547	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140011547	140011547	G	T	SNP	IK	NM_006083	human	genbank	54_36p	1	reviewed	missense	c.148	p.A50S	1	NULL	"HMMPfam_RED_N,HMMPfam_RED_C"	-	no_errors
WDR55	54853	broad.mit.edu	36	5	140024686	140024686	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140024686	140024686	A	C	SNP	WDR55	NM_017706	human	genbank	54_36p	1	validated	missense	c.5	p.D2A	0.75	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
WDR55	54853	broad.mit.edu	36	5	140029001	140029001	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140029001	140029001	A	C	SNP	WDR55	NM_017706	human	genbank	54_36p	1	validated	missense	c.814	p.T272P	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
HARS	3035	broad.mit.edu	36	5	140034798	140034798	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	5	140034798	140034798	A	G	SNP	HARS	NM_002109	human	genbank	54_36p	-1	reviewed	silent	c.1299	p.D433	1	"superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon"	"superfamily_S15/NS1_bind,HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_SSF55681,HMMPfam_tRNA-synt_2b,superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon"	-	no_errors
PCDHA2	56146	broad.mit.edu	36	5	140155165	140155165	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	140155165	140155165	A	G	SNP	PCDHA2	NM_018905	human	genbank	54_36p	1	reviewed	silent	c.432	p.E144	0.92	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA2	56146	broad.mit.edu	36	5	140155966	140155966	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140155966	140155966	C	T	SNP	PCDHA2	NM_018905	human	genbank	54_36p	1	reviewed	silent	c.1233	p.S411	0.01	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA3	56145	broad.mit.edu	36	5	140162814	140162814	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140162814	140162814	C	T	SNP	PCDHA3	NM_018906	human	genbank	54_36p	1	reviewed	silent	c.1848	p.G616	0	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA3	56145	broad.mit.edu	36	5	140163241	140163241	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140163241	140163241	T	C	SNP	PCDHA3	NM_018906	human	genbank	54_36p	1	reviewed	missense	c.2275	p.C759R	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA4	56144	broad.mit.edu	36	5	140167040	140167040	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140167040	140167040	C	T	SNP	PCDHA4	NM_018907	human	genbank	54_36p	1	reviewed	silent	c.84	p.N28	0.59	superfamily_Cadherin-like	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA4	56144	broad.mit.edu	36	5	140167356	140167356	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140167356	140167356	C	T	SNP	PCDHA4	NM_018907	human	genbank	54_36p	1	reviewed	missense	c.400	p.P134S	0.86	superfamily_Cadherin-like	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA4	56144	broad.mit.edu	36	5	140167813	140167813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140167813	140167813	C	T	SNP	PCDHA4	NM_018907	human	genbank	54_36p	1	reviewed	missense	c.857	p.S286L	0	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA4	56144	broad.mit.edu	36	5	140168261	140168261	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140168261	140168261	G	A	SNP	PCDHA4	NM_018907	human	genbank	54_36p	1	reviewed	silent	c.1305	p.L435	0.1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA4	56144	broad.mit.edu	36	5	140168448	140168448	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140168448	140168448	C	T	SNP	PCDHA4	NM_018907	human	genbank	54_36p	1	reviewed	missense	c.1492	p.R498W	0.41	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA5	56143	broad.mit.edu	36	5	140182202	140182202	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140182202	140182202	G	A	SNP	PCDHA5	NM_018908	human	genbank	54_36p	1	reviewed	missense	c.658	p.E220K	0.54	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA7	56141	broad.mit.edu	36	5	140194240	140194240	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140194240	140194240	C	T	SNP	PCDHA7	NM_018910	human	genbank	54_36p	1	reviewed	nonsense	c.88	p.Q30*	0.99	"superfamily_Cadherin-like,HMMPfam_Cadherin_2"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA8	56140	broad.mit.edu	36	5	140202119	140202119	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140202119	140202119	A	C	SNP	PCDHA8	NM_018911	human	genbank	54_36p	1	reviewed	missense	c.1029	p.K343N	0	"superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA9	9752	broad.mit.edu	36	5	140208677	140208677	+	Missense_Mutation	SNP	A	A	G	rs364101	"by-cluster,by-frequency,by-submitter,by-hapmap"	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140208677	140208677	A	G	SNP	PCDHA9	NM_031857	human	genbank	54_36p	1	reviewed	missense	c.413	p.K138R	0.01	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA9	9752	broad.mit.edu	36	5	140209215	140209215	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	140209215	140209215	G	T	SNP	PCDHA9	NM_031857	human	genbank	54_36p	1	reviewed	missense	c.951	p.K317N	0.02	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA9	9752	broad.mit.edu	36	5	140209219	140209219	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	140209219	140209219	C	T	SNP	PCDHA9	NM_031857	human	genbank	54_36p	1	reviewed	missense	c.955	p.P319S	0	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA10	56139	broad.mit.edu	36	5	140217167	140217167	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140217167	140217167	C	G	SNP	PCDHA10	NM_018901	human	genbank	54_36p	1	reviewed	missense	c.1350	p.N450K	0.88	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA10	56139	broad.mit.edu	36	5	140217176	140217176	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140217176	140217176	G	A	SNP	PCDHA10	NM_018901	human	genbank	54_36p	1	reviewed	silent	c.1359	p.A453	0	superfamily_Cadherin-like	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA11	56138	broad.mit.edu	36	5	140229831	140229831	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140229831	140229831	A	G	SNP	PCDHA11	NM_018902	human	genbank	54_36p	1	reviewed	missense	c.959	p.Q320R	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA12	56137	broad.mit.edu	36	5	140237296	140237296	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140237296	140237296	C	T	SNP	PCDHA12	NM_018903	human	genbank	54_36p	1	reviewed	silent	c.2055	p.G685	0.02	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA13	56136	broad.mit.edu	36	5	140242751	140242751	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140242751	140242751	C	T	SNP	PCDHA13	NM_018904	human	genbank	54_36p	1	reviewed	silent	c.714	p.N238	0.87	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHA13	56136	broad.mit.edu	36	5	140242876	140242876	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140242876	140242876	C	T	SNP	PCDHA13	NM_018904	human	genbank	54_36p	1	reviewed	missense	c.839	p.S280L	0.82	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHA13	56136	broad.mit.edu	36	5	140244061	140244061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140244061	140244061	C	T	SNP	PCDHA13	NM_018904	human	genbank	54_36p	1	reviewed	missense	c.2024	p.A675V	0	HMMSmart_SM00112	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHAC1	56135	broad.mit.edu	36	5	140288470	140288470	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140288470	140288470	G	A	SNP	PCDHAC1	NM_018898	human	genbank	54_36p	1	reviewed	silent	c.1809	p.A603	0.38	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHAC2	56134	broad.mit.edu	36	5	140327822	140327822	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140327822	140327822	A	G	SNP	PCDHAC2	NM_018899	human	genbank	54_36p	1	reviewed	silent	c.1287	p.R429	0.99	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHAC2	56134	broad.mit.edu	36	5	140369490	140369490	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140369490	140369490	C	T	SNP	PCDHAC2	NM_018899	human	genbank	54_36p	1	reviewed	silent	c.2808	p.S936	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHB2	56133	broad.mit.edu	36	5	140454591	140454591	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	5	140454591	140454591	G	T	SNP	PCDHB2	NM_018936	human	genbank	54_36p	1	reviewed	silent	c.33	p.P11	0.23	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB2	56133	broad.mit.edu	36	5	140455013	140455013	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140455013	140455013	C	A	SNP	PCDHB2	NM_018936	human	genbank	54_36p	1	reviewed	missense	c.455	p.T152N	0.02	"HMMPfam_Cadherin,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB2	56133	broad.mit.edu	36	5	140456591	140456591	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140456591	140456591	C	T	SNP	PCDHB2	NM_018936	human	genbank	54_36p	1	reviewed	missense	c.2033	p.A678V	0	NULL	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB3	56132	broad.mit.edu	36	5	140461793	140461793	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140461793	140461793	T	C	SNP	PCDHB3	NM_018937	human	genbank	54_36p	1	reviewed	missense	c.1376	p.F459S	0	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB4	56131	broad.mit.edu	36	5	140483358	140483358	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140483358	140483358	G	A	SNP	PCDHB4	NM_018938	human	genbank	54_36p	1	reviewed	missense	c.1594	p.A532T	0.91	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDHB5	26167	broad.mit.edu	36	5	140495805	140495805	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	140495805	140495805	G	A	SNP	PCDHB5	NM_015669	human	genbank	54_36p	1	reviewed	missense	c.605	p.R202Q	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDHB5	26167	broad.mit.edu	36	5	140496729	140496729	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140496729	140496729	G	A	SNP	PCDHB5	NM_015669	human	genbank	54_36p	1	reviewed	missense	c.1529	p.G510D	0.98	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB6	56130	broad.mit.edu	36	5	140511666	140511666	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140511666	140511666	G	A	SNP	PCDHB6	NM_018939	human	genbank	54_36p	1	reviewed	silent	c.1644	p.L548	0.04	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1"	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB7	56129	broad.mit.edu	36	5	140533226	140533226	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140533226	140533226	G	A	SNP	PCDHB7	NM_018940	human	genbank	54_36p	1	reviewed	missense	c.626	p.S209N	0	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112"	-	no_errors
PCDHB7	56129	broad.mit.edu	36	5	140533502	140533502	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140533502	140533502	T	C	SNP	PCDHB7	NM_018940	human	genbank	54_36p	1	reviewed	missense	c.902	p.L301P	0.22	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHB7	56129	broad.mit.edu	36	5	140534449	140534449	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140534449	140534449	G	A	SNP	PCDHB7	NM_018940	human	genbank	54_36p	1	reviewed	missense	c.1849	p.V617M	0.06	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHB16	57717	broad.mit.edu	36	5	140542463	140542463	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140542463	140542463	G	C	SNP	PCDHB16	NM_020957	human	genbank	54_36p	1	reviewed	missense	c.145	p.G49R	0.58	"HMMPfam_Cadherin_2,superfamily_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMSmart_CA,HMMPfam_Cadherin"	-	no_errors
PCDHB16	57717	broad.mit.edu	36	5	140542871	140542872	+	Missense_Mutation	DNP	TT	TT	GA	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140542871	140542872	TT	GA	DNP	PCDHB16	NM_020957	human	genbank	54_36p	1	reviewed	missense	c.553_554	p.F185D	0.000:0.000	"HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB16	57717	broad.mit.edu	36	5	140544180	140544180	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140544180	140544180	A	G	SNP	PCDHB16	NM_020957	human	genbank	54_36p	1	reviewed	missense	c.1862	p.N621S	0.67	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB16	57717	broad.mit.edu	36	5	140544190	140544190	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140544190	140544190	G	A	SNP	PCDHB16	NM_020957	human	genbank	54_36p	1	reviewed	silent	c.1872	p.V624	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB9	56127	broad.mit.edu	36	5	140547432	140547432	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140547432	140547432	C	G	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	missense	c.356	p.A119G	0	superfamily_Cadherin-like	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PCDHB9	56127	broad.mit.edu	36	5	140547997	140547997	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140547997	140547997	T	G	SNP	PCDHB9	NM_019119	human	genbank	54_36p	1	reviewed	silent	c.921	p.L307	0.05	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PCDHB10	56126	broad.mit.edu	36	5	140553349	140553349	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140553349	140553349	T	A	SNP	PCDHB10	NM_018930	human	genbank	54_36p	1	reviewed	missense	c.1040	p.L347Q	0.96	superfamily_Cadherin	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDHB10	56126	broad.mit.edu	36	5	140553698	140553698	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140553698	140553698	C	A	SNP	PCDHB10	NM_018930	human	genbank	54_36p	1	reviewed	missense	c.1389	p.N463K	1	"HMMPfam_Cadherin,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB10	56126	broad.mit.edu	36	5	140553983	140553983	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140553983	140553983	G	A	SNP	PCDHB10	NM_018930	human	genbank	54_36p	1	reviewed	silent	c.1674	p.S558	0.85	"HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB11	56125	broad.mit.edu	36	5	140559950	140559950	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140559950	140559950	T	C	SNP	PCDHB11	NM_018931	human	genbank	54_36p	1	reviewed	missense	c.419	p.L140P	0.01	"superfamily_Cadherin,HMMPfam_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB11	56125	broad.mit.edu	36	5	140560913	140560913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140560913	140560913	G	A	SNP	PCDHB11	NM_018931	human	genbank	54_36p	1	reviewed	missense	c.1382	p.R461H	0	"HMMPfam_Cadherin,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB11	56125	broad.mit.edu	36	5	140561196	140561196	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140561196	140561196	C	T	SNP	PCDHB11	NM_018931	human	genbank	54_36p	1	reviewed	silent	c.1665	p.N555	1	"HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB12	56124	broad.mit.edu	36	5	140570171	140570171	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140570171	140570171	T	G	SNP	PCDHB12	NM_018932	human	genbank	54_36p	1	reviewed	missense	c.1508	p.L503R	0	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB13	56123	broad.mit.edu	36	5	140574459	140574460	+	Missense_Mutation	DNP	GA	GA	CG	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140574459	140574460	GA	CG	DNP	PCDHB13	NM_018933	human	genbank	54_36p	1	reviewed	missense	c.580_581	p.E194R	0.516:0.520	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHB13	56123	broad.mit.edu	36	5	140574541	140574541	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140574541	140574541	C	T	SNP	PCDHB13	NM_018933	human	genbank	54_36p	1	reviewed	missense	c.662	p.P221L	0.26	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB13	56123	broad.mit.edu	36	5	140575353	140575353	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140575353	140575353	C	G	SNP	PCDHB13	NM_018933	human	genbank	54_36p	1	reviewed	missense	c.1474	p.P492A	0.15	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB13	56123	broad.mit.edu	36	5	140576137	140576138	+	Missense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140576137	140576138	TG	CT	DNP	PCDHB13	NM_018933	human	genbank	54_36p	1	reviewed	missense	c.2258_2259	p.V753A	0.968:0.944	NULL	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHB14	56122	broad.mit.edu	36	5	140583647	140583647	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140583647	140583647	A	T	SNP	PCDHB14	NM_018934	human	genbank	54_36p	1	reviewed	missense	c.386	p.H129L	0.98	"PatternScan_CADHERIN_1,superfamily_Cadherin"	"HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA"	-	no_errors
PCDHB14	56122	broad.mit.edu	36	5	140584797	140584797	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140584797	140584797	C	G	SNP	PCDHB14	NM_018934	human	genbank	54_36p	1	reviewed	missense	c.1536	p.H512Q	0	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin"	-	no_errors
PCDHGA2	56113	broad.mit.edu	36	5	140698942	140698942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140698942	140698942	C	T	SNP	PCDHGA2	NM_018915	human	genbank	54_36p	1	reviewed	missense	c.220	p.L74F	1	"HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2"	"HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA3	56112	broad.mit.edu	36	5	140705711	140705711	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140705711	140705711	G	T	SNP	PCDHGA3	NM_018916	human	genbank	54_36p	1	reviewed	missense	c.1927	p.V643L	0.97	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA3	56112	broad.mit.edu	36	5	140705880	140705880	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	140705880	140705880	C	T	SNP	PCDHGA3	NM_018916	human	genbank	54_36p	1	reviewed	missense	c.2096	p.A699V	0	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGB1	56104	broad.mit.edu	36	5	140711189	140711189	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140711189	140711189	C	A	SNP	PCDHGB1	NM_018922	human	genbank	54_36p	1	reviewed	missense	c.1178	p.T393N	0.05	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGB3	56102	broad.mit.edu	36	5	140731825	140731825	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140731825	140731825	G	T	SNP	PCDHGB3	NM_018924	human	genbank	54_36p	1	reviewed	silent	c.1680	p.P560	0	"superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1"	"HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA7	56108	broad.mit.edu	36	5	140744874	140744874	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140744874	140744874	G	T	SNP	PCDHGA7	NM_018920	human	genbank	54_36p	1	reviewed	missense	c.2224	p.G742C	1	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGB4	8641	broad.mit.edu	36	5	140749606	140749606	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140749606	140749606	G	A	SNP	PCDHGB4	NM_003736	human	genbank	54_36p	1	reviewed	silent	c.1971	p.T657	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGB5	56101	broad.mit.edu	36	5	140758483	140758483	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	140758483	140758483	G	A	SNP	PCDHGB5	NM_018925	human	genbank	54_36p	1	reviewed	missense	c.605	p.R202Q	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA9	56107	broad.mit.edu	36	5	140763341	140763341	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140763341	140763341	C	T	SNP	PCDHGA9	NM_018921	human	genbank	54_36p	1	reviewed	missense	c.638	p.T213M	0.99	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1"	-	no_errors
PCDHGB6	56100	broad.mit.edu	36	5	140769188	140769188	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140769188	140769188	G	A	SNP	PCDHGB6	NM_018926	human	genbank	54_36p	1	reviewed	missense	c.1235	p.R412Q	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA10	56106	broad.mit.edu	36	5	140773042	140773042	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140773042	140773042	T	G	SNP	PCDHGA10	NM_018913	human	genbank	54_36p	1	reviewed	missense	c.116	p.I39S	0.59	"superfamily_Cadherin-like,HMMPfam_Cadherin_2"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA10	56106	broad.mit.edu	36	5	140773414	140773414	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140773414	140773414	A	C	SNP	PCDHGA10	NM_018913	human	genbank	54_36p	1	reviewed	missense	c.488	p.D163A	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGA10	56106	broad.mit.edu	36	5	140774133	140774133	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140774133	140774133	G	C	SNP	PCDHGA10	NM_018913	human	genbank	54_36p	1	reviewed	missense	c.1207	p.D403H	0	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGA10	56106	broad.mit.edu	36	5	140774373	140774373	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140774373	140774373	C	G	SNP	PCDHGA10	NM_018913	human	genbank	54_36p	1	reviewed	missense	c.1447	p.P483A	0.99	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGB7	56099	broad.mit.edu	36	5	140778607	140778607	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140778607	140778607	G	A	SNP	PCDHGB7	NM_018927	human	genbank	54_36p	1	reviewed	missense	c.997	p.V333I	0.99	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGB7	56099	broad.mit.edu	36	5	140778821	140778821	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140778821	140778821	T	G	SNP	PCDHGB7	NM_018927	human	genbank	54_36p	1	reviewed	missense	c.1211	p.L404R	0.76	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGA11	56105	broad.mit.edu	36	5	140781349	140781350	+	Missense_Mutation	DNP	TA	TA	GG	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	TA	TA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140781349	140781350	TA	GG	DNP	PCDHGA11	NM_018914	human	genbank	54_36p	1	reviewed	missense	c.371_372	p.I124R	0.993:0.617	"superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGA11	56105	broad.mit.edu	36	5	140781683	140781683	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140781683	140781683	T	G	SNP	PCDHGA11	NM_018914	human	genbank	54_36p	1	reviewed	missense	c.705	p.D235E	0.24	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGA11	56105	broad.mit.edu	36	5	140781782	140781782	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140781782	140781782	G	A	SNP	PCDHGA11	NM_018914	human	genbank	54_36p	1	reviewed	silent	c.804	p.T268	0.25	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like"	-	no_errors
PCDHGA12	26025	broad.mit.edu	36	5	140792798	140792798	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	140792798	140792798	C	T	SNP	PCDHGA12	NM_003735	human	genbank	54_36p	1	reviewed	missense	c.2288	p.S763L	0.91	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDHGC3	5098	broad.mit.edu	36	5	140836006	140836014	+	In_Frame_Del	DEL	GTGGGCAAC	-	GTGGGCAAC	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	GTGGGCAAC	GTGGGCAAC	-	-	GTGGGCAAC	GTGGGCAAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	5	140836006	140836014	GTGGGCAAC	-	DEL	PCDHGC3	NM_002588	human	genbank	54_36p	1	reviewed	in_frame_del	c.139_147	p.GNV48in_frame_del	0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_Cadherin-like,HMMPfam_Cadherin_2"	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	"(deletion:cds_exon[140835868,140838297])"	no_errors
PCDHGC5	56097	broad.mit.edu	36	5	140851075	140851075	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	140851075	140851075	T	A	SNP	PCDHGC5	NM_018929	human	genbank	54_36p	1	reviewed	missense	c.2084	p.I695N	1	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
FCHSD1	89848	broad.mit.edu	36	5	141001279	141001279	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	141001279	141001279	C	T	SNP	FCHSD1	NM_033449	human	genbank	54_36p	-1	provisional	silent	c.2043	p.P681	1	NULL	"HMMSmart_SM00055,HMMPfam_FCH,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_SH3_2"	-	no_errors
FCHSD1	89848	broad.mit.edu	36	5	141006472	141006472	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	141006472	141006472	A	G	SNP	FCHSD1	NM_033449	human	genbank	54_36p	-1	provisional	missense	c.926	p.V309A	0.99	NULL	"HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2"	-	no_errors
ARAP3	64411	broad.mit.edu	36	5	141032024	141032024	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	141032024	141032024	G	A	SNP	ARAP3	NM_022481	human	genbank	54_36p	-1	reviewed	nonsense	c.1414	p.Q472*	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP,HMMPfam_RA"	-	no_errors
PCDH1	5097	broad.mit.edu	36	5	141228507	141228507	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	141228507	141228507	C	T	SNP	PCDH1	NM_032420	human	genbank	54_36p	-1	reviewed	silent	c.714	p.L238	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_GREAB_2,HMMPfam_Protocadherin"	-	no_errors
PCDH1	5097	broad.mit.edu	36	5	141228620	141228620	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	141228620	141228620	C	T	SNP	PCDH1	NM_032420	human	genbank	54_36p	-1	reviewed	missense	c.601	p.G201S	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin,PatternScan_GREAB_2"	-	no_errors
PCDH12	51294	broad.mit.edu	36	5	141317388	141317388	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	141317388	141317388	C	G	SNP	PCDH12	NM_016580	human	genbank	54_36p	-1	reviewed	silent	c.213	p.L71	0.03	"superfamily_Cadherin,HMMPfam_Cadherin_2,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin_2,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
NR3C1	2908	broad.mit.edu	36	5	142641666	142641666	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	142641666	142641666	A	G	SNP	NR3C1	NM_001024094	human	genbank	54_36p	-1	reviewed	missense	c.2318	p.L773P	1	superfamily_Str_ncl_receptor	"HMMPfam_GCR,HMMSmart_ZnF_C4,superfamily_SSF57716,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
KCTD16	57528	broad.mit.edu	36	5	143567042	143567042	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	143567042	143567042	G	A	SNP	KCTD16	NM_020768	human	genbank	54_36p	1	validated	missense	c.572	p.R191Q	1	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra"	-	no_errors
KCTD16	57528	broad.mit.edu	36	5	143833771	143833771	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	143833771	143833771	G	A	SNP	KCTD16	NM_020768	human	genbank	54_36p	1	validated	silent	c.1188	p.E396	1	NULL	"HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold"	-	no_errors
TCERG1	10915	broad.mit.edu	36	5	145867680	145867680	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	145867680	145867680	C	G	SNP	TCERG1	NM_006706	human	genbank	54_36p	1	reviewed	missense	c.2962	p.P988A	1	"HMMSmart_SM00441,HMMPfam_FF,superfamily_FF domain"	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_FF domain,HMMSmart_SM00441,HMMPfam_FF"	-	no_errors
GPR151	134391	broad.mit.edu	36	5	145874993	145874993	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	145874993	145874993	C	T	SNP	GPR151	NM_194251	human	genbank	54_36p	-1	provisional	missense	c.877	p.V293I	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
DPYSL3	1809	broad.mit.edu	36	5	146760540	146760540	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	146760540	146760540	G	C	SNP	DPYSL3	NM_001387	human	genbank	54_36p	-1	validated	missense	c.1018	p.Q340E	1	"superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556"	"superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556"	-	no_errors
JAKMIP2	9832	broad.mit.edu	36	5	147031461	147031461	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	147031461	147031461	C	G	SNP	JAKMIP2	NM_014790	human	genbank	54_36p	-1	provisional	missense	c.102	p.Q34H	1	NULL	NULL	-	no_errors
SCGB3A2	117156	broad.mit.edu	36	5	147241259	147241259	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	147241259	147241259	C	T	SNP	SCGB3A2	NM_054023	human	genbank	54_36p	1	provisional	missense	c.113	p.P38L	0.05	NULL	NULL	-	no_errors
FBXO38	81545	broad.mit.edu	36	5	147775749	147775749	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	147775749	147775749	T	A	SNP	FBXO38	NM_205836	human	genbank	54_36p	1	validated	missense	c.1330	p.S444T	1	superfamily_RNI-like	"superfamily_F-box domain,HMMPfam_F-box,superfamily_RNI-like"	-	no_errors
FBXO38	81545	broad.mit.edu	36	5	147787703	147787703	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	147787703	147787703	G	C	SNP	FBXO38	NM_205836	human	genbank	54_36p	1	validated	missense	c.2653	p.E885Q	1	NULL	"HMMPfam_F-box,superfamily_RNI-like,superfamily_F-box domain"	-	no_errors
FBXO38	81545	broad.mit.edu	36	5	147800981	147800981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	147800981	147800981	G	A	SNP	FBXO38	NM_205836	human	genbank	54_36p	1	validated	missense	c.3376	p.D1126N	1	NULL	"HMMPfam_F-box,superfamily_RNI-like,superfamily_F-box domain"	-	no_errors
HTR4	3360	broad.mit.edu	36	5	147869419	147869419	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	147869419	147869419	G	C	SNP	HTR4	NM_001040173	human	genbank	54_36p	-1	reviewed	missense	c.869	p.P290R	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SH3TC2	79628	broad.mit.edu	36	5	148388284	148388284	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	148388284	148388284	C	T	SNP	SH3TC2	NM_024577	human	genbank	54_36p	-1	reviewed	missense	c.1204	p.V402I	0	NULL	"superfamily_SH3-domain,HMMPfam_SH3_2,HMMPfam_SH3_1,HMMSmart_SM00326,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1"	-	no_errors
ABLIM3	22885	broad.mit.edu	36	5	148576783	148576783	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	148576783	148576783	A	T	SNP	ABLIM3	NM_014945	human	genbank	54_36p	1	validated	silent	c.738	p.G246	1	"HMMSmart_SM00132,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	"HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
ABLIM3	22885	broad.mit.edu	36	5	148607627	148607627	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	148607627	148607627	C	A	SNP	ABLIM3	NM_014945	human	genbank	54_36p	1	validated	missense	c.1641	p.S547R	1	NULL	"HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
AFAP1L1	134265	broad.mit.edu	36	5	148676037	148676037	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	148676037	148676037	C	A	SNP	AFAP1L1	NM_152406	human	genbank	54_36p	1	provisional	silent	c.1245	p.T415	0	superfamily_PH domain-like	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PPARGC1B	133522	broad.mit.edu	36	5	149180263	149180263	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149180263	149180263	C	A	SNP	PPARGC1B	NM_133263	human	genbank	54_36p	1	provisional	missense	c.153	p.D51E	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
PPARGC1B	133522	broad.mit.edu	36	5	149186536	149186536	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149186536	149186536	C	T	SNP	PPARGC1B	NM_133263	human	genbank	54_36p	1	provisional	silent	c.360	p.D120	0.05	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
PPARGC1B	133522	broad.mit.edu	36	5	149190629	149190629	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149190629	149190629	C	T	SNP	PPARGC1B	NM_133263	human	genbank	54_36p	1	provisional	missense	c.572	p.P191L	0.99	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
PDE6A	5145	broad.mit.edu	36	5	149263419	149263419	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149263419	149263419	G	C	SNP	PDE6A	NM_000440	human	genbank	54_36p	-1	reviewed	missense	c.1098	p.D366E	0.79	"HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781"	"superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
TIGD6	81789	broad.mit.edu	36	5	149355814	149355814	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149355814	149355814	A	G	SNP	TIGD6	NM_030953	human	genbank	54_36p	-1	validated	silent	c.291	p.T97	0.05	"superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB"	"HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind,HMMSmart_CENPB,HMMPfam_DDE"	-	no_errors
CSF1R	1436	broad.mit.edu	36	5	149440663	149440663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149440663	149440663	G	C	SNP	CSF1R	NM_005211	human	genbank	54_36p	-1	reviewed	missense	c.167	p.P56R	0.03	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
PDGFRB	5159	broad.mit.edu	36	5	149496770	149496770	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149496770	149496770	G	C	SNP	PDGFRB	NM_002609	human	genbank	54_36p	-1	reviewed	missense	c.34	p.L12V	0.31	NULL	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TCOF1	6949	broad.mit.edu	36	5	149733928	149733928	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	149733928	149733928	A	C	SNP	TCOF1	NM_001008656	human	genbank	54_36p	1	reviewed	splice_site	c.871-2	e8-2	0.02	-	-	-	no_errors
NDST1	3340	broad.mit.edu	36	5	149881247	149881247	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149881247	149881247	C	T	SNP	NDST1	NM_001543	human	genbank	54_36p	1	validated	missense	c.238	p.R80C	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
NDST1	3340	broad.mit.edu	36	5	149887837	149887837	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149887837	149887837	C	G	SNP	NDST1	NM_001543	human	genbank	54_36p	1	validated	silent	c.792	p.A264	1	NULL	"HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NDST1	3340	broad.mit.edu	36	5	149895493	149895493	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	149895493	149895493	G	A	SNP	NDST1	NM_001543	human	genbank	54_36p	1	validated	silent	c.1290	p.A430	0.23	NULL	"HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RBM22	55696	broad.mit.edu	36	5	150060704	150060704	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	150060704	150060704	G	A	SNP	RBM22	NM_018047	human	genbank	54_36p	-1	reviewed	nonsense	c.37	p.Q13*	1	NULL	"HMMSmart_SM00356,HMMPfam_zf-CCCH,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ZNF300	91975	broad.mit.edu	36	5	150255570	150255570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	150255570	150255570	G	A	SNP	ZNF300	NM_052860	human	genbank	54_36p	-1	provisional	missense	c.1424	p.S475F	0.03	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	-	no_errors
TNIP1	10318	broad.mit.edu	36	5	150421932	150421932	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	150421932	150421932	G	C	SNP	TNIP1	NM_006058	human	genbank	54_36p	-1	validated	silent	c.306	p.A102	0	NULL	NULL	-	no_errors
CCDC69	26112	broad.mit.edu	36	5	150565218	150565218	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	150565218	150565218	T	A	SNP	CCDC69	NM_015621	human	genbank	54_36p	-1	validated	missense	c.60	p.E20D	0.14	NULL	NULL	-	no_errors
SLC36A3	285641	broad.mit.edu	36	5	150637392	150637392	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	150637392	150637392	G	A	SNP	SLC36A3	NM_181774	human	genbank	54_36p	-1	validated	missense	c.1168	p.R390C	0.98	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
FAT2	2196	broad.mit.edu	36	5	150872082	150872082	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	150872082	150872082	A	G	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	silent	c.11742	p.D3914	0.95	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT2	2196	broad.mit.edu	36	5	150897668	150897668	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	150897668	150897668	T	A	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	silent	c.9072	p.V3024	0.28	"HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT2	2196	broad.mit.edu	36	5	150900507	150900507	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	150900507	150900507	G	T	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	silent	c.8853	p.P2951	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT2	2196	broad.mit.edu	36	5	150902687	150902687	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	150902687	150902687	G	C	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	missense	c.8194	p.P2732A	0.54	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
SPARC	6678	broad.mit.edu	36	5	151027277	151027277	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	151027277	151027277	T	A	SNP	SPARC	NM_003118	human	genbank	54_36p	-1	provisional	missense	c.529	p.T177S	1	"HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand"	"superfamily_EGF/Laminin,HMMSmart_SM00274,HMMPfam_FOLN,PatternScan_OSTEONECTIN_1,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_Kazal-type serine protease inhibitors,HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand,PatternScan_OSTEONECTIN_2,PatternScan_EF_HAND_1"	-	no_errors
G3BP1	10146	broad.mit.edu	36	5	151159746	151159746	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	151159746	151159746	C	G	SNP	G3BP1	NM_005754	human	genbank	54_36p	1	reviewed	missense	c.947	p.P316R	0.99	superfamily_RNA-binding domain RBD	"HMMPfam_NTF2,superfamily_NTF2-like,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
GLRA1	2741	broad.mit.edu	36	5	151214884	151214884	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	151214884	151214884	C	A	SNP	GLRA1	NM_000171	human	genbank	54_36p	-1	reviewed	missense	c.607	p.A203S	1	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
NMUR2	56923	broad.mit.edu	36	5	151764166	151764166	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	151764166	151764166	G	A	SNP	NMUR2	NM_020167	human	genbank	54_36p	-1	reviewed	silent	c.702	p.V234	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GRIA1	2890	broad.mit.edu	36	5	153058649	153058649	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	153058649	153058649	C	T	SNP	GRIA1	NM_000827	human	genbank	54_36p	1	reviewed	silent	c.1275	p.N425	1	"HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRIA1	2890	broad.mit.edu	36	5	153170810	153170810	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	153170810	153170810	C	T	SNP	GRIA1	NM_000827	human	genbank	54_36p	1	reviewed	silent	c.2553	p.N851	0.99	NULL	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
GRIA1	2890	broad.mit.edu	36	5	153170951	153170951	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	153170951	153170951	G	A	SNP	GRIA1	NM_000827	human	genbank	54_36p	1	reviewed	silent	c.2694	p.G898	1	NULL	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
LARP1	23367	broad.mit.edu	36	5	154163167	154163167	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	154163167	154163167	G	T	SNP	LARP1	NM_033551	human	genbank	54_36p	1	validated	splice_site	c.2233+1	e12+1	1	-	-	-	no_errors
C5orf4	10826	broad.mit.edu	36	5	154183346	154183346	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	154183346	154183346	C	T	SNP	C5orf4	NM_032385	human	genbank	54_36p	-1	validated	splice_site	c.367-1	e5-1	1	-	-	-	no_errors
GEMIN5	25929	broad.mit.edu	36	5	154259047	154259047	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	154259047	154259047	C	G	SNP	GEMIN5	NM_015465	human	genbank	54_36p	-1	validated	missense	c.3031	p.A1011P	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
KIF4B	285643	broad.mit.edu	36	5	154375434	154375434	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	154375434	154375434	C	G	SNP	KIF4B	NM_001099293	human	genbank	54_36p	1	provisional	missense	c.1822	p.Q608E	1	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
HAVCR1	26762	broad.mit.edu	36	5	156415058	156415058	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	156415058	156415058	G	C	SNP	HAVCR1	NM_001099414	human	genbank	54_36p	-1	validated	missense	c.111	p.H37Q	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,PatternScan_IG_MHC"	-	no_errors
ITK	3702	broad.mit.edu	36	5	156577476	156577476	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	156577476	156577476	C	T	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	missense	c.476	p.P159L	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ITK	3702	broad.mit.edu	36	5	156597709	156597709	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	156597709	156597709	G	C	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	missense	c.781	p.A261P	1	"HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain"	###############################################################################################################################################################################################################################################################	-	no_errors
ITK	3702	broad.mit.edu	36	5	156601293	156601293	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	5	156601293	156601293	G	T	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	missense	c.1045	p.A349S	1	superfamily_SH2 domain	###############################################################################################################################################################################################################################################################	-	no_errors
ITK	3702	broad.mit.edu	36	5	156605577	156605577	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	5	156605577	156605577	G	A	SNP	ITK	NM_005546	human	genbank	54_36p	1	reviewed	silent	c.1623	p.V541	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
CYFIP2	26999	broad.mit.edu	36	5	156671363	156671363	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	156671363	156671363	G	T	SNP	CYFIP2	ENST00000347377	human	ensembl	54_36p	1	known	missense	c.1106	p.S369I	1	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
ADAM19	8728	broad.mit.edu	36	5	156849979	156849979	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	156849979	156849979	C	A	SNP	ADAM19	NM_023038	human	genbank	54_36p	-1	reviewed	missense	c.2161	p.D721Y	0.71	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ADAM19	8728	broad.mit.edu	36	5	156865338	156865338	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	156865338	156865338	G	T	SNP	ADAM19	NM_033274	human	genbank	54_36p	-1	reviewed	missense	c.1047	p.H349Q	1	"HMMPfam_Reprolysin,superfamily_Metalloproteases (zincins) catalytic domain"	###############################################################################################################################################################################################################################################################	-	no_errors
CLINT1	9685	broad.mit.edu	36	5	157165621	157165621	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	157165621	157165621	G	A	SNP	CLINT1	NM_014666	human	genbank	54_36p	-1	validated	missense	c.773	p.T258M	1	NULL	"superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273"	-	no_errors
CLINT1	9685	broad.mit.edu	36	5	157169305	157169305	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	157169305	157169305	C	T	SNP	CLINT1	NM_014666	human	genbank	54_36p	-1	validated	missense	c.604	p.G202S	1	NULL	"HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273"	-	no_errors
EBF1	1879	broad.mit.edu	36	5	158456626	158456626	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	158456626	158456626	G	A	SNP	EBF1	NM_024007	human	genbank	54_36p	-1	validated	silent	c.225	p.Y75	1	NULL	"PatternScan_COE,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
RNF145	153830	broad.mit.edu	36	5	158520861	158520861	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	158520861	158520861	G	A	SNP	RNF145	NM_144726	human	genbank	54_36p	-1	provisional	silent	c.1701	p.I567	1	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
ATP10B	23120	broad.mit.edu	36	5	159949258	159949258	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	159949258	159949258	A	C	SNP	ATP10B	NM_025153	human	genbank	54_36p	-1	validated	missense	c.3669	p.D1223E	0.03	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3"	-	no_errors
ATP10B	23120	broad.mit.edu	36	5	159981990	159982020	+	Frame_Shift_Del	DEL	GCTCGGTGGTTGTGGACACCATGACAGAGTT	-	GCTCGGTGGTTGTGGACACCATGACAGAGTT	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	GCTCGGTGGTTGTGGACACCATGACAGAGTT	GCTCGGTGGTTGTGGACACCATGACAGAGTT	-	-	GCTCGGTGGTTGTGGACACCATGACAGAGTT	GCTCGGTGGTTGTGGACACCATGACAGAGTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	5	159981990	159982020	GCTCGGTGGTTGTGGACACCATGACAGAGTT	-	DEL	ATP10B	NM_025153	human	genbank	54_36p	-1	validated	frame_shift_del	c.1801_1771	p.N591fs	0.995:0.892:0.888:0.848:0.430:0.621:0.632:0.547:0.837:0.829:0.840:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.513:0.975:0.996:1.000:1.000:1.000	superfamily_HAD-like	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3"	"(deletion:cds_exon[159981979,159982170])"	no_errors
GABRA6	2559	broad.mit.edu	36	5	161049874	161049874	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	161049874	161049874	G	C	SNP	GABRA6	NM_000811	human	genbank	54_36p	1	reviewed	missense	c.763	p.V255L	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
GABRA6	2559	broad.mit.edu	36	5	161049887	161049887	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	161049887	161049887	A	G	SNP	GABRA6	NM_000811	human	genbank	54_36p	1	reviewed	missense	c.776	p.Q259R	1	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GABRA6	2559	broad.mit.edu	36	5	161061197	161061197	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	161061197	161061197	C	T	SNP	GABRA6	NM_000811	human	genbank	54_36p	1	reviewed	missense	c.1202	p.P401L	0.21	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
GABRG2	2566	broad.mit.edu	36	5	161508812	161508812	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	161508812	161508812	C	G	SNP	GABRG2	NM_198904	human	genbank	54_36p	1	reviewed	missense	c.1043	p.S348C	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
ODZ2	57451	broad.mit.edu	36	5	167450237	167450237	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	167450237	167450237	C	A	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	silent	c.1596	p.T532	0.69	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ODZ2	57451	broad.mit.edu	36	5	167577995	167577995	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	167577995	167577995	C	T	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	silent	c.4518	p.N1506	0.91	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
ODZ2	57451	broad.mit.edu	36	5	167585814	167585814	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	167585814	167585814	C	A	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	missense	c.5249	p.S1750Y	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
ODZ2	57451	broad.mit.edu	36	5	167607395	167607395	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	167607395	167607395	C	G	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	1	known	missense	c.6870	p.N2290K	1	HMMPfam_RHS_repeat	###############################################################################################################################################################################################################################################################	-	no_errors
WWC1	23286	broad.mit.edu	36	5	167824343	167824343	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	167824343	167824343	G	A	SNP	WWC1	NM_015238	human	genbank	54_36p	1	provisional	missense	c.2948	p.R983H	1	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
RARS	5917	broad.mit.edu	36	5	167861609	167861609	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	167861609	167861609	G	A	SNP	RARS	NM_002887	human	genbank	54_36p	1	reviewed	silent	c.978	p.L326	1	"HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase"	###############################################################################################################################################################################################################################################################	-	no_errors
PANK3	79646	broad.mit.edu	36	5	167923585	167923585	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	167923585	167923585	C	G	SNP	PANK3	NM_024594	human	genbank	54_36p	-1	reviewed	missense	c.699	p.E233D	1	"superfamily_SSF53067,HMMPfam_Fumble"	"superfamily_SSF53067,HMMPfam_Fumble"	-	no_errors
SLIT3	6586	broad.mit.edu	36	5	168045305	168045305	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	168045305	168045305	C	T	SNP	SLIT3	NM_003062	human	genbank	54_36p	-1	validated	missense	c.3520	p.A1174T	0.87	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT3	6586	broad.mit.edu	36	5	168611032	168611032	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	168611032	168611032	G	T	SNP	SLIT3	NM_003062	human	genbank	54_36p	-1	validated	missense	c.207	p.D69E	1	"HMMSmart_SM00369,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
CCDC99	54908	broad.mit.edu	36	5	168958138	168958138	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	168958138	168958138	T	G	SNP	CCDC99	NM_017785	human	genbank	54_36p	1	validated	silent	c.1113	p.L371	1	NULL	NULL	-	no_errors
DOCK2	1794	broad.mit.edu	36	5	169368318	169368318	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	169368318	169368318	G	C	SNP	DOCK2	NM_004946	human	genbank	54_36p	1	validated	missense	c.3222	p.W1074C	1	NULL	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Cytochrome c"	-	no_errors
DOCK2	1794	broad.mit.edu	36	5	169416307	169416307	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	169416307	169416307	G	A	SNP	DOCK2	NM_004946	human	genbank	54_36p	1	validated	missense	c.4337	p.R1446Q	1	NULL	"HMMSmart_SM00326,superfamily_SH3-domain,superfamily_Cytochrome c,HMMPfam_SH3_2"	-	no_errors
KCNMB1	3779	broad.mit.edu	36	5	169738505	169738505	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	169738505	169738505	G	A	SNP	KCNMB1	NM_004137	human	genbank	54_36p	-1	reviewed	silent	c.357	p.D119	0.76	HMMPfam_CaKB	HMMPfam_CaKB	-	no_errors
KCNMB1	3779	broad.mit.edu	36	5	169744940	169744940	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	169744940	169744940	G	C	SNP	KCNMB1	NM_004137	human	genbank	54_36p	-1	reviewed	silent	c.90	p.T30	1	HMMPfam_CaKB	HMMPfam_CaKB	-	no_errors
FBXW11	23291	broad.mit.edu	36	5	171251159	171251159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	5	171251159	171251159	G	A	SNP	FBXW11	NM_012300	human	genbank	54_36p	-1	reviewed	missense	c.706	p.R236C	1	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1"	-	no_errors
STK10	6793	broad.mit.edu	36	5	171412610	171412610	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	171412610	171412610	T	G	SNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	missense	c.2694	p.K898N	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
STK10	6793	broad.mit.edu	36	5	171453036	171453036	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	171453036	171453036	G	T	SNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	silent	c.1539	p.G513	1	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
STK10	6793	broad.mit.edu	36	5	171466249	171466250	+	Missense_Mutation	DNP	CG	CG	AA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	171466249	171466250	CG	AA	DNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	missense	c.768_767	p.T256I	0.956:1.000	"HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase"	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
SH3PXD2B	285590	broad.mit.edu	36	5	171698541	171698541	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	171698541	171698541	A	C	SNP	SH3PXD2B	NM_001017995	human	genbank	54_36p	-1	validated	missense	c.2173	p.S725A	0	NULL	"superfamily_PX,HMMPfam_PX,HMMSmart_PX,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
SH3PXD2B	285590	broad.mit.edu	36	5	171698702	171698702	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	171698702	171698702	C	G	SNP	SH3PXD2B	NM_001017995	human	genbank	54_36p	-1	validated	missense	c.2012	p.R671T	0.29	NULL	"HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PX,HMMSmart_PX,superfamily_PX"	-	no_errors
DUSP1	1843	broad.mit.edu	36	5	172129786	172129786	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	172129786	172129786	G	T	SNP	DUSP1	NM_004417	human	genbank	54_36p	-1	reviewed	missense	c.497	p.T166N	1	NULL	"superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
STC2	8614	broad.mit.edu	36	5	172677475	172677475	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	172677475	172677475	T	A	SNP	STC2	NM_003714	human	genbank	54_36p	-1	reviewed	missense	c.890	p.Y297F	1	NULL	HMMPfam_Stanniocalcin	-	no_errors
CPLX2	10814	broad.mit.edu	36	5	175238527	175238527	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	175238527	175238527	G	C	SNP	CPLX2	NM_001008220	human	genbank	54_36p	1	reviewed	missense	c.42	p.K14N	1	HMMPfam_Synaphin	HMMPfam_Synaphin	-	no_errors
CPLX2	10814	broad.mit.edu	36	5	175239564	175239564	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	175239564	175239564	C	T	SNP	CPLX2	NM_001008220	human	genbank	54_36p	1	reviewed	silent	c.315	p.C105	1	HMMPfam_Synaphin	HMMPfam_Synaphin	-	no_errors
C5orf25	375484	broad.mit.edu	36	5	175673374	175673374	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	175673374	175673374	C	G	SNP	C5orf25	NM_198567	human	genbank	54_36p	1	validated	silent	c.1752	p.T584	0.8	NULL	NULL	-	no_errors
KIAA1191	57179	broad.mit.edu	36	5	175707319	175707319	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	175707319	175707319	A	C	SNP	KIAA1191	NM_001079685	human	genbank	54_36p	-1	validated	missense	c.808	p.L270V	0.89	NULL	NULL	-	no_errors
NOP16	51491	broad.mit.edu	36	5	175743843	175743843	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	175743843	175743843	C	A	SNP	NOP16	NM_016391	human	genbank	54_36p	-1	provisional	nonsense	c.532	p.E178*	0.95	NULL	HMMPfam_Nop16	-	no_errors
CDHR2	54825	broad.mit.edu	36	5	175935757	175935757	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	175935757	175935757	G	A	SNP	PCDH24	NM_017675	human	genbank	54_36p	1	reviewed	missense	c.1159	p.D387N	0	superfamily_Cadherin	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1"	-	no_errors
CDHR2	54825	broad.mit.edu	36	5	175945614	175945614	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	175945614	175945614	C	T	SNP	PCDH24	NM_017675	human	genbank	54_36p	1	reviewed	missense	c.2788	p.P930S	0.08	superfamily_Cadherin	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
GPRIN1	114787	broad.mit.edu	36	5	175957797	175957797	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	175957797	175957797	C	A	SNP	GPRIN1	NM_052899	human	genbank	54_36p	-1	validated	missense	c.1645	p.G549C	0	NULL	NULL	-	no_errors
GPRIN1	114787	broad.mit.edu	36	5	175959196	175959196	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	175959196	175959196	G	T	SNP	GPRIN1	NM_052899	human	genbank	54_36p	-1	validated	silent	c.246	p.S82	1	NULL	NULL	-	no_errors
UNC5A	90249	broad.mit.edu	36	5	176234015	176234015	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	176234015	176234015	G	A	SNP	UNC5A	NM_133369	human	genbank	54_36p	1	validated	missense	c.1220	p.R407H	1	NULL	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
HK3	3101	broad.mit.edu	36	5	176249112	176249112	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	5	176249112	176249112	C	T	SNP	HK3	NM_002115	human	genbank	54_36p	-1	reviewed	missense	c.790	p.D264N	1	"HMMPfam_Hexokinase_2,superfamily_SSF53067"	"superfamily_SSF53067,HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES"	-	no_errors
FGFR4	2264	broad.mit.edu	36	5	176455898	176455898	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	176455898	176455898	G	A	SNP	FGFR4	NM_002011	human	genbank	54_36p	1	reviewed	missense	c.1949	p.R650H	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
NSD1	64324	broad.mit.edu	36	5	176654234	176654234	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	5	176654234	176654234	C	G	SNP	NSD1	NM_022455	human	genbank	54_36p	1	reviewed	missense	c.7259	p.P2420R	1	NULL	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508"	-	no_errors
GRK6	2870	broad.mit.edu	36	5	176790490	176790490	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	176790490	176790490	A	T	SNP	GRK6	NM_002082	human	genbank	54_36p	1	reviewed	missense	c.64	p.N22Y	1	NULL	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X"	-	no_errors
PDLIM7	9260	broad.mit.edu	36	5	176843490	176843490	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	176843490	176843490	G	C	SNP	PDLIM7	NM_005451	human	genbank	54_36p	-1	reviewed	missense	c.1271	p.T424S	1	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,HMMPfam_LIM,PatternScan_LIM_DOMAIN_1"	-	no_errors
DDX41	51428	broad.mit.edu	36	5	176875735	176875735	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	176875735	176875735	C	T	SNP	DDX41	NM_016222	human	genbank	54_36p	-1	reviewed	missense	c.364	p.E122K	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_zf-CCHC"	-	no_errors
RMND5B	64777	broad.mit.edu	36	5	177503619	177503619	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	177503619	177503619	C	G	SNP	RMND5B	NM_022762	human	genbank	54_36p	1	provisional	missense	c.598	p.H200D	1	HMMSmart_SM00668	"HMMSmart_SM00667,HMMSmart_SM00668,HMMSmart_SM00757,superfamily_RING/U-box"	-	no_errors
NHP2	55651	broad.mit.edu	36	5	177509382	177509382	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	177509382	177509382	C	T	SNP	NHP2	NM_017838	human	genbank	54_36p	-1	reviewed	missense	c.400	p.E134K	1	"superfamily_SSF55315,HMMPfam_Ribosomal_L7Ae"	"PatternScan_RIBOSOMAL_L7AE,superfamily_SSF55315,HMMPfam_Ribosomal_L7Ae"	-	no_errors
NHP2	55651	broad.mit.edu	36	5	177509445	177509445	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	177509445	177509445	C	T	SNP	NHP2	NM_017838	human	genbank	54_36p	-1	reviewed	missense	c.337	p.D113N	1	"HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315"	"PatternScan_RIBOSOMAL_L7AE,HMMPfam_Ribosomal_L7Ae,superfamily_SSF55315"	-	no_errors
COL23A1	91522	broad.mit.edu	36	5	177601947	177601947	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	177601947	177601947	C	A	SNP	COL23A1	NM_173465	human	genbank	54_36p	-1	validated	splice_site	c.1494+1	e26+1	1	-	-	-	no_errors
CLK4	57396	broad.mit.edu	36	5	177983020	177983020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	177983020	177983020	G	A	SNP	CLK4	NM_020666	human	genbank	54_36p	-1	reviewed	missense	c.4	p.R2W	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ZNF354B	117608	broad.mit.edu	36	5	178243672	178243672	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	178243672	178243672	T	A	SNP	ZNF354B	NM_058230	human	genbank	54_36p	1	validated	missense	c.1613	p.I538K	0.03	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GRM6	2916	broad.mit.edu	36	5	178346144	178346144	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	178346144	178346144	G	A	SNP	GRM6	NM_000843	human	genbank	54_36p	-1	reviewed	missense	c.1717	p.P573S	1	NULL	"superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GRM6	2916	broad.mit.edu	36	5	178346490	178346490	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	178346490	178346490	G	A	SNP	GRM6	NM_000843	human	genbank	54_36p	-1	reviewed	silent	c.1455	p.G485	0.98	superfamily_SSF53822	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822"	-	no_errors
RUFY1	80230	broad.mit.edu	36	5	178945450	178945450	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	178945450	178945450	C	G	SNP	RUFY1	NM_025158	human	genbank	54_36p	1	validated	missense	c.1004	p.T335S	1	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_RUN,HMMSmart_SM00593,superfamily_FYVE/PHD zinc finger"	-	no_errors
MGAT4B	11282	broad.mit.edu	36	5	179161231	179161231	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	179161231	179161231	T	G	SNP	MGAT4B	NM_054013	human	genbank	54_36p	-1	reviewed	missense	c.398	p.H133P	1	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
SQSTM1	8878	broad.mit.edu	36	5	179183612	179183612	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	179183612	179183612	G	A	SNP	SQSTM1	NM_003900	human	genbank	54_36p	1	reviewed	silent	c.450	p.L150	1	"HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	"HMMSmart_SM00666,HMMPfam_PB1,superfamily_CAD  PB1 domains,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1,superfamily_UBA-like,HMMSmart_SM00165"	-	no_errors
C5orf45	51149	broad.mit.edu	36	5	179197288	179197288	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	179197288	179197288	T	A	SNP	C5orf45	NM_016175	human	genbank	54_36p	-1	validated	silent	c.741	p.P247	0	NULL	NULL	-	no_errors
GFPT2	9945	broad.mit.edu	36	5	179696183	179696183	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	5	179696183	179696183	C	-	DEL	GFPT2	NM_005110	human	genbank	54_36p	-1	provisional	frame_shift_del	c.116	p.G39fs	1	"HMMPfam_GATase_2,superfamily_SSF56235"	"HMMPfam_GATase_2,superfamily_SSF56235,superfamily_SSF53697,HMMPfam_SIS"	"(deletion:cds_exon[179696085,179696183])"	no_errors
FLT4	2324	broad.mit.edu	36	5	179981457	179981457	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	179981457	179981457	C	T	SNP	FLT4	NM_182925	human	genbank	54_36p	-1	reviewed	missense	c.1711	p.G571S	1	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408"	###############################################################################################################################################################################################################################################################	-	no_errors
FLT4	2324	broad.mit.edu	36	5	179985805	179985806	+	Missense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	179985805	179985806	TG	CT	DNP	FLT4	NM_182925	human	genbank	54_36p	-1	reviewed	missense	c.1170_1169	p.T390K	0.959:0.985	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
FLT4	2324	broad.mit.edu	36	5	179991349	179991349	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	179991349	179991349	A	T	SNP	FLT4	NM_182925	human	genbank	54_36p	-1	reviewed	missense	c.94	p.L32M	1	superfamily_Immunoglobulin	###############################################################################################################################################################################################################################################################	-	no_errors
MGAT1	4245	broad.mit.edu	36	5	180151898	180151898	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	5	180151898	180151898	G	A	SNP	MGAT1	NM_002406	human	genbank	54_36p	-1	reviewed	missense	c.680	p.P227L	0.99	"HMMPfam_GNT-I,superfamily_SSF53448"	"HMMPfam_GNT-I,superfamily_SSF53448"	-	no_errors
BTNL9	153579	broad.mit.edu	36	5	180419230	180419230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	180419230	180419230	C	T	SNP	BTNL9	NM_152547	human	genbank	54_36p	1	validated	missense	c.1370	p.A457V	0.57	"HMMPfam_SPRY,HMMSmart_SM00449"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
TRIM7	81786	broad.mit.edu	36	5	180559616	180559616	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	5	180559616	180559616	C	T	SNP	TRIM7	NM_203293	human	genbank	54_36p	-1	reviewed	silent	c.690	p.Q230	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
IRF4	3662	broad.mit.edu	36	6	339886	339887	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	339886	339887	GA	TC	DNP	IRF4	NM_002460	human	genbank	54_36p	1	validated	missense	c.282_283	p.KT94NP	1.000:1.000	"HMMSmart_SM00348,superfamily_Winged helix DNA-binding domain,HMMPfam_IRF"	"HMMSmart_SM00348,superfamily_Winged helix DNA-binding domain,HMMPfam_IRF,PatternScan_IRF,superfamily_SMAD/FHA domain,HMMPfam_IRF-3"	-	no_errors
EXOC2	55770	broad.mit.edu	36	6	498866	498866	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	498866	498866	G	A	SNP	EXOC2	NM_018303	human	genbank	54_36p	-1	reviewed	silent	c.2109	p.F703	1	NULL	"superfamily_Ig_E-set,HMMPfam_TIG"	-	no_errors
EXOC2	55770	broad.mit.edu	36	6	517577	517577	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	517577	517577	C	A	SNP	EXOC2	NM_018303	human	genbank	54_36p	-1	reviewed	missense	c.1386	p.Q462H	1	NULL	"HMMPfam_TIG,superfamily_Ig_E-set"	-	no_errors
FOXC1	2296	broad.mit.edu	36	6	1556120	1556120	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	1556120	1556120	C	T	SNP	FOXC1	NM_001453	human	genbank	54_36p	1	reviewed	silent	c.441	p.G147	1	"HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head"	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
MYLK4	340156	broad.mit.edu	36	6	2616580	2616580	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	2616580	2616580	T	C	SNP	MYLK4	NM_001012418	human	genbank	54_36p	-1	validated	missense	c.1121	p.K374R	0.95	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MYLK4	340156	broad.mit.edu	36	6	2634129	2634129	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	2634129	2634129	G	A	SNP	MYLK4	NM_001012418	human	genbank	54_36p	-1	validated	missense	c.296	p.A99V	0.04	superfamily_Protein kinase-like (PK-like)	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
WRNIP1	56897	broad.mit.edu	36	6	2730292	2730292	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	2730292	2730292	A	T	SNP	WRNIP1	NM_020135	human	genbank	54_36p	1	reviewed	missense	c.1775	p.E592V	1	NULL	"HMMSmart_SM00734,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	-	no_errors
SERPINB1	1992	broad.mit.edu	36	6	2779179	2779179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	2779179	2779179	C	T	SNP	SERPINB1	NM_030666	human	genbank	54_36p	-1	provisional	missense	c.802	p.E268K	0.93	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN"	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
SLC22A23	63027	broad.mit.edu	36	6	3218558	3218558	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	3218558	3218558	G	A	SNP	SLC22A23	NM_021945	human	genbank	54_36p	-1	validated	silent	c.948	p.Y316	1	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
RREB1	6239	broad.mit.edu	36	6	7127296	7127296	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	7127296	7127296	G	C	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	silent	c.153	p.R51	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
RREB1	6239	broad.mit.edu	36	6	7185714	7185714	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	7185714	7185714	A	G	SNP	RREB1	NM_001003699	human	genbank	54_36p	1	validated	missense	c.3853	p.T1285A	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
CAGE1	285782	broad.mit.edu	36	6	7318685	7318685	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	7318685	7318685	G	A	SNP	CAGE1	NM_205864	human	genbank	54_36p	-1	validated	nonsense	c.958	p.Q320*	0.28	NULL	NULL	-	no_errors
RIOK1	83732	broad.mit.edu	36	6	7340356	7340356	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	7340356	7340356	T	C	SNP	RIOK1	NM_031480	human	genbank	54_36p	1	reviewed	silent	c.348	p.F116	1	NULL	"HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1,PatternScan_RIO1"	-	no_errors
DSP	1832	broad.mit.edu	36	6	7520670	7520670	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	7520670	7520670	C	T	SNP	DSP	NM_004415	human	genbank	54_36p	1	reviewed	silent	c.2580	p.V860	0.53	superfamily_Spectrin repeat	"superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	-	no_errors
DSP	1832	broad.mit.edu	36	6	7523100	7523100	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	7523100	7523100	T	C	SNP	DSP	NM_004415	human	genbank	54_36p	1	reviewed	silent	c.2967	p.S989	0.99	"HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat"	-	no_errors
BMP6	654	broad.mit.edu	36	6	7790411	7790411	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	7790411	7790411	A	G	SNP	BMP6	NM_001718	human	genbank	54_36p	1	reviewed	missense	c.704	p.H235R	1	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
GCNT2	2651	broad.mit.edu	36	6	10664686	10664686	+	Missense_Mutation	SNP	G	G	A	rs55786982	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	10664686	10664686	G	A	SNP	GCNT2	NM_001491	human	genbank	54_36p	1	reviewed	missense	c.44	p.S15N	0.01	NULL	HMMPfam_Branch	-	no_errors
GCM2	9247	broad.mit.edu	36	6	10982436	10982436	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	10982436	10982436	C	T	SNP	GCM2	NM_004752	human	genbank	54_36p	-1	reviewed	silent	c.1299	p.P433	0	NULL	"superfamily_GCM_motif,HMMPfam_GCM"	-	no_errors
GCM2	9247	broad.mit.edu	36	6	10983140	10983140	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	10983140	10983140	G	C	SNP	GCM2	NM_004752	human	genbank	54_36p	-1	reviewed	missense	c.595	p.Q199E	0.46	NULL	"HMMPfam_GCM,superfamily_GCM_motif"	-	no_errors
HERV-FRD	405754	broad.mit.edu	36	6	11213451	11213451	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	11213451	11213451	T	C	SNP	HERV-FRD	NM_207582	human	genbank	54_36p	-1	provisional	missense	c.79	p.K27E	0	NULL	HMMPfam_TLV_coat	-	no_errors
HIVEP1	3096	broad.mit.edu	36	6	12232945	12232945	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	12232945	12232945	T	A	SNP	HIVEP1	NM_002114	human	genbank	54_36p	1	validated	missense	c.4931	p.V1644D	0	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GFOD1	54438	broad.mit.edu	36	6	13473240	13473240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	13473240	13473240	C	T	SNP	GFOD1	NM_018988	human	genbank	54_36p	-1	provisional	missense	c.887	p.S296N	1	NULL	"HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain,HMMPfam_GFO_IDH_MocA_C"	-	no_errors
GFOD1	54438	broad.mit.edu	36	6	13473721	13473721	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	13473721	13473721	C	T	SNP	GFOD1	NM_018988	human	genbank	54_36p	-1	provisional	missense	c.406	p.E136K	1	"HMMPfam_GFO_IDH_MocA_C,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain"	"HMMPfam_GFO_IDH_MocA,HMMPfam_GFO_IDH_MocA_C,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain"	-	no_errors
CD83	9308	broad.mit.edu	36	6	14239789	14239789	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	14239789	14239789	G	A	SNP	CD83	NM_004233	human	genbank	54_36p	1	validated	silent	c.213	p.Q71	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	-	no_errors
JARID2	3720	broad.mit.edu	36	6	15620422	15620422	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	15620422	15620422	C	A	SNP	JARID2	NM_004973	human	genbank	54_36p	1	reviewed	missense	c.2957	p.S986Y	1	"HMMSmart_SM00558,HMMPfam_JmjC"	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2"	-	no_errors
MYLIP	29116	broad.mit.edu	36	6	16251255	16251255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	16251255	16251255	G	A	SNP	MYLIP	NM_013262	human	genbank	54_36p	1	reviewed	missense	c.490	p.E164K	1	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	"superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,superfamily_RING/U-box,HMMPfam_zf-C3HC4"	-	no_errors
GMPR	2766	broad.mit.edu	36	6	16398676	16398676	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	16398676	16398676	T	A	SNP	GMPR	NM_006877	human	genbank	54_36p	1	validated	silent	c.702	p.A234	0.99	"superfamily_SSF51412,HMMPfam_IMPDH"	"superfamily_SSF51412,HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED"	-	no_errors
NUP153	9972	broad.mit.edu	36	6	17745743	17745743	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	17745743	17745743	G	C	SNP	NUP153	NM_005124	human	genbank	54_36p	-1	reviewed	missense	c.2084	p.T695S	0.6	NULL	"HMMPfam_Nup153,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,HMMPfam_Nup_retrotrp_bd"	-	no_errors
CDKAL1	54901	broad.mit.edu	36	6	21173343	21173343	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	21173343	21173343	G	C	SNP	CDKAL1	NM_017774	human	genbank	54_36p	1	validated	missense	c.1141	p.V381L	1	"superfamily_Radical SAM enzymes,HMMSmart_SM00729,HMMPfam_Radical_SAM"	"HMMPfam_UPF0004,superfamily_Radical SAM enzymes,HMMSmart_SM00729,PatternScan_UPF0004,HMMPfam_Radical_SAM,HMMPfam_TRAM"	-	no_errors
DCDC2	51473	broad.mit.edu	36	6	24465686	24465686	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	24465686	24465686	T	C	SNP	DCDC2	NM_016356	human	genbank	54_36p	-1	reviewed	missense	c.272	p.Q91R	1	"superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX"	"superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX"	-	no_errors
GMNN	51053	broad.mit.edu	36	6	24892316	24892316	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	24892316	24892316	G	T	SNP	GMNN	NM_015895	human	genbank	54_36p	1	validated	missense	c.297	p.W99C	1	HMMPfam_Geminin	HMMPfam_Geminin	-	no_errors
FAM65B	9750	broad.mit.edu	36	6	24977332	24977332	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	24977332	24977332	T	A	SNP	FAM65B	NM_015864	human	genbank	54_36p	-1	validated	missense	c.383	p.Y128F	1	NULL	NULL	-	no_errors
LRRC16A	55604	broad.mit.edu	36	6	25625596	25625596	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	25625596	25625596	T	C	SNP	LRRC16A	NM_017640	human	genbank	54_36p	1	validated	silent	c.1848	p.F616	1	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
SLC17A1	6568	broad.mit.edu	36	6	25919879	25919879	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	25919879	25919879	G	T	SNP	SLC17A1	NM_005074	human	genbank	54_36p	-1	validated	missense	c.996	p.S332R	0.02	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
SLC17A1	6568	broad.mit.edu	36	6	25934811	25934811	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	25934811	25934811	A	T	SNP	SLC17A1	NM_005074	human	genbank	54_36p	-1	validated	missense	c.64	p.L22M	0	superfamily_MFS general substrate transporter	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SLC17A2	10246	broad.mit.edu	36	6	26024944	26024944	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26024944	26024944	A	C	SNP	SLC17A2	NM_005835	human	genbank	54_36p	-1	provisional	missense	c.878	p.L293R	0.99	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
HIST1H1A	3024	broad.mit.edu	36	6	26125435	26125435	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	26125435	26125435	G	C	SNP	HIST1H1A	NM_005325	human	genbank	54_36p	-1	reviewed	missense	c.505	p.P169A	1	NULL	"HMMSmart_H15,superfamily_SSF46785,HMMPfam_Linker_histone"	-	no_errors
HIST1H1A	3024	broad.mit.edu	36	6	26125656	26125656	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	26125656	26125656	G	C	SNP	HIST1H1A	NM_005325	human	genbank	54_36p	-1	reviewed	missense	c.284	p.T95R	1	"HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785"	"HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785"	-	no_errors
HIST1H1A	3024	broad.mit.edu	36	6	26125728	26125728	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	26125728	26125728	G	A	SNP	HIST1H1A	NM_005325	human	genbank	54_36p	-1	reviewed	missense	c.212	p.A71V	1	"HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785"	"HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785"	-	no_errors
HIST1H3B	8358	broad.mit.edu	36	6	26139918	26139918	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26139918	26139918	C	T	SNP	HIST1H3B	NM_003537	human	genbank	54_36p	-1	reviewed	missense	c.350	p.R117Q	1	"superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H3C	8352	broad.mit.edu	36	6	26153624	26153624	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26153624	26153624	C	G	SNP	HIST1H3C	NM_003531	human	genbank	54_36p	1	reviewed	missense	c.7	p.R3G	1	superfamily_Histone-fold	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H1C	3006	broad.mit.edu	36	6	26164309	26164309	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	26164309	26164309	C	G	SNP	HIST1H1C	NM_005319	human	genbank	54_36p	-1	reviewed	missense	c.327	p.K109N	1	"superfamily_Winged helix DNA-binding domain,HMMPfam_Linker_histone"	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,HMMPfam_Linker_histone"	-	no_errors
HFE	3077	broad.mit.edu	36	6	26199585	26199585	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	26199585	26199585	C	A	SNP	HFE	NM_000410	human	genbank	54_36p	1	reviewed	nonsense	c.405	p.Y135*	0.55	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain"	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMSmart_SM00407,HMMPfam_C1-set,PatternScan_IG_MHC"	-	no_errors
HIST1H1T	3010	broad.mit.edu	36	6	26215966	26215966	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26215966	26215966	C	G	SNP	HIST1H1T	NM_005323	human	genbank	54_36p	-1	reviewed	missense	c.335	p.S112T	1	"superfamily_SSF46785,HMMPfam_Linker_histone"	"superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone"	-	no_errors
HIST1H1E	3008	broad.mit.edu	36	6	26264769	26264769	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26264769	26264769	T	C	SNP	HIST1H1E	NM_005321	human	genbank	54_36p	1	reviewed	missense	c.172	p.S58P	1	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00526,HMMPfam_Linker_histone"	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00526,HMMPfam_Linker_histone"	-	no_errors
HIST1H1E	3008	broad.mit.edu	36	6	26265248	26265248	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	26265248	26265248	G	A	SNP	HIST1H1E	NM_005321	human	genbank	54_36p	1	reviewed	silent	c.651	p.K217	1	NULL	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain"	-	no_errors
HIST1H2BD	3017	broad.mit.edu	36	6	26266441	26266441	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	26266441	26266441	C	G	SNP	HIST1H2BD	NM_021063	human	genbank	54_36p	1	reviewed	missense	c.65	p.A22G	1	superfamily_Histone-fold	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST1H4E	8367	broad.mit.edu	36	6	26313087	26313087	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	26313087	26313087	G	A	SNP	HIST1H4E	NM_003545	human	genbank	54_36p	1	reviewed	missense	c.236	p.R79H	1	"superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
HIST1H2AE	3012	broad.mit.edu	36	6	26325293	26325293	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26325293	26325293	G	A	SNP	HIST1H2AE	NM_021052	human	genbank	54_36p	1	reviewed	missense	c.112	p.G38S	1	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone"	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
HIST1H2BH	8345	broad.mit.edu	36	6	26359862	26359862	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26359862	26359862	C	T	SNP	HIST1H2BH	NM_003524	human	genbank	54_36p	1	reviewed	missense	c.5	p.P2L	1	NULL	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST1H2BH	8345	broad.mit.edu	36	6	26360040	26360040	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26360040	26360040	G	C	SNP	HIST1H2BH	NM_003524	human	genbank	54_36p	1	reviewed	silent	c.183	p.G61	1	"HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold"	"HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold"	-	no_errors
HIST1H3G	8355	broad.mit.edu	36	6	26379451	26379451	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	26379451	26379451	C	T	SNP	HIST1H3G	NM_003534	human	genbank	54_36p	-1	reviewed	silent	c.141	p.V47	1	"superfamily_Histone-fold,HMMSmart_SM00428"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
BTN3A1	11119	broad.mit.edu	36	6	26514145	26514145	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26514145	26514145	C	T	SNP	BTN3A1	NM_007048	human	genbank	54_36p	1	validated	missense	c.115	p.P39S	0.01	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
BTN2A1	11120	broad.mit.edu	36	6	26567866	26567866	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	26567866	26567866	G	C	SNP	BTN2A1	NM_007049	human	genbank	54_36p	1	reviewed	missense	c.261	p.E87D	1	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
HIST1H2BJ	8970	broad.mit.edu	36	6	27208431	27208431	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	27208431	27208431	G	A	SNP	HIST1H2BJ	NM_021058	human	genbank	54_36p	-1	reviewed	silent	c.78	p.D26	1	superfamily_Histone-fold	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
HIST1H2BK	85236	broad.mit.edu	36	6	27222467	27222467	+	Silent	SNP	G	G	A	rs12207760	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	27222467	27222467	G	A	SNP	HIST1H2BK	NM_080593	human	genbank	54_36p	-1	reviewed	silent	c.90	p.R30	1	"superfamily_Histone-fold,HMMSmart_SM00427"	"superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B"	-	no_errors
PRSS16	10279	broad.mit.edu	36	6	27330600	27330600	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	27330600	27330600	C	G	SNP	PRSS16	NM_005865	human	genbank	54_36p	1	reviewed	missense	c.1300	p.P434A	0.4	"HMMPfam_Peptidase_S28,superfamily_SSF53474"	"HMMPfam_Peptidase_S28,superfamily_SSF53474"	-	no_errors
ZNF184	7738	broad.mit.edu	36	6	27527992	27527992	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	27527992	27527992	C	G	SNP	ZNF184	NM_007149	human	genbank	54_36p	-1	validated	missense	c.1325	p.G442A	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	-	no_errors
HIST1H4K	8362	broad.mit.edu	36	6	27907087	27907087	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	27907087	27907087	C	T	SNP	HIST1H4K	NM_003541	human	genbank	54_36p	-1	reviewed	silent	c.198	p.V66	1	"superfamily_Histone-fold,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	"superfamily_Histone-fold,PatternScan_HISTONE_H4,HMMSmart_SM00417,HMMPfam_Histone,HMMSmart_SM00803"	-	no_errors
HIST1H3I	8354	broad.mit.edu	36	6	27947775	27947775	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	27947775	27947775	A	G	SNP	HIST1H3I	NM_003533	human	genbank	54_36p	-1	reviewed	missense	c.298	p.Y100H	1	"superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone"	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H3J	8356	broad.mit.edu	36	6	27966523	27966523	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	27966523	27966523	G	C	SNP	HIST1H3J	NM_003535	human	genbank	54_36p	-1	reviewed	silent	c.27	p.R9	1	superfamily_Histone-fold	"superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2"	-	no_errors
HIST1H2AM	8336	broad.mit.edu	36	6	27968886	27968886	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	27968886	27968886	C	G	SNP	HIST1H2AM	NM_003514	human	genbank	54_36p	-1	reviewed	missense	c.21	p.Q7H	0.99	"superfamily_Histone-fold,HMMSmart_SM00414"	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
ZKSCAN4	387032	broad.mit.edu	36	6	28320943	28320943	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	28320943	28320943	C	G	SNP	ZKSCAN4	NM_019110	human	genbank	54_36p	-1	provisional	missense	c.1568	p.G523A	0.99	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF187	7741	broad.mit.edu	36	6	28351974	28351974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	28351974	28351974	G	A	SNP	ZNF187	NM_001023560	human	genbank	54_36p	1	validated	missense	c.100	p.G34R	0.02	NULL	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PGBD1	84547	broad.mit.edu	36	6	28372645	28372645	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	28372645	28372645	G	A	SNP	PGBD1	NM_032507	human	genbank	54_36p	1	reviewed	missense	c.716	p.R239Q	0.27	NULL	"HMMPfam_SCAN,HMMSmart_SCAN"	-	no_errors
GPX6	257202	broad.mit.edu	36	6	28591423	28591423	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	28591423	28591423	T	G	SNP	GPX6	NM_182701	human	genbank	54_36p	-1	reviewed	missense	c.77	p.Q26P	0	NULL	"superfamily_Thioredoxin-like,HMMPfam_GSHPx,PatternScan_GLUTATHIONE_PEROXID_2"	-	pseudogene
SCAND3	114821	broad.mit.edu	36	6	28649330	28649330	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	28649330	28649330	T	A	SNP	SCAND3	NM_052923	human	genbank	54_36p	-1	provisional	missense	c.2315	p.K772I	1	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_RNaseH_fold,HMMPfam_rve,HMMPfam_hATC"	-	no_errors
SCAND3	114821	broad.mit.edu	36	6	28662466	28662466	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	28662466	28662466	G	A	SNP	SCAND3	NM_052923	human	genbank	54_36p	-1	provisional	missense	c.8	p.A3V	0	NULL	"HMMPfam_rve,HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_hATC,superfamily_RNaseH_fold"	-	no_errors
TRIM27	5987	broad.mit.edu	36	6	28980344	28980344	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	28980344	28980344	A	-	DEL	TRIM27	NM_006510	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1024	p.Y342fs	0.04	HMMSmart_SM00589	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	"(deletion:cds_exon[28979826,28980421])"	no_errors
OR2W1	26692	broad.mit.edu	36	6	29120568	29120568	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29120568	29120568	G	T	SNP	OR2W1	NM_030903	human	genbank	54_36p	-1	validated	missense	c.364	p.R122S	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR14J1	442191	broad.mit.edu	36	6	29382964	29382964	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29382964	29382964	C	A	SNP	OR14J1	NM_030946	human	genbank	54_36p	1	provisional	missense	c.519	p.H173Q	0.22	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5V1	81696	broad.mit.edu	36	6	29431065	29431065	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	29431065	29431065	T	C	SNP	OR5V1	NM_030876	human	genbank	54_36p	-1	validated	missense	c.887	p.D296G	0.91	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5V1	81696	broad.mit.edu	36	6	29431170	29431170	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29431170	29431170	C	T	SNP	OR5V1	NM_030876	human	genbank	54_36p	-1	validated	missense	c.782	p.R261Q	0.04	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR12D3	81797	broad.mit.edu	36	6	29450706	29450706	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29450706	29450706	A	T	SNP	OR12D3	NM_030959	human	genbank	54_36p	-1	provisional	missense	c.338	p.L113Q	0.01	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10C1	442194	broad.mit.edu	36	6	29516691	29516691	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	29516691	29516691	C	T	SNP	OR10C1	NM_013941	human	genbank	54_36p	1	provisional	missense	c.920	p.T307M	0.03	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MAS1L	116511	broad.mit.edu	36	6	29562653	29562653	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29562653	29562653	C	T	SNP	MAS1L	NM_052967	human	genbank	54_36p	-1	provisional	missense	c.1006	p.A336T	0.01	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MAS1L	116511	broad.mit.edu	36	6	29562786	29562786	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29562786	29562786	C	T	SNP	MAS1L	NM_052967	human	genbank	54_36p	-1	provisional	missense	c.873	p.M291I	0	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MAS1L	116511	broad.mit.edu	36	6	29563268	29563268	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29563268	29563268	A	G	SNP	MAS1L	NM_052967	human	genbank	54_36p	-1	provisional	silent	c.391	p.L131	0.01	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
GABBR1	2550	broad.mit.edu	36	6	29697532	29697532	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29697532	29697532	A	G	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	silent	c.1107	p.T369	0.97	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Complement control module/SCR domain,HMMSmart_SM00032,HMMPfam_Sushi,superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_7tm_3"	-	no_errors
GABBR1	2550	broad.mit.edu	36	6	29697547	29697547	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29697547	29697547	T	A	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	silent	c.1092	p.G364	1	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_ANF_receptor,superfamily_Complement control module/SCR domain,HMMPfam_7tm_3,superfamily_Periplasmic binding protein-like I"	-	no_errors
GABBR1	2550	broad.mit.edu	36	6	29706244	29706244	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29706244	29706244	G	A	SNP	GABBR1	NM_001470	human	genbank	54_36p	-1	reviewed	nonsense	c.445	p.Q149*	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_ANF_receptor,superfamily_Complement control module/SCR domain,HMMPfam_7tm_3,superfamily_Periplasmic binding protein-like I"	-	no_errors
ZFP57	346171	broad.mit.edu	36	6	29748583	29748583	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29748583	29748583	G	A	SNP	ZFP57	NM_001109809	human	genbank	54_36p	-1	inferred	silent	c.1224	p.V408	0.04	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFP57	346171	broad.mit.edu	36	6	29748981	29748981	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29748981	29748981	T	G	SNP	ZFP57	NM_001109809	human	genbank	54_36p	-1	inferred	silent	c.826	p.R276	0.09	NULL	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZFP57	346171	broad.mit.edu	36	6	29749153	29749153	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	29749153	29749153	C	G	SNP	ZFP57	NM_001109809	human	genbank	54_36p	-1	inferred	missense	c.654	p.K218N	0.75	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
HLA-G	3135	broad.mit.edu	36	6	29905575	29905575	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	29905575	29905575	A	C	SNP	HLA-G	NM_002127	human	genbank	54_36p	1	reviewed	missense	c.899	p.Q300P	0	superfamily_Immunoglobulin	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
TRIM10	10107	broad.mit.edu	36	6	30229753	30229753	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30229753	30229753	C	T	SNP	TRIM10	NM_006778	human	genbank	54_36p	-1	validated	missense	c.1418	p.R473Q	0.03	"HMMSmart_SM00449,HMMPfam_SPRY"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMSmart_SM00449,HMMPfam_SPRY"	-	no_errors
TRIM10	10107	broad.mit.edu	36	6	30236491	30236491	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30236491	30236491	G	A	SNP	TRIM10	NM_006778	human	genbank	54_36p	-1	validated	missense	c.124	p.R42C	0.02	"HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,HMMSmart_SM00589,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
TRIM26	7726	broad.mit.edu	36	6	30272364	30272364	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30272364	30272364	T	G	SNP	TRIM26	NM_003449	human	genbank	54_36p	-1	validated	missense	c.673	p.K225Q	0	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
RPP21	79897	broad.mit.edu	36	6	30422273	30422273	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30422273	30422273	C	A	SNP	RPP21	NM_024839	human	genbank	54_36p	1	provisional	silent	c.327	p.L109	1	NULL	HMMPfam_Rpr2	-	no_errors
HLA-E	3133	broad.mit.edu	36	6	30565660	30565660	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30565660	30565660	G	T	SNP	HLA-E	NM_005516	human	genbank	54_36p	1	reviewed	missense	c.243	p.W81C	0.99	"HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog"	"HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,HMMPfam_C1-set,superfamily_SSF48726,HMMSmart_IGc1,PatternScan_IG_MHC"	-	no_errors
HLA-E	3133	broad.mit.edu	36	6	30565666	30565666	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30565666	30565666	G	A	SNP	HLA-E	NM_005516	human	genbank	54_36p	1	reviewed	silent	c.249	p.R83	0.04	"HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog"	"HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726"	-	no_errors
HLA-E	3133	broad.mit.edu	36	6	30568322	30568322	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30568322	30568322	G	A	SNP	HLA-E	NM_005516	human	genbank	54_36p	1	reviewed	silent	c.1062	p.E354	0.74	NULL	"HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726"	-	no_errors
GNL1	2794	broad.mit.edu	36	6	30621999	30621999	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30621999	30621999	G	A	SNP	GNL1	NM_005275	human	genbank	54_36p	-1	reviewed	silent	c.1653	p.D551	0.79	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1"	-	no_errors
GNL1	2794	broad.mit.edu	36	6	30622910	30622910	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30622910	30622910	G	A	SNP	GNL1	NM_005275	human	genbank	54_36p	-1	reviewed	missense	c.1399	p.P467S	0.89	NULL	"HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GNL1	2794	broad.mit.edu	36	6	30629164	30629164	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30629164	30629164	G	A	SNP	GNL1	NM_005275	human	genbank	54_36p	-1	reviewed	silent	c.750	p.H250	0.89	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GNL1	2794	broad.mit.edu	36	6	30629215	30629215	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30629215	30629215	A	G	SNP	GNL1	NM_005275	human	genbank	54_36p	-1	reviewed	silent	c.699	p.A233	0.97	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PRR3	80742	broad.mit.edu	36	6	30638222	30638222	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	30638222	30638222	C	G	SNP	PRR3	NM_025263	human	genbank	54_36p	1	validated	missense	c.538	p.H180D	1	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
ABCF1	23	broad.mit.edu	36	6	30658158	30658172	+	In_Frame_Del	DEL	GGAAGAAGGAGAAGG	-	GGAAGAAGGAGAAGG	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	GGAAGAAGGAGAAGG	GGAAGAAGGAGAAGG	-	-	GGAAGAAGGAGAAGG	GGAAGAAGGAGAAGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	30658158	30658172	GGAAGAAGGAGAAGG	-	DEL	ABCF1	NM_001025091	human	genbank	54_36p	1	reviewed	in_frame_del	c.687_701	p.GEGEE232in_frame_del	1.000:0.998:0.987:0.920:0.883:0.805:0.766:0.738:0.719:0.712:0.759:0.765:0.772:0.762:0.359	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	"(deletion:cds_exon[30658150,30658263])"	no_errors
PPP1R10	5514	broad.mit.edu	36	6	30680387	30680387	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	30680387	30680387	G	A	SNP	PPP1R10	NM_002714	human	genbank	54_36p	-1	reviewed	silent	c.1059	p.G353	0.98	NULL	"HMMSmart_SM00509,HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
MRPS18B	28973	broad.mit.edu	36	6	30698627	30698627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30698627	30698627	G	T	SNP	MRPS18B	NM_014046	human	genbank	54_36p	1	reviewed	missense	c.394	p.G132C	1	"superfamily_Ribosomal protein S18,HMMPfam_Ribosomal_S18"	"superfamily_Ribosomal protein S18,HMMPfam_Ribosomal_S18"	-	no_errors
MRPS18B	28973	broad.mit.edu	36	6	30700663	30700663	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30700663	30700663	G	A	SNP	MRPS18B	NM_014046	human	genbank	54_36p	1	reviewed	missense	c.446	p.R149Q	0.99	"HMMPfam_Ribosomal_S18,superfamily_Ribosomal protein S18"	"HMMPfam_Ribosomal_S18,superfamily_Ribosomal protein S18"	-	no_errors
C6orf136	221545	broad.mit.edu	36	6	30728588	30728588	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30728588	30728588	G	A	SNP	C6orf136	NM_001109938	human	genbank	54_36p	1	validated	missense	c.865	p.V289M	0.95	NULL	HMMPfam_DUF2358	-	no_errors
DHX16	8449	broad.mit.edu	36	6	30740925	30740925	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	30740925	30740925	C	T	SNP	DHX16	NM_003587	human	genbank	54_36p	-1	reviewed	missense	c.1027	p.A343T	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
DHX16	8449	broad.mit.edu	36	6	30741282	30741282	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30741282	30741282	G	T	SNP	DHX16	NM_003587	human	genbank	54_36p	-1	reviewed	missense	c.874	p.L292M	1	NULL	"HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DHX16	8449	broad.mit.edu	36	6	30741394	30741394	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30741394	30741394	C	A	SNP	DHX16	NM_003587	human	genbank	54_36p	-1	reviewed	missense	c.762	p.E254D	1	NULL	"HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MDC1	9656	broad.mit.edu	36	6	30779975	30779975	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	30779975	30779975	G	C	SNP	MDC1	NM_014641	human	genbank	54_36p	-1	reviewed	missense	c.4964	p.P1655R	0	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_BRCT domain,HMMPfam_BRCT"	-	no_errors
GTF2H4	2968	broad.mit.edu	36	6	30988154	30988154	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30988154	30988154	G	T	SNP	GTF2H4	NM_001517	human	genbank	54_36p	1	validated	silent	c.1029	p.V343	1	HMMPfam_Tfb2	HMMPfam_Tfb2	-	no_errors
VARS2	57176	broad.mit.edu	36	6	30998902	30998902	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	30998902	30998902	G	A	SNP	VARS2	NM_020442	human	genbank	54_36p	1	provisional	missense	c.2228	p.R743Q	0.97	superfamily_Nucleotidylyl transferase	"PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase"	-	no_errors
VARS2	57176	broad.mit.edu	36	6	30998935	30998935	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	30998935	30998935	G	T	SNP	VARS2	NM_020442	human	genbank	54_36p	1	provisional	missense	c.2261	p.R754L	0.99	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	"PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase"	-	no_errors
MUC21	394263	broad.mit.edu	36	6	31059720	31059720	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	31059720	31059720	G	A	SNP	MUC21	NM_001010909	human	genbank	54_36p	1	validated	silent	c.6	p.K2	0.52	NULL	NULL	-	no_errors
MUC21	394263	broad.mit.edu	36	6	31062239	31062239	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31062239	31062239	G	A	SNP	MUC21	NM_001010909	human	genbank	54_36p	1	validated	missense	c.308	p.S103N	0.79	NULL	NULL	-	no_errors
MUC21	394263	broad.mit.edu	36	6	31062412	31062412	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	31062412	31062412	G	A	SNP	MUC21	NM_001010909	human	genbank	54_36p	1	validated	missense	c.481	p.E161K	0	NULL	NULL	-	no_errors
PSORS1C2	170680	broad.mit.edu	36	6	31213944	31213944	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	31213944	31213944	G	C	SNP	PSORS1C2	NM_014069	human	genbank	54_36p	-1	validated	silent	c.174	p.P58	1	NULL	NULL	-	no_errors
BAT1	7919	broad.mit.edu	36	6	31606559	31606559	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31606559	31606559	C	G	SNP	BAT1	NM_004640	human	genbank	54_36p	-1	reviewed	missense	c.1246	p.D416H	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
BAT1	7919	broad.mit.edu	36	6	31616213	31616213	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31616213	31616213	C	T	SNP	BAT1	NM_004640	human	genbank	54_36p	-1	reviewed	missense	c.76	p.G26R	0.98	NULL	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AIF1	199	broad.mit.edu	36	6	31692100	31692100	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31692100	31692100	A	T	SNP	AIF1	NM_001623	human	genbank	54_36p	1	reviewed	missense	c.197	p.D66V	1	superfamily_EF-hand	superfamily_EF-hand	-	no_errors
BAT2	7916	broad.mit.edu	36	6	31703919	31703919	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31703919	31703919	G	T	SNP	BAT2	NM_080686	human	genbank	54_36p	1	reviewed	silent	c.1689	p.V563	0.48	NULL	HMMPfam_BAT2_N	-	no_errors
BAT2	7916	broad.mit.edu	36	6	31711457	31711457	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	31711457	31711457	C	T	SNP	BAT2	NM_080686	human	genbank	54_36p	1	reviewed	silent	c.5493	p.R1831	0.92	NULL	HMMPfam_BAT2_N	-	no_errors
BAT3	7917	broad.mit.edu	36	6	31715337	31715337	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	31715337	31715337	G	A	SNP	BAT3	NM_004639	human	genbank	54_36p	-1	reviewed	silent	c.3222	p.A1074	0.99	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	-	no_errors
C6orf47	57827	broad.mit.edu	36	6	31735240	31735240	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31735240	31735240	A	T	SNP	C6orf47	NM_021184	human	genbank	54_36p	-1	validated	nonsense	c.464	p.L155*	1	NULL	NULL	-	no_errors
CLIC1	1192	broad.mit.edu	36	6	31812045	31812045	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31812045	31812045	T	C	SNP	CLIC1	NM_001288	human	genbank	54_36p	-1	reviewed	silent	c.12	p.E4	0.98	NULL	"superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain"	-	no_errors
MSH5	4439	broad.mit.edu	36	6	31835702	31835702	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	31835702	31835702	A	G	SNP	MSH5	NM_025259	human	genbank	54_36p	1	reviewed	silent	c.1707	p.Q569	0.02	"HMMSmart_MUTSd,HMMPfam_MutS_V,superfamily_SSF52540"	"HMMPfam_MutS_III,superfamily_DNA_repair_MutS_domIII,HMMSmart_MUTSd,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_SSF52540,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2"	-	no_errors
MSH5	4439	broad.mit.edu	36	6	31835858	31835858	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	31835858	31835858	G	T	SNP	MSH5	NM_025259	human	genbank	54_36p	1	reviewed	missense	c.1749	p.M583I	1	"HMMPfam_MutS_V,HMMSmart_MUTSd,superfamily_SSF52540"	"HMMPfam_MutS_V,HMMSmart_MUTSac,PatternScan_DNA_MISMATCH_REPAIR_2,HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV,superfamily_SSF52540"	-	no_errors
C6orf27	80737	broad.mit.edu	36	6	31842069	31842069	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31842069	31842069	C	T	SNP	C6orf27	NM_025258	human	genbank	54_36p	-1	validated	silent	c.2256	p.S752	0.92	NULL	"HMMSmart_VWA,superfamily_SSF53300"	-	no_errors
C6orf27	80737	broad.mit.edu	36	6	31844873	31844873	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31844873	31844873	G	C	SNP	C6orf27	NM_025258	human	genbank	54_36p	-1	validated	nonsense	c.1404	p.Y468*	0.05	HMMSmart_VWA	"HMMSmart_VWA,superfamily_SSF53300"	-	no_errors
HSPA1L	3305	broad.mit.edu	36	6	31886415	31886415	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	31886415	31886415	G	T	SNP	HSPA1L	NM_005527	human	genbank	54_36p	-1	reviewed	silent	c.1314	p.P438	0.87	"HMMPfam_HSP70,superfamily_SSF100920"	"superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934"	-	no_errors
HSPA1L	3305	broad.mit.edu	36	6	31886993	31886993	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31886993	31886993	C	G	SNP	HSPA1L	NM_005527	human	genbank	54_36p	-1	reviewed	missense	c.736	p.E246Q	1	"HMMPfam_HSP70,superfamily_SSF53067"	"HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934,superfamily_SSF53067"	-	no_errors
HSPA1A	3303	broad.mit.edu	36	6	31893249	31893249	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	31893249	31893249	G	A	SNP	HSPA1A	NM_005345	human	genbank	54_36p	1	reviewed	silent	c.1737	p.S579	0.99	"HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain"	"superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain"	-	no_errors
SLC44A4	80736	broad.mit.edu	36	6	31939439	31939439	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	31939439	31939439	T	C	SNP	SLC44A4	NM_025257	human	genbank	54_36p	-1	validated	missense	c.2077	p.K693E	1	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
EHMT2	10919	broad.mit.edu	36	6	31963609	31963609	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	31963609	31963609	A	C	SNP	EHMT2	NM_006709	human	genbank	54_36p	-1	reviewed	silent	c.1854	p.L618	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
CYP21A2	1589	broad.mit.edu	36	6	32114262	32114262	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	32114262	32114262	C	T	SNP	CYP21A2	ENST00000402288	human	ensembl	54_36p	1	known	missense	c.82	p.P28S	0.02	NULL	NULL	-	no_errors
TNXB	7148	broad.mit.edu	36	6	32137896	32137925	+	Splice_Site	DEL	CCCATCGTCCACTCACCTGTCACCCCGATG	-	CCCATCGTCCACTCACCTGTCACCCCGATG	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	CCCATCGTCCACTCACCTGTCACCCCGATG	CCCATCGTCCACTCACCTGTCACCCCGATG	-	-	CCCATCGTCCACTCACCTGTCACCCCGATG	CCCATCGTCCACTCACCTGTCACCCCGATG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	32137896	32137925	CCCATCGTCCACTCACCTGTCACCCCGATG	-	DEL	TNXB	NM_019105	human	genbank	54_36p	-1	reviewed	splice_site_del	c.7354+15_7354+1	e21-1	0.005:0.008:0.010:0.012:0.008:0.008:0.083:0.129:0.266:0.673:0.803:0.834:0.836:0.628:0.623:0.583:0.396:0.139:0.137:0.105:0.068:0.034:0.021:0.018:0.019:0.012:0.002:0.002:0.005:0.093	-	-	"(deletion:intron[32137470,32137911], cds_exon[32137912,32138208])"	no_errors
TNXB	7148	broad.mit.edu	36	6	32155002	32155002	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	32155002	32155002	C	T	SNP	TNXB	NM_019105	human	genbank	54_36p	-1	reviewed	silent	c.4422	p.S1474	0.98	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
TNXB	7148	broad.mit.edu	36	6	32161706	32161706	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	32161706	32161706	C	A	SNP	TNXB	NM_019105	human	genbank	54_36p	-1	reviewed	missense	c.3208	p.A1070S	0.83	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH4	4855	broad.mit.edu	36	6	32271779	32271779	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	32271779	32271779	G	T	SNP	NOTCH4	NM_004557	human	genbank	54_36p	-1	reviewed	missense	c.5425	p.Q1809K	1	superfamily_Ankyrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
HLA-DRA	3122	broad.mit.edu	36	6	32518414	32518414	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	32518414	32518414	G	A	SNP	HLA-DRA	NM_019111	human	genbank	54_36p	1	reviewed	missense	c.294	p.M98I	0.95	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_alpha"	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_alpha,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
TAP2	6891	broad.mit.edu	36	6	32911441	32911441	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	32911441	32911441	G	T	SNP	TAP2	NM_018833	human	genbank	54_36p	-1	reviewed	silent	c.696	p.S232	0	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane"	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
BRD2	6046	broad.mit.edu	36	6	33052440	33052440	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33052440	33052440	C	T	SNP	BRD2	NM_005104	human	genbank	54_36p	1	reviewed	missense	c.949	p.R317C	0.98	NULL	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
BRD2	6046	broad.mit.edu	36	6	33052576	33052577	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	-	-	T	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	33052576	33052577	-	T	INS	BRD2	NM_005104	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1085_1086	p.K363fs	1.000:0.998	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
HLA-DPB1	3115	broad.mit.edu	36	6	33151827	33151827	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33151827	33151827	C	A	SNP	HLA-DPB1	NM_002121	human	genbank	54_36p	1	reviewed	silent	c.31	p.R11	0	superfamily_MHC antigen-recognition domain	"superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_beta,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
COL11A2	1302	broad.mit.edu	36	6	33248297	33248297	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	33248297	33248297	T	A	SNP	COL11A2	NM_080680	human	genbank	54_36p	-1	reviewed	missense	c.2886	p.K962N	1	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL11A2	1302	broad.mit.edu	36	6	33249789	33249789	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	33249789	33249789	G	A	SNP	COL11A2	NM_080680	human	genbank	54_36p	-1	reviewed	missense	c.2506	p.P836S	1	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00282,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
RXRB	6257	broad.mit.edu	36	6	33273584	33273584	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	33273584	33273584	C	T	SNP	RXRB	NM_021976	human	genbank	54_36p	-1	reviewed	silent	c.753	p.K251	1	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
RING1	6015	broad.mit.edu	36	6	33287050	33287050	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	33287050	33287050	C	T	SNP	RING1	NM_002931	human	genbank	54_36p	1	reviewed	missense	c.593	p.P198L	0.39	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
VPS52	6293	broad.mit.edu	36	6	33344342	33344342	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33344342	33344342	G	C	SNP	VPS52	NM_022553	human	genbank	54_36p	-1	reviewed	missense	c.611	p.A204G	1	HMMPfam_Vps52	HMMPfam_Vps52	-	no_errors
B3GALT4	8705	broad.mit.edu	36	6	33353220	33353220	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	33353220	33353220	C	G	SNP	B3GALT4	NM_003782	human	genbank	54_36p	1	reviewed	missense	c.46	p.L16V	0	NULL	"HMMPfam_Galactosyl_T,PatternScan_PARATHYROID"	-	no_errors
RGL2	5863	broad.mit.edu	36	6	33369221	33369221	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	33369221	33369221	C	T	SNP	RGL2	NM_004761	human	genbank	54_36p	-1	provisional	missense	c.1663	p.G555R	0.01	NULL	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314"	-	no_errors
TAPBP	6892	broad.mit.edu	36	6	33380127	33380127	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33380127	33380127	G	A	SNP	TAPBP	NM_003190	human	genbank	54_36p	-1	reviewed	missense	c.1135	p.R379C	0.05	"superfamily_SSF48726,HMMPfam_C1-set"	"superfamily_SSF48726,HMMPfam_C1-set"	-	no_errors
TAPBP	6892	broad.mit.edu	36	6	33381037	33381037	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	33381037	33381037	G	A	SNP	TAPBP	NM_003190	human	genbank	54_36p	-1	reviewed	missense	c.575	p.A192V	0	NULL	"HMMPfam_C1-set,superfamily_SSF48726"	-	no_errors
SYNGAP1	8831	broad.mit.edu	36	6	33507998	33507998	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33507998	33507998	C	T	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	silent	c.333	p.F111	1	HMMSmart_SM00233	"HMMSmart_SM00233,superfamily_PH domain-like,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1"	-	no_errors
SYNGAP1	8831	broad.mit.edu	36	6	33519227	33519227	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33519227	33519227	G	A	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	missense	c.2875	p.D959N	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like"	-	no_errors
SYNGAP1	8831	broad.mit.edu	36	6	33519423	33519423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33519423	33519423	T	C	SNP	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	missense	c.3071	p.I1024T	0.92	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00233,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_PH domain-like"	-	no_errors
SYNGAP1	8831	broad.mit.edu	36	6	33519653	33519661	+	In_Frame_Del	DEL	GGGGGCAGC	-	GGGGGCAGC	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	GGGGGCAGC	GGGGGCAGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	33519653	33519661	GGGGGCAGC	-	DEL	SYNGAP1	NM_006772	human	genbank	54_36p	1	validated	in_frame_del	c.3301_3309	p.GGS1104in_frame_del	0.999:1.000:1.000:1.000:1.000:0.997:0.993:0.993:0.994	NULL	"HMMSmart_SM00233,superfamily_PH domain-like,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1"	"(deletion:cds_exon[33518644,33519715])"	no_errors
ITPR3	3710	broad.mit.edu	36	6	33747782	33747782	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	33747782	33747782	A	G	SNP	ITPR3	NM_002224	human	genbank	54_36p	1	validated	splice_site	c.2729-2	e22-2	1	-	-	-	no_errors
ITPR3	3710	broad.mit.edu	36	6	33756419	33756419	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	33756419	33756419	A	G	SNP	ITPR3	NM_002224	human	genbank	54_36p	1	validated	missense	c.4460	p.N1487S	1	NULL	"HMMPfam_Ins145_P3_rec,superfamily_MIR,HMMSmart_MIR,HMMPfam_MIR,superfamily_SSF100909,HMMPfam_RYDR_ITPR,HMMPfam_RIH_assoc,HMMPfam_Ion_trans"	-	no_errors
SPDEF	25803	broad.mit.edu	36	6	34620121	34620121	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	34620121	34620121	C	A	SNP	SPDEF	NM_012391	human	genbank	54_36p	-1	provisional	missense	c.90	p.K30N	0.76	NULL	"superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
UHRF1BP1	54887	broad.mit.edu	36	6	34934094	34934094	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	34934094	34934094	G	C	SNP	UHRF1BP1	NM_017754	human	genbank	54_36p	1	validated	silent	c.1983	p.L661	0.96	NULL	NULL	-	no_errors
ANKS1A	23294	broad.mit.edu	36	6	35058566	35058566	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	35058566	35058566	A	C	SNP	ANKS1A	NM_015245	human	genbank	54_36p	1	validated	missense	c.792	p.Q264H	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"HMMPfam_Ank,superfamily_ANK,HMMSmart_ANK,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID"	-	no_errors
ANKS1A	23294	broad.mit.edu	36	6	35159259	35159259	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	35159259	35159259	G	C	SNP	ANKS1A	NM_015245	human	genbank	54_36p	1	validated	splice_site	c.2994+1	e20+1	1	-	-	-	no_errors
ZNF76	7629	broad.mit.edu	36	6	35370316	35370317	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	35370316	35370317	GC	AA	DNP	ZNF76	NM_003427	human	genbank	54_36p	1	provisional	missense	c.1600_1601	p.A534K	1.000:1.000	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RPL10A	4736	broad.mit.edu	36	6	35544190	35544190	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	35544190	35544190	A	G	SNP	RPL10A	NM_007104	human	genbank	54_36p	1	reviewed	missense	c.1	p.M1V	0.8	NULL	"superfamily_Ribosomal protein L1,HMMPfam_Ribosomal_L1,PatternScan_RIBOSOMAL_L1"	-	no_errors
TEAD3	7005	broad.mit.edu	36	6	35562328	35562328	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	35562328	35562328	A	C	SNP	TEAD3	ENST00000402886	human	ensembl	54_36p	-1	known	missense	c.38	p.M13R	0.99	HMMPfam_TEA	HMMPfam_TEA	-	no_errors
TULP1	7287	broad.mit.edu	36	6	35579397	35579397	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	35579397	35579397	C	G	SNP	TULP1	NM_003322	human	genbank	54_36p	-1	reviewed	missense	c.1240	p.G414R	1	"superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub"	"superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2"	-	no_errors
SLC26A8	116369	broad.mit.edu	36	6	36027027	36027028	+	Missense_Mutation	DNP	AC	AC	TG	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	36027027	36027028	AC	TG	DNP	SLC26A8	NM_052961	human	genbank	54_36p	-1	reviewed	missense	c.2363_2362	p.V788H	0.990:0.983	"HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa"	"HMMPfam_Sulfate_transp,HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa"	-	no_errors
SLC26A8	116369	broad.mit.edu	36	6	36095275	36095275	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	36095275	36095275	C	G	SNP	SLC26A8	NM_052961	human	genbank	54_36p	-1	reviewed	missense	c.188	p.R63P	0.97	NULL	"HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa,HMMPfam_Sulfate_transp"	-	no_errors
MAPK14	1432	broad.mit.edu	36	6	36103942	36103942	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	36103942	36103942	G	C	SNP	MAPK14	NM_001315	human	genbank	54_36p	1	reviewed	silent	c.30	p.R10	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK"	-	no_errors
BRPF3	27154	broad.mit.edu	36	6	36293673	36293673	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	36293673	36293673	C	T	SNP	BRPF3	NM_015695	human	genbank	54_36p	1	validated	silent	c.2991	p.G997	0.93	NULL	"HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,superfamily_SSF63748,HMMPfam_PWWP,HMMSmart_PWWP"	-	no_errors
C6orf222	389384	broad.mit.edu	36	6	36399072	36399072	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	36399072	36399072	G	A	SNP	C6orf222	NM_001010903	human	genbank	54_36p	-1	predicted	missense	c.1447	p.R483W	0	NULL	NULL	-	no_errors
KCTD20	222658	broad.mit.edu	36	6	36557492	36557492	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	36557492	36557492	A	T	SNP	KCTD20	NM_173562	human	genbank	54_36p	1	provisional	silent	c.834	p.P278	1	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	-	no_errors
KCTD20	222658	broad.mit.edu	36	6	36557496	36557496	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	36557496	36557496	G	C	SNP	KCTD20	NM_173562	human	genbank	54_36p	1	provisional	missense	c.838	p.G280R	1	NULL	"HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain"	-	no_errors
STK38	11329	broad.mit.edu	36	6	36574117	36574117	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	36574117	36574117	C	T	SNP	STK38	NM_007271	human	genbank	54_36p	-1	provisional	splice_site	c.1076+1	e10+1	1	-	-	-	no_errors
FGD2	221472	broad.mit.edu	36	6	37096296	37096296	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	37096296	37096296	T	G	SNP	FGD2	NM_173558	human	genbank	54_36p	1	validated	missense	c.1124	p.V375G	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
RNF8	9025	broad.mit.edu	36	6	37466509	37466509	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	37466509	37466509	C	T	SNP	RNF8	NM_183078	human	genbank	54_36p	1	reviewed	missense	c.1250	p.S417F	0.17	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA"	-	no_errors
FTSJD2	23070	broad.mit.edu	36	6	37526034	37526034	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	37526034	37526034	T	C	SNP	FTSJD2	NM_015050	human	genbank	54_36p	1	validated	silent	c.474	p.F158	1	NULL	"HMMSmart_SM00443,HMMPfam_G-patch,HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1"	-	no_errors
GLO1	2739	broad.mit.edu	36	6	38778750	38778750	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	38778750	38778750	C	T	SNP	GLO1	NM_006708	human	genbank	54_36p	-1	reviewed	missense	c.59	p.C20Y	1	superfamily_SSF54593	"superfamily_SSF54593,HMMPfam_Glyoxalase,PatternScan_GLYOXALASE_I_1,PatternScan_GLYOXALASE_I_2"	-	no_errors
GLO1	2739	broad.mit.edu	36	6	38778781	38778781	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	38778781	38778781	C	A	SNP	GLO1	NM_006708	human	genbank	54_36p	-1	reviewed	missense	c.28	p.G10C	0.99	superfamily_SSF54593	"HMMPfam_Glyoxalase,PatternScan_GLYOXALASE_I_1,PatternScan_GLYOXALASE_I_2,superfamily_SSF54593"	-	no_errors
DNAH8	1769	broad.mit.edu	36	6	38949054	38949054	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	38949054	38949054	T	C	SNP	DNAH8	NM_001371	human	genbank	54_36p	1	validated	missense	c.6893	p.F2298S	1	NULL	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DNAH8	1769	broad.mit.edu	36	6	38975645	38975645	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	38975645	38975645	A	C	SNP	DNAH8	NM_001371	human	genbank	54_36p	1	validated	missense	c.8528	p.Q2843P	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH8	1769	broad.mit.edu	36	6	39027108	39027108	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	39027108	39027108	A	T	SNP	DNAH8	NM_001371	human	genbank	54_36p	1	validated	missense	c.11634	p.R3878S	1	HMMPfam_Dynein_heavy	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KCNK17	89822	broad.mit.edu	36	6	39380357	39380357	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	39380357	39380357	G	A	SNP	KCNK17	NM_031460	human	genbank	54_36p	-1	reviewed	silent	c.405	p.F135	1	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	-	no_errors
DAAM2	23500	broad.mit.edu	36	6	39954010	39954010	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	39954010	39954010	G	A	SNP	DAAM2	NM_015345	human	genbank	54_36p	1	validated	missense	c.1355	p.R452Q	1	NULL	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	-	no_errors
MOCS1	4337	broad.mit.edu	36	6	39985574	39985574	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	39985574	39985574	T	C	SNP	MOCS1	NM_005942	human	genbank	54_36p	-1	reviewed	missense	c.1085	p.K362R	1	"superfamily_SSF102114,HMMPfam_Mob_synth_C"	"superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM,PatternScan_MOAA_NIFB_PQQE,HMMPfam_Mob_synth_C,superfamily_MoaC,HMMPfam_MoaC"	-	no_errors
LRFN2	57497	broad.mit.edu	36	6	40508130	40508130	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	40508130	40508130	G	T	SNP	LRFN2	NM_020737	human	genbank	54_36p	-1	provisional	missense	c.701	p.P234H	0.97	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
UNC5CL	222643	broad.mit.edu	36	6	41110695	41110695	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	41110695	41110695	A	G	SNP	UNC5CL	NM_173561	human	genbank	54_36p	-1	provisional	missense	c.97	p.W33R	0.98	NULL	"HMMPfam_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
UNC5CL	222643	broad.mit.edu	36	6	41110776	41110776	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	41110776	41110776	T	C	SNP	UNC5CL	NM_173561	human	genbank	54_36p	-1	provisional	missense	c.16	p.S6G	0.04	NULL	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,superfamily_DEATH_like"	-	no_errors
TREM2	54209	broad.mit.edu	36	6	41234688	41234688	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	41234688	41234688	G	A	SNP	TREM2	NM_018965	human	genbank	54_36p	-1	reviewed	missense	c.577	p.L193F	0.86	NULL	"HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
TFEB	7942	broad.mit.edu	36	6	41763652	41763652	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	41763652	41763652	C	G	SNP	TFEB	NM_007162	human	genbank	54_36p	-1	provisional	silent	c.642	p.A214	0.19	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
USP49	25862	broad.mit.edu	36	6	41879597	41879597	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	41879597	41879597	G	A	SNP	USP49	NM_018561	human	genbank	54_36p	-1	provisional	missense	c.1486	p.L496F	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP49	25862	broad.mit.edu	36	6	41882255	41882255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	41882255	41882255	G	A	SNP	USP49	NM_018561	human	genbank	54_36p	-1	provisional	missense	c.445	p.R149C	1	NULL	"HMMPfam_UCH,HMMPfam_zf-UBP,HMMSmart_SM00290,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
TAF8	129685	broad.mit.edu	36	6	42153255	42153255	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	42153255	42153255	C	T	SNP	TAF8	NM_138572	human	genbank	54_36p	1	reviewed	silent	c.927	p.L309	1	NULL	"HMMPfam_Bromo_TP,HMMSmart_SM00576,superfamily_Histone-fold,HMMPfam_TAF8_C"	-	no_errors
TRERF1	55809	broad.mit.edu	36	6	42339057	42339057	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	42339057	42339057	C	T	SNP	TRERF1	NM_033502	human	genbank	54_36p	-1	reviewed	silent	c.1863	p.S621	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
UBR2	23304	broad.mit.edu	36	6	42731385	42731385	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	42731385	42731385	G	C	SNP	UBR2	NM_015255	human	genbank	54_36p	1	provisional	missense	c.2818	p.E940Q	1	NULL	"PatternScan_LIPOCALIN,HMMPfam_zf-UBR,HMMSmart_SM00396,superfamily_ClpS-like,HMMPfam_ClpS,PatternScan_RCC1_2"	-	no_errors
UBR2	23304	broad.mit.edu	36	6	42758817	42758817	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	42758817	42758817	G	T	SNP	UBR2	NM_015255	human	genbank	54_36p	1	provisional	missense	c.4765	p.D1589Y	1	NULL	"PatternScan_RCC1_2,PatternScan_LIPOCALIN,HMMPfam_zf-UBR,HMMPfam_ClpS,HMMSmart_SM00396,superfamily_ClpS-like"	-	no_errors
PRPH2	5961	broad.mit.edu	36	6	42797500	42797500	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	42797500	42797500	T	C	SNP	PRPH2	NM_000322	human	genbank	54_36p	-1	reviewed	missense	c.551	p.Y184C	1	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,superfamily_Tetraspanin,PatternScan_RDS_ROM1"	-	no_errors
PRPH2	5961	broad.mit.edu	36	6	42797589	42797589	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	42797589	42797589	C	G	SNP	PRPH2	NM_000322	human	genbank	54_36p	-1	reviewed	missense	c.462	p.K154N	1	"superfamily_Tetraspanin,HMMPfam_Tetraspannin"	"superfamily_Tetraspanin,PatternScan_RDS_ROM1,HMMPfam_Tetraspannin"	-	no_errors
KIAA0240	23506	broad.mit.edu	36	6	42927907	42927907	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	42927907	42927907	C	T	SNP	KIAA0240	NM_015349	human	genbank	54_36p	1	validated	silent	c.1939	p.L647	0.99	NULL	NULL	-	no_errors
PTCRA	171558	broad.mit.edu	36	6	42998839	42998839	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	42998839	42998839	T	A	SNP	PTCRA	NM_138296	human	genbank	54_36p	1	validated	missense	c.155	p.V52D	0.01	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
PPP2R5D	5528	broad.mit.edu	36	6	43086428	43086428	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	43086428	43086428	G	T	SNP	PPP2R5D	NM_006245	human	genbank	54_36p	1	reviewed	missense	c.1530	p.E510D	1	HMMPfam_B56	HMMPfam_B56	-	no_errors
CUL7	9820	broad.mit.edu	36	6	43121332	43121332	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	43121332	43121332	T	C	SNP	CUL7	NM_014780	human	genbank	54_36p	-1	validated	missense	c.2833	p.I945V	1	"superfamily_Gal_bind_like,HMMPfam_APC10"	"PatternScan_CULLIN_1,superfamily_Gal_bind_like,HMMPfam_APC10,HMMPfam_Cullin,superfamily_Cullin_homology,superfamily_SSF46785"	-	no_errors
CUL7	9820	broad.mit.edu	36	6	43125345	43125345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43125345	43125345	C	T	SNP	CUL7	NM_014780	human	genbank	54_36p	-1	validated	missense	c.1603	p.V535M	0.97	NULL	"HMMPfam_Cullin,HMMPfam_APC10,superfamily_Gal_bind_like,PatternScan_CULLIN_1,superfamily_Cullin_homology,superfamily_SSF46785"	-	no_errors
KLC4	89953	broad.mit.edu	36	6	43147302	43147302	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43147302	43147302	G	C	SNP	KLC4	NM_201523	human	genbank	54_36p	1	validated	missense	c.1329	p.W443C	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_Rab5-bind,HMMPfam_TPR_1,HMMSmart_SM00028,PatternScan_KINESIN_LIGHT"	-	no_errors
CUL9	23113	broad.mit.edu	36	6	43260447	43260447	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43260447	43260447	G	A	SNP	CUL9	NM_015089	human	genbank	54_36p	1	validated	missense	c.421	p.A141T	0.93	superfamily_ARM repeat	###############################################################################################################################################################################################################################################################	-	no_errors
CUL9	23113	broad.mit.edu	36	6	43262063	43262063	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	43262063	43262063	G	C	SNP	CUL9	NM_015089	human	genbank	54_36p	1	validated	missense	c.1143	p.Q381H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CUL9	23113	broad.mit.edu	36	6	43282121	43282121	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43282121	43282121	C	T	SNP	CUL9	NM_015089	human	genbank	54_36p	1	validated	missense	c.5107	p.R1703C	1	"HMMPfam_Cullin,superfamily_Cullin homology domain"	###############################################################################################################################################################################################################################################################	-	no_errors
CUL9	23113	broad.mit.edu	36	6	43282193	43282193	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	43282193	43282193	G	T	SNP	CUL9	NM_015089	human	genbank	54_36p	1	validated	missense	c.5179	p.A1727S	0.7	"HMMPfam_Cullin,superfamily_Cullin homology domain"	###############################################################################################################################################################################################################################################################	-	no_errors
CUL9	23113	broad.mit.edu	36	6	43282202	43282202	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	43282202	43282202	C	T	SNP	CUL9	NM_015089	human	genbank	54_36p	1	validated	missense	c.5188	p.R1730C	0.96	"HMMPfam_Cullin,superfamily_Cullin homology domain"	###############################################################################################################################################################################################################################################################	-	no_errors
TTBK1	84630	broad.mit.edu	36	6	43338651	43338651	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	43338651	43338651	G	A	SNP	TTBK1	NM_032538	human	genbank	54_36p	1	validated	missense	c.1571	p.S524N	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
TTBK1	84630	broad.mit.edu	36	6	43359650	43359650	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43359650	43359650	C	G	SNP	TTBK1	NM_032538	human	genbank	54_36p	1	validated	missense	c.3194	p.T1065R	0.99	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
ZNF318	24149	broad.mit.edu	36	6	43414883	43414883	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43414883	43414883	C	T	SNP	ZNF318	NM_014345	human	genbank	54_36p	-1	validated	missense	c.4831	p.D1611N	0.05	NULL	"HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF318	24149	broad.mit.edu	36	6	43433287	43433287	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43433287	43433287	C	T	SNP	ZNF318	NM_014345	human	genbank	54_36p	-1	validated	missense	c.743	p.R248Q	0.06	NULL	"HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ABCC10	89845	broad.mit.edu	36	6	43510542	43510542	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43510542	43510542	G	A	SNP	ABCC10	NM_033450	human	genbank	54_36p	1	reviewed	missense	c.1457	p.G486E	1	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane"	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC10	89845	broad.mit.edu	36	6	43514388	43514388	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	43514388	43514388	G	A	SNP	ABCC10	NM_033450	human	genbank	54_36p	1	reviewed	silent	c.1920	p.L640	1	"HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
ABCC10	89845	broad.mit.edu	36	6	43520953	43520953	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43520953	43520953	C	T	SNP	ABCC10	NM_033450	human	genbank	54_36p	1	reviewed	missense	c.2869	p.R957W	1	"HMMPfam_ABC_membrane,superfamily_ABC_TM_1"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
ABCC10	89845	broad.mit.edu	36	6	43523456	43523456	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43523456	43523456	G	A	SNP	ABCC10	NM_033450	human	genbank	54_36p	1	reviewed	silent	c.3678	p.A1226	0.78	superfamily_SSF52540	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
TJAP1	93643	broad.mit.edu	36	6	43579116	43579116	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	43579116	43579116	G	A	SNP	TJAP1	NM_080604	human	genbank	54_36p	1	reviewed	splice_site	c.358-1	e5-1	1	-	-	-	no_errors
XPO5	57510	broad.mit.edu	36	6	43600256	43600256	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	43600256	43600256	G	A	SNP	XPO5	NM_020750	human	genbank	54_36p	-1	validated	silent	c.3408	p.P1136	0.98	NULL	"superfamily_ARM repeat,HMMPfam_Xpo1"	-	no_errors
VEGFA	7422	broad.mit.edu	36	6	43854193	43854193	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	43854193	43854193	C	T	SNP	VEGFA	NM_001025366	human	genbank	54_36p	1	reviewed	missense	c.874	p.H292Y	0.96	"superfamily_Cystine-knot cytokines,HMMSmart_SM00141,HMMPfam_PDGF"	"superfamily_Cystine-knot cytokines,HMMSmart_SM00141,HMMPfam_PDGF,PatternScan_PDGF_1,superfamily_Heparin-binding domain from vascular endothelial growth factor"	-	no_errors
MRPL14	64928	broad.mit.edu	36	6	44189821	44189821	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	44189821	44189821	G	T	SNP	MRPL14	NM_032111	human	genbank	54_36p	-1	reviewed	missense	c.175	p.H59N	1	"HMMPfam_Ribosomal_L14,superfamily_Ribosomal protein L14"	"HMMPfam_Ribosomal_L14,superfamily_Ribosomal protein L14"	-	no_errors
TMEM63B	55362	broad.mit.edu	36	6	44229509	44229509	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	44229509	44229509	G	A	SNP	TMEM63B	NM_018426	human	genbank	54_36p	1	validated	silent	c.2061	p.A687	0.61	HMMPfam_DUF221	HMMPfam_DUF221	-	no_errors
CAPN11	11131	broad.mit.edu	36	6	44253067	44253067	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	44253067	44253067	C	T	SNP	CAPN11	NM_007058	human	genbank	54_36p	1	reviewed	nonsense	c.1237	p.Q413*	1	"HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC35B2	347734	broad.mit.edu	36	6	44331028	44331028	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	44331028	44331028	G	C	SNP	SLC35B2	NM_178148	human	genbank	54_36p	-1	validated	missense	c.692	p.S231C	1	"HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE"	"HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE,PatternScan_COPPER_BLUE"	-	no_errors
TCTE1	202500	broad.mit.edu	36	6	44358180	44358180	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	44358180	44358180	A	C	SNP	TCTE1	NM_182539	human	genbank	54_36p	-1	provisional	missense	c.941	p.L314W	1	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
TCTE1	202500	broad.mit.edu	36	6	44362100	44362100	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	44362100	44362100	C	T	SNP	TCTE1	NM_182539	human	genbank	54_36p	-1	provisional	missense	c.425	p.C142Y	1	NULL	superfamily_SSF52047	-	no_errors
AARS2	57505	broad.mit.edu	36	6	44379046	44379046	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	44379046	44379046	G	A	SNP	AARS2	NM_020745	human	genbank	54_36p	-1	validated	silent	c.2100	p.P700	1	superfamily_Thr/Ala-tRNA-synth_IIc_edit	"superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD"	-	no_errors
AARS2	57505	broad.mit.edu	36	6	44380903	44380903	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	44380903	44380903	C	T	SNP	AARS2	NM_020745	human	genbank	54_36p	-1	validated	missense	c.1445	p.R482Q	0.44	"superfamily_Ala-tRNA-synth_IIc_anticod-bd,HMMPfam_tRNA-synt_2c"	"HMMPfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA-synt_2c,superfamily_SSF55681"	-	no_errors
SUPT3H	8464	broad.mit.edu	36	6	45079473	45079473	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	45079473	45079473	T	C	SNP	SUPT3H	NM_181356	human	genbank	54_36p	-1	provisional	silent	c.432	p.R144	1	NULL	"superfamily_Histone-fold,HMMPfam_TFIID-18kDa"	-	no_errors
SUPT3H	8464	broad.mit.edu	36	6	45079481	45079481	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	45079481	45079481	T	C	SNP	SUPT3H	NM_181356	human	genbank	54_36p	-1	provisional	missense	c.424	p.N142D	0.98	NULL	"HMMPfam_TFIID-18kDa,superfamily_Histone-fold"	-	no_errors
RUNX2	860	broad.mit.edu	36	6	45588070	45588070	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	45588070	45588070	C	A	SNP	RUNX2	NM_001024630	human	genbank	54_36p	1	reviewed	silent	c.1173	p.S391	1	NULL	"HMMPfam_Runt,superfamily_P53_like_DNA_bnd,HMMPfam_RunxI"	-	no_errors
ENPP4	22875	broad.mit.edu	36	6	46216070	46216070	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	46216070	46216070	A	C	SNP	ENPP4	NM_014936	human	genbank	54_36p	1	validated	missense	c.791	p.D264A	1	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	-	no_errors
ENPP4	22875	broad.mit.edu	36	6	46219244	46219244	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	46219244	46219244	C	T	SNP	ENPP4	NM_014936	human	genbank	54_36p	1	validated	missense	c.1270	p.L424F	1	NULL	"HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core"	-	no_errors
CYP39A1	51302	broad.mit.edu	36	6	46671809	46671809	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	46671809	46671809	A	T	SNP	CYP39A1	NM_016593	human	genbank	54_36p	-1	reviewed	missense	c.939	p.D313E	0.35	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450"	-	no_errors
TDRD6	221400	broad.mit.edu	36	6	46766950	46766950	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	46766950	46766950	C	G	SNP	TDRD6	NM_001010870	human	genbank	54_36p	1	provisional	silent	c.3126	p.A1042	0.99	"HMMPfam_TUDOR,superfamily_SSF63748,HMMSmart_TUDOR"	"HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748"	-	no_errors
MEP1A	4224	broad.mit.edu	36	6	46869378	46869378	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	46869378	46869378	T	C	SNP	MEP1A	NM_005588	human	genbank	54_36p	1	validated	silent	c.111	p.F37	0	NULL	"PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Astacin,PatternScan_ZINC_PROTEASE,HMMSmart_MAM,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF"	-	no_errors
GPR116	221395	broad.mit.edu	36	6	46936434	46936434	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	46936434	46936434	G	A	SNP	GPR116	NM_001098518	human	genbank	54_36p	-1	validated	nonsense	c.2356	p.Q786*	0.95	NULL	"PatternScan_EGF_2,superfamily_SEA domain,HMMPfam_SEA,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR110	266977	broad.mit.edu	36	6	47085986	47085986	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	47085986	47085986	G	A	SNP	GPR110	NM_153840	human	genbank	54_36p	-1	validated	missense	c.1144	p.L382F	0.76	NULL	"superfamily_SEA domain,HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
GPR110	266977	broad.mit.edu	36	6	47092432	47092432	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	47092432	47092432	C	G	SNP	GPR110	NM_153840	human	genbank	54_36p	-1	validated	missense	c.643	p.V215L	0.53	"HMMPfam_SEA,superfamily_SEA domain"	"HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,superfamily_SEA domain"	-	no_errors
GPR115	221393	broad.mit.edu	36	6	47788128	47788128	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	47788128	47788128	A	G	SNP	GPR115	NM_153838	human	genbank	54_36p	1	validated	missense	c.377	p.E126G	0.07	NULL	HMMPfam_7tm_2	-	no_errors
GPR115	221393	broad.mit.edu	36	6	47790221	47790221	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	47790221	47790221	G	A	SNP	GPR115	NM_153838	human	genbank	54_36p	1	validated	nonsense	c.1281	p.W427*	1	NULL	HMMPfam_7tm_2	-	no_errors
C6orf138	442213	broad.mit.edu	36	6	48084503	48084503	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	48084503	48084503	G	C	SNP	C6orf138	NM_001013732	human	genbank	54_36p	-1	validated	missense	c.682	p.L228V	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
MUT	4594	broad.mit.edu	36	6	49535127	49535127	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	49535127	49535127	A	G	SNP	MUT	NM_000255	human	genbank	54_36p	-1	reviewed	silent	c.12	p.A4	1	NULL	"superfamily_Cobalamin (vitamin B12)-dependent enzymes,HMMPfam_MM_CoA_mutase,PatternScan_METMALONYL_COA_MUTASE,superfamily_Cobalamin (vitamin B12)-binding domain,HMMPfam_B12-binding"	-	no_errors
CENPQ	55166	broad.mit.edu	36	6	49556675	49556675	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	49556675	49556675	T	G	SNP	CENPQ	NM_018132	human	genbank	54_36p	1	validated	missense	c.400	p.L134V	0.21	NULL	NULL	-	no_errors
PGK2	5232	broad.mit.edu	36	6	49862556	49862556	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	49862556	49862556	C	A	SNP	PGK2	NM_138733	human	genbank	54_36p	-1	provisional	missense	c.304	p.A102S	0.04	"HMMPfam_PGK,superfamily_PGK"	"HMMPfam_PGK,superfamily_PGK,PatternScan_PGLYCERATE_KINASE"	-	no_errors
DEFB110	245913	broad.mit.edu	36	6	50097552	50097552	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	50097552	50097552	C	T	SNP	DEFB111	NM_001037497	human	genbank	54_36p	-1	provisional	splice_site	c.55+1	e1+1	0.99	-	-	-	no_errors
DEFB112	245915	broad.mit.edu	36	6	50119434	50119434	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	50119434	50119434	T	A	SNP	DEFB112	NM_001037498	human	genbank	54_36p	-1	provisional	missense	c.155	p.K52M	0	NULL	NULL	-	no_errors
TFAP2D	83741	broad.mit.edu	36	6	50804949	50804949	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	50804949	50804949	C	A	SNP	TFAP2D	NM_172238	human	genbank	54_36p	1	validated	missense	c.848	p.A283E	1	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
TFAP2D	83741	broad.mit.edu	36	6	50804977	50804977	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	50804977	50804977	G	C	SNP	TFAP2D	NM_172238	human	genbank	54_36p	1	validated	missense	c.876	p.L292F	1	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
TFAP2D	83741	broad.mit.edu	36	6	50826952	50826952	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	50826952	50826952	T	C	SNP	TFAP2D	NM_172238	human	genbank	54_36p	1	validated	silent	c.1095	p.T365	1	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
TFAP2D	83741	broad.mit.edu	36	6	50848343	50848343	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	50848343	50848343	C	T	SNP	TFAP2D	NM_172238	human	genbank	54_36p	1	validated	missense	c.1166	p.P389L	1	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
PKHD1	5314	broad.mit.edu	36	6	51631990	51631990	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	51631990	51631990	A	G	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	silent	c.10893	p.Y3631	0	NULL	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like"	-	no_errors
PKHD1	5314	broad.mit.edu	36	6	51809160	51809160	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	51809160	51809160	C	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	splice_site	c.8173+1	e50+1	1	-	-	-	no_errors
PKHD1	5314	broad.mit.edu	36	6	52049080	52049080	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	52049080	52049080	G	A	SNP	PKHD1	NM_138694	human	genbank	54_36p	-1	reviewed	missense	c.401	p.A134V	0.84	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Pectin lyase-like,superfamily_E set domains,HMMPfam_G8"	-	no_errors
EFHC1	114327	broad.mit.edu	36	6	52437805	52437805	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	52437805	52437805	A	C	SNP	EFHC1	NM_018100	human	genbank	54_36p	1	validated	missense	c.1070	p.E357A	1	HMMSmart_SM00676	"HMMSmart_SM00676,HMMPfam_DUF1126,superfamily_EF-hand,HMMPfam_efhand"	-	no_errors
GSTA2	2939	broad.mit.edu	36	6	52729051	52729051	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	52729051	52729051	T	A	SNP	GSTA2	NM_000846	human	genbank	54_36p	-1	reviewed	missense	c.103	p.I35L	0.01	"superfamily_Thiordxn-like_fd,HMMPfam_GST_N"	"superfamily_Thiordxn-like_fd,HMMPfam_GST_N,superfamily_GST_C_like,HMMPfam_GST_C"	-	no_errors
GSTA5	221357	broad.mit.edu	36	6	52804631	52804631	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	52804631	52804631	C	T	SNP	GSTA5	NM_153699	human	genbank	54_36p	-1	provisional	missense	c.643	p.E215K	0	superfamily_GST_C_like	"superfamily_Thiordxn-like_fd,HMMPfam_GST_N,superfamily_GST_C_like,HMMPfam_GST_C"	-	no_errors
GCM1	8521	broad.mit.edu	36	6	53104763	53104763	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	53104763	53104763	C	A	SNP	GCM1	NM_003643	human	genbank	54_36p	-1	reviewed	splice_site	c.441+1	e3+1	1	-	-	-	no_errors
GCLC	2729	broad.mit.edu	36	6	53481376	53481376	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	53481376	53481376	T	C	SNP	GCLC	NM_001498	human	genbank	54_36p	-1	reviewed	silent	c.921	p.R307	1	"superfamily_Glutamine synthetase/guanido kinase,HMMPfam_GCS"	"superfamily_Glutamine synthetase/guanido kinase,HMMPfam_GCS"	-	no_errors
KLHL31	401265	broad.mit.edu	36	6	53626958	53626958	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	53626958	53626958	G	A	SNP	KLHL31	NM_001003760	human	genbank	54_36p	-1	validated	nonsense	c.1072	p.Q358*	1	"superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_2,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
C6orf142	90523	broad.mit.edu	36	6	54097349	54097349	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	54097349	54097349	A	C	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	silent	c.339	p.A113	0.01	NULL	NULL	-	no_errors
C6orf142	90523	broad.mit.edu	36	6	54097511	54097511	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	54097511	54097511	G	A	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	silent	c.501	p.S167	0.03	NULL	NULL	-	no_errors
C6orf142	90523	broad.mit.edu	36	6	54203558	54203558	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	54203558	54203558	C	G	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	missense	c.1201	p.Q401E	1	NULL	NULL	-	no_errors
C6orf142	90523	broad.mit.edu	36	6	54203611	54203611	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	54203611	54203611	C	T	SNP	C6orf142	NM_138569	human	genbank	54_36p	1	validated	silent	c.1254	p.S418	0.98	NULL	NULL	-	no_errors
TINAG	27283	broad.mit.edu	36	6	54281422	54281422	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	54281422	54281422	C	G	SNP	TINAG	NM_014464	human	genbank	54_36p	1	validated	missense	c.115	p.H39D	0.19	NULL	"HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN"	-	no_errors
TINAG	27283	broad.mit.edu	36	6	54320270	54320270	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	54320270	54320270	C	T	SNP	TINAG	NM_014464	human	genbank	54_36p	1	validated	missense	c.895	p.R299C	1	"HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases"	"PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_SM00645,HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases"	-	no_errors
TINAG	27283	broad.mit.edu	36	6	54322624	54322624	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	54322624	54322624	T	G	SNP	TINAG	NM_014464	human	genbank	54_36p	1	validated	missense	c.1051	p.C351G	1	"HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases"	"PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_SM00645,HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases"	-	no_errors
FAM83B	222584	broad.mit.edu	36	6	54912525	54912525	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	54912525	54912525	T	C	SNP	FAM83B	NM_001010872	human	genbank	54_36p	1	validated	missense	c.797	p.V266A	1	"HMMPfam_DUF1669,superfamily_SSF56024"	"HMMPfam_DUF1669,superfamily_SSF56024"	-	no_errors
FAM83B	222584	broad.mit.edu	36	6	54912958	54912958	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	54912958	54912958	T	C	SNP	FAM83B	NM_001010872	human	genbank	54_36p	1	validated	silent	c.1230	p.N410	0.04	NULL	"HMMPfam_DUF1669,superfamily_SSF56024"	-	no_errors
FAM83B	222584	broad.mit.edu	36	6	54914197	54914197	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	54914197	54914197	A	G	SNP	FAM83B	NM_001010872	human	genbank	54_36p	1	validated	silent	c.2469	p.K823	0.32	NULL	"HMMPfam_DUF1669,superfamily_SSF56024"	-	no_errors
FAM83B	222584	broad.mit.edu	36	6	54914497	54914497	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	54914497	54914497	T	G	SNP	FAM83B	NM_001010872	human	genbank	54_36p	1	validated	silent	c.2769	p.L923	0	NULL	"HMMPfam_DUF1669,superfamily_SSF56024"	-	no_errors
GFRAL	389400	broad.mit.edu	36	6	55324010	55324010	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	55324010	55324010	G	T	SNP	GFRAL	NM_207410	human	genbank	54_36p	1	validated	missense	c.371	p.G124V	0.76	NULL	"superfamily_SSF110035,HMMPfam_GDNF"	-	no_errors
BMP5	653	broad.mit.edu	36	6	55767132	55767132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	55767132	55767132	C	T	SNP	BMP5	NM_021073	human	genbank	54_36p	-1	reviewed	missense	c.736	p.G246S	1	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
DST	667	broad.mit.edu	36	6	56483971	56483971	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	56483971	56483971	T	C	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.11872	p.I3958V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	broad.mit.edu	36	6	56505186	56505186	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	56505186	56505186	C	G	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.10132	p.E3378Q	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	broad.mit.edu	36	6	56579920	56579920	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	56579920	56579920	G	T	SNP	DST	NM_020388	human	genbank	54_36p	-1	reviewed	missense	c.5854	p.Q1952K	0.91	NULL	"HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_Spectrin,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin,PatternScan_RIBOSOMAL_L23"	-	no_errors
DST	667	broad.mit.edu	36	6	56604714	56604714	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	56604714	56604714	G	T	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.3256	p.L1086M	0.14	superfamily_Spectrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	broad.mit.edu	36	6	56605718	56605718	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	56605718	56605718	T	C	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.3065	p.D1022G	1	superfamily_Spectrin repeat	###############################################################################################################################################################################################################################################################	-	no_errors
DST	667	broad.mit.edu	36	6	56643499	56643499	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	56643499	56643499	C	A	SNP	DST	NM_183380	human	genbank	54_36p	-1	reviewed	missense	c.480	p.W160C	1	"HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain"	###############################################################################################################################################################################################################################################################	-	no_errors
BEND6	221336	broad.mit.edu	36	6	56965185	56965186	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	56965185	56965186	GG	TT	DNP	BEND6	NM_152731	human	genbank	54_36p	1	validated	missense	c.171_172	p.ED57DY	0.942:0.995	NULL	HMMPfam_BEN	-	no_errors
KHDRBS2	202559	broad.mit.edu	36	6	62448834	62448834	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	62448834	62448834	C	A	SNP	KHDRBS2	NM_152688	human	genbank	54_36p	-1	validated	missense	c.1043	p.R348I	1	NULL	"HMMSmart_KH,superfamily_SSF54791,HMMPfam_KH_1"	-	no_errors
KHDRBS2	202559	broad.mit.edu	36	6	62662622	62662622	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	62662622	62662622	G	C	SNP	KHDRBS2	NM_152688	human	genbank	54_36p	-1	validated	silent	c.687	p.T229	0.99	NULL	"HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791"	-	no_errors
PHF3	23469	broad.mit.edu	36	6	64474071	64474071	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	64474071	64474071	A	T	SNP	PHF3	NM_015153	human	genbank	54_36p	1	provisional	silent	c.3561	p.P1187	0.9	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC"	-	no_errors
EYS	346007	broad.mit.edu	36	6	66171839	66171839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	66171839	66171839	C	G	SNP	EYS	NM_198283	human	genbank	54_36p	-1	reviewed	missense	c.1005	p.E335D	0.02	"HMMSmart_SM00181,superfamily_EGF/Laminin"	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179"	-	no_errors
BAI3	577	broad.mit.edu	36	6	69405712	69405712	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	69405712	69405712	C	A	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.424	p.Q142K	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BAI3	577	broad.mit.edu	36	6	69780703	69780703	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	69780703	69780703	G	T	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.1982	p.W661L	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
BAI3	577	broad.mit.edu	36	6	70127958	70127958	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	70127958	70127958	C	A	SNP	BAI3	NM_001704	human	genbank	54_36p	1	reviewed	missense	c.4072	p.Q1358K	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
LMBRD1	55788	broad.mit.edu	36	6	70556916	70556916	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	70556916	70556916	G	A	SNP	LMBRD1	NM_018368	human	genbank	54_36p	-1	provisional	missense	c.239	p.T80I	1	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
COL9A1	1297	broad.mit.edu	36	6	71027088	71027088	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	71027088	71027088	C	A	SNP	COL9A1	NM_001851	human	genbank	54_36p	-1	reviewed	missense	c.1442	p.G481V	1	HMMPfam_Collagen	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen"	-	no_errors
COL9A1	1297	broad.mit.edu	36	6	71040482	71040482	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	71040482	71040482	G	A	SNP	COL9A1	NM_001851	human	genbank	54_36p	-1	reviewed	missense	c.1054	p.R352C	1	HMMPfam_Collagen	"HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl"	-	no_errors
B3GAT2	135152	broad.mit.edu	36	6	71628310	71628310	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	71628310	71628310	G	C	SNP	B3GAT2	NM_080742	human	genbank	54_36p	-1	reviewed	missense	c.829	p.L277V	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_43"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_43"	-	no_errors
RIMS1	22999	broad.mit.edu	36	6	72948915	72948915	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	72948915	72948915	G	T	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	silent	c.1020	p.A340	0	NULL	"superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
RIMS1	22999	broad.mit.edu	36	6	73040792	73040792	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	73040792	73040792	C	T	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	silent	c.3418	p.L1140	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
RIMS1	22999	broad.mit.edu	36	6	73100052	73100052	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	73100052	73100052	C	T	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	missense	c.4159	p.R1387W	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
RIMS1	22999	broad.mit.edu	36	6	73165447	73165447	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	73165447	73165447	G	A	SNP	RIMS1	NM_014989	human	genbank	54_36p	1	validated	missense	c.4790	p.R1597Q	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
KCNQ5	56479	broad.mit.edu	36	6	73843871	73843871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	73843871	73843871	G	A	SNP	KCNQ5	NM_019842	human	genbank	54_36p	1	reviewed	missense	c.722	p.R241H	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
DDX43	55510	broad.mit.edu	36	6	74161589	74161589	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	74161589	74161589	C	T	SNP	DDX43	NM_018665	human	genbank	54_36p	1	reviewed	silent	c.240	p.G80	0.16	"superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1"	"superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
DDX43	55510	broad.mit.edu	36	6	74181944	74181944	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	74181944	74181944	G	C	SNP	DDX43	NM_018665	human	genbank	54_36p	1	reviewed	missense	c.1749	p.R583S	0	superfamily_SSF52540	"PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_KH,HMMPfam_DEAD,HMMSmart_DEXDc,HMMPfam_KH_1,superfamily_SSF52540,superfamily_SSF54791"	-	no_errors
MTO1	25821	broad.mit.edu	36	6	74248501	74248501	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	74248501	74248501	C	A	SNP	MTO1	NM_133645	human	genbank	54_36p	1	reviewed	silent	c.1353	p.I451	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_GIDA,PatternScan_GIDA_2"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_GIDA,PatternScan_GIDA_1,PatternScan_GIDA_2"	-	no_errors
CD109	135228	broad.mit.edu	36	6	74574677	74574677	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	74574677	74574677	A	C	SNP	CD109	NM_133493	human	genbank	54_36p	1	validated	silent	c.3340	p.R1114	1	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp"	"HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep"	-	no_errors
COL12A1	1303	broad.mit.edu	36	6	75890707	75890707	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	75890707	75890707	T	C	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	silent	c.6708	p.K2236	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen"	-	no_errors
COL12A1	1303	broad.mit.edu	36	6	75894742	75894742	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	75894742	75894742	A	G	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	silent	c.6330	p.N2110	1	superfamily_Fibronectin type III	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL12A1	1303	broad.mit.edu	36	6	75958775	75958775	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	75958775	75958775	T	C	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	silent	c.207	p.E69	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
MYO6	4646	broad.mit.edu	36	6	76681429	76681429	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	76681429	76681429	C	G	SNP	MYO6	NM_004999	human	genbank	54_36p	1	reviewed	missense	c.3838	p.L1280V	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ"	-	no_errors
IMPG1	3617	broad.mit.edu	36	6	76717379	76717379	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	76717379	76717379	G	A	SNP	IMPG1	NM_001563	human	genbank	54_36p	-1	provisional	missense	c.1444	p.P482S	0.29	NULL	"superfamily_SSF82671,HMMPfam_SEA,HMMSmart_SEA"	-	no_errors
IMPG1	3617	broad.mit.edu	36	6	76785218	76785218	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	76785218	76785218	C	T	SNP	IMPG1	NM_001563	human	genbank	54_36p	-1	provisional	silent	c.744	p.K248	0.02	"HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671"	"HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671"	-	no_errors
ELOVL4	6785	broad.mit.edu	36	6	80688095	80688095	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	80688095	80688095	C	A	SNP	ELOVL4	NM_022726	human	genbank	54_36p	-1	reviewed	missense	c.507	p.W169C	1	HMMPfam_ELO	"HMMPfam_ELO,PatternScan_ELO"	-	no_errors
TTK	7272	broad.mit.edu	36	6	80801839	80801839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	80801839	80801839	C	G	SNP	TTK	NM_003318	human	genbank	54_36p	1	provisional	missense	c.1910	p.T637R	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
IBTK	25998	broad.mit.edu	36	6	82980899	82980899	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	82980899	82980899	G	A	SNP	IBTK	NM_015525	human	genbank	54_36p	-1	reviewed	silent	c.1968	p.N656	0.14	HMMSmart_SM00225	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_RCC1/BLIP-II,HMMPfam_RCC1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
IBTK	25998	broad.mit.edu	36	6	82981010	82981010	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	82981010	82981010	C	A	SNP	IBTK	NM_015525	human	genbank	54_36p	-1	reviewed	silent	c.1857	p.V619	0.91	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	"HMMSmart_SM00225,HMMPfam_RCC1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_RCC1/BLIP-II,superfamily_POZ domain,HMMPfam_BTB"	-	no_errors
TPBG	7162	broad.mit.edu	36	6	83131742	83131742	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	83131742	83131742	G	C	SNP	TPBG	NM_006670	human	genbank	54_36p	1	provisional	silent	c.345	p.P115	0.98	superfamily_L domain-like	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT"	-	no_errors
TPBG	7162	broad.mit.edu	36	6	83131803	83131803	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	83131803	83131803	G	T	SNP	TPBG	NM_006670	human	genbank	54_36p	1	provisional	missense	c.406	p.G136C	0.04	"HMMSmart_SM00369,superfamily_L domain-like"	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	-	no_errors
UBE2CBP	90025	broad.mit.edu	36	6	83723832	83723832	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	83723832	83723832	G	A	SNP	UBE2CBP	NM_198920	human	genbank	54_36p	-1	provisional	missense	c.1067	p.A356V	0.53	HMMPfam_DUF2351	HMMPfam_DUF2351	-	no_errors
DOPEY1	23033	broad.mit.edu	36	6	83902315	83902315	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	83902315	83902315	T	C	SNP	DOPEY1	NM_015018	human	genbank	54_36p	1	validated	silent	c.3129	p.N1043	0.99	NULL	HMMPfam_Dopey_N	-	no_errors
DOPEY1	23033	broad.mit.edu	36	6	83904483	83904483	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	83904483	83904483	T	C	SNP	DOPEY1	NM_015018	human	genbank	54_36p	1	validated	missense	c.4003	p.Y1335H	1	NULL	HMMPfam_Dopey_N	-	no_errors
DOPEY1	23033	broad.mit.edu	36	6	83920651	83920651	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	83920651	83920651	T	A	SNP	DOPEY1	NM_015018	human	genbank	54_36p	1	validated	missense	c.6423	p.H2141Q	1	NULL	HMMPfam_Dopey_N	-	no_errors
DOPEY1	23033	broad.mit.edu	36	6	83934367	83934367	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	83934367	83934367	T	G	SNP	DOPEY1	NM_015018	human	genbank	54_36p	1	validated	missense	c.7160	p.I2387S	0.98	NULL	HMMPfam_Dopey_N	-	no_errors
PRSS35	167681	broad.mit.edu	36	6	84290040	84290040	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	84290040	84290040	C	T	SNP	PRSS35	NM_153362	human	genbank	54_36p	1	provisional	missense	c.161	p.A54V	0	NULL	"PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS"	-	no_errors
TBX18	9096	broad.mit.edu	36	6	85503762	85503762	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	85503762	85503762	C	A	SNP	TBX18	NM_001080508	human	genbank	54_36p	-1	provisional	missense	c.1184	p.C395F	1	NULL	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TBX18	9096	broad.mit.edu	36	6	85529070	85529070	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	85529070	85529070	C	T	SNP	TBX18	NM_001080508	human	genbank	54_36p	-1	provisional	silent	c.408	p.P136	0.08	NULL	"HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1"	-	no_errors
SYNCRIP	10492	broad.mit.edu	36	6	86381659	86381659	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	86381659	86381659	T	C	SNP	SYNCRIP	NM_006372	human	genbank	54_36p	-1	provisional	missense	c.1406	p.Y469C	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
HTR1E	3354	broad.mit.edu	36	6	87781917	87781917	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	87781917	87781917	C	A	SNP	HTR1E	NM_000865	human	genbank	54_36p	1	validated	missense	c.146	p.T49N	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HTR1E	3354	broad.mit.edu	36	6	87782042	87782042	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	87782042	87782042	G	C	SNP	HTR1E	NM_000865	human	genbank	54_36p	1	validated	missense	c.271	p.G91R	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
CGA	1081	broad.mit.edu	36	6	87852257	87852257	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	87852257	87852257	C	G	SNP	CGA	NM_000735	human	genbank	54_36p	-1	reviewed	missense	c.287	p.G96A	0.01	"HMMPfam_Hormone_6,superfamily_Cystine-knot cytokines,HMMSmart_SM00067"	"HMMPfam_Hormone_6,superfamily_Cystine-knot cytokines,HMMSmart_SM00067,PatternScan_GLYCO_HORMONE_ALPHA_1,PatternScan_GLYCO_HORMONE_ALPHA_2"	-	no_errors
ZNF292	23036	broad.mit.edu	36	6	88021737	88021737	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	88021737	88021737	A	G	SNP	ZNF292	NM_015021	human	genbank	54_36p	1	validated	silent	c.1671	p.V557	1	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF292	23036	broad.mit.edu	36	6	88023857	88023857	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	88023857	88023857	C	T	SNP	ZNF292	NM_015021	human	genbank	54_36p	1	validated	missense	c.3791	p.P1264L	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
RARS2	57038	broad.mit.edu	36	6	88315054	88315054	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	88315054	88315054	A	C	SNP	RARS2	NM_020320	human	genbank	54_36p	-1	reviewed	missense	c.425	p.V142G	1	"HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I"	###############################################################################################################################################################################################################################################################	-	no_errors
RRAGD	58528	broad.mit.edu	36	6	90134616	90134616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	90134616	90134616	G	A	SNP	RRAGD	NM_021244	human	genbank	54_36p	-1	validated	missense	c.1081	p.R361W	1	HMMPfam_Gtr1_RagA	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Gtr1_RagA"	-	no_errors
ANKRD6	22881	broad.mit.edu	36	6	90333529	90333529	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	90333529	90333529	A	T	SNP	ANKRD6	NM_014942	human	genbank	54_36p	1	validated	missense	c.115	p.T39S	1	superfamily_Ankyrin repeat	"HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank"	-	no_errors
ANKRD6	22881	broad.mit.edu	36	6	90380262	90380262	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	90380262	90380262	C	T	SNP	ANKRD6	NM_014942	human	genbank	54_36p	1	validated	missense	c.547	p.R183C	1	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD6	22881	broad.mit.edu	36	6	90383054	90383054	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	90383054	90383054	A	G	SNP	ANKRD6	NM_014942	human	genbank	54_36p	1	validated	missense	c.671	p.K224R	0.98	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
MDN1	23195	broad.mit.edu	36	6	90425058	90425058	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	90425058	90425058	G	A	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	nonsense	c.15013	p.Q5005*	0.95	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327"	-	no_errors
MDN1	23195	broad.mit.edu	36	6	90437477	90437477	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	90437477	90437477	A	T	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.13838	p.V4613D	1	NULL	"HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like"	-	no_errors
MDN1	23195	broad.mit.edu	36	6	90439774	90439774	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	90439774	90439774	A	G	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.13376	p.L4459P	0.94	NULL	"HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like"	-	no_errors
MDN1	23195	broad.mit.edu	36	6	90442620	90442620	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	90442620	90442620	C	G	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.12567	p.W4189C	1	NULL	"HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like"	-	no_errors
MDN1	23195	broad.mit.edu	36	6	90474973	90474973	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	90474973	90474973	C	G	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.7861	p.D2621H	0.34	NULL	"HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like"	-	no_errors
CASP8AP2	9994	broad.mit.edu	36	6	90632438	90632438	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	90632438	90632438	C	G	SNP	CASP8AP2	ENST00000237177	human	ensembl	54_36p	1	known	missense	c.2708	p.S903C	0.71	NULL	superfamily_Homeodomain-like	-	no_stop_codon
BACH2	60468	broad.mit.edu	36	6	90699106	90699106	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	90699106	90699106	C	T	SNP	BACH2	NM_021813	human	genbank	54_36p	-1	validated	silent	c.2268	p.A756	0.03	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	-	no_errors
BACH2	60468	broad.mit.edu	36	6	90716963	90716963	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	90716963	90716963	T	G	SNP	BACH2	NM_021813	human	genbank	54_36p	-1	validated	missense	c.1583	p.Y528S	1	NULL	"HMMSmart_BTB,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,superfamily_BTB/POZ_fold,HMMPfam_bZIP_1,HMMPfam_BTB"	-	no_errors
MAP3K7	6885	broad.mit.edu	36	6	91335017	91335017	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	91335017	91335017	T	C	SNP	MAP3K7	NM_145331	human	genbank	54_36p	-1	reviewed	missense	c.278	p.Y93C	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
EPHA7	2045	broad.mit.edu	36	6	94009931	94009931	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	94009931	94009931	G	C	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.2931	p.I977M	1	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA7	2045	broad.mit.edu	36	6	94031079	94031079	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	94031079	94031079	T	C	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.1696	p.T566A	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA7	2045	broad.mit.edu	36	6	94035998	94035998	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	94035998	94035998	A	T	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	silent	c.1551	p.A517	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA7	2045	broad.mit.edu	36	6	94038740	94038740	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	94038740	94038740	C	A	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.1446	p.E482D	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA7	2045	broad.mit.edu	36	6	94177155	94177155	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	94177155	94177155	C	A	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.617	p.W206L	1	PatternScan_RECEPTOR_TYR_KIN_V_1	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA7	2045	broad.mit.edu	36	6	94177450	94177450	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	94177450	94177450	C	T	SNP	EPHA7	NM_004440	human	genbank	54_36p	-1	reviewed	missense	c.322	p.D108N	1	"HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FUT9	10690	broad.mit.edu	36	6	96758385	96758385	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	96758385	96758385	A	C	SNP	FUT9	NM_006581	human	genbank	54_36p	1	validated	missense	c.633	p.K211N	1	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors
KIAA0776	23376	broad.mit.edu	36	6	97095212	97095212	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	97095212	97095212	T	C	SNP	KIAA0776	NM_015323	human	genbank	54_36p	1	validated	silent	c.1239	p.S413	0.71	NULL	HMMPfam_DUF2042	-	no_errors
FHL5	9457	broad.mit.edu	36	6	97158240	97158240	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	97158240	97158240	C	A	SNP	FHL5	NM_020482	human	genbank	54_36p	1	reviewed	nonsense	c.30	p.Y10*	1	superfamily_SSF57716	"superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
FHL5	9457	broad.mit.edu	36	6	97158346	97158346	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	97158346	97158346	A	C	SNP	FHL5	NM_020482	human	genbank	54_36p	1	reviewed	missense	c.136	p.K46Q	0.93	"HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716"	"HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716"	-	no_errors
GPR63	81491	broad.mit.edu	36	6	97353978	97353978	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	97353978	97353978	G	A	SNP	GPR63	NM_030784	human	genbank	54_36p	-1	validated	silent	c.351	p.N117	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
KLHL32	114792	broad.mit.edu	36	6	97668765	97668765	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	97668765	97668765	A	G	SNP	KLHL32	NM_052904	human	genbank	54_36p	1	validated	missense	c.1013	p.H338R	1	"superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
C6orf168	84553	broad.mit.edu	36	6	99903814	99903814	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	99903814	99903814	C	G	SNP	C6orf168	NM_032511	human	genbank	54_36p	-1	validated	silent	c.156	p.G52	1	NULL	"superfamily_Thioredoxin-like,HMMPfam_Tom37,superfamily_Glutathione S-transferase (GST) C-terminal domain"	-	no_errors
SFRS18	25957	broad.mit.edu	36	6	99962842	99962842	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	99962842	99962842	C	T	SNP	SFRS18	NM_015491	human	genbank	54_36p	-1	validated	missense	c.700	p.A234T	1	NULL	NULL	-	no_errors
USP45	85015	broad.mit.edu	36	6	100000796	100000796	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	100000796	100000796	C	A	SNP	USP45	NM_001080481	human	genbank	54_36p	-1	provisional	nonsense	c.1573	p.G525*	0	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
MCHR2	84539	broad.mit.edu	36	6	100475619	100475619	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	100475619	100475619	T	C	SNP	MCHR2	NM_001040179	human	genbank	54_36p	-1	validated	missense	c.941	p.Q314R	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ASCC3	10973	broad.mit.edu	36	6	101064638	101064638	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	101064638	101064638	T	C	SNP	ASCC3	NM_006828	human	genbank	54_36p	-1	validated	missense	c.6352	p.I2118V	1	"HMMSmart_SEC63,HMMPfam_Sec63"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_AAA,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMSmart_SEC63,HMMPfam_Sec63"	-	no_errors
ASCC3	10973	broad.mit.edu	36	6	101354981	101354981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	101354981	101354981	G	A	SNP	ASCC3	NM_006828	human	genbank	54_36p	-1	validated	missense	c.1043	p.A348V	1	NULL	"HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_AAA,HMMPfam_Sec63,HMMPfam_DEAD,HMMSmart_DEXDc,HMMSmart_SEC63,superfamily_SSF52540"	-	no_errors
GRIK2	2898	broad.mit.edu	36	6	102372964	102372964	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	102372964	102372964	C	G	SNP	GRIK2	NM_021956	human	genbank	54_36p	1	reviewed	silent	c.1230	p.G410	1	superfamily_Periplasmic binding protein-like I	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRIK2	2898	broad.mit.edu	36	6	102589990	102589990	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	102589990	102589990	G	A	SNP	GRIK2	NM_021956	human	genbank	54_36p	1	reviewed	missense	c.2167	p.E723K	1	"HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II"	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
GRIK2	2898	broad.mit.edu	36	6	102622979	102622979	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	102622979	102622979	A	C	SNP	GRIK2	NM_021956	human	genbank	54_36p	1	reviewed	missense	c.2627	p.K876T	1	NULL	"HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II"	-	no_errors
HACE1	57531	broad.mit.edu	36	6	105387659	105387659	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	105387659	105387659	G	A	SNP	HACE1	NM_020771	human	genbank	54_36p	-1	validated	missense	c.485	p.A162V	1	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
HACE1	57531	broad.mit.edu	36	6	105397853	105397853	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	105397853	105397853	T	C	SNP	HACE1	NM_020771	human	genbank	54_36p	-1	validated	missense	c.340	p.M114V	1	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
LIN28B	389421	broad.mit.edu	36	6	105633035	105633035	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	105633035	105633035	C	T	SNP	LIN28B	NM_001004317	human	genbank	54_36p	1	provisional	missense	c.437	p.P146L	1	superfamily_Retrovirus zinc finger-like domains	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,superfamily_Retrovirus zinc finger-like domains,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
POPDC3	64208	broad.mit.edu	36	6	105713131	105713131	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	105713131	105713131	C	T	SNP	POPDC3	NM_022361	human	genbank	54_36p	-1	reviewed	silent	c.783	p.R261	0.88	NULL	"HMMPfam_Popeye,superfamily_cAMP-binding domain-like"	-	no_errors
PRDM1	639	broad.mit.edu	36	6	106659812	106659812	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	106659812	106659812	C	T	SNP	PRDM1	NM_001198	human	genbank	54_36p	1	reviewed	missense	c.976	p.P326S	0.91	NULL	"HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain,PatternScan_AA_TRNA_LIGASE_I,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
AIM1	202	broad.mit.edu	36	6	107074569	107074569	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	107074569	107074569	A	C	SNP	AIM1	NM_001624	human	genbank	54_36p	1	validated	missense	c.1569	p.E523D	0.01	NULL	"superfamily_G_crystallin_SF,HMMSmart_XTALbg,HMMPfam_Crystall,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin"	-	no_errors
AIM1	202	broad.mit.edu	36	6	107074958	107074958	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	107074958	107074958	C	G	SNP	AIM1	NM_001624	human	genbank	54_36p	1	validated	missense	c.1958	p.P653R	0	NULL	"HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,superfamily_G_crystallin_SF"	-	no_errors
AIM1	202	broad.mit.edu	36	6	107099204	107099204	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	107099204	107099204	G	C	SNP	AIM1	NM_001624	human	genbank	54_36p	1	validated	missense	c.3881	p.R1294T	0.98	"HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF"	"HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,superfamily_G_crystallin_SF"	-	no_errors
BEND3	57673	broad.mit.edu	36	6	107497569	107497569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	107497569	107497569	C	T	SNP	BEND3	NM_001080450	human	genbank	54_36p	-1	provisional	missense	c.1519	p.D507N	1	NULL	HMMPfam_BEN	-	no_errors
BEND3	57673	broad.mit.edu	36	6	107526493	107526493	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	107526493	107526493	C	G	SNP	BEND3	NM_001080450	human	genbank	54_36p	-1	provisional	silent	c.195	p.L65	0.02	NULL	HMMPfam_BEN	-	no_errors
PDSS2	57107	broad.mit.edu	36	6	107702082	107702082	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	107702082	107702082	A	C	SNP	PDSS2	NM_020381	human	genbank	54_36p	-1	validated	silent	c.474	p.A158	1	superfamily_Terpenoid synthases	superfamily_Terpenoid synthases	-	no_errors
SCML4	256380	broad.mit.edu	36	6	108148650	108148650	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	108148650	108148650	G	A	SNP	SCML4	NM_198081	human	genbank	54_36p	-1	validated	missense	c.836	p.P279L	1	NULL	NULL	-	no_errors
SCML4	256380	broad.mit.edu	36	6	108172975	108172975	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	108172975	108172975	C	A	SNP	SCML4	NM_198081	human	genbank	54_36p	-1	validated	missense	c.466	p.V156F	1	NULL	NULL	-	no_errors
SCML4	256380	broad.mit.edu	36	6	108177686	108177686	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	108177686	108177686	G	T	SNP	SCML4	NM_198081	human	genbank	54_36p	-1	validated	missense	c.94	p.P32T	1	NULL	NULL	-	no_errors
FOXO3	2309	broad.mit.edu	36	6	109091890	109091890	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	109091890	109091890	G	T	SNP	FOXO3	NM_001455	human	genbank	54_36p	1	reviewed	missense	c.1161	p.M387I	1	NULL	"PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,superfamily_SSF46785,HMMSmart_FH,PatternScan_FORK_HEAD_2"	-	no_errors
FOXO3	2309	broad.mit.edu	36	6	109092241	109092242	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	109092241	109092242	-	C	INS	FOXO3	NM_001455	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1512_1513	p.S504fs	1.000:1.000	NULL	"PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,superfamily_SSF46785,HMMSmart_FH,PatternScan_FORK_HEAD_2"	-	no_errors
MICAL1	64780	broad.mit.edu	36	6	109875077	109875077	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	109875077	109875077	G	A	SNP	MICAL1	NM_022765	human	genbank	54_36p	-1	validated	silent	c.2119	p.L707	1	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
MICAL1	64780	broad.mit.edu	36	6	109875113	109875113	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	109875113	109875113	C	T	SNP	MICAL1	NM_022765	human	genbank	54_36p	-1	validated	missense	c.2083	p.D695N	0.06	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	"HMMPfam_CH,HMMSmart_SM00033,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
ZBTB24	9841	broad.mit.edu	36	6	109903334	109903334	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	109903334	109903334	C	A	SNP	ZBTB24	NM_014797	human	genbank	54_36p	-1	provisional	missense	c.1249	p.D417Y	1	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_AT_hook,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FIG4	9896	broad.mit.edu	36	6	110224724	110224724	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	110224724	110224724	G	T	SNP	FIG4	NM_014845	human	genbank	54_36p	1	reviewed	missense	c.2523	p.R841S	0.3	NULL	HMMPfam_Syja_N	-	no_errors
DDO	8528	broad.mit.edu	36	6	110821006	110821006	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	110821006	110821006	C	T	SNP	DDO	NM_003649	human	genbank	54_36p	-1	reviewed	missense	c.775	p.V259I	0.56	"superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain"	"superfamily_Nucleotide-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,PatternScan_DAO"	-	no_errors
DDO	8528	broad.mit.edu	36	6	110836235	110836235	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	110836235	110836235	T	C	SNP	DDO	NM_003649	human	genbank	54_36p	-1	reviewed	silent	c.360	p.V120	0.88	"HMMPfam_DAO,superfamily_Nucleotide-binding domain"	"HMMPfam_DAO,PatternScan_DAO,superfamily_Nucleotide-binding domain,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
CDK19	23097	broad.mit.edu	36	6	111098373	111098373	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	111098373	111098373	T	C	SNP	CDC2L6	NM_015076	human	genbank	54_36p	-1	reviewed	missense	c.269	p.D90G	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
KIAA1919	91749	broad.mit.edu	36	6	111691771	111691771	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	111691771	111691771	T	A	SNP	KIAA1919	NM_153369	human	genbank	54_36p	1	validated	missense	c.242	p.F81Y	0.98	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
KIAA1919	91749	broad.mit.edu	36	6	111694117	111694117	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	111694117	111694117	C	T	SNP	KIAA1919	NM_153369	human	genbank	54_36p	1	validated	missense	c.659	p.T220I	0.1	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
REV3L	5980	broad.mit.edu	36	6	111844259	111844259	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	111844259	111844259	G	C	SNP	REV3L	NM_002912	human	genbank	54_36p	-1	validated	missense	c.249	p.I83M	1	superfamily_Ribonuclease H-like	"superfamily_Ribonuclease H-like,HMMSmart_SM00486,HMMPfam_DNA_pol_B_exo,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B"	-	no_errors
TRAF3IP2	10758	broad.mit.edu	36	6	112008224	112008224	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	112008224	112008224	C	T	SNP	TRAF3IP2	NM_147200	human	genbank	54_36p	-1	reviewed	silent	c.918	p.Q306	0.32	NULL	HMMPfam_SEFIR	-	no_errors
TRAF3IP2	10758	broad.mit.edu	36	6	112019369	112019369	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	112019369	112019369	T	G	SNP	TRAF3IP2	NM_147200	human	genbank	54_36p	-1	reviewed	missense	c.641	p.D214A	1	NULL	HMMPfam_SEFIR	-	no_errors
TUBE1	51175	broad.mit.edu	36	6	112503940	112503940	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	112503940	112503940	C	T	SNP	TUBE1	NM_016262	human	genbank	54_36p	-1	reviewed	silent	c.705	p.K235	1	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin"	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
LAMA4	3910	broad.mit.edu	36	6	112613197	112613197	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	112613197	112613197	G	A	SNP	LAMA4	NM_001105206	human	genbank	54_36p	-1	reviewed	nonsense	c.1012	p.Q338*	1	HMMPfam_Laminin_I	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_LAM_1,PatternScan_EGF_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	-	no_errors
FRK	2444	broad.mit.edu	36	6	116431764	116431764	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	116431764	116431764	A	T	SNP	FRK	NM_002031	human	genbank	54_36p	-1	reviewed	missense	c.435	p.S145R	1	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
DSE	29940	broad.mit.edu	36	6	116863562	116863566	+	Frame_Shift_Del	DEL	CTTTC	-	CTTTC	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	CTTTC	CTTTC	-	-	CTTTC	CTTTC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	116863562	116863566	CTTTC	-	DEL	DSE	NM_001080976	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1238_1242	p.S416fs	1.000:0.977:1.000:1.000:1.000	NULL	NULL	"(deletion:cds_exon[116863443,116865201])"	no_errors
KPNA5	3841	broad.mit.edu	36	6	117117292	117117292	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	117117292	117117292	C	A	SNP	KPNA5	NM_002269	human	genbank	54_36p	1	reviewed	missense	c.121	p.Q41K	1	HMMPfam_IBB	"HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
GPRC6A	222545	broad.mit.edu	36	6	117234278	117234278	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	117234278	117234278	T	C	SNP	GPRC6A	NM_148963	human	genbank	54_36p	-1	validated	missense	c.1283	p.D428G	0.97	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3"	-	no_errors
GPRC6A	222545	broad.mit.edu	36	6	117237372	117237372	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	117237372	117237372	A	T	SNP	GPRC6A	NM_148963	human	genbank	54_36p	-1	validated	missense	c.296	p.I99N	1	"HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I"	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_Periplasmic binding protein-like I"	-	no_errors
RFX6	222546	broad.mit.edu	36	6	117305175	117305175	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	117305175	117305175	A	T	SNP	RFX6	NM_173560	human	genbank	54_36p	1	provisional	missense	c.44	p.Q15L	0.96	NULL	"HMMPfam_RFX_DNA_binding,superfamily_SSF46785"	-	no_errors
ROS1	6098	broad.mit.edu	36	6	117771957	117771957	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	117771957	117771957	T	C	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	missense	c.4483	p.N1495D	0	HMMSmart_FN3	"HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF63825,HMMSmart_LY,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
ROS1	6098	broad.mit.edu	36	6	117780972	117780972	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	117780972	117780972	T	C	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	missense	c.4195	p.I1399V	0.01	superfamily_SSF63825	"HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825"	-	no_errors
ROS1	6098	broad.mit.edu	36	6	117814749	117814749	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	117814749	117814749	C	A	SNP	ROS1	NM_002944	human	genbank	54_36p	-1	reviewed	silent	c.2121	p.V707	1	"HMMSmart_LY,superfamily_SSF63825"	"HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825"	-	no_errors
FAM184A	79632	broad.mit.edu	36	6	119343135	119343135	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	119343135	119343135	G	A	SNP	FAM184A	NM_024581	human	genbank	54_36p	-1	validated	missense	c.2168	p.T723M	1	NULL	NULL	-	no_errors
GJA1	2697	broad.mit.edu	36	6	121810772	121810772	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	121810772	121810772	C	A	SNP	GJA1	NM_000165	human	genbank	54_36p	1	reviewed	missense	c.1080	p.D360E	1	NULL	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin43"	-	no_errors
SERINC1	57515	broad.mit.edu	36	6	122819461	122819461	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	122819461	122819461	C	G	SNP	SERINC1	NM_020755	human	genbank	54_36p	-1	provisional	missense	c.235	p.V79L	1	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors
SMPDL3A	10924	broad.mit.edu	36	6	123159671	123159671	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	123159671	123159671	T	C	SNP	SMPDL3A	NM_006714	human	genbank	54_36p	1	validated	silent	c.330	p.D110	1	"HMMPfam_Metallophos,superfamily_SSF56300"	"HMMPfam_Metallophos,superfamily_SSF56300"	-	no_errors
CLVS2	134829	broad.mit.edu	36	6	123360735	123360735	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	123360735	123360735	C	T	SNP	RLBP1L2	NM_001010852	human	genbank	54_36p	1	provisional	silent	c.114	p.V38	1	"superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N"	"superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMPfam_CRAL_TRIO,superfamily_CRAL/TRIO domain,HMMSmart_SM00516,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
TRDN	10345	broad.mit.edu	36	6	123933775	123933775	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	123933775	123933775	T	A	SNP	TRDN	NM_006073	human	genbank	54_36p	-1	validated	missense	c.224	p.N75I	1	HMMPfam_Triadin	HMMPfam_Triadin	-	no_errors
NCOA7	135112	broad.mit.edu	36	6	126278190	126278190	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	126278190	126278190	A	C	SNP	NCOA7	NM_181782	human	genbank	54_36p	1	validated	silent	c.2115	p.T705	0.61	NULL	"superfamily_LysM domain,HMMSmart_SM00257,HMMPfam_LysM,HMMPfam_GRAM,HMMSmart_SM00584,HMMPfam_TLD"	-	no_errors
KIAA0408	9729	broad.mit.edu	36	6	127809856	127809856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	127809856	127809856	C	T	SNP	KIAA0408	NM_014702	human	genbank	54_36p	-1	validated	missense	c.1301	p.R434K	0.68	NULL	NULL	-	no_errors
C6orf174	387104	broad.mit.edu	36	6	127838890	127838890	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	127838890	127838890	C	G	SNP	C6orf174	NM_001012279	human	genbank	54_36p	-1	validated	silent	c.1974	p.L658	1	NULL	NULL	-	no_errors
C6orf174	387104	broad.mit.edu	36	6	127838893	127838893	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	127838893	127838893	C	T	SNP	C6orf174	NM_001012279	human	genbank	54_36p	-1	validated	silent	c.1971	p.E657	1	NULL	NULL	-	no_errors
C6orf174	387104	broad.mit.edu	36	6	127839177	127839178	+	Missense_Mutation	DNP	AG	AG	TA	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	127839177	127839178	AG	TA	DNP	C6orf174	NM_001012279	human	genbank	54_36p	-1	validated	missense	c.1687_1686	p.F563I	1.000:0.991	NULL	NULL	-	no_errors
THEMIS	387357	broad.mit.edu	36	6	128192473	128192473	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	128192473	128192473	G	C	SNP	C6orf190	NM_001010923	human	genbank	54_36p	-1	validated	missense	c.550	p.L184V	1	NULL	NULL	-	no_errors
PTPRK	5796	broad.mit.edu	36	6	128339861	128339861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	6	128339861	128339861	G	T	SNP	PTPRK	NM_002844	human	genbank	54_36p	-1	validated	missense	c.3743	p.T1248K	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA2	3908	broad.mit.edu	36	6	129246100	129246100	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	129246100	129246100	G	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.17	p.G6V	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA2	3908	broad.mit.edu	36	6	129683414	129683414	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	129683414	129683414	G	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.4097	p.R1366L	0	"HMMPfam_Laminin_B,superfamily_ConA_like_lec_gl"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA2	3908	broad.mit.edu	36	6	129854834	129854834	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	129854834	129854834	C	T	SNP	LAMA2	NM_000426	human	genbank	54_36p	1	reviewed	missense	c.7994	p.A2665V	0.27	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1"	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGAP18	93663	broad.mit.edu	36	6	129946930	129946930	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	129946930	129946930	C	G	SNP	ARHGAP18	NM_033515	human	genbank	54_36p	-1	validated	silent	c.1734	p.V578	1	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP18	93663	broad.mit.edu	36	6	130001292	130001292	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	T	T	-	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	130001292	130001292	T	-	DEL	ARHGAP18	NM_033515	human	genbank	54_36p	-1	validated	frame_shift_del	c.492	p.K164fs	1	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"(deletion:cds_exon[130001232,130001467])"	no_errors
L3MBTL3	84456	broad.mit.edu	36	6	130431218	130431218	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	130431218	130431218	G	T	SNP	L3MBTL3	NM_032438	human	genbank	54_36p	1	validated	missense	c.1051	p.A351S	1	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561"	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
L3MBTL3	84456	broad.mit.edu	36	6	130502489	130502518	+	In_Frame_Del	DEL	CATTGTTAAAATTATGAGCATTAAACTGGG	-	CATTGTTAAAATTATGAGCATTAAACTGGG	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	CATTGTTAAAATTATGAGCATTAAACTGGG	CATTGTTAAAATTATGAGCATTAAACTGGG	-	-	CATTGTTAAAATTATGAGCATTAAACTGGG	CATTGTTAAAATTATGAGCATTAAACTGGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	130502489	130502518	CATTGTTAAAATTATGAGCATTAAACTGGG	-	DEL	L3MBTL3	NM_032438	human	genbank	54_36p	1	validated	in_frame_del	c.2241_2270	p.IVKIMSIKLG748in_frame_del	1.000:1.000:1.000:0.997:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:0.992:1.000:1.000:1.000:1.000	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	"(deletion:cds_exon[130502448,130502591])"	no_errors
SAMD3	154075	broad.mit.edu	36	6	130517702	130517702	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	130517702	130517702	G	C	SNP	SAMD3	NM_001017373	human	genbank	54_36p	-1	validated	missense	c.984	p.D328E	0.96	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
SAMD3	154075	broad.mit.edu	36	6	130517856	130517856	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	130517856	130517856	G	A	SNP	SAMD3	NM_001017373	human	genbank	54_36p	-1	validated	missense	c.830	p.A277V	0	NULL	"HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain"	-	no_errors
TMEM200A	114801	broad.mit.edu	36	6	130804293	130804293	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	130804293	130804293	C	G	SNP	TMEM200A	NM_052913	human	genbank	54_36p	1	provisional	missense	c.1033	p.L345V	0.28	NULL	HMMPfam_DUF2371	-	no_errors
AKAP7	9465	broad.mit.edu	36	6	131532090	131532090	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	131532090	131532090	A	T	SNP	AKAP7	NM_016377	human	genbank	54_36p	1	reviewed	silent	c.507	p.S169	0.08	"HMMPfam_AKAP7_NLS,superfamily_LigT-like"	"HMMPfam_AKAP7_NLS,superfamily_LigT-like,HMMPfam_AKAP7_RIRII_bdg"	-	no_errors
ARG1	383	broad.mit.edu	36	6	131939508	131939508	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	131939508	131939508	G	T	SNP	ARG1	NM_000045	human	genbank	54_36p	1	reviewed	missense	c.70	p.V24L	1	"HMMPfam_Arginase,superfamily_Arginase/deacetylase"	"HMMPfam_Arginase,superfamily_Arginase/deacetylase,PatternScan_ARGINASE_1,PatternScan_ARGINASE_2,PatternScan_ARGINASE_3"	-	no_errors
MED23	9439	broad.mit.edu	36	6	131950541	131950541	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	131950541	131950541	C	T	SNP	MED23	NM_015979	human	genbank	54_36p	-1	reviewed	splice_site	c.4095+1	e30+1	1	-	-	-	no_errors
MED23	9439	broad.mit.edu	36	6	131958997	131958997	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	131958997	131958997	C	G	SNP	MED23	NM_004830	human	genbank	54_36p	-1	reviewed	splice_site	c.2779-1	e22-1	1	-	-	-	no_errors
OR2A4	79541	broad.mit.edu	36	6	132064162	132064162	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	132064162	132064162	G	A	SNP	OR2A4	NM_030908	human	genbank	54_36p	-1	provisional	missense	c.73	p.L25F	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
ENPP3	5169	broad.mit.edu	36	6	132089031	132089031	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	132089031	132089031	T	C	SNP	ENPP3	NM_005021	human	genbank	54_36p	1	reviewed	silent	c.1951	p.L651	0.01	"superfamily_SSF54060,HMMSmart_NUC"	"HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest,superfamily_SSF54060,HMMSmart_NUC"	-	no_errors
TAAR8	83551	broad.mit.edu	36	6	132915641	132915641	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	132915641	132915641	C	T	SNP	TAAR8	NM_053278	human	genbank	54_36p	1	provisional	silent	c.117	p.S39	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TAAR6	319100	broad.mit.edu	36	6	132933337	132933337	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	132933337	132933337	C	A	SNP	TAAR6	NM_175067	human	genbank	54_36p	1	provisional	missense	c.184	p.Q62K	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TAAR2	9287	broad.mit.edu	36	6	132980498	132980498	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	132980498	132980498	G	A	SNP	TAAR2	NM_001033080	human	genbank	54_36p	-1	validated	silent	c.540	p.F180	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
VNN1	8876	broad.mit.edu	36	6	133045988	133045988	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	133045988	133045988	C	G	SNP	VNN1	NM_004666	human	genbank	54_36p	-1	reviewed	missense	c.1526	p.C509S	0	NULL	"superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase"	-	no_errors
VNN1	8876	broad.mit.edu	36	6	133046083	133046083	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	133046083	133046083	C	T	SNP	VNN1	NM_004666	human	genbank	54_36p	-1	reviewed	silent	c.1431	p.G477	1	NULL	"HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse"	-	no_errors
VNN1	8876	broad.mit.edu	36	6	133046139	133046139	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	133046139	133046139	G	C	SNP	VNN1	NM_004666	human	genbank	54_36p	-1	reviewed	missense	c.1375	p.R459G	0.99	NULL	"HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse"	-	no_errors
TCF21	6943	broad.mit.edu	36	6	134252467	134252467	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	134252467	134252467	A	C	SNP	TCF21	NM_003206	human	genbank	54_36p	1	reviewed	missense	c.239	p.Q80P	1	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH"	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
SLC2A12	154091	broad.mit.edu	36	6	134391675	134391675	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	134391675	134391675	C	G	SNP	SLC2A12	NM_145176	human	genbank	54_36p	-1	validated	missense	c.981	p.K327N	1	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SGK1	6446	broad.mit.edu	36	6	134533197	134533197	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	134533197	134533197	T	C	SNP	SGK1	NM_005627	human	genbank	54_36p	-1	reviewed	missense	c.1198	p.K400E	1	"HMMSmart_SM00133,HMMPfam_Pkinase_C"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C"	-	no_errors
ALDH8A1	64577	broad.mit.edu	36	6	135281568	135281568	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	135281568	135281568	A	C	SNP	ALDH8A1	NM_022568	human	genbank	54_36p	-1	reviewed	missense	c.1142	p.I381S	1	"superfamily_ALDH-like,HMMPfam_Aldedh"	"superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
ALDH8A1	64577	broad.mit.edu	36	6	135295636	135295636	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	135295636	135295636	C	G	SNP	ALDH8A1	NM_022568	human	genbank	54_36p	-1	reviewed	missense	c.820	p.A274P	0.54	"HMMPfam_Aldedh,superfamily_ALDH-like"	"HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like"	-	no_errors
AHI1	54806	broad.mit.edu	36	6	135829182	135829182	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	135829182	135829182	A	G	SNP	AHI1	NM_017651	human	genbank	54_36p	-1	reviewed	missense	c.212	p.L71P	0.96	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
PDE7B	27115	broad.mit.edu	36	6	136517000	136517000	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	136517000	136517000	G	T	SNP	PDE7B	NM_018945	human	genbank	54_36p	1	validated	missense	c.573	p.E191D	1	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I"	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
IL20RA	53832	broad.mit.edu	36	6	137364605	137364605	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	137364605	137364605	C	T	SNP	IL20RA	NM_014432	human	genbank	54_36p	-1	reviewed	nonsense	c.1445	p.W482*	1	NULL	"HMMPfam_IL10Ra-bind,superfamily_Fibronectin type III"	-	no_errors
IL20RA	53832	broad.mit.edu	36	6	137364667	137364667	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	137364667	137364667	C	T	SNP	IL20RA	NM_014432	human	genbank	54_36p	-1	reviewed	silent	c.1383	p.A461	0	NULL	"superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind"	-	no_errors
OLIG3	167826	broad.mit.edu	36	6	137856904	137856904	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	137856904	137856904	G	T	SNP	OLIG3	NM_175747	human	genbank	54_36p	-1	provisional	missense	c.97	p.Q33K	1	NULL	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
TNFAIP3	7128	broad.mit.edu	36	6	138241536	138241536	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	138241536	138241536	C	G	SNP	TNFAIP3	NM_006290	human	genbank	54_36p	1	reviewed	missense	c.1261	p.L421V	0.17	NULL	"HMMPfam_OTU,HMMPfam_zf-A20,HMMSmart_ZnF_A20"	-	no_errors
TNFAIP3	7128	broad.mit.edu	36	6	138244103	138244103	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	138244103	138244103	A	G	SNP	TNFAIP3	NM_006290	human	genbank	54_36p	1	reviewed	missense	c.2327	p.N776S	0.94	"HMMPfam_zf-A20,HMMSmart_ZnF_A20"	"HMMPfam_zf-A20,HMMSmart_ZnF_A20,HMMPfam_OTU"	-	no_errors
KIAA1244	57221	broad.mit.edu	36	6	138572856	138572856	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	138572856	138572856	G	T	SNP	KIAA1244	NM_020340	human	genbank	54_36p	1	validated	missense	c.336	p.Q112H	1	NULL	"HMMSmart_Sec7,HMMPfam_DUF1981"	-	no_errors
KIAA1244	57221	broad.mit.edu	36	6	138697573	138697573	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	138697573	138697573	G	A	SNP	KIAA1244	NM_020340	human	genbank	54_36p	1	validated	missense	c.5897	p.R1966K	0.97	NULL	"HMMSmart_Sec7,HMMPfam_DUF1981"	-	no_errors
TXLNB	167838	broad.mit.edu	36	6	139605515	139605515	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	139605515	139605515	A	G	SNP	TXLNB	NM_153235	human	genbank	54_36p	-1	validated	silent	c.1896	p.A632	0	NULL	HMMPfam_Taxilin	-	no_errors
NMBR	4829	broad.mit.edu	36	6	142451184	142451184	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	142451184	142451184	G	A	SNP	NMBR	NM_002511	human	genbank	54_36p	-1	validated	missense	c.305	p.S102L	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HIVEP2	3097	broad.mit.edu	36	6	143135840	143135840	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	143135840	143135840	A	G	SNP	HIVEP2	NM_006734	human	genbank	54_36p	-1	provisional	missense	c.1729	p.F577L	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
HIVEP2	3097	broad.mit.edu	36	6	143137420	143137420	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	143137420	143137420	A	G	SNP	HIVEP2	NM_006734	human	genbank	54_36p	-1	provisional	missense	c.149	p.I50T	0.48	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
AIG1	51390	broad.mit.edu	36	6	143423879	143423879	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	143423879	143423879	C	G	SNP	AIG1	NM_016108	human	genbank	54_36p	1	validated	missense	c.124	p.L42V	1	HMMPfam_Far-17a_AIG1	HMMPfam_Far-17a_AIG1	-	no_errors
PHACTR2	9749	broad.mit.edu	36	6	144128261	144128261	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	144128261	144128261	C	T	SNP	PHACTR2	NM_001100164	human	genbank	54_36p	1	validated	missense	c.865	p.H289Y	0.04	NULL	"HMMPfam_RPEL,HMMSmart_SM00707"	-	no_errors
PHACTR2	9749	broad.mit.edu	36	6	144136913	144136913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	144136913	144136913	G	A	SNP	PHACTR2	NM_001100164	human	genbank	54_36p	1	validated	missense	c.1457	p.R486Q	0.99	NULL	"HMMPfam_RPEL,HMMSmart_SM00707"	-	no_errors
LTV1	84946	broad.mit.edu	36	6	144208937	144208937	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	144208937	144208937	C	T	SNP	LTV1	NM_032860	human	genbank	54_36p	1	provisional	silent	c.192	p.D64	1	HMMPfam_LTV	HMMPfam_LTV	-	no_errors
LTV1	84946	broad.mit.edu	36	6	144212980	144212980	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	144212980	144212980	C	A	SNP	LTV1	NM_032860	human	genbank	54_36p	1	provisional	missense	c.329	p.P110H	1	HMMPfam_LTV	HMMPfam_LTV	-	no_errors
STX11	8676	broad.mit.edu	36	6	144549920	144549920	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	144549920	144549920	G	A	SNP	STX11	NM_003764	human	genbank	54_36p	1	reviewed	missense	c.463	p.D155N	1	"HMMSmart_SynN,superfamily_t-snare"	"HMMPfam_Syntaxin,HMMSmart_SynN,superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
UTRN	7402	broad.mit.edu	36	6	144814287	144814287	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	144814287	144814287	A	G	SNP	UTRN	NM_007124	human	genbank	54_36p	1	reviewed	missense	c.2161	p.M721V	1	"HMMSmart_SPEC,superfamily_Spectrin"	###############################################################################################################################################################################################################################################################	-	no_errors
UTRN	7402	broad.mit.edu	36	6	144825491	144825491	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	144825491	144825491	T	G	SNP	UTRN	NM_007124	human	genbank	54_36p	1	reviewed	missense	c.2862	p.D954E	1	"HMMSmart_SPEC,superfamily_Spectrin"	###############################################################################################################################################################################################################################################################	-	no_errors
UTRN	7402	broad.mit.edu	36	6	145199306	145199306	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	145199306	145199306	T	C	SNP	UTRN	NM_007124	human	genbank	54_36p	1	reviewed	missense	c.10001	p.I3334T	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SHPRH	257218	broad.mit.edu	36	6	146297896	146297897	+	Missense_Mutation	DNP	CC	CC	AT	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	146297896	146297897	CC	AT	DNP	SHPRH	NM_001042683	human	genbank	54_36p	-1	validated	missense	c.2830_2829	p.D944Y	1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SHPRH	257218	broad.mit.edu	36	6	146297985	146297985	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	146297985	146297985	A	C	SNP	SHPRH	NM_001042683	human	genbank	54_36p	-1	validated	missense	c.2741	p.I914R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SHPRH	257218	broad.mit.edu	36	6	146306061	146306061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	146306061	146306061	C	T	SNP	SHPRH	NM_001042683	human	genbank	54_36p	-1	validated	missense	c.2149	p.A717T	1	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
GRM1	2911	broad.mit.edu	36	6	146392580	146392580	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	146392580	146392580	G	T	SNP	GRM1	NM_000838	human	genbank	54_36p	1	reviewed	missense	c.234	p.R78S	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg"	-	no_errors
GRM1	2911	broad.mit.edu	36	6	146393018	146393018	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	146393018	146393018	G	T	SNP	GRM1	NM_000838	human	genbank	54_36p	1	reviewed	missense	c.672	p.W224C	1	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg,superfamily_SSF53822"	-	no_errors
GRM1	2911	broad.mit.edu	36	6	146797326	146797326	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	146797326	146797326	G	A	SNP	GRM1	NM_000838	human	genbank	54_36p	1	reviewed	missense	c.3286	p.D1096N	0.99	NULL	"HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg,superfamily_SSF53822"	-	no_errors
UST	10090	broad.mit.edu	36	6	149327285	149327285	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	149327285	149327285	G	A	SNP	UST	NM_005715	human	genbank	54_36p	1	validated	missense	c.574	p.V192I	1	HMMPfam_HS2ST	HMMPfam_HS2ST	-	no_errors
LATS1	9113	broad.mit.edu	36	6	150024892	150024892	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	150024892	150024892	C	G	SNP	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	missense	c.3059	p.R1020T	1	superfamily_Protein kinase-like (PK-like)	"superfamily_UBA-like,HMMPfam_UBA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C"	-	no_errors
LATS1	9113	broad.mit.edu	36	6	150043055	150043055	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	6	150043055	150043055	C	T	SNP	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	missense	c.2242	p.A748T	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMPfam_UBA,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_UBA-like,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
LATS1	9113	broad.mit.edu	36	6	150043217	150043217	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	150043217	150043217	G	A	SNP	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	missense	c.2080	p.R694C	1	superfamily_Protein kinase-like (PK-like)	"HMMPfam_UBA,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_UBA-like,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
LATS1	9113	broad.mit.edu	36	6	150064723	150064723	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	150064723	150064723	A	-	DEL	LATS1	NM_004690	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.233	p.L78fs	1	NULL	"superfamily_UBA-like,HMMPfam_UBA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase_C"	"(deletion:cds_exon[150064608,150064955])"	no_errors
RAET1L	154064	broad.mit.edu	36	6	150384998	150384998	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	150384998	150384998	C	T	SNP	RAET1L	NM_130900	human	genbank	54_36p	-1	validated	missense	c.160	p.G54S	0.06	superfamily_MHC_I/II-like_Ag-recog	"PatternScan_IG_MHC,superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_I"	-	no_errors
IYD	389434	broad.mit.edu	36	6	150732019	150732019	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	150732019	150732019	C	A	SNP	IYD	NM_203395	human	genbank	54_36p	1	validated	missense	c.159	p.D53E	0.03	NULL	"superfamily_FMN-dependent nitroreductase-like,HMMPfam_Nitroreductase"	-	no_errors
PLEKHG1	57480	broad.mit.edu	36	6	151096881	151096881	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	151096881	151096881	C	A	SNP	PLEKHG1	NM_001029884	human	genbank	54_36p	1	provisional	missense	c.371	p.T124N	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PLEKHG1	57480	broad.mit.edu	36	6	151194350	151194350	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	151194350	151194350	C	A	SNP	PLEKHG1	NM_001029884	human	genbank	54_36p	1	provisional	missense	c.2410	p.P804T	0	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
AKAP12	9590	broad.mit.edu	36	6	151714981	151714981	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	151714981	151714981	T	G	SNP	AKAP12	NM_005100	human	genbank	54_36p	1	reviewed	silent	c.3762	p.T1254	0	NULL	"HMMPfam_WSK,HMMPfam_RII_binding_1"	-	no_errors
SYNE1	23345	broad.mit.edu	36	6	152596620	152596620	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	152596620	152596620	T	C	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.20701	p.K6901E	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SYNE1	23345	broad.mit.edu	36	6	152599766	152599766	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	152599766	152599766	T	C	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.20078	p.H6693R	0.87	superfamily_Spectrin repeat	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SYNE1	23345	broad.mit.edu	36	6	152632074	152632074	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	152632074	152632074	G	T	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.18614	p.T6205K	0	HMMSmart_SM00150	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SYNE1	23345	broad.mit.edu	36	6	152693389	152693389	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	152693389	152693389	C	A	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.14124	p.E4708D	0.99	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SYNE1	23345	broad.mit.edu	36	6	152699818	152699819	+	Missense_Mutation	DNP	TC	TC	AT	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	152699818	152699819	TC	AT	DNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.12379_12378	p.N4127Y	1.000:1.000	superfamily_Spectrin repeat	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SYNE1	23345	broad.mit.edu	36	6	152818386	152818386	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	152818386	152818386	C	G	SNP	SYNE1	NM_182961	human	genbank	54_36p	-1	reviewed	missense	c.2760	p.K920N	0.99	superfamily_Spectrin repeat	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
OPRM1	4988	broad.mit.edu	36	6	154452831	154452831	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	154452831	154452831	C	T	SNP	OPRM1	NM_001008505	human	genbank	54_36p	1	validated	silent	c.468	p.S156	1	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
IPCEF1	26034	broad.mit.edu	36	6	154628743	154628743	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	154628743	154628743	C	T	SNP	IPCEF1	NM_015553	human	genbank	54_36p	-1	validated	missense	c.31	p.A11T	0	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
TIAM2	26230	broad.mit.edu	36	6	155492131	155492131	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	155492131	155492131	T	G	SNP	TIAM2	NM_012454	human	genbank	54_36p	1	reviewed	missense	c.82	p.C28G	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1"	-	no_errors
TIAM2	26230	broad.mit.edu	36	6	155492947	155492947	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	155492947	155492947	C	T	SNP	TIAM2	NM_012454	human	genbank	54_36p	1	reviewed	missense	c.898	p.R300W	0.98	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PH domain-like"	-	no_errors
TIAM2	26230	broad.mit.edu	36	6	155500014	155500014	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	155500014	155500014	C	A	SNP	TIAM2	NM_012454	human	genbank	54_36p	1	reviewed	silent	c.1206	p.S402	1	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PH domain-like"	-	no_errors
TIAM2	26230	broad.mit.edu	36	6	155608487	155608487	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	155608487	155608487	C	T	SNP	TIAM2	NM_012454	human	genbank	54_36p	1	reviewed	silent	c.3582	p.Y1194	0.98	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00455,superfamily_PH domain-like"	-	no_errors
TULP4	56995	broad.mit.edu	36	6	158830742	158830742	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	158830742	158830742	A	G	SNP	TULP4	NM_020245	human	genbank	54_36p	1	validated	missense	c.1621	p.K541E	1	superfamily_Transcriptional factor tubby C-terminal domain	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TNF-like,HMMPfam_SOCS_box,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub"	-	no_errors
TMEM181	57583	broad.mit.edu	36	6	158914445	158914445	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	158914445	158914445	C	T	SNP	TMEM181	NM_020823	human	genbank	54_36p	1	validated	missense	c.425	p.A142V	1	NULL	NULL	-	no_errors
SYTL3	94120	broad.mit.edu	36	6	159006487	159006487	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	159006487	159006487	G	C	SNP	SYTL3	NM_001009991	human	genbank	54_36p	1	validated	missense	c.183	p.K61N	1	superfamily_FYVE/PHD zinc finger	"superfamily_FYVE/PHD zinc finger,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
RSPH3	83861	broad.mit.edu	36	6	159321911	159321911	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	159321911	159321911	C	T	SNP	RSPH3	NM_031924	human	genbank	54_36p	-1	validated	missense	c.1168	p.E390K	1	HMMPfam_Radial_spoke_3	HMMPfam_Radial_spoke_3	-	no_errors
RSPH3	83861	broad.mit.edu	36	6	159340871	159340871	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	159340871	159340871	G	C	SNP	RSPH3	NM_031924	human	genbank	54_36p	-1	validated	silent	c.126	p.P42	0	NULL	HMMPfam_Radial_spoke_3	-	no_errors
TAGAP	117289	broad.mit.edu	36	6	159379141	159379141	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	159379141	159379141	G	T	SNP	TAGAP	NM_054114	human	genbank	54_36p	-1	reviewed	missense	c.891	p.D297E	1	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
FNDC1	84624	broad.mit.edu	36	6	159574023	159574023	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	159574023	159574023	G	T	SNP	FNDC1	NM_032532	human	genbank	54_36p	1	validated	missense	c.2489	p.R830M	0.02	NULL	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
PNLDC1	154197	broad.mit.edu	36	6	160160303	160160303	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	160160303	160160303	G	C	SNP	PNLDC1	NM_173516	human	genbank	54_36p	1	provisional	silent	c.1428	p.R476	0.04	NULL	"superfamily_Ribonuclease H-like,HMMPfam_CAF1"	-	no_errors
MAS1	4142	broad.mit.edu	36	6	160248035	160248035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	160248035	160248035	G	T	SNP	MAS1	NM_002377	human	genbank	54_36p	1	reviewed	missense	c.58	p.G20C	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
IGF2R	3482	broad.mit.edu	36	6	160430178	160430178	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	160430178	160430178	G	A	SNP	IGF2R	NM_000876	human	genbank	54_36p	1	reviewed	missense	c.6370	p.A2124T	1	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR"	"superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1"	-	no_errors
LPA	4018	broad.mit.edu	36	6	160897179	160897179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	160897179	160897179	C	T	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	missense	c.4841	p.R1614Q	0.78	"superfamily_Kringle-like,HMMSmart_SM00130"	"superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
LPA	4018	broad.mit.edu	36	6	160935006	160935006	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	160935006	160935006	C	T	SNP	LPA	NM_005577	human	genbank	54_36p	-1	validated	silent	c.3603	p.Q1201	0.02	"HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like"	"HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
AGPAT4	56895	broad.mit.edu	36	6	161507297	161507297	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	161507297	161507297	G	C	SNP	AGPAT4	NM_020133	human	genbank	54_36p	-1	reviewed	missense	c.321	p.S107R	1	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	"HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC"	-	no_errors
QKI	9444	broad.mit.edu	36	6	163904617	163904617	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	163904617	163904617	A	T	SNP	QKI	NM_006775	human	genbank	54_36p	1	validated	silent	c.810	p.P270	0.91	NULL	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
PDE10A	10846	broad.mit.edu	36	6	165726274	165726274	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	165726274	165726274	A	C	SNP	PDE10A	NM_006661	human	genbank	54_36p	-1	validated	missense	c.1477	p.F493V	1	superfamily_HD-domain/PDEase-like	"superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDE10A	10846	broad.mit.edu	36	6	165747019	165747019	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	165747019	165747019	A	C	SNP	PDE10A	NM_006661	human	genbank	54_36p	-1	validated	missense	c.1208	p.M403R	1	"HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like"	"HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_SM00065,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like"	-	no_errors
PDE10A	10846	broad.mit.edu	36	6	165763777	165763777	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	6	165763777	165763777	A	T	SNP	PDE10A	NM_006661	human	genbank	54_36p	-1	validated	missense	c.761	p.L254H	1	superfamily_GAF domain-like	"HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_SM00065,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like"	-	no_errors
T	6862	broad.mit.edu	36	6	166491851	166491851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	166491851	166491851	G	A	SNP	T	NM_003181	human	genbank	54_36p	-1	reviewed	missense	c.1250	p.A417V	0.99	NULL	"HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TTLL2	83887	broad.mit.edu	36	6	167674346	167674346	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	167674346	167674346	C	T	SNP	TTLL2	NM_031949	human	genbank	54_36p	1	validated	missense	c.968	p.T323M	1	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
KIF25	3834	broad.mit.edu	36	6	168173123	168173123	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	168173123	168173123	G	T	SNP	KIF25	NM_030615	human	genbank	54_36p	1	reviewed	missense	c.9	p.W3C	0	HMMPfam_Kinesin	"HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
THBS2	7058	broad.mit.edu	36	6	169390480	169390480	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	169390480	169390480	C	G	SNP	THBS2	NM_003247	human	genbank	54_36p	-1	reviewed	missense	c.566	p.R189P	1	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl"	###############################################################################################################################################################################################################################################################	-	no_errors
THBS2	7058	broad.mit.edu	36	6	169390614	169390614	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	6	169390614	169390614	C	T	SNP	THBS2	NM_003247	human	genbank	54_36p	-1	reviewed	silent	c.432	p.L144	1	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl"	###############################################################################################################################################################################################################################################################	-	no_errors
THBS2	7058	broad.mit.edu	36	6	169390750	169390750	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	6	169390750	169390750	G	A	SNP	THBS2	NM_003247	human	genbank	54_36p	-1	reviewed	missense	c.296	p.T99M	1	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl"	###############################################################################################################################################################################################################################################################	-	no_errors
THBS2	7058	broad.mit.edu	36	6	169392752	169392752	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	169392752	169392752	C	T	SNP	THBS2	NM_003247	human	genbank	54_36p	-1	reviewed	splice_site	c.52+1	e1+1	0.89	-	-	-	no_errors
WDR27	253769	broad.mit.edu	36	6	169801541	169801541	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	169801541	169801541	T	G	SNP	WDR27	NM_182552	human	genbank	54_36p	-1	validated	splice_site	c.1130-2	e10-2	0.15	-	-	-	no_errors
C6orf70	55780	broad.mit.edu	36	6	169910191	169910191	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	169910191	169910191	T	C	SNP	C6orf70	NM_018341	human	genbank	54_36p	1	validated	missense	c.1058	p.M353T	0.99	NULL	NULL	-	no_errors
PSMB1	5689	broad.mit.edu	36	6	170688290	170688290	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	6	170688290	170688290	C	G	SNP	PSMB1	NM_002793	human	genbank	54_36p	-1	reviewed	missense	c.497	p.G166A	1	"superfamily_SSF56235,HMMPfam_Proteasome"	"superfamily_SSF56235,HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
HEATR2	54919	broad.mit.edu	36	7	776749	776749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	776749	776749	G	A	SNP	HEATR2	NM_017802	human	genbank	54_36p	1	validated	silent	c.1899	p.L633	0.99	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
HEATR2	54919	broad.mit.edu	36	7	791754	791754	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	791754	791754	C	A	SNP	HEATR2	NM_017802	human	genbank	54_36p	1	validated	missense	c.2506	p.R836S	0.99	NULL	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
GPER	2852	broad.mit.edu	36	7	1098327	1098327	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	1098327	1098327	T	A	SNP	GPER	NM_001039966	human	genbank	54_36p	1	reviewed	missense	c.437	p.F146Y	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MICALL2	79778	broad.mit.edu	36	7	1442910	1442910	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	1442910	1442910	C	G	SNP	MICALL2	NM_182924	human	genbank	54_36p	-1	validated	missense	c.2585	p.R862P	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
MICALL2	79778	broad.mit.edu	36	7	1454828	1454828	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	1454828	1454828	C	G	SNP	MICALL2	NM_182924	human	genbank	54_36p	-1	validated	missense	c.288	p.L96F	0.98	"HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain"	"HMMPfam_CH,HMMSmart_SM00033,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Calponin-homology domain CH-domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
INTS1	26173	broad.mit.edu	36	7	1491584	1491586	+	In_Frame_Del	DEL	CTC	-	CTC	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	7	1491584	1491586	CTC	-	DEL	INTS1	NM_001080453	human	genbank	54_36p	-1	validated	in_frame_del	c.3471_3469	p.E1157in_frame_del	0.999:1.000:1.000	NULL	PatternScan_ACTININ_1	"(deletion:cds_exon[1491452,1491688])"	no_errors
MAD1L1	8379	broad.mit.edu	36	7	2222320	2222320	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	2222320	2222320	C	A	SNP	MAD1L1	NM_001013836	human	genbank	54_36p	-1	reviewed	silent	c.807	p.L269	0.99	HMMPfam_MAD	HMMPfam_MAD	-	no_errors
EIF3B	8662	broad.mit.edu	36	7	2375837	2375837	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	2375837	2375837	C	T	SNP	EIF3B	NM_001037283	human	genbank	54_36p	1	validated	silent	c.1608	p.G536	0.85	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_eIF2A"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_eIF2A"	-	no_errors
LFNG	3955	broad.mit.edu	36	7	2533042	2533043	+	Missense_Mutation	DNP	AC	AC	CA	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	2533042	2533043	AC	CA	DNP	LFNG	NM_001040167	human	genbank	54_36p	1	reviewed	missense	c.1034_1035	p.H345P	0.976:0.948	HMMPfam_Fringe	HMMPfam_Fringe	-	no_errors
IQCE	23288	broad.mit.edu	36	7	2596247	2596247	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	2596247	2596247	G	A	SNP	IQCE	NM_152558	human	genbank	54_36p	1	validated	missense	c.1225	p.E409K	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
CARD11	84433	broad.mit.edu	36	7	2921464	2921464	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	2921464	2921464	C	T	SNP	CARD11	NM_032415	human	genbank	54_36p	-1	validated	silent	c.2772	p.G924	0.66	NULL	"PatternScan_GUANYLATE_KINASE_1,superfamily_DEATH_like,HMMPfam_CARD,superfamily_PDZ,HMMSmart_PDZ,superfamily_SSF52540"	-	no_errors
CARD11	84433	broad.mit.edu	36	7	2928911	2928911	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	2928911	2928911	A	C	SNP	CARD11	NM_032415	human	genbank	54_36p	-1	validated	missense	c.2152	p.C718G	1	"HMMSmart_PDZ,superfamily_PDZ"	"HMMPfam_CARD,HMMSmart_PDZ,superfamily_PDZ,superfamily_DEATH_like,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540"	-	no_errors
CARD11	84433	broad.mit.edu	36	7	2934793	2934793	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	2934793	2934793	G	A	SNP	CARD11	NM_032415	human	genbank	54_36p	-1	validated	silent	c.1719	p.I573	0.94	NULL	"HMMPfam_CARD,HMMSmart_PDZ,superfamily_PDZ,superfamily_DEATH_like,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540"	-	no_errors
SDK1	221935	broad.mit.edu	36	7	3958009	3958009	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	3958009	3958009	G	T	SNP	SDK1	NM_152744	human	genbank	54_36p	1	validated	missense	c.1081	p.V361F	0.97	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
SDK1	221935	broad.mit.edu	36	7	4017140	4017140	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	4017140	4017140	G	T	SNP	SDK1	NM_152744	human	genbank	54_36p	1	validated	silent	c.2148	p.V716	0.26	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
SDK1	221935	broad.mit.edu	36	7	4055543	4055543	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	4055543	4055543	C	T	SNP	SDK1	NM_152744	human	genbank	54_36p	1	validated	silent	c.2640	p.A880	0.68	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
SDK1	221935	broad.mit.edu	36	7	4083181	4083181	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	4083181	4083181	C	T	SNP	SDK1	NM_152744	human	genbank	54_36p	1	validated	silent	c.3036	p.Y1012	0.2	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FOXK1	221937	broad.mit.edu	36	7	4767323	4767323	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	4767323	4767323	C	G	SNP	FOXK1	NM_001037165	human	genbank	54_36p	1	validated	missense	c.1799	p.T600R	0.99	NULL	"superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
KIAA0415	9907	broad.mit.edu	36	7	4789544	4789544	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	4789544	4789544	G	C	SNP	KIAA0415	NM_014855	human	genbank	54_36p	1	validated	missense	c.438	p.E146D	1	NULL	NULL	-	no_errors
PAPOLB	56903	broad.mit.edu	36	7	4867818	4867818	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	4867818	4867818	G	A	SNP	PAPOLB	NM_020144	human	genbank	54_36p	-1	validated	silent	c.150	p.F50	0.95	"HMMPfam_PAP_central,superfamily_SSF81301"	"HMMPfam_PAP_central,superfamily_SSF81301,HMMPfam_NTP_transf_2,superfamily_SSF81631,superfamily_PAP_C,HMMPfam_PAP_RNA-bind"	-	no_errors
RBAK	57786	broad.mit.edu	36	7	5063848	5063848	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	5063848	5063848	T	G	SNP	RBAK	NM_021163	human	genbank	54_36p	1	reviewed	missense	c.150	p.D50E	0	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RBAK	57786	broad.mit.edu	36	7	5069883	5069883	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	5069883	5069883	A	G	SNP	RBAK	NM_021163	human	genbank	54_36p	1	reviewed	silent	c.270	p.R90	0.1	NULL	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
RBAK	57786	broad.mit.edu	36	7	5071171	5071172	+	Missense_Mutation	DNP	TT	TT	AA	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	5071171	5071172	TT	AA	DNP	RBAK	NM_021163	human	genbank	54_36p	1	reviewed	missense	c.1558_1559	p.F520N	0.470:0.177	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
WIPI2	26100	broad.mit.edu	36	7	5205797	5205797	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	5205797	5205797	G	C	SNP	WIPI2	NM_015610	human	genbank	54_36p	1	validated	missense	c.193	p.E65Q	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	-	no_errors
WIPI2	26100	broad.mit.edu	36	7	5224105	5224105	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	5224105	5224105	C	T	SNP	WIPI2	NM_015610	human	genbank	54_36p	1	validated	silent	c.603	p.H201	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like"	"HMMSmart_SM00320,superfamily_WD40 repeat-like"	-	no_errors
TNRC18B	27320	broad.mit.edu	36	7	5318829	5318830	+	Missense_Mutation	DNP	TT	TT	CA	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	5318829	5318830	TT	CA	DNP	TNRC18B	ENST00000399537	human	ensembl	54_36p	-1	known	missense	c.7862_7861	p.K2621W	0.193:0.194	NULL	"HMMPfam_BAH,HMMSmart_SM00439"	-	no_errors
TNRC18	84629	broad.mit.edu	36	7	5368104	5368104	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	5368104	5368104	G	C	SNP	TNRC18	NM_001080495	human	genbank	54_36p	-1	provisional	nonsense	c.4260	p.Y1420*	1	NULL	"HMMPfam_BAH,HMMSmart_SM00439"	-	no_errors
TNRC18	84629	broad.mit.edu	36	7	5376660	5376660	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	5376660	5376660	C	G	SNP	TNRC18	NM_001080495	human	genbank	54_36p	-1	provisional	missense	c.3869	p.G1290A	0.57	NULL	"HMMPfam_BAH,HMMSmart_SM00439"	-	no_errors
TNRC18	84629	broad.mit.edu	36	7	5383118	5383118	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	5383118	5383118	C	T	SNP	TNRC18	NM_001080495	human	genbank	54_36p	-1	provisional	missense	c.2272	p.A758T	1	NULL	"HMMPfam_BAH,HMMSmart_SM00439"	-	no_errors
FBXL18	80028	broad.mit.edu	36	7	5506682	5506682	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	5506682	5506682	C	G	SNP	FBXL18	NM_024963	human	genbank	54_36p	-1	validated	missense	c.1744	p.D582H	1	superfamily_SSF52047	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047"	-	no_errors
FBXL18	80028	broad.mit.edu	36	7	5506814	5506814	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	5506814	5506814	G	A	SNP	FBXL18	NM_024963	human	genbank	54_36p	-1	validated	missense	c.1612	p.L538F	0.99	superfamily_SSF52047	"HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047,superfamily_SSF81383"	-	no_errors
FBXL18	80028	broad.mit.edu	36	7	5507229	5507229	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	5507229	5507229	C	T	SNP	FBXL18	NM_024963	human	genbank	54_36p	-1	validated	silent	c.1197	p.E399	0.76	superfamily_SSF52047	"HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047,superfamily_SSF81383"	-	no_errors
FSCN1	6624	broad.mit.edu	36	7	5610090	5610090	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	5610090	5610090	C	T	SNP	FSCN1	NM_003088	human	genbank	54_36p	1	validated	silent	c.1182	p.F394	1	"superfamily_Actin_crosslink,HMMPfam_Fascin"	"superfamily_Actin_crosslink,HMMPfam_Fascin"	-	no_errors
RNF216	54476	broad.mit.edu	36	7	5629094	5629094	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	5629094	5629094	C	T	SNP	RNF216	NM_207111	human	genbank	54_36p	-1	reviewed	missense	c.2695	p.D899N	0.98	NULL	"HMMSmart_IBR,superfamily_SSF57850"	-	no_errors
RNF216	54476	broad.mit.edu	36	7	5727257	5727257	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	5727257	5727257	C	T	SNP	RNF216	NM_207111	human	genbank	54_36p	-1	reviewed	missense	c.1577	p.R526H	0.26	NULL	"HMMSmart_IBR,superfamily_SSF57850"	-	no_errors
RSPH10B	222967	broad.mit.edu	36	7	5949590	5949590	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	5949590	5949590	A	C	SNP	RSPH10B	NM_173565	human	genbank	54_36p	-1	validated	missense	c.1649	p.M550R	0.48	NULL	"HMMPfam_MORN,superfamily_SSF82185,HMMSmart_MORN"	-	no_errors
AIMP2	7965	broad.mit.edu	36	7	6024012	6024012	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	6024012	6024012	G	T	SNP	JTV1	NM_006303	human	genbank	54_36p	1	validated	silent	c.384	p.P128	0.14	NULL	superfamily_GST_C_like	-	no_errors
USP42	84132	broad.mit.edu	36	7	6156165	6156165	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	6156165	6156165	G	A	SNP	USP42	ENST00000404835	human	ensembl	54_36p	1	known	silent	c.1812	p.L604	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC"	-	no_errors
C7orf70	84792	broad.mit.edu	36	7	6336862	6336862	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	6336862	6336862	G	T	SNP	MGC12966	NM_001037163	human	genbank	54_36p	-1	validated	missense	c.449	p.P150H	0	NULL	NULL	-	no_errors
DAGLB	221955	broad.mit.edu	36	7	6416284	6416284	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	6416284	6416284	A	G	SNP	DAGLB	NM_139179	human	genbank	54_36p	-1	validated	splice_site	c.1820+2	e14+2	1	-	-	-	no_errors
DAGLB	221955	broad.mit.edu	36	7	6422836	6422836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	6422836	6422836	G	A	SNP	DAGLB	NM_139179	human	genbank	54_36p	-1	validated	silent	c.1374	p.A458	0	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase_3"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase_3"	-	no_errors
DAGLB	221955	broad.mit.edu	36	7	6442674	6442674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	6442674	6442674	G	A	SNP	DAGLB	NM_139179	human	genbank	54_36p	-1	validated	missense	c.263	p.P88L	1	NULL	"HMMPfam_Lipase_3,superfamily_alpha/beta-Hydrolases"	-	no_errors
RSPH10B2	728194	broad.mit.edu	36	7	6764015	6764015	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	6764015	6764015	G	A	SNP	RSPH10B2	NM_001099697	human	genbank	54_36p	1	provisional	missense	c.182	p.R61H	0	NULL	"HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698"	-	no_errors
NXPH1	30010	broad.mit.edu	36	7	8757457	8757457	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	8757457	8757457	A	G	SNP	NXPH1	NM_152745	human	genbank	54_36p	1	reviewed	missense	c.349	p.K117E	1	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors
THSD7A	221981	broad.mit.edu	36	7	11385794	11385794	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	11385794	11385794	C	G	SNP	THSD7A	NM_015204	human	genbank	54_36p	-1	validated	silent	c.4578	p.S1526	0.8	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
THSD7A	221981	broad.mit.edu	36	7	11642734	11642734	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	11642734	11642734	A	C	SNP	THSD7A	NM_015204	human	genbank	54_36p	-1	validated	silent	c.570	p.P190	0.93	superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	-	no_errors
ARL4A	10124	broad.mit.edu	36	7	12694730	12694730	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	12694730	12694730	A	T	SNP	ARL4A	NM_001037164	human	genbank	54_36p	1	reviewed	missense	c.326	p.E109V	1	"HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175"	"HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,PatternScan_ARF"	-	no_errors
ETV1	2115	broad.mit.edu	36	7	13937754	13937754	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	13937754	13937754	G	A	SNP	ETV1	ENST00000405358	human	ensembl	54_36p	-1	known	missense	c.742	p.P248S	1	HMMPfam_ETS_PEA3_N	"HMMPfam_ETS_PEA3_N,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
DGKB	1607	broad.mit.edu	36	7	14613624	14613624	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	14613624	14613624	G	C	SNP	DGKB	NM_004080	human	genbank	54_36p	-1	reviewed	missense	c.1396	p.R466G	1	"HMMPfam_DAGK_cat,HMMSmart_SM00046"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
DGKB	1607	broad.mit.edu	36	7	14613634	14613634	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	14613634	14613634	T	C	SNP	DGKB	NM_004080	human	genbank	54_36p	-1	reviewed	silent	c.1386	p.L462	0.38	"HMMPfam_DAGK_cat,HMMSmart_SM00046"	"HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain"	-	no_errors
MEOX2	4223	broad.mit.edu	36	7	15692124	15692124	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	15692124	15692124	C	A	SNP	MEOX2	NM_005924	human	genbank	54_36p	-1	reviewed	silent	c.429	p.A143	0.99	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ISPD	729920	broad.mit.edu	36	7	16412440	16412440	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	16412440	16412440	A	C	SNP	LOC729920	NM_001101426	human	genbank	54_36p	-1	validated	missense	c.305	p.M102R	1	"superfamily_SSF53448,HMMPfam_IspD"	"superfamily_SSF53448,HMMPfam_IspD,PatternScan_ISPD"	-	no_errors
SOSTDC1	25928	broad.mit.edu	36	7	16471749	16471749	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	16471749	16471749	A	G	SNP	SOSTDC1	NM_015464	human	genbank	54_36p	-1	reviewed	missense	c.70	p.F24L	1	HMMPfam_Sclerostin	HMMPfam_Sclerostin	-	no_errors
TSPAN13	27075	broad.mit.edu	36	7	16784011	16784011	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	16784011	16784011	C	G	SNP	TSPAN13	NM_014399	human	genbank	54_36p	1	reviewed	missense	c.376	p.L126V	1	HMMPfam_Tetraspannin	HMMPfam_Tetraspannin	-	no_errors
AHR	196	broad.mit.edu	36	7	17346021	17346021	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	17346021	17346021	C	G	SNP	AHR	NM_001621	human	genbank	54_36p	1	reviewed	missense	c.2047	p.Q683E	0.16	NULL	"HMMSmart_SM00353,HMMPfam_HLH,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086"	-	no_errors
HDAC9	9734	broad.mit.edu	36	7	18635511	18635511	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	18635511	18635511	C	T	SNP	HDAC9	NM_178425	human	genbank	54_36p	1	reviewed	silent	c.678	p.N226	1	NULL	"superfamily_SSF52768,HMMPfam_Hist_deacetyl"	-	no_errors
MACC1	346389	broad.mit.edu	36	7	20164423	20164423	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	20164423	20164423	C	T	SNP	MACC1	NM_182762	human	genbank	54_36p	-1	validated	missense	c.2086	p.V696I	1	superfamily_DEATH domain	"HMMPfam_SH3_2,superfamily_DEATH domain"	-	no_errors
ABCB5	340273	broad.mit.edu	36	7	20651927	20651927	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	20651927	20651927	G	T	SNP	ABCB5	ENST00000404938	human	ensembl	54_36p	1	known	missense	c.702	p.K234N	1	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCB5	340273	broad.mit.edu	36	7	20733216	20733216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	20733216	20733216	G	A	SNP	ABCB5	NM_178559	human	genbank	54_36p	1	validated	missense	c.1319	p.R440H	1	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	-	no_errors
SP4	6671	broad.mit.edu	36	7	21436472	21436472	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	21436472	21436472	T	A	SNP	SP4	NM_003112	human	genbank	54_36p	1	validated	missense	c.1164	p.D388E	0.97	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
SP4	6671	broad.mit.edu	36	7	21436551	21436551	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	21436551	21436551	C	G	SNP	SP4	NM_003112	human	genbank	54_36p	1	validated	missense	c.1243	p.Q415E	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
SP4	6671	broad.mit.edu	36	7	21488152	21488152	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	21488152	21488152	C	T	SNP	SP4	NM_003112	human	genbank	54_36p	1	validated	nonsense	c.1993	p.R665*	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
DNAH11	8701	broad.mit.edu	36	7	21607028	21607028	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	21607028	21607028	A	G	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	silent	c.3210	p.E1070	0.84	NULL	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy"	-	no_errors
DNAH11	8701	broad.mit.edu	36	7	21693297	21693297	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	21693297	21693297	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.5698	p.G1900C	1	"HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH11	8701	broad.mit.edu	36	7	21713907	21713907	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	21713907	21713907	C	A	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.6633	p.N2211K	1	"HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH11	8701	broad.mit.edu	36	7	21754771	21754771	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	21754771	21754771	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.8580	p.L2860F	0.88	"HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH11	8701	broad.mit.edu	36	7	21795470	21795470	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	21795470	21795470	C	T	SNP	DNAH11	NM_003777	human	genbank	54_36p	1	reviewed	nonsense	c.10033	p.Q3345*	0.99	NULL	"HMMPfam_DHC_N1,HMMPfam_DHC_N2"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DNAH11	8701	broad.mit.edu	36	7	21848769	21848769	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	21848769	21848769	T	C	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.10795	p.Y3599H	1	NULL	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH11	8701	broad.mit.edu	36	7	21879437	21879437	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	21879437	21879437	G	C	SNP	DNAH11	ENST00000328843	human	ensembl	54_36p	1	known	missense	c.12009	p.K4003N	1	HMMPfam_Dynein_heavy	"PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
RAPGEF5	9771	broad.mit.edu	36	7	22151226	22151226	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	22151226	22151226	C	T	SNP	RAPGEF5	NM_012294	human	genbank	54_36p	-1	validated	missense	c.1688	p.R563Q	1	"superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF"	"superfamily_Winged helix DNA-binding domain,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF"	-	no_errors
KLHL7	55975	broad.mit.edu	36	7	23180351	23180351	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	23180351	23180351	C	G	SNP	KLHL7	NM_001031710	human	genbank	54_36p	1	validated	missense	c.1670	p.A557G	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
GPNMB	10457	broad.mit.edu	36	7	23263167	23263167	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	23263167	23263167	G	A	SNP	GPNMB	NM_001005340	human	genbank	54_36p	1	reviewed	missense	c.499	p.G167R	0.97	NULL	"superfamily_PKD domain,HMMSmart_SM00089,HMMPfam_PKD"	-	no_errors
GPNMB	10457	broad.mit.edu	36	7	23280357	23280357	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	23280357	23280357	G	C	SNP	GPNMB	NM_001005340	human	genbank	54_36p	1	reviewed	missense	c.1708	p.G570R	0	NULL	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain"	-	no_errors
CCDC126	90693	broad.mit.edu	36	7	23649244	23649244	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	23649244	23649244	G	A	SNP	CCDC126	NM_138771	human	genbank	54_36p	1	validated	silent	c.408	p.S136	0.68	NULL	NULL	-	no_errors
CYCS	54205	broad.mit.edu	36	7	25129902	25129902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	25129902	25129902	C	T	SNP	CYCS	NM_018947	human	genbank	54_36p	-1	reviewed	silent	c.261	p.K87	1	"superfamily_Cytochrome c,HMMPfam_Cytochrom_C"	"superfamily_Cytochrome c,HMMPfam_Cytochrom_C"	-	no_errors
SKAP2	8935	broad.mit.edu	36	7	26676276	26676276	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	26676276	26676276	T	C	SNP	SKAP2	NM_003930	human	genbank	54_36p	-1	reviewed	missense	c.1048	p.K350E	1	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1"	-	no_errors
HOXA1	3198	broad.mit.edu	36	7	27101502	27101502	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	27101502	27101502	G	T	SNP	HOXA1	NM_005522	human	genbank	54_36p	-1	reviewed	silent	c.555	p.A185	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXA1	3198	broad.mit.edu	36	7	27101659	27101659	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	27101659	27101659	C	T	SNP	HOXA1	NM_005522	human	genbank	54_36p	-1	reviewed	missense	c.398	p.G133E	1	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
HOXA1	3198	broad.mit.edu	36	7	27101805	27101805	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	27101805	27101805	C	A	SNP	HOXA1	NM_005522	human	genbank	54_36p	-1	reviewed	silent	c.252	p.G84	0.61	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
HOXA10	3206	broad.mit.edu	36	7	27179982	27179982	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	27179982	27179982	A	G	SNP	HOXA10	NM_018951	human	genbank	54_36p	-1	reviewed	missense	c.418	p.C140R	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXA10	3206	broad.mit.edu	36	7	27180331	27180331	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	27180331	27180331	G	A	SNP	HOXA10	NM_018951	human	genbank	54_36p	-1	reviewed	silent	c.69	p.G23	1	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
HOXA11	3207	broad.mit.edu	36	7	27190868	27190868	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	27190868	27190868	C	G	SNP	HOXA11	NM_005523	human	genbank	54_36p	-1	reviewed	missense	c.421	p.D141H	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
TRIL	9865	broad.mit.edu	36	7	28963656	28963656	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	28963656	28963656	A	G	SNP	KIAA0644	NM_014817	human	genbank	54_36p	-1	validated	silent	c.532	p.L178	0.66	"superfamily_L domain-like,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT"	-	pseudogene
CPVL	54504	broad.mit.edu	36	7	29036851	29036851	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	29036851	29036851	G	C	SNP	CPVL	NM_019029	human	genbank	54_36p	-1	reviewed	missense	c.1187	p.T396R	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER"	-	no_errors
CHN2	1124	broad.mit.edu	36	7	29513396	29513396	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	29513396	29513396	A	T	SNP	CHN2	NM_004067	human	genbank	54_36p	1	reviewed	missense	c.1019	p.N340I	0.99	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
WIPF3	644150	broad.mit.edu	36	7	29882023	29882023	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	29882023	29882023	C	T	SNP	WIPF3	NM_001080529	human	genbank	54_36p	1	provisional	missense	c.143	p.A48V	0.99	"HMMPfam_WH2,HMMSmart_WH2"	"HMMPfam_WH2,HMMSmart_WH2"	-	no_errors
SCRN1	9805	broad.mit.edu	36	7	29946841	29946841	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	29946841	29946841	T	A	SNP	SCRN1	NM_014766	human	genbank	54_36p	-1	reviewed	missense	c.721	p.S241C	1	NULL	NULL	-	no_errors
NOD1	10392	broad.mit.edu	36	7	30457825	30457825	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	30457825	30457825	A	G	SNP	NOD1	NM_006092	human	genbank	54_36p	-1	validated	missense	c.1733	p.L578P	1	NULL	"superfamily_DEATH_like,HMMPfam_CARD,HMMPfam_NACHT,superfamily_SSF52047"	-	no_errors
GARS	2617	broad.mit.edu	36	7	30622130	30622130	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	30622130	30622130	G	T	SNP	GARS	NM_002047	human	genbank	54_36p	1	reviewed	missense	c.1125	p.L375F	1	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b"	"HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon"	-	no_errors
CRHR2	1395	broad.mit.edu	36	7	30661826	30661826	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	30661826	30661826	C	T	SNP	CRHR2	NM_001883	human	genbank	54_36p	-1	validated	silent	c.948	p.L316	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2"	"superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
INMT	11185	broad.mit.edu	36	7	30761858	30761858	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	30761858	30761858	G	T	SNP	INMT	NM_006774	human	genbank	54_36p	1	reviewed	nonsense	c.658	p.E220*	0.1	"HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335"	"HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335,PatternScan_NNMT_PNMT_TEMT"	-	no_errors
GHRHR	2692	broad.mit.edu	36	7	30980174	30980174	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	30980174	30980174	A	C	SNP	GHRHR	NM_000823	human	genbank	54_36p	1	reviewed	missense	c.647	p.N216T	1	"superfamily_SSF81321,HMMPfam_7tm_2"	"superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF81321,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
NEUROD6	63974	broad.mit.edu	36	7	31344732	31344732	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	31344732	31344732	C	G	SNP	NEUROD6	NM_022728	human	genbank	54_36p	-1	provisional	missense	c.676	p.D226H	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
C7orf16	10842	broad.mit.edu	36	7	31703111	31703111	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	31703111	31703111	T	C	SNP	C7orf16	NM_006658	human	genbank	54_36p	1	validated	silent	c.243	p.F81	1	NULL	NULL	-	no_errors
FKBP9	11328	broad.mit.edu	36	7	32963838	32963838	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	32963838	32963838	T	C	SNP	FKBP9	NM_007270	human	genbank	54_36p	1	validated	missense	c.128	p.V43A	1	superfamily_SSF54534	"superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET"	-	no_errors
NT5C3	51251	broad.mit.edu	36	7	33023709	33023709	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	33023709	33023709	A	T	SNP	NT5C3	NM_001002010	human	genbank	54_36p	-1	validated	missense	c.575	p.L192H	1	"superfamily_HAD-like,HMMPfam_UMPH-1"	"superfamily_HAD-like,HMMPfam_UMPH-1"	-	no_errors
BBS9	27241	broad.mit.edu	36	7	33161813	33161813	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	33161813	33161813	G	A	SNP	BBS9	NM_198428	human	genbank	54_36p	1	reviewed	missense	c.302	p.R101K	1	NULL	NULL	-	no_errors
HERPUD2	64224	broad.mit.edu	36	7	35641357	35641357	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	35641357	35641357	C	T	SNP	HERPUD2	NM_022373	human	genbank	54_36p	-1	validated	missense	c.854	p.R285Q	1	NULL	"superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin"	-	no_errors
HERPUD2	64224	broad.mit.edu	36	7	35641447	35641447	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	35641447	35641447	T	C	SNP	HERPUD2	NM_022373	human	genbank	54_36p	-1	validated	missense	c.764	p.E255G	1	NULL	"HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236"	-	no_errors
HERPUD2	64224	broad.mit.edu	36	7	35676413	35676413	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	35676413	35676413	G	C	SNP	HERPUD2	NM_022373	human	genbank	54_36p	-1	validated	silent	c.276	p.P92	1	superfamily_SSF54236	"HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236"	-	no_errors
EEPD1	80820	broad.mit.edu	36	7	36161160	36161160	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	36161160	36161160	G	T	SNP	EEPD1	NM_030636	human	genbank	54_36p	1	validated	silent	c.702	p.P234	0.2	NULL	"HMMPfam_HHH,superfamily_RuvA domain 2-like,HMMSmart_SM00278,HMMPfam_Exo_endo_phos,superfamily_DNase I-like"	-	no_errors
ELMO1	9844	broad.mit.edu	36	7	37265361	37265361	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	37265361	37265361	T	A	SNP	ELMO1	NM_014800	human	genbank	54_36p	-1	reviewed	silent	c.363	p.I121	0.99	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_ELMO_CED12,superfamily_PH domain-like"	-	no_errors
ELMO1	9844	broad.mit.edu	36	7	37348807	37348807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	37348807	37348807	C	T	SNP	ELMO1	NM_014800	human	genbank	54_36p	-1	reviewed	missense	c.13	p.A5T	0.72	NULL	"HMMPfam_ELMO_CED12,superfamily_ARM repeat,superfamily_PH domain-like"	-	no_errors
GPR141	353345	broad.mit.edu	36	7	37746965	37746965	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	37746965	37746965	C	T	SNP	GPR141	NM_181791	human	genbank	54_36p	1	provisional	missense	c.445	p.P149S	0.36	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
GPR141	353345	broad.mit.edu	36	7	37747314	37747314	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	37747314	37747314	A	G	SNP	GPR141	NM_181791	human	genbank	54_36p	1	provisional	missense	c.794	p.Y265C	0.97	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
GPR141	353345	broad.mit.edu	36	7	37747434	37747434	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	37747434	37747434	G	A	SNP	GPR141	NM_181791	human	genbank	54_36p	1	provisional	missense	c.914	p.R305H	0.05	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
TXNDC3	51314	broad.mit.edu	36	7	37883045	37883045	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	37883045	37883045	C	T	SNP	TXNDC3	NM_016616	human	genbank	54_36p	1	validated	missense	c.905	p.A302V	0.01	superfamily_NDK	"PatternScan_NDP_KINASES,HMMPfam_Thioredoxin,superfamily_Thiordxn-like_fd,PatternScan_THIOREDOXIN_1,superfamily_NDK,HMMSmart_NDK,HMMPfam_NDK"	-	no_errors
EPDR1	54749	broad.mit.edu	36	7	37926825	37926826	+	Missense_Mutation	DNP	CA	CA	AT	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	37926825	37926826	CA	AT	DNP	EPDR1	NM_017549	human	genbank	54_36p	1	reviewed	missense	c.119_120	p.P40H	0.000:0.000	NULL	"HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2"	-	no_errors
EPDR1	54749	broad.mit.edu	36	7	37926943	37926943	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	37926943	37926943	A	C	SNP	EPDR1	NM_017549	human	genbank	54_36p	1	reviewed	silent	c.237	p.A79	0	NULL	"HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2"	-	no_errors
EPDR1	54749	broad.mit.edu	36	7	37927028	37927028	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	37927028	37927028	G	C	SNP	EPDR1	NM_017549	human	genbank	54_36p	1	reviewed	missense	c.322	p.G108R	0	NULL	"HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2"	-	no_errors
EPDR1	54749	broad.mit.edu	36	7	37927045	37927045	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	37927045	37927045	G	C	SNP	EPDR1	NM_017549	human	genbank	54_36p	1	reviewed	silent	c.339	p.S113	0	NULL	"HMMPfam_Ependymin,PatternScan_EPENDYMIN_1,PatternScan_EPENDYMIN_2"	-	no_errors
AMPH	273	broad.mit.edu	36	7	38472374	38472374	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	38472374	38472374	C	T	SNP	AMPH	NM_001635	human	genbank	54_36p	-1	reviewed	splice_site	c.591-1	e8-1	1	-	-	-	no_errors
VPS41	27072	broad.mit.edu	36	7	38778646	38778646	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	38778646	38778646	C	T	SNP	VPS41	NM_014396	human	genbank	54_36p	-1	reviewed	splice_site	c.1128+1	e13+1	1	-	-	-	no_errors
CDK13	8621	broad.mit.edu	36	7	40094368	40094368	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	40094368	40094368	G	T	SNP	CDC2L5	NM_003718	human	genbank	54_36p	1	reviewed	missense	c.3148	p.G1050C	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
INHBA	3624	broad.mit.edu	36	7	41695796	41695796	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	7	41695796	41695796	C	T	SNP	INHBA	NM_002192	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.V420M	1	"superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204"	"HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1"	-	no_errors
PSMA2	5683	broad.mit.edu	36	7	42930912	42930912	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	42930912	42930912	C	T	SNP	PSMA2	NM_002787	human	genbank	54_36p	-1	reviewed	silent	c.261	p.V87	0.99	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome"	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome"	-	no_errors
HECW1	23072	broad.mit.edu	36	7	43462495	43462495	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	43462495	43462495	C	G	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	missense	c.2575	p.R859G	1	"superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1"	"HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
HECW1	23072	broad.mit.edu	36	7	43548047	43548047	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	43548047	43548047	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	silent	c.4173	p.L1391	1	"HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT"	"HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB"	-	no_errors
HECW1	23072	broad.mit.edu	36	7	43556662	43556662	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	43556662	43556662	G	A	SNP	HECW1	NM_015052	human	genbank	54_36p	1	validated	missense	c.4342	p.V1448M	1	"HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT"	"HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB"	-	no_errors
C7orf44	55744	broad.mit.edu	36	7	43651524	43651524	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	43651524	43651524	C	G	SNP	C7orf44	NM_018224	human	genbank	54_36p	-1	validated	splice_site	c.116-1	e3-1	0.01	-	-	-	no_errors
URGCP	55665	broad.mit.edu	36	7	43884411	43884411	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	43884411	43884411	C	T	SNP	URG4	NM_001077663	human	genbank	54_36p	-1	validated	silent	c.1176	p.G392	0.06	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
URGCP	55665	broad.mit.edu	36	7	43885175	43885175	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	43885175	43885175	C	T	SNP	URG4	NM_001077663	human	genbank	54_36p	-1	validated	missense	c.412	p.V138M	0	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SPDYE1	285955	broad.mit.edu	36	7	44013461	44013461	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	44013461	44013461	G	C	SNP	SPDYE1	NM_175064	human	genbank	54_36p	1	validated	silent	c.702	p.G234	0.01	NULL	NULL	-	no_errors
DBNL	28988	broad.mit.edu	36	7	44066903	44066904	+	Missense_Mutation	DNP	GA	GA	TG	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44066903	44066904	GA	TG	DNP	DBNL	NM_014063	human	genbank	54_36p	1	validated	missense	c.1159_1160	p.D387C	1.000:1.000	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	"superfamily_SSF55753,HMMSmart_ADF,HMMPfam_Cofilin_ADF,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
POLM	27434	broad.mit.edu	36	7	44085813	44085813	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	44085813	44085813	C	T	SNP	POLM	NM_013284	human	genbank	54_36p	-1	validated	missense	c.524	p.R175H	0.84	"superfamily_DNApol_B_N_like,HMMSmart_POLXc"	"HMMSmart_BRCT,superfamily_BRCT,superfamily_DNApol_B_N_like,HMMSmart_POLXc,superfamily_DNA_pol_lambd_fingers_domain,HMMPfam_DNA_pol_lambd_f,superfamily_SSF81301,PatternScan_DNA_POLYMERASE_X"	-	no_errors
POLD2	5425	broad.mit.edu	36	7	44128026	44128026	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	44128026	44128026	G	C	SNP	POLD2	NM_006230	human	genbank	54_36p	-1	validated	missense	c.152	p.A51G	1	NULL	HMMPfam_DNA_pol_E_B	-	no_errors
CAMK2B	816	broad.mit.edu	36	7	44253290	44253301	+	In_Frame_Del	DEL	GCCTCCAGGATC	-	GCCTCCAGGATC	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	GCCTCCAGGATC	GCCTCCAGGATC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44253290	44253301	GCCTCCAGGATC	-	DEL	CAMK2B	NM_001220	human	genbank	54_36p	-1	reviewed	in_frame_del	c.368_357	p.QILEA119in_frame_delH	0.990:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SSF54427,HMMPfam_CaMKII_AD"	"(deletion:cds_exon[44253244,44253316])"	no_errors
NPC1L1	29881	broad.mit.edu	36	7	44519640	44519640	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44519640	44519640	G	C	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	missense	c.4011	p.S1337R	0.2	NULL	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
NPC1L1	29881	broad.mit.edu	36	7	44542426	44542426	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	44542426	44542426	A	G	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	missense	c.1808	p.F603S	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
NPC1L1	29881	broad.mit.edu	36	7	44545867	44545867	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44545867	44545867	G	T	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	silent	c.654	p.I218	1	NULL	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
NPC1L1	29881	broad.mit.edu	36	7	44546314	44546314	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44546314	44546314	A	G	SNP	NPC1L1	NM_013389	human	genbank	54_36p	-1	validated	silent	c.207	p.D69	0.01	NULL	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
OGDH	4967	broad.mit.edu	36	7	44704337	44704337	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	44704337	44704337	C	A	SNP	OGDH	NM_002541	human	genbank	54_36p	1	reviewed	missense	c.2380	p.R794S	1	"HMMPfam_Transket_pyr,superfamily_SSF52518"	"HMMPfam_E1_dh,HMMPfam_Transket_pyr,superfamily_SSF52518"	-	no_errors
ZMIZ2	83637	broad.mit.edu	36	7	44762655	44762655	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	44762655	44762655	C	G	SNP	ZMIZ2	NM_031449	human	genbank	54_36p	1	validated	missense	c.157	p.Q53E	0.99	NULL	"superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
ZMIZ2	83637	broad.mit.edu	36	7	44765470	44765470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44765470	44765470	C	T	SNP	ZMIZ2	NM_031449	human	genbank	54_36p	1	validated	silent	c.879	p.P293	0.05	NULL	"HMMPfam_zf-MIZ,superfamily_RING/U-box"	-	no_errors
ZMIZ2	83637	broad.mit.edu	36	7	44767954	44767954	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44767954	44767954	C	A	SNP	ZMIZ2	NM_031449	human	genbank	54_36p	1	validated	missense	c.1521	p.H507Q	1	NULL	"HMMPfam_zf-MIZ,superfamily_RING/U-box"	-	no_errors
MYO1G	64005	broad.mit.edu	36	7	44983057	44983057	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	44983057	44983057	G	C	SNP	MYO1G	NM_033054	human	genbank	54_36p	-1	validated	silent	c.234	p.L78	0.92	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head"	"HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1"	-	no_errors
ADCY1	107	broad.mit.edu	36	7	45663904	45663904	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	45663904	45663904	C	T	SNP	ADCY1	NM_021116	human	genbank	54_36p	1	reviewed	missense	c.1202	p.T401M	1	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc"	"HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ADCY1	107	broad.mit.edu	36	7	45663954	45663954	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	45663954	45663954	G	A	SNP	ADCY1	NM_021116	human	genbank	54_36p	1	reviewed	missense	c.1252	p.V418M	1	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1"	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ADCY1	107	broad.mit.edu	36	7	45716742	45716742	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	45716742	45716742	G	A	SNP	ADCY1	NM_021116	human	genbank	54_36p	1	reviewed	missense	c.3023	p.R1008Q	1	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1"	"HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
TNS3	64759	broad.mit.edu	36	7	47284306	47284306	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	47284306	47284306	T	C	SNP	TNS3	NM_022748	human	genbank	54_36p	-1	validated	missense	c.4231	p.T1411A	1	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PTB"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PTB"	-	no_errors
TNS3	64759	broad.mit.edu	36	7	47309386	47309386	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	47309386	47309386	T	A	SNP	TNS3	NM_022748	human	genbank	54_36p	-1	validated	silent	c.3144	p.S1048	0	NULL	"HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,HMMSmart_SM00462,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain"	-	no_errors
TNS3	64759	broad.mit.edu	36	7	47417873	47417873	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	47417873	47417873	G	A	SNP	TNS3	NM_022748	human	genbank	54_36p	-1	validated	nonsense	c.700	p.Q234*	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2"	"HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,HMMSmart_SM00462,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain"	-	no_errors
PKD1L1	168507	broad.mit.edu	36	7	47817969	47817969	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	47817969	47817969	C	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.7552	p.A2518T	0	HMMPfam_PKD_channel	"HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel"	-	no_errors
PKD1L1	168507	broad.mit.edu	36	7	47818010	47818010	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	47818010	47818010	G	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	nonsense	c.7511	p.S2504*	0.07	HMMPfam_PKD_channel	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
PKD1L1	168507	broad.mit.edu	36	7	47839289	47839289	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	47839289	47839289	C	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	silent	c.6261	p.K2087	0	NULL	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
PKD1L1	168507	broad.mit.edu	36	7	47845618	47845618	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	47845618	47845618	C	T	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.5720	p.R1907H	0	"HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)"	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
PKD1L1	168507	broad.mit.edu	36	7	47910608	47910608	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	47910608	47910608	A	C	SNP	PKD1L1	NM_138295	human	genbank	54_36p	-1	reviewed	missense	c.1823	p.V608G	0.97	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain"	"HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel"	-	no_errors
UPP1	7378	broad.mit.edu	36	7	48114399	48114399	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	48114399	48114399	C	T	SNP	UPP1	NM_003364	human	genbank	54_36p	1	validated	missense	c.853	p.R285C	0.96	"superfamily_Purine and uridine phosphorylases,HMMPfam_PNP_UDP_1"	"superfamily_Purine and uridine phosphorylases,HMMPfam_PNP_UDP_1,PatternScan_PNP_UDP_1"	-	no_errors
ABCA13	154664	broad.mit.edu	36	7	48289036	48289036	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	48289036	48289036	C	T	SNP	ABCA13	ENST00000319379	human	ensembl	54_36p	1	known	nonsense	c.7534	p.Q2512*	0.08	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	-	no_start_codon
ABCA13	154664	broad.mit.edu	36	7	48399249	48399249	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	48399249	48399249	T	C	SNP	ABCA13	ENST00000319379	human	ensembl	54_36p	1	known	missense	c.11375	p.V3792A	0.98	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_start_codon
FIGNL1	63979	broad.mit.edu	36	7	50481161	50481161	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	50481161	50481161	A	C	SNP	FIGNL1	NM_001042762	human	genbank	54_36p	-1	validated	missense	c.1319	p.F440C	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C"	-	no_errors
FIGNL1	63979	broad.mit.edu	36	7	50482427	50482427	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	50482427	50482427	T	A	SNP	FIGNL1	NM_001042762	human	genbank	54_36p	-1	validated	missense	c.53	p.Y18F	1	NULL	"HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GRB10	2887	broad.mit.edu	36	7	50709713	50709713	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	50709713	50709713	A	G	SNP	GRB10	NM_005311	human	genbank	54_36p	-1	reviewed	silent	c.276	p.A92	0.01	NULL	"HMMPfam_RA,HMMSmart_SM00314,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_BPS,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
GRB10	2887	broad.mit.edu	36	7	50709731	50709731	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	50709731	50709731	G	C	SNP	GRB10	NM_005311	human	genbank	54_36p	-1	reviewed	silent	c.258	p.A86	0.06	NULL	"HMMPfam_RA,HMMSmart_SM00314,HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_BPS,superfamily_PH domain-like,superfamily_SH2 domain"	-	no_errors
COBL	23242	broad.mit.edu	36	7	51063831	51063831	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	51063831	51063831	T	G	SNP	COBL	NM_015198	human	genbank	54_36p	-1	validated	missense	c.2456	p.K819T	0.03	NULL	"HMMPfam_Cobl,HMMPfam_WH2,HMMSmart_SM00246"	-	no_errors
COBL	23242	broad.mit.edu	36	7	51120394	51120394	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	51120394	51120394	G	C	SNP	COBL	NM_015198	human	genbank	54_36p	-1	validated	silent	c.1059	p.R353	0.06	NULL	"HMMPfam_WH2,HMMSmart_SM00246,HMMPfam_Cobl"	-	no_errors
VSTM2A	222008	broad.mit.edu	36	7	54579852	54579852	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	54579852	54579852	G	T	SNP	VSTM2A	NM_182546	human	genbank	54_36p	1	validated	silent	c.123	p.G41	1	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
VSTM2A	222008	broad.mit.edu	36	7	54585125	54585125	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	54585125	54585125	C	A	SNP	VSTM2A	NM_182546	human	genbank	54_36p	1	validated	nonsense	c.402	p.Y134*	1	"HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726"	-	no_errors
EGFR	1956	broad.mit.edu	36	7	55191120	55191120	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	55191120	55191120	G	A	SNP	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	silent	c.993	p.G331	1	"HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
EGFR	1956	broad.mit.edu	36	7	55209193	55209193	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	55209193	55209193	A	G	SNP	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	missense	c.2147	p.K716R	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
EGFR	1956	broad.mit.edu	36	7	55240662	55240662	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	55240662	55240662	A	G	SNP	EGFR	NM_005228	human	genbank	54_36p	1	reviewed	missense	c.3491	p.Q1164R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LANCL2	55915	broad.mit.edu	36	7	55435292	55435292	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	55435292	55435292	G	A	SNP	LANCL2	NM_018697	human	genbank	54_36p	1	validated	splice_site	c.678+1	e4+1	1	-	-	-	no_errors
ZNF713	349075	broad.mit.edu	36	7	55958463	55958463	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	55958463	55958463	C	A	SNP	ZNF713	NM_182633	human	genbank	54_36p	1	provisional	missense	c.163	p.L55I	0.16	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PSPH	5723	broad.mit.edu	36	7	56046949	56046949	+	Nonstop_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	56046949	56046949	T	A	SNP	PSPH	NM_004577	human	genbank	54_36p	-1	reviewed	nonstop	c.678	p.*226Y	0.01	NULL	"superfamily_HAD-like,HMMPfam_Hydrolase"	-	no_errors
ZNF479	90827	broad.mit.edu	36	7	57192565	57192565	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	57192565	57192565	C	G	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	missense	c.499	p.G167R	0	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF479	90827	broad.mit.edu	36	7	57198322	57198322	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	57198322	57198322	C	T	SNP	ZNF479	NM_033273	human	genbank	54_36p	-1	provisional	missense	c.85	p.E29K	0.97	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF680	340252	broad.mit.edu	36	7	63642220	63642220	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	63642220	63642220	G	T	SNP	ZNF680	NM_178558	human	genbank	54_36p	-1	validated	missense	c.56	p.A19D	0.92	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF107	51427	broad.mit.edu	36	7	63804233	63804233	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	63804233	63804233	A	T	SNP	ZNF107	NM_001013746	human	genbank	54_36p	1	validated	missense	c.116	p.Y39F	0.16	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CRCP	27297	broad.mit.edu	36	7	65217335	65217335	+	5'UTR	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	65217335	65217335	G	A	SNP	CRCP	NM_014478	human	genbank	54_36p	1	reviewed	5_prime_untranslated_region	c.-50	NULL	0	-	-	-	no_errors
KCTD7	154881	broad.mit.edu	36	7	65741600	65741600	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	65741600	65741600	G	C	SNP	KCTD7	NM_153033	human	genbank	54_36p	1	validated	silent	c.816	p.V272	1	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	-	no_errors
RABGEF1	27342	broad.mit.edu	36	7	65907680	65907680	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	65907680	65907680	T	C	SNP	RABGEF1	NM_014504	human	genbank	54_36p	1	validated	silent	c.939	p.D313	1	"superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9"	"HMMPfam_zf-A20,HMMSmart_ZnF_A20,superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9"	-	no_errors
C7orf42	55069	broad.mit.edu	36	7	66047479	66047479	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	66047479	66047479	G	C	SNP	C7orf42	NM_017994	human	genbank	54_36p	1	validated	missense	c.241	p.D81H	1	NULL	NULL	-	no_errors
SBDS	51119	broad.mit.edu	36	7	66093671	66093671	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	66093671	66093671	T	A	SNP	SBDS	NM_016038	human	genbank	54_36p	-1	reviewed	missense	c.512	p.H171L	1	HMMPfam_SBDS_C	"superfamily_FYSH domain,HMMPfam_SBDS,PatternScan_UPF0023,superfamily_Hypothetical protein AF0491 middle domain,HMMPfam_SBDS_C"	-	no_errors
TYW1	55253	broad.mit.edu	36	7	66169767	66169767	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	66169767	66169767	C	G	SNP	TYW1	NM_018264	human	genbank	54_36p	1	validated	missense	c.1216	p.R406G	1	NULL	"superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes,HMMPfam_Wyosine_form"	-	no_errors
AUTS2	26053	broad.mit.edu	36	7	69874524	69874524	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	69874524	69874524	C	T	SNP	AUTS2	NM_015570	human	genbank	54_36p	1	validated	silent	c.1788	p.P596	1	NULL	NULL	-	no_errors
AUTS2	26053	broad.mit.edu	36	7	69893124	69893124	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	69893124	69893124	G	A	SNP	AUTS2	NM_015570	human	genbank	54_36p	1	validated	missense	c.2986	p.A996T	0.99	NULL	NULL	-	no_errors
WBSCR17	64409	broad.mit.edu	36	7	70491247	70491247	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	70491247	70491247	C	T	SNP	WBSCR17	NM_022479	human	genbank	54_36p	1	reviewed	silent	c.513	p.S171	0.21	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458"	-	no_errors
TRIM50	135892	broad.mit.edu	36	7	72365147	72365147	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	72365147	72365147	C	G	SNP	TRIM50	NM_178125	human	genbank	54_36p	-1	provisional	missense	c.1170	p.K390N	1	"HMMPfam_SPRY,HMMSmart_SM00449"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
BAZ1B	9031	broad.mit.edu	36	7	72522647	72522647	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	72522647	72522647	C	T	SNP	BAZ1B	NM_032408	human	genbank	54_36p	-1	reviewed	missense	c.2696	p.R899H	1	NULL	"HMMPfam_WAC_Acf1_DNA_bd,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
BAZ1B	9031	broad.mit.edu	36	7	72529330	72529330	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	72529330	72529330	T	C	SNP	BAZ1B	NM_032408	human	genbank	54_36p	-1	reviewed	silent	c.2397	p.K799	1	NULL	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_WAC_Acf1_DNA_bd,PatternScan_BROMODOMAIN_1,HMMSmart_SM00571,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
BAZ1B	9031	broad.mit.edu	36	7	72545112	72545112	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	72545112	72545112	T	A	SNP	BAZ1B	NM_032408	human	genbank	54_36p	-1	reviewed	missense	c.647	p.K216I	1	NULL	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_WAC_Acf1_DNA_bd,PatternScan_BROMODOMAIN_1,HMMSmart_SM00571,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
BCL7B	9275	broad.mit.edu	36	7	72604447	72604447	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	72604447	72604447	T	A	SNP	BCL7B	NM_001707	human	genbank	54_36p	-1	reviewed	missense	c.154	p.T52S	1	HMMPfam_BCL_N	HMMPfam_BCL_N	-	no_errors
MLXIPL	51085	broad.mit.edu	36	7	72648536	72648536	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	72648536	72648536	G	A	SNP	MLXIPL	NM_032951	human	genbank	54_36p	-1	reviewed	silent	c.1941	p.T647	0.48	superfamily_HLH helix-loop-helix DNA-binding domain	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
VPS37D	155382	broad.mit.edu	36	7	72723373	72723374	+	Missense_Mutation	DNP	AC	AC	TT	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	72723373	72723374	AC	TT	DNP	VPS37D	NM_001077621	human	genbank	54_36p	1	validated	missense	c.487_488	p.T163L	0.952:0.905	HMMPfam_Mod_r	HMMPfam_Mod_r	-	no_errors
ELN	2006	broad.mit.edu	36	7	73093497	73093497	+	Missense_Mutation	SNP	C	C	A	rs41350445	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	73093497	73093497	C	A	SNP	ELN	NM_000501	human	genbank	54_36p	1	reviewed	missense	c.212	p.A71E	0	NULL	"PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES"	-	no_errors
ELN	2006	broad.mit.edu	36	7	73107035	73107035	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	73107035	73107035	G	A	SNP	ELN	NM_000501	human	genbank	54_36p	1	reviewed	missense	c.1150	p.G384R	0.97	NULL	"PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES"	-	no_errors
ELN	2006	broad.mit.edu	36	7	73109929	73109929	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	73109929	73109929	G	T	SNP	ELN	NM_000501	human	genbank	54_36p	1	reviewed	missense	c.1381	p.A461S	0.97	NULL	"PatternScan_ENDONUCLEASE_III_2,PatternScan_HEXAPEP_TRANSFERASES"	-	no_errors
GTF2IRD1	9569	broad.mit.edu	36	7	73560391	73560391	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	73560391	73560391	C	T	SNP	GTF2IRD1	NM_016328	human	genbank	54_36p	1	reviewed	silent	c.45	p.C15	1	NULL	HMMPfam_GTF2I	-	no_errors
GTF2IRD1	9569	broad.mit.edu	36	7	73643201	73643201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	73643201	73643201	C	A	SNP	GTF2IRD1	NM_016328	human	genbank	54_36p	1	reviewed	missense	c.2555	p.P852H	1	HMMPfam_GTF2I	HMMPfam_GTF2I	-	no_errors
GTF2IRD2	84163	broad.mit.edu	36	7	73849753	73849753	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	73849753	73849753	C	T	SNP	GTF2IRD2	NM_173537	human	genbank	54_36p	-1	validated	silent	c.2034	p.V678	0.99	NULL	HMMPfam_GTF2I	-	no_errors
SPDYE5	442590	broad.mit.edu	36	7	74962437	74962437	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	74962437	74962437	T	C	SNP	SPDYE5	ENST00000301990	human	ensembl	54_36p	1	known	missense	c.67	p.C23R	0	NULL	NULL	-	no_errors
HIP1	3092	broad.mit.edu	36	7	75021418	75021418	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	75021418	75021418	G	C	SNP	HIP1	NM_005338	human	genbank	54_36p	-1	reviewed	silent	c.2088	p.A696	1	NULL	"HMMPfam_ANTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273,superfamily_ARM repeat,superfamily_I/LWEQ domain (Pfam 01608),HMMSmart_SM00307,HMMPfam_I_LWEQ"	-	no_errors
HIP1	3092	broad.mit.edu	36	7	75025480	75025480	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	75025480	75025480	T	G	SNP	HIP1	NM_005338	human	genbank	54_36p	-1	reviewed	missense	c.1391	p.N464T	1	NULL	"HMMPfam_I_LWEQ,HMMSmart_SM00307,superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_ARM repeat,superfamily_I/LWEQ domain (Pfam 01608)"	-	no_errors
POR	5447	broad.mit.edu	36	7	75453614	75453614	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	75453614	75453614	A	T	SNP	POR	NM_000941	human	genbank	54_36p	1	reviewed	missense	c.1922	p.D641V	1	"superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1"	"superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1"	-	no_errors
MDH2	4191	broad.mit.edu	36	7	75533567	75533567	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	75533567	75533567	A	G	SNP	MDH2	NM_005918	human	genbank	54_36p	1	reviewed	missense	c.920	p.K307R	1	"superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C"	"superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N,PatternScan_MDH,superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C"	-	no_errors
YWHAG	7532	broad.mit.edu	36	7	75797285	75797286	+	Missense_Mutation	DNP	AC	AC	TT	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	75797285	75797286	AC	TT	DNP	YWHAG	NM_012479	human	genbank	54_36p	-1	reviewed	missense	c.289_288	p.C97S	1.000:0.882	"superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101"	"superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2"	-	no_errors
YWHAG	7532	broad.mit.edu	36	7	75797405	75797405	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	75797405	75797405	G	A	SNP	YWHAG	NM_012479	human	genbank	54_36p	-1	reviewed	missense	c.169	p.R57C	1	"HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein"	"HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2,superfamily_14-3-3 protein"	-	no_errors
RSBN1L	222194	broad.mit.edu	36	7	77163736	77163736	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	77163736	77163736	C	T	SNP	RSBN1L	NM_198467	human	genbank	54_36p	1	validated	missense	c.14	p.P5L	1	NULL	NULL	-	no_errors
RSBN1L	222194	broad.mit.edu	36	7	77245929	77245929	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	77245929	77245929	T	A	SNP	RSBN1L	NM_198467	human	genbank	54_36p	1	validated	missense	c.2049	p.S683R	1	NULL	NULL	-	no_errors
MAGI2	9863	broad.mit.edu	36	7	77627333	77627333	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	77627333	77627333	G	T	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	silent	c.2790	p.G930	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	###############################################################################################################################################################################################################################################################	-	no_errors
MAGI2	9863	broad.mit.edu	36	7	77723552	77723552	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	77723552	77723552	C	T	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	missense	c.1691	p.R564Q	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MAGI2	9863	broad.mit.edu	36	7	78474351	78474351	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	78474351	78474351	T	G	SNP	MAGI2	NM_012301	human	genbank	54_36p	-1	reviewed	missense	c.409	p.T137P	1	"HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
HGF	3082	broad.mit.edu	36	7	81196910	81196910	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	81196910	81196910	C	T	SNP	HGF	NM_000601	human	genbank	54_36p	-1	reviewed	nonsense	c.987	p.W329*	1	"superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle"	"HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases"	-	no_errors
CACNA2D1	781	broad.mit.edu	36	7	81429721	81429721	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	81429721	81429721	C	A	SNP	CACNA2D1	NM_000722	human	genbank	54_36p	-1	reviewed	missense	c.2807	p.S936I	1	NULL	"HMMPfam_VWA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Cache_1,HMMPfam_VGCC_alpha2"	-	no_errors
CACNA2D1	781	broad.mit.edu	36	7	81436219	81436219	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	81436219	81436219	C	T	SNP	CACNA2D1	NM_000722	human	genbank	54_36p	-1	reviewed	missense	c.2315	p.G772E	1	NULL	"HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Cache_1,HMMPfam_VWA_N,HMMPfam_VGCC_alpha2,superfamily_SSF53300"	-	no_errors
CACNA2D1	781	broad.mit.edu	36	7	81552087	81552087	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	81552087	81552087	C	T	SNP	CACNA2D1	NM_000722	human	genbank	54_36p	-1	reviewed	missense	c.592	p.E198K	0.99	HMMPfam_VWA_N	"HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Cache_1,HMMPfam_VWA_N,HMMPfam_VGCC_alpha2,superfamily_SSF53300"	-	no_errors
PCLO	27445	broad.mit.edu	36	7	82382277	82382277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	82382277	82382277	C	T	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	missense	c.12961	p.A4321T	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMPfam_zf-piccolo,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
PCLO	27445	broad.mit.edu	36	7	82419794	82419794	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	82419794	82419794	G	A	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	missense	c.8411	p.A2804V	0.01	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
PCLO	27445	broad.mit.edu	36	7	82423663	82423663	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	82423663	82423663	T	C	SNP	PCLO	NM_033026	human	genbank	54_36p	-1	validated	silent	c.4542	p.E1514	0.99	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
SEMA3E	9723	broad.mit.edu	36	7	82957408	82957408	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	82957408	82957408	T	C	SNP	SEMA3E	NM_012431	human	genbank	54_36p	-1	provisional	silent	c.234	p.V78	0.97	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
SEMA3E	9723	broad.mit.edu	36	7	82957428	82957428	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	82957428	82957428	C	G	SNP	SEMA3E	NM_012431	human	genbank	54_36p	-1	provisional	missense	c.214	p.V72L	1	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema"	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMSmart_IG,HMMSmart_PSI,HMMPfam_ig,superfamily_Plexin-like_fold,superfamily_SSF48726"	-	no_errors
SEMA3A	10371	broad.mit.edu	36	7	83602188	83602188	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	83602188	83602188	T	A	SNP	SEMA3A	NM_006080	human	genbank	54_36p	-1	reviewed	missense	c.128	p.N43I	1	superfamily_Sema	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
SEMA3D	223117	broad.mit.edu	36	7	84474061	84474061	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	84474061	84474061	C	G	SNP	SEMA3D	NM_152754	human	genbank	54_36p	-1	validated	missense	c.1901	p.R634P	1	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	-	no_errors
GRM3	2913	broad.mit.edu	36	7	86306941	86306941	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	86306941	86306941	A	G	SNP	GRM3	NM_000840	human	genbank	54_36p	1	reviewed	silent	c.2175	p.T725	0.87	HMMPfam_7tm_3	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
KIAA1324L	222223	broad.mit.edu	36	7	86379340	86379340	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	86379340	86379340	C	T	SNP	KIAA1324L	ENST00000335407	human	ensembl	54_36p	-1	known	splice_site	c.1431+2	e11+2	1	-	-	-	no_errors
KIAA1324L	222223	broad.mit.edu	36	7	86382045	86382045	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	86382045	86382045	G	T	SNP	KIAA1324L	NM_152748	human	genbank	54_36p	-1	validated	missense	c.941	p.T314N	1	superfamily_Grow_fac_recept	"superfamily_Man6php_recept,superfamily_Grow_fac_recept,HMMPfam_NCD3G"	-	no_errors
KIAA1324L	222223	broad.mit.edu	36	7	86394155	86394155	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	86394155	86394155	T	C	SNP	KIAA1324L	NM_152748	human	genbank	54_36p	-1	validated	missense	c.383	p.Y128C	1	NULL	"superfamily_Man6php_recept,superfamily_Grow_fac_recept,HMMPfam_NCD3G"	-	no_errors
KIAA1324L	222223	broad.mit.edu	36	7	86394166	86394166	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	86394166	86394166	T	G	SNP	KIAA1324L	NM_152748	human	genbank	54_36p	-1	validated	silent	c.372	p.T124	1	NULL	"superfamily_Man6php_recept,superfamily_Grow_fac_recept,HMMPfam_NCD3G"	-	no_errors
CROT	54677	broad.mit.edu	36	7	86865895	86865895	+	Nonstop_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	86865895	86865895	A	G	SNP	CROT	NM_021151	human	genbank	54_36p	1	reviewed	nonstop	c.1838	p.*613W	1	NULL	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2"	-	no_errors
ABCB1	5243	broad.mit.edu	36	7	86982512	86982512	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	86982512	86982512	G	A	SNP	ABCB1	NM_000927	human	genbank	54_36p	-1	reviewed	missense	c.3253	p.R1085W	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCB1	5243	broad.mit.edu	36	7	87008683	87008683	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	87008683	87008683	G	A	SNP	ABCB1	NM_000927	human	genbank	54_36p	-1	reviewed	nonsense	c.2245	p.R749*	0	"HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCB1	5243	broad.mit.edu	36	7	87011427	87011427	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	87011427	87011427	C	A	SNP	ABCB1	NM_000927	human	genbank	54_36p	-1	reviewed	missense	c.2165	p.G722V	1	"HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DBF4	10926	broad.mit.edu	36	7	87374784	87374784	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	87374784	87374784	C	G	SNP	DBF4	NM_006716	human	genbank	54_36p	1	validated	silent	c.1395	p.S465	0.13	NULL	"HMMPfam_zf-DBF,HMMSmart_SM00586"	-	no_errors
ADAM22	53616	broad.mit.edu	36	7	87598675	87598675	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	87598675	87598675	T	C	SNP	ADAM22	NM_021723	human	genbank	54_36p	1	reviewed	silent	c.981	p.V327	0.99	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM22	53616	broad.mit.edu	36	7	87600175	87600175	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	87600175	87600175	G	A	SNP	ADAM22	NM_021723	human	genbank	54_36p	1	reviewed	silent	c.1050	p.S350	0.92	"HMMPfam_Reprolysin,superfamily_Metalloproteases (zincins) catalytic domain"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM22	53616	broad.mit.edu	36	7	87601635	87601635	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	87601635	87601635	T	C	SNP	ADAM22	NM_021723	human	genbank	54_36p	1	reviewed	missense	c.1133	p.I378T	1	"HMMPfam_Reprolysin,superfamily_Metalloproteases (zincins) catalytic domain"	###############################################################################################################################################################################################################################################################	-	no_errors
ZNF804B	219578	broad.mit.edu	36	7	88801387	88801387	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	88801387	88801387	T	A	SNP	ZNF804B	NM_181646	human	genbank	54_36p	1	provisional	missense	c.1155	p.D385E	0.98	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF804B	219578	broad.mit.edu	36	7	88802287	88802287	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	88802287	88802287	C	A	SNP	ZNF804B	NM_181646	human	genbank	54_36p	1	provisional	silent	c.2055	p.T685	0	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF804B	219578	broad.mit.edu	36	7	88802338	88802338	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	88802338	88802338	G	C	SNP	ZNF804B	NM_181646	human	genbank	54_36p	1	provisional	missense	c.2106	p.Q702H	0	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF804B	219578	broad.mit.edu	36	7	88803028	88803028	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	88803028	88803028	A	G	SNP	ZNF804B	NM_181646	human	genbank	54_36p	1	provisional	silent	c.2796	p.V932	0.88	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
STEAP2	261729	broad.mit.edu	36	7	89692768	89692768	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	89692768	89692768	T	C	SNP	STEAP2	NM_001040665	human	genbank	54_36p	1	reviewed	missense	c.436	p.F146L	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_F420_oxidored,HMMPfam_Ferric_reduct"	-	no_errors
C7orf63	79846	broad.mit.edu	36	7	89776561	89776561	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	89776561	89776561	A	C	SNP	C7orf63	NM_001039706	human	genbank	54_36p	1	validated	missense	c.2461	p.K821Q	0	NULL	superfamily_ARM-type_fold	-	no_errors
FZD1	8321	broad.mit.edu	36	7	90732932	90732932	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	90732932	90732932	C	T	SNP	FZD1	NM_003505	human	genbank	54_36p	1	reviewed	silent	c.801	p.G267	0.03	NULL	"HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled"	-	no_errors
AKAP9	10142	broad.mit.edu	36	7	91547318	91547318	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	91547318	91547318	A	T	SNP	AKAP9	NM_005751	human	genbank	54_36p	1	reviewed	missense	c.7935	p.E2645D	0.69	NULL	"PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil"	-	no_errors
AKAP9	10142	broad.mit.edu	36	7	91550465	91550465	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	91550465	91550465	G	T	SNP	AKAP9	NM_005751	human	genbank	54_36p	1	reviewed	missense	c.8206	p.V2736F	0.12	NULL	"PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil"	-	no_errors
AKAP9	10142	broad.mit.edu	36	7	91550881	91550881	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	91550881	91550881	G	A	SNP	AKAP9	NM_005751	human	genbank	54_36p	1	reviewed	silent	c.8622	p.V2874	0.96	NULL	"PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil"	-	no_errors
PEX1	5189	broad.mit.edu	36	7	91985096	91985096	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	91985096	91985096	C	T	SNP	PEX1	NM_000466	human	genbank	54_36p	-1	reviewed	silent	c.669	p.V223	0	NULL	"superfamily_Cdc48 domain 2-like,HMMPfam_PEX-2N,superfamily_ADC-like,HMMPfam_PEX-1N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
C7orf64	84060	broad.mit.edu	36	7	92002185	92002185	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	92002185	92002185	A	G	SNP	C7orf64	NM_032120	human	genbank	54_36p	1	validated	missense	c.982	p.T328A	0.94	NULL	superfamily_RNA-binding domain RBD	-	no_errors
C7orf64	84060	broad.mit.edu	36	7	92002196	92002196	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	92002196	92002196	T	C	SNP	C7orf64	NM_032120	human	genbank	54_36p	1	validated	silent	c.993	p.N331	0.04	NULL	superfamily_RNA-binding domain RBD	-	no_errors
FAM133B	257415	broad.mit.edu	36	7	92033277	92033277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	92033277	92033277	C	T	SNP	FAM133B	NM_152789	human	genbank	54_36p	-1	validated	missense	c.644	p.R215Q	1	NULL	NULL	-	no_errors
SAMD9	54809	broad.mit.edu	36	7	92571071	92571071	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	92571071	92571071	C	G	SNP	SAMD9	NM_017654	human	genbank	54_36p	-1	validated	missense	c.2276	p.R759T	1	NULL	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
SAMD9L	219285	broad.mit.edu	36	7	92599149	92599149	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	92599149	92599149	C	A	SNP	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	nonsense	c.4072	p.E1358*	0.99	NULL	superfamily_SAM/Pointed domain	-	no_errors
SAMD9L	219285	broad.mit.edu	36	7	92601563	92601564	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	92601563	92601564	-	C	INS	SAMD9L	NM_152703	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1658_1657	p.V553fs	0.192:0.197	NULL	superfamily_SAM/Pointed domain	-	no_errors
HEPACAM2	253012	broad.mit.edu	36	7	92663113	92663113	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	92663113	92663113	T	C	SNP	HEPACAM2	NM_001039372	human	genbank	54_36p	-1	provisional	silent	c.1239	p.E413	1	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408"	-	no_errors
HEPACAM2	253012	broad.mit.edu	36	7	92682755	92682755	+	Missense_Mutation	SNP	G	G	C	rs35608547	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	92682755	92682755	G	C	SNP	HEPACAM2	NM_001039372	human	genbank	54_36p	-1	provisional	missense	c.610	p.L204V	0.97	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
HEPACAM2	253012	broad.mit.edu	36	7	92682905	92682905	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	92682905	92682905	G	C	SNP	HEPACAM2	NM_001039372	human	genbank	54_36p	-1	provisional	missense	c.460	p.H154D	0.1	superfamily_Immunoglobulin	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
CCDC132	55610	broad.mit.edu	36	7	92764000	92764000	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	92764000	92764000	T	G	SNP	CCDC132	NM_017667	human	genbank	54_36p	1	validated	missense	c.1178	p.L393R	1	NULL	"HMMPfam_DUF2450,HMMPfam_DUF2451"	-	no_errors
CCDC132	55610	broad.mit.edu	36	7	92808792	92808792	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	92808792	92808792	T	C	SNP	CCDC132	NM_017667	human	genbank	54_36p	1	validated	silent	c.2176	p.L726	0.98	HMMPfam_DUF2451	"HMMPfam_DUF2451,HMMPfam_DUF2450"	-	no_errors
CALCR	799	broad.mit.edu	36	7	92946674	92946674	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	92946674	92946674	G	A	SNP	CALCR	NM_001742	human	genbank	54_36p	-1	validated	nonsense	c.133	p.R45*	0	superfamily_SSF111418	"superfamily_SSF111418,superfamily_SSF81321,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
CALCR	799	broad.mit.edu	36	7	92946683	92946683	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	92946683	92946683	C	T	SNP	CALCR	NM_001742	human	genbank	54_36p	-1	validated	missense	c.124	p.V42I	0	superfamily_SSF111418	"HMMPfam_7tm_2,HMMPfam_HRM,HMMSmart_HormR,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF111418,superfamily_SSF81321"	-	no_errors
COL1A2	1278	broad.mit.edu	36	7	93890328	93890328	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	93890328	93890328	G	A	SNP	COL1A2	NM_000089	human	genbank	54_36p	1	reviewed	missense	c.2527	p.A843T	0.13	HMMPfam_Collagen	"HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
SGCE	8910	broad.mit.edu	36	7	94086198	94086198	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	94086198	94086198	G	A	SNP	SGCE	NM_001099401	human	genbank	54_36p	-1	reviewed	missense	c.470	p.P157L	1	"HMMPfam_Sarcoglycan_2,HMMSmart_SM00736"	"HMMPfam_Sarcoglycan_2,superfamily_Cadherin-like,HMMSmart_SM00736"	-	no_errors
PPP1R9A	55607	broad.mit.edu	36	7	94665648	94665648	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	94665648	94665648	G	C	SNP	PPP1R9A	NM_017650	human	genbank	54_36p	1	validated	missense	c.1806	p.L602F	1	superfamily_PDZ domain-like	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
DLX6	5166	broad.mit.edu	36	7	96474989	96474989	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	96474989	96474989	G	T	SNP	DLX6	NM_005222	human	genbank	54_36p	1	reviewed	missense	c.456	p.Q152H	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
DLX6	5166	broad.mit.edu	36	7	96477083	96477083	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	96477083	96477083	A	T	SNP	DLX6	NM_005222	human	genbank	54_36p	1	reviewed	nonsense	c.586	p.K196*	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
DLX5	1749	broad.mit.edu	36	7	96491753	96491753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	96491753	96491753	G	C	SNP	DLX5	NM_005221	human	genbank	54_36p	-1	reviewed	missense	c.119	p.S40C	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ACN9	57001	broad.mit.edu	36	7	96585054	96585054	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	96585054	96585054	A	G	SNP	ACN9	NM_020186	human	genbank	54_36p	1	validated	missense	c.83	p.K28R	1	HMMPfam_ACN9	HMMPfam_ACN9	-	no_errors
BAIAP2L1	55971	broad.mit.edu	36	7	97775009	97775009	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	97775009	97775009	C	G	SNP	BAIAP2L1	NM_018842	human	genbank	54_36p	-1	provisional	missense	c.1091	p.G364A	1	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2"	"HMMPfam_IMD,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2"	-	no_errors
TRRAP	8295	broad.mit.edu	36	7	98351404	98351404	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	98351404	98351404	C	A	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	silent	c.2322	p.L774	1	superfamily_ARM repeat	"superfamily_ARM repeat,PatternScan_COPPER_BLUE,superfamily_Protein prenylyltransferase,HMMPfam_FAT,superfamily_TPR-like,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC"	-	no_errors
TRRAP	8295	broad.mit.edu	36	7	98391788	98391788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	98391788	98391788	C	T	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	silent	c.5946	p.I1982	0.42	superfamily_ARM repeat	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like"	-	no_errors
TRRAP	8295	broad.mit.edu	36	7	98411725	98411725	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	98411725	98411725	C	T	SNP	TRRAP	NM_003496	human	genbank	54_36p	1	validated	silent	c.7782	p.S2594	1	superfamily_ARM repeat	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like"	-	no_errors
SMURF1	57154	broad.mit.edu	36	7	98473957	98473957	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	98473957	98473957	C	A	SNP	SMURF1	NM_020429	human	genbank	54_36p	-1	reviewed	nonsense	c.1756	p.E586*	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
BUD31	8896	broad.mit.edu	36	7	98846658	98846658	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	98846658	98846658	A	G	SNP	BUD31	NM_003910	human	genbank	54_36p	1	validated	missense	c.7	p.K3E	1	HMMPfam_G10	"HMMPfam_G10,PatternScan_G10_1,PatternScan_G10_2"	-	no_errors
PTCD1	26024	broad.mit.edu	36	7	98859514	98859514	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	98859514	98859514	C	T	SNP	PTCD1	NM_015545	human	genbank	54_36p	-1	validated	silent	c.1740	p.K580	0.21	NULL	HMMPfam_PPR	-	no_errors
ATP5J2	9551	broad.mit.edu	36	7	98895697	98895697	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	98895697	98895697	C	G	SNP	ATP5J2	NM_004889	human	genbank	54_36p	-1	reviewed	missense	c.87	p.W29C	1	HMMPfam_WRW	HMMPfam_WRW	-	no_errors
ZKSCAN5	23660	broad.mit.edu	36	7	98961610	98961610	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	98961610	98961610	G	C	SNP	ZKSCAN5	NM_014569	human	genbank	54_36p	1	reviewed	missense	c.1011	p.K337N	0.37	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FAM200A	221786	broad.mit.edu	36	7	98983233	98983233	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	98983233	98983233	C	T	SNP	C7orf38	NM_145111	human	genbank	54_36p	-1	validated	missense	c.734	p.R245Q	0.99	NULL	NULL	-	no_errors
ZNF655	79027	broad.mit.edu	36	7	99008893	99008893	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	99008893	99008893	A	G	SNP	ZNF655	NM_001083956	human	genbank	54_36p	1	reviewed	missense	c.1331	p.E444G	0.58	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
AZGP1	563	broad.mit.edu	36	7	99403866	99403866	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	99403866	99403866	C	G	SNP	AZGP1	NM_001185	human	genbank	54_36p	-1	validated	missense	c.461	p.W154S	0.97	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain"	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
ZKSCAN1	7586	broad.mit.edu	36	7	99468905	99468905	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	99468905	99468905	G	T	SNP	ZKSCAN1	NM_003439	human	genbank	54_36p	1	validated	missense	c.841	p.A281S	0.19	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZSCAN21	7589	broad.mit.edu	36	7	99492938	99492938	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	99492938	99492938	C	T	SNP	ZSCAN21	NM_145914	human	genbank	54_36p	1	validated	missense	c.373	p.R125W	0.76	"HMMPfam_SCAN,HMMSmart_SM00431"	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF3	7551	broad.mit.edu	36	7	99506938	99506938	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	99506938	99506938	C	T	SNP	ZNF3	NM_032924	human	genbank	54_36p	-1	validated	missense	c.1105	p.E369K	0.1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GAL3ST4	79690	broad.mit.edu	36	7	99595804	99595804	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	99595804	99595804	C	G	SNP	GAL3ST4	NM_024637	human	genbank	54_36p	-1	reviewed	missense	c.1144	p.E382Q	0.3	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
GAL3ST4	79690	broad.mit.edu	36	7	99596339	99596339	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	99596339	99596339	G	C	SNP	GAL3ST4	NM_024637	human	genbank	54_36p	-1	reviewed	missense	c.609	p.D203E	0.95	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
GAL3ST4	79690	broad.mit.edu	36	7	99596462	99596462	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	99596462	99596462	C	T	SNP	GAL3ST4	NM_024637	human	genbank	54_36p	-1	reviewed	silent	c.486	p.A162	0.03	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
STAG3	10734	broad.mit.edu	36	7	99624554	99624554	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	99624554	99624554	C	A	SNP	STAG3	NM_012447	human	genbank	54_36p	1	validated	missense	c.694	p.R232S	1	"superfamily_ARM repeat,HMMPfam_STAG"	"superfamily_ARM repeat,HMMPfam_STAG"	-	no_errors
AGFG2	3268	broad.mit.edu	36	7	99999427	99999451	+	Frame_Shift_Del	DEL	CTTCCCCCAGGCAGTGCCACCCACT	-	CTTCCCCCAGGCAGTGCCACCCACT	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CTTCCCCCAGGCAGTGCCACCCACT	CTTCCCCCAGGCAGTGCCACCCACT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	7	99999427	99999451	CTTCCCCCAGGCAGTGCCACCCACT	-	DEL	AGFG2	NM_006076	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1206_1230	p.F403fs	0.998:0.997:0.995:0.986:0.983:0.983:0.981:0.982:0.981:0.973:0.929:0.928:0.905:0.896:0.818:0.785:0.764:0.630:0.401:0.372:0.327:0.057:0.015:0.011:0.004	NULL	"HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap"	"(deletion:cds_exon[99999393,99999521])"	no_errors
MOSPD3	64598	broad.mit.edu	36	7	100050739	100050739	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100050739	100050739	C	G	SNP	MOSPD3	NM_001040097	human	genbank	54_36p	1	reviewed	silent	c.705	p.T235	1	NULL	"HMMPfam_Motile_Sperm,superfamily_PapD-like"	-	no_errors
TFR2	7036	broad.mit.edu	36	7	100056646	100056646	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	100056646	100056646	C	T	SNP	TFR2	NM_003227	human	genbank	54_36p	-1	reviewed	missense	c.2176	p.D726N	1	"superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer"	"superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer"	-	no_errors
ACTL6B	51412	broad.mit.edu	36	7	100081855	100081855	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100081855	100081855	C	A	SNP	ACTL6B	NM_016188	human	genbank	54_36p	-1	reviewed	nonsense	c.1153	p.E385*	1	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN,PatternScan_ACTINS_2"	-	no_errors
ZAN	7455	broad.mit.edu	36	7	100202212	100202212	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100202212	100202212	C	T	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	1	known	silent	c.4599	p.G1533	1	"HMMPfam_TIL_assoc,HMMSmart_SM00214,HMMSmart_SM00215,HMMSmart_SM00216"	###############################################################################################################################################################################################################################################################	-	no_errors
ZAN	7455	broad.mit.edu	36	7	100215053	100215053	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100215053	100215053	G	T	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	1	known	nonsense	c.6364	p.E2122*	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EPHB4	2050	broad.mit.edu	36	7	100259367	100259367	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	100259367	100259367	G	T	SNP	EPHB4	NM_004444	human	genbank	54_36p	-1	reviewed	silent	c.246	p.G82	0.02	"superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615"	###############################################################################################################################################################################################################################################################	-	no_errors
SRRT	51593	broad.mit.edu	36	7	100320536	100320536	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100320536	100320536	C	T	SNP	SRRT	NM_015908	human	genbank	54_36p	1	validated	silent	c.1098	p.S366	0.89	NULL	HMMPfam_ARS2	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100461809	100461809	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100461809	100461809	G	C	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.392	p.S131T	0.01	NULL	"superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100465211	100465211	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100465211	100465211	G	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.3794	p.G1265V	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100466962	100466962	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100466962	100466962	C	G	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.5545	p.P1849A	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100467963	100467963	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	100467963	100467963	A	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.6546	p.S2182	0.24	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100468359	100468359	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	100468359	100468359	T	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.6942	p.T2314	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100469055	100469055	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100469055	100469055	G	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.7638	p.V2546	0.01	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100469992	100469992	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100469992	100469992	G	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.8575	p.V2859M	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100470834	100470834	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100470834	100470834	T	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	silent	c.9417	p.S3139	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100471955	100471955	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100471955	100471955	G	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.10538	p.G3513V	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100471957	100471957	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100471957	100471957	G	T	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	nonsense	c.10540	p.E3514*	0.06	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100472480	100472480	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	100472480	100472480	C	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.11063	p.T3688K	0.02	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
MUC17	140453	broad.mit.edu	36	7	100473368	100473368	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100473368	100473368	C	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	1	provisional	missense	c.11951	p.S3984Y	0.98	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain"	-	no_errors
C7orf52	375607	broad.mit.edu	36	7	100602336	100602336	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	100602336	100602336	G	T	SNP	C7orf52	NM_198571	human	genbank	54_36p	-1	predicted	missense	c.854	p.P285H	1	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat)	-	no_errors
MOGAT3	346606	broad.mit.edu	36	7	100625957	100625957	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100625957	100625957	G	T	SNP	MOGAT3	NM_178176	human	genbank	54_36p	-1	provisional	missense	c.1016	p.T339N	0.95	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
MOGAT3	346606	broad.mit.edu	36	7	100628804	100628804	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	100628804	100628804	C	A	SNP	MOGAT3	NM_178176	human	genbank	54_36p	-1	provisional	missense	c.316	p.D106Y	0	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
MOGAT3	346606	broad.mit.edu	36	7	100630814	100630814	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	100630814	100630814	T	G	SNP	MOGAT3	NM_178176	human	genbank	54_36p	-1	provisional	missense	c.42	p.K14N	0	NULL	HMMPfam_DAGAT	-	no_errors
PLOD3	8985	broad.mit.edu	36	7	100636352	100636353	+	Missense_Mutation	DNP	GT	GT	TG	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	100636352	100636353	GT	TG	DNP	PLOD3	NM_001084	human	genbank	54_36p	-1	reviewed	missense	c.2147_2146	p.T716H	1.000:1.000	"HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy"	"HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE"	-	no_errors
PLOD3	8985	broad.mit.edu	36	7	100640600	100640609	+	Frame_Shift_Del	DEL	TGGGGCAGCT	-	TGGGGCAGCT	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	TGGGGCAGCT	TGGGGCAGCT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	7	100640600	100640609	TGGGGCAGCT	-	DEL	PLOD3	NM_001084	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1433_1424	p.E475fs	0.885:0.933:0.965:0.981:0.981:0.974:0.968:0.841:0.686:0.668	NULL	"HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE"	"(deletion:cds_exon[100640533,100640674])"	no_errors
PLOD3	8985	broad.mit.edu	36	7	100643184	100643184	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100643184	100643184	T	A	SNP	PLOD3	NM_001084	human	genbank	54_36p	-1	reviewed	missense	c.701	p.D234V	0.72	NULL	"PatternScan_LYS_HYDROXYLASE,HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702"	-	no_errors
EMID2	136227	broad.mit.edu	36	7	100793114	100793114	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	100793114	100793114	C	T	SNP	EMID2	ENST00000397927	human	ensembl	54_36p	1	known	silent	c.81	p.F27	0.9	NULL	"HMMPfam_EMI,HMMPfam_Collagen"	-	no_errors
EMID2	136227	broad.mit.edu	36	7	100983345	100983345	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	100983345	100983345	G	T	SNP	EMID2	ENST00000397927	human	ensembl	54_36p	1	known	missense	c.1048	p.G350W	0.92	HMMPfam_Collagen	"HMMPfam_Collagen,HMMPfam_EMI"	-	no_errors
CUX1	1523	broad.mit.edu	36	7	101346125	101346125	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	101346125	101346125	A	T	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	missense	c.41	p.D14V	1	NULL	"superfamily_lambda repressor-like DNA-binding domains,HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
CUX1	1523	broad.mit.edu	36	7	101628828	101628828	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	101628828	101628828	C	G	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	missense	c.1921	p.L641V	1	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1"	-	no_errors
CUX1	1523	broad.mit.edu	36	7	101631602	101631602	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	101631602	101631602	G	A	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	missense	c.2305	p.A769T	0	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1"	-	no_errors
CUX1	1523	broad.mit.edu	36	7	101657399	101657399	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	101657399	101657399	C	A	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	missense	c.3163	p.P1055T	1	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1"	-	no_errors
CUX1	1523	broad.mit.edu	36	7	101669478	101669478	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	101669478	101669478	C	A	SNP	CUX1	NM_181552	human	genbank	54_36p	1	reviewed	silent	c.3781	p.R1261	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1"	-	no_errors
ORAI2	80228	broad.mit.edu	36	7	101866527	101866527	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	101866527	101866527	C	T	SNP	ORAI2	NM_032831	human	genbank	54_36p	1	validated	missense	c.119	p.S40F	0.98	HMMPfam_DUF1650	HMMPfam_DUF1650	-	no_errors
LRWD1	222229	broad.mit.edu	36	7	101893502	101893515	+	Splice_Site	DEL	CGGTAAGTGGGAGC	-	CGGTAAGTGGGAGC	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	CGGTAAGTGGGAGC	CGGTAAGTGGGAGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	7	101893502	101893515	CGGTAAGTGGGAGC	-	DEL	LRWD1	NM_152892	human	genbank	54_36p	1	provisional	splice_site_del	c.314_315	p.T105fs	0.991:0.576	superfamily_SSF52058	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	"(deletion:cds_exon[101893269,101893503], intron[101893504,101893605])"	no_errors
PMPCB	9512	broad.mit.edu	36	7	102725215	102725215	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	102725215	102725215	C	G	SNP	PMPCB	NM_004279	human	genbank	54_36p	1	reviewed	missense	c.73	p.L25V	0	NULL	"superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C"	-	no_errors
PMPCB	9512	broad.mit.edu	36	7	102736641	102736641	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	102736641	102736641	G	C	SNP	PMPCB	NM_004279	human	genbank	54_36p	1	reviewed	missense	c.856	p.V286L	1	"HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd"	"PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16"	-	no_errors
RELN	5649	broad.mit.edu	36	7	102911473	102911473	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	102911473	102911473	G	C	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.10044	p.D3348E	1	NULL	"HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase"	-	no_errors
RELN	5649	broad.mit.edu	36	7	102966978	102966978	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	7	102966978	102966978	C	T	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	silent	c.6963	p.T2321	0.99	NULL	"HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196"	-	no_errors
RELN	5649	broad.mit.edu	36	7	103021451	103021451	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	103021451	103021451	C	T	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	missense	c.3826	p.A1276T	1	NULL	"HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196"	-	no_errors
RELN	5649	broad.mit.edu	36	7	103089058	103089058	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	103089058	103089058	C	T	SNP	RELN	NM_005045	human	genbank	54_36p	-1	reviewed	splice_site	c.1441+1	e12+1	1	-	-	-	no_errors
MLL5	55904	broad.mit.edu	36	7	104536839	104536839	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	104536839	104536839	C	G	SNP	MLL5	NM_018682	human	genbank	54_36p	1	reviewed	missense	c.3683	p.S1228C	0.45	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain"	-	no_errors
MLL5	55904	broad.mit.edu	36	7	104540210	104540210	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	104540210	104540210	C	G	SNP	MLL5	NM_018682	human	genbank	54_36p	1	reviewed	missense	c.4771	p.P1591A	1	NULL	"HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain"	-	no_errors
SRPK2	6733	broad.mit.edu	36	7	104570849	104570849	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	104570849	104570849	C	G	SNP	SRPK2	NM_182692	human	genbank	54_36p	-1	validated	missense	c.978	p.Q326H	0.93	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SRPK2	6733	broad.mit.edu	36	7	104595103	104595103	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	104595103	104595103	G	A	SNP	SRPK2	NM_182692	human	genbank	54_36p	-1	validated	silent	c.471	p.V157	0.95	"superfamily_Kinase_like,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
RINT1	60561	broad.mit.edu	36	7	104974656	104974656	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	104974656	104974656	T	G	SNP	RINT1	NM_021930	human	genbank	54_36p	1	validated	silent	c.579	p.S193	0.64	NULL	HMMPfam_RINT1_TIP1	-	no_errors
CDHR3	222256	broad.mit.edu	36	7	105442888	105442888	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	105442888	105442888	C	G	SNP	FLJ23834	NM_152750	human	genbank	54_36p	1	validated	nonsense	c.1320	p.Y440*	0.92	"superfamily_Cadherin-like,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	-	no_errors
PIK3CG	5294	broad.mit.edu	36	7	106300612	106300612	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	106300612	106300612	T	A	SNP	PIK3CG	NM_002649	human	genbank	54_36p	1	reviewed	missense	c.2280	p.S760R	0.99	superfamily_Protein kinase-like (PK-like)	###############################################################################################################################################################################################################################################################	-	no_errors
PRKAR2B	5577	broad.mit.edu	36	7	106574068	106574068	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	106574068	106574068	G	A	SNP	PRKAR2B	NM_002736	human	genbank	54_36p	1	reviewed	missense	c.667	p.E223K	1	"superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_2"	"superfamily_cAMP-dep_prot_kin_reg_I/II_a/b,HMMPfam_RIIa,HMMSmart_RIIa,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
COG5	10466	broad.mit.edu	36	7	106991578	106991578	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	106991578	106991578	G	T	SNP	COG5	NM_006348	human	genbank	54_36p	-1	validated	missense	c.93	p.N31K	1	NULL	HMMPfam_COG5	-	no_errors
COG5	10466	broad.mit.edu	36	7	106991606	106991606	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	7	106991606	106991606	G	-	DEL	COG5	NM_006348	human	genbank	54_36p	-1	validated	frame_shift_del	c.65	p.A22fs	0.51	NULL	HMMPfam_COG5	"(deletion:cds_exon[106991484,106991670])"	no_errors
CBLL1	79872	broad.mit.edu	36	7	107186218	107186218	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	107186218	107186218	C	T	SNP	CBLL1	NM_024814	human	genbank	54_36p	1	validated	nonsense	c.835	p.Q279*	1	NULL	"PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,HMMSmart_ZnF_C2H2"	-	no_errors
SLC26A3	1811	broad.mit.edu	36	7	107211005	107211005	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	107211005	107211005	C	G	SNP	SLC26A3	NM_000111	human	genbank	54_36p	-1	reviewed	missense	c.1000	p.E334Q	0	HMMPfam_Sulfate_transp	"PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
SLC26A3	1811	broad.mit.edu	36	7	107215046	107215046	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	107215046	107215046	A	C	SNP	SLC26A3	NM_000111	human	genbank	54_36p	-1	reviewed	missense	c.880	p.F294V	1	HMMPfam_Sulfate_transp	"HMMPfam_STAS,superfamily_STAS,HMMPfam_Sulfate_transp,PatternScan_SLC26A"	-	no_errors
LAMB1	3912	broad.mit.edu	36	7	107357276	107357276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	107357276	107357276	A	G	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.4562	p.I1521T	1	NULL	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_Prefoldin"	-	no_errors
LAMB1	3912	broad.mit.edu	36	7	107403508	107403508	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	107403508	107403508	A	G	SNP	LAMB1	NM_002291	human	genbank	54_36p	-1	reviewed	missense	c.1051	p.Y351H	0.35	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin"	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Prefoldin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin"	-	no_errors
LAMB4	22798	broad.mit.edu	36	7	107539614	107539614	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	107539614	107539614	C	T	SNP	LAMB4	NM_007356	human	genbank	54_36p	-1	validated	missense	c.206	p.C69Y	1	"HMMSmart_SM00136,HMMPfam_Laminin_N"	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2"	-	no_errors
NRCAM	4897	broad.mit.edu	36	7	107605735	107605735	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	107605735	107605735	C	T	SNP	NRCAM	NM_001037132	human	genbank	54_36p	-1	reviewed	silent	c.2910	p.L970	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
NRCAM	4897	broad.mit.edu	36	7	107612214	107612214	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	107612214	107612214	T	C	SNP	NRCAM	NM_001037132	human	genbank	54_36p	-1	reviewed	missense	c.2116	p.T706A	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
LRRN3	54674	broad.mit.edu	36	7	110550787	110550787	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	110550787	110550787	C	T	SNP	LRRN3	NM_001099658	human	genbank	54_36p	1	validated	silent	c.723	p.I241	1	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00013,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
DOCK4	9732	broad.mit.edu	36	7	111327807	111327807	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	111327807	111327807	C	G	SNP	DOCK4	NM_014705	human	genbank	54_36p	-1	reviewed	missense	c.1339	p.G447R	1	NULL	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
TMEM168	64418	broad.mit.edu	36	7	112194929	112194929	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	112194929	112194929	A	C	SNP	TMEM168	NM_022484	human	genbank	54_36p	-1	validated	silent	c.1653	p.P551	0.96	NULL	NULL	-	no_errors
C7orf60	154743	broad.mit.edu	36	7	112249203	112249203	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	112249203	112249203	C	T	SNP	C7orf60	NM_152556	human	genbank	54_36p	-1	validated	silent	c.1050	p.E350	1	NULL	NULL	-	no_errors
PPP1R3A	5506	broad.mit.edu	36	7	113305096	113305096	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	113305096	113305096	A	G	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.3287	p.I1096T	1	NULL	HMMPfam_CBM_21	-	no_errors
PPP1R3A	5506	broad.mit.edu	36	7	113305739	113305739	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	113305739	113305739	G	T	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.2644	p.L882I	0	NULL	HMMPfam_CBM_21	-	no_errors
PPP1R3A	5506	broad.mit.edu	36	7	113306644	113306644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	113306644	113306644	T	A	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.1739	p.D580V	0	NULL	HMMPfam_CBM_21	-	no_errors
PPP1R3A	5506	broad.mit.edu	36	7	113307084	113307084	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	113307084	113307084	G	C	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	silent	c.1299	p.G433	0	NULL	HMMPfam_CBM_21	-	no_errors
PPP1R3A	5506	broad.mit.edu	36	7	113307144	113307144	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	113307144	113307144	T	A	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	silent	c.1239	p.G413	0.21	NULL	HMMPfam_CBM_21	-	no_errors
PPP1R3A	5506	broad.mit.edu	36	7	113309380	113309380	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	113309380	113309380	C	A	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.916	p.D306Y	1	NULL	HMMPfam_CBM_21	-	no_errors
PPP1R3A	5506	broad.mit.edu	36	7	113346029	113346029	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	113346029	113346029	T	C	SNP	PPP1R3A	NM_002711	human	genbank	54_36p	-1	reviewed	missense	c.259	p.S87G	0	NULL	HMMPfam_CBM_21	-	no_errors
FOXP2	93986	broad.mit.edu	36	7	114057248	114057248	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	114057248	114057248	G	A	SNP	FOXP2	NM_148898	human	genbank	54_36p	1	reviewed	silent	c.624	p.Q208	1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
FOXP2	93986	broad.mit.edu	36	7	114071986	114071986	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	114071986	114071986	G	T	SNP	FOXP2	NM_148898	human	genbank	54_36p	1	reviewed	nonsense	c.1075	p.E359*	1	NULL	"HMMPfam_Fork_head,HMMSmart_FH,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_FORK_HEAD_2,superfamily_SSF46785"	-	no_errors
FOXP2	93986	broad.mit.edu	36	7	114089391	114089391	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	114089391	114089391	T	A	SNP	FOXP2	NM_148898	human	genbank	54_36p	1	reviewed	nonsense	c.1758	p.C586*	1	"HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785"	"HMMPfam_Fork_head,HMMSmart_FH,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_FORK_HEAD_2,superfamily_SSF46785"	-	no_errors
MET	4233	broad.mit.edu	36	7	116127036	116127036	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	116127036	116127036	A	G	SNP	MET	NM_000245	human	genbank	54_36p	1	reviewed	missense	c.662	p.E221G	1	"superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema"	###############################################################################################################################################################################################################################################################	-	no_errors
MET	4233	broad.mit.edu	36	7	116127088	116127088	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	116127088	116127088	A	T	SNP	MET	NM_000245	human	genbank	54_36p	1	reviewed	missense	c.714	p.L238F	0.48	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain"	###############################################################################################################################################################################################################################################################	-	no_errors
MET	4233	broad.mit.edu	36	7	116127172	116127172	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	116127172	116127172	G	C	SNP	MET	NM_000245	human	genbank	54_36p	1	reviewed	missense	c.798	p.R266S	0.53	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain"	###############################################################################################################################################################################################################################################################	-	no_errors
WNT2	7472	broad.mit.edu	36	7	116742442	116742442	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	116742442	116742442	G	A	SNP	WNT2	NM_003391	human	genbank	54_36p	-1	reviewed	silent	c.507	p.R169	0.98	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
CFTR	1080	broad.mit.edu	36	7	116969347	116969347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	116969347	116969347	C	G	SNP	CFTR	NM_000492	human	genbank	54_36p	1	reviewed	missense	c.1158	p.N386K	1	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
CTTNBP2	83992	broad.mit.edu	36	7	117173346	117173346	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	117173346	117173346	C	G	SNP	CTTNBP2	NM_033427	human	genbank	54_36p	-1	reviewed	missense	c.3392	p.S1131T	1	NULL	"HMMPfam_CortBP2,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
CTTNBP2	83992	broad.mit.edu	36	7	117219844	117219844	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	117219844	117219844	G	A	SNP	CTTNBP2	NM_033427	human	genbank	54_36p	-1	reviewed	silent	c.642	p.S214	0	HMMPfam_CortBP2	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_CortBP2"	-	no_errors
ANKRD7	56311	broad.mit.edu	36	7	117652161	117652167	+	Frame_Shift_Del	DEL	CCCGCAG	-	CCCGCAG	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	CCCGCAG	CCCGCAG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	117652161	117652167	CCCGCAG	-	DEL	ANKRD7	NM_001077708	human	genbank	54_36p	1	validated	frame_shift_del	c.41_47	p.S16fs	0.001:0.000:0.000:0.000:0.000:0.001:0.010	superfamily_ANK	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	"(deletion:cds_exon[117652121,117652299])"	no_errors
ANKRD7	56311	broad.mit.edu	36	7	117667234	117667234	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	117667234	117667234	A	C	SNP	ANKRD7	NM_001077708	human	genbank	54_36p	1	validated	missense	c.808	p.K270Q	0	NULL	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	-	no_errors
KCND2	3751	broad.mit.edu	36	7	119702624	119702624	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	119702624	119702624	G	T	SNP	KCND2	NM_012281	human	genbank	54_36p	1	reviewed	silent	c.702	p.T234	0.43	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KCND2	3751	broad.mit.edu	36	7	119702804	119702804	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	119702804	119702804	C	G	SNP	KCND2	NM_012281	human	genbank	54_36p	1	reviewed	silent	c.882	p.V294	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels"	-	no_errors
TSPAN12	23554	broad.mit.edu	36	7	120216158	120216158	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	120216158	120216158	C	T	SNP	TSPAN12	NM_012338	human	genbank	54_36p	-1	reviewed	silent	c.642	p.L214	1	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
ING3	54556	broad.mit.edu	36	7	120396395	120396395	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	120396395	120396395	G	C	SNP	ING3	NM_019071	human	genbank	54_36p	1	reviewed	missense	c.809	p.R270T	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
C7orf58	79974	broad.mit.edu	36	7	120554502	120554502	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	120554502	120554502	A	T	SNP	C7orf58	NM_024913	human	genbank	54_36p	1	validated	silent	c.1257	p.I419	0.12	NULL	NULL	-	no_errors
C7orf58	79974	broad.mit.edu	36	7	120664099	120664099	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	120664099	120664099	A	G	SNP	C7orf58	NM_024913	human	genbank	54_36p	1	validated	silent	c.2151	p.R717	0.06	NULL	NULL	-	no_errors
PTPRZ1	5803	broad.mit.edu	36	7	121437739	121437739	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	121437739	121437739	A	T	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	missense	c.1403	p.N468I	0.28	NULL	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRZ1	5803	broad.mit.edu	36	7	121461622	121461622	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	121461622	121461622	C	A	SNP	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	missense	c.5238	p.N1746K	1	"HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II"	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
PTPRZ1	5803	broad.mit.edu	36	7	121466124	121466124	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	121466124	121466124	G	-	DEL	PTPRZ1	NM_002851	human	genbank	54_36p	1	reviewed	frame_shift_del	c.5447	p.E1817fs	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	"(deletion:cds_exon[121466045,121466179])"	no_errors
AASS	10157	broad.mit.edu	36	7	121543936	121543936	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	121543936	121543936	C	G	SNP	AASS	NM_005763	human	genbank	54_36p	-1	reviewed	missense	c.881	p.R294P	1	HMMPfam_AlaDh_PNT_C	"superfamily_Formate/glycerate dehydrogenase catalytic domain-like,HMMPfam_AlaDh_PNT_N,HMMPfam_AlaDh_PNT_C,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Saccharop_dh,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain"	-	no_errors
FEZF1	389549	broad.mit.edu	36	7	121730470	121730470	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	121730470	121730470	C	T	SNP	FEZF1	NM_001024613	human	genbank	54_36p	-1	provisional	silent	c.921	p.T307	0.9	superfamily_SSF57667	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CADPS2	93664	broad.mit.edu	36	7	121843447	121843447	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	121843447	121843447	C	A	SNP	CADPS2	NM_017954	human	genbank	54_36p	-1	validated	missense	c.2484	p.M828I	1	HMMPfam_DUF1041	"HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041"	-	no_errors
RNF133	168433	broad.mit.edu	36	7	122125424	122125424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	122125424	122125424	C	A	SNP	RNF133	NM_139175	human	genbank	54_36p	-1	reviewed	missense	c.785	p.R262L	0.93	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	"PatternScan_ZF_RING_1,superfamily_SSF52025,HMMPfam_PA,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
TAS2R16	50833	broad.mit.edu	36	7	122422053	122422053	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	122422053	122422053	C	T	SNP	TAS2R16	NM_016945	human	genbank	54_36p	-1	reviewed	missense	c.872	p.C291Y	0	NULL	HMMPfam_TAS2R	-	no_errors
IQUB	154865	broad.mit.edu	36	7	122888709	122888709	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	122888709	122888709	G	A	SNP	IQUB	NM_178827	human	genbank	54_36p	-1	validated	nonsense	c.1945	p.Q649*	0.03	NULL	"HMMPfam_DUF2021,superfamily_Ubiquitin-like"	-	no_errors
IQUB	154865	broad.mit.edu	36	7	122939369	122939369	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	122939369	122939369	C	A	SNP	IQUB	NM_178827	human	genbank	54_36p	-1	validated	missense	c.262	p.V88F	0	NULL	"HMMPfam_DUF2021,superfamily_Ubiquitin-like"	-	no_errors
HYAL4	23553	broad.mit.edu	36	7	123295798	123295798	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	123295798	123295798	C	G	SNP	HYAL4	NM_012269	human	genbank	54_36p	1	reviewed	missense	c.235	p.L79V	0	"HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat"	"HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2"	-	no_errors
SPAM1	6677	broad.mit.edu	36	7	123380877	123380877	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	123380877	123380877	T	G	SNP	SPAM1	NM_003117	human	genbank	54_36p	1	reviewed	missense	c.17	p.F6C	0	NULL	"HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat"	-	no_errors
SPAM1	6677	broad.mit.edu	36	7	123381728	123381728	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	123381728	123381728	A	G	SNP	SPAM1	NM_003117	human	genbank	54_36p	1	reviewed	missense	c.868	p.K290E	0	"HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat"	"HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat"	-	no_errors
GPR37	2861	broad.mit.edu	36	7	124191244	124191244	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	124191244	124191244	C	G	SNP	GPR37	NM_005302	human	genbank	54_36p	-1	provisional	missense	c.1023	p.E341D	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GPR37	2861	broad.mit.edu	36	7	124191711	124191711	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	124191711	124191711	C	G	SNP	GPR37	NM_005302	human	genbank	54_36p	-1	provisional	missense	c.556	p.A186P	0.01	NULL	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
POT1	25913	broad.mit.edu	36	7	124298223	124298223	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	124298223	124298223	A	G	SNP	POT1	NM_015450	human	genbank	54_36p	-1	reviewed	missense	c.233	p.I78T	1	"superfamily_Nucleic acid-binding proteins,HMMPfam_Telo_bind"	"superfamily_Nucleic acid-binding proteins,HMMPfam_Telo_bind"	-	no_errors
GRM8	2918	broad.mit.edu	36	7	126533856	126533856	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	126533856	126533856	C	T	SNP	GRM8	NM_000845	human	genbank	54_36p	-1	reviewed	silent	c.657	p.S219	0.93	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
GCC1	79571	broad.mit.edu	36	7	127009804	127009804	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	127009804	127009804	C	A	SNP	GCC1	NM_024523	human	genbank	54_36p	-1	reviewed	missense	c.1828	p.A610S	0.6	NULL	"HMMPfam_GRIP,HMMSmart_SM00755"	-	no_errors
ARF5	381	broad.mit.edu	36	7	127017389	127017389	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	127017389	127017389	G	T	SNP	ARF5	NM_001662	human	genbank	54_36p	1	reviewed	nonsense	c.292	p.E98*	1	"HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	"HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,PatternScan_ARF"	-	no_errors
RBM28	55131	broad.mit.edu	36	7	127758150	127758150	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	127758150	127758150	A	C	SNP	RBM28	NM_018077	human	genbank	54_36p	-1	validated	missense	c.1087	p.Y363D	1	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	"HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1"	-	no_errors
IMPDH1	3614	broad.mit.edu	36	7	127825757	127825757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	127825757	127825757	C	T	SNP	IMPDH1	NM_000883	human	genbank	54_36p	-1	reviewed	missense	c.1021	p.D341N	1	"superfamily_SSF51412,HMMPfam_IMPDH"	"superfamily_SSF51412,HMMPfam_IMPDH,superfamily_SSF54631,HMMPfam_CBS,HMMSmart_CBS,PatternScan_IMP_DH_GMP_RED"	-	no_errors
CCDC136	64753	broad.mit.edu	36	7	128233162	128233162	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	128233162	128233162	C	T	SNP	CCDC136	NM_022742	human	genbank	54_36p	1	validated	missense	c.1060	p.R354W	0.87	NULL	"superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
CCDC136	64753	broad.mit.edu	36	7	128234679	128234679	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	128234679	128234679	G	A	SNP	CCDC136	NM_022742	human	genbank	54_36p	1	validated	silent	c.1449	p.E483	0.7	superfamily_Prefoldin	"superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
CCDC136	64753	broad.mit.edu	36	7	128240009	128240009	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	128240009	128240009	A	T	SNP	CCDC136	NM_022742	human	genbank	54_36p	1	validated	missense	c.2553	p.E851D	0	superfamily_Spectrin repeat	"superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
FLNC	2318	broad.mit.edu	36	7	128272219	128272219	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	128272219	128272219	C	T	SNP	FLNC	NM_001458	human	genbank	54_36p	1	reviewed	missense	c.3464	p.P1155L	1	"superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557"	-	no_errors
TSPAN33	340348	broad.mit.edu	36	7	128593914	128593914	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	128593914	128593914	C	G	SNP	TSPAN33	NM_178562	human	genbank	54_36p	1	provisional	missense	c.519	p.C173W	0.99	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	-	no_errors
AHCYL2	23382	broad.mit.edu	36	7	128827403	128827403	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	128827403	128827403	A	G	SNP	AHCYL2	NM_015328	human	genbank	54_36p	1	validated	missense	c.860	p.D287G	1	"superfamily_SSF52283,HMMPfam_AdoHcyase"	"superfamily_SSF52283,HMMPfam_AdoHcyase,PatternScan_ADOHCYASE_1,superfamily_NAD(P)-bd,HMMPfam_AdoHcyase_NAD,PatternScan_ADOHCYASE_2"	-	no_errors
TMEM209	84928	broad.mit.edu	36	7	129619850	129619850	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	129619850	129619850	C	T	SNP	TMEM209	NM_032842	human	genbank	54_36p	-1	validated	missense	c.623	p.G208E	1	HMMPfam_CytochromB561_N	HMMPfam_CytochromB561_N	-	no_errors
C7orf45	136263	broad.mit.edu	36	7	129643285	129643285	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	129643285	129643285	A	G	SNP	C7orf45	NM_145268	human	genbank	54_36p	1	validated	silent	c.474	p.E158	0.13	NULL	NULL	-	no_errors
CPA2	1358	broad.mit.edu	36	7	129716757	129716757	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	129716757	129716757	C	G	SNP	CPA2	NM_001869	human	genbank	54_36p	1	reviewed	silent	c.1188	p.P396	1	"superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14"	"superfamily_Prot_inh_propept,HMMPfam_Propep_M14,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
CPA4	51200	broad.mit.edu	36	7	129737955	129737955	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	129737955	129737955	C	A	SNP	CPA4	NM_016352	human	genbank	54_36p	1	reviewed	missense	c.886	p.Q296K	0.01	"superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
CPA5	93979	broad.mit.edu	36	7	129794613	129794613	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	129794613	129794613	C	T	SNP	CPA5	NM_080385	human	genbank	54_36p	1	validated	nonsense	c.1003	p.R335*	1	"superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
CPA1	1357	broad.mit.edu	36	7	129810805	129810805	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	129810805	129810805	C	T	SNP	CPA1	NM_001868	human	genbank	54_36p	1	reviewed	silent	c.630	p.L210	0.04	"superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14"	"superfamily_Prot_inh_propept,HMMPfam_Propep_M14,superfamily_SSF53187,HMMSmart_Zn_pept,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
MKLN1	4289	broad.mit.edu	36	7	130806223	130806223	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	130806223	130806223	G	C	SNP	MKLN1	NM_013255	human	genbank	54_36p	1	validated	missense	c.2011	p.D671H	1	NULL	"superfamily_Galactose-binding domain-like,HMMPfam_Muskelin_N,HMMSmart_SM00667,HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain"	-	no_errors
PLXNA4	91584	broad.mit.edu	36	7	131476006	131476006	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	131476006	131476006	G	A	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.5330	p.T1777I	1	"HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP"	-	no_errors
PLXNA4	91584	broad.mit.edu	36	7	131476037	131476037	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	131476037	131476037	T	C	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.5299	p.T1767A	1	"superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl"	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat"	-	no_errors
PLXNA4	91584	broad.mit.edu	36	7	131843728	131843728	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	131843728	131843728	C	A	SNP	PLXNA4	NM_020911	human	genbank	54_36p	-1	validated	missense	c.265	p.D89Y	0.98	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain"	"HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat"	-	no_errors
CHCHD3	54927	broad.mit.edu	36	7	132359853	132359853	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	132359853	132359853	G	C	SNP	CHCHD3	NM_017812	human	genbank	54_36p	-1	provisional	missense	c.244	p.Q82E	0.95	HMMPfam_DUF737	"HMMPfam_DUF737,HMMPfam_CHCH"	-	no_errors
LRGUK	136332	broad.mit.edu	36	7	133509892	133509892	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	133509892	133509892	C	T	SNP	LRGUK	NM_144648	human	genbank	54_36p	1	provisional	silent	c.984	p.I328	0.97	superfamily_SSF52058	"PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMSmart_GuKc,HMMPfam_Guanylate_kin"	-	no_errors
AKR1B1	231	broad.mit.edu	36	7	133786091	133786091	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	133786091	133786091	G	A	SNP	AKR1B1	NM_001628	human	genbank	54_36p	-1	reviewed	missense	c.338	p.P113L	1	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red"	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
AKR1B15	441282	broad.mit.edu	36	7	133910733	133910733	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	133910733	133910733	G	A	SNP	AKR1B10L	NM_001080538	human	genbank	54_36p	1	provisional	missense	c.451	p.E151K	0.99	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_2"	"superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_2"	-	no_errors
WDR91	29062	broad.mit.edu	36	7	134531481	134531481	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	134531481	134531481	C	G	SNP	WDR91	NM_014149	human	genbank	54_36p	-1	validated	missense	c.1199	p.G400A	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
NUP205	23165	broad.mit.edu	36	7	134920120	134920120	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	134920120	134920120	C	G	SNP	NUP205	NM_015135	human	genbank	54_36p	1	validated	missense	c.1043	p.A348G	1	NULL	NULL	-	no_errors
NUP205	23165	broad.mit.edu	36	7	134938258	134938258	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	134938258	134938258	C	T	SNP	NUP205	NM_015135	human	genbank	54_36p	1	validated	missense	c.2678	p.A893V	1	NULL	NULL	-	no_errors
NUP205	23165	broad.mit.edu	36	7	134952008	134952008	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	134952008	134952008	A	T	SNP	NUP205	NM_015135	human	genbank	54_36p	1	validated	missense	c.3526	p.T1176S	0.84	NULL	NULL	-	no_errors
FAM180A	389558	broad.mit.edu	36	7	135069406	135069406	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	135069406	135069406	C	T	SNP	FAM180A	NM_205855	human	genbank	54_36p	-1	predicted	missense	c.379	p.V127M	0.98	NULL	NULL	-	no_errors
FAM180A	389558	broad.mit.edu	36	7	135069408	135069408	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	135069408	135069408	G	C	SNP	FAM180A	NM_205855	human	genbank	54_36p	-1	predicted	missense	c.377	p.T126R	1	NULL	NULL	-	no_errors
DGKI	9162	broad.mit.edu	36	7	136922464	136922464	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	136922464	136922464	C	A	SNP	DGKI	NM_004717	human	genbank	54_36p	-1	reviewed	silent	c.1344	p.L448	1	"HMMPfam_DAGK_cat,HMMSmart_DAGKc"	"PatternScan_ZF_DAG_PE_1,HMMSmart_C1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_DAGK_acc,HMMSmart_DAGKa,superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	-	no_errors
DGKI	9162	broad.mit.edu	36	7	136955144	136955144	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	136955144	136955144	G	A	SNP	DGKI	NM_004717	human	genbank	54_36p	-1	reviewed	missense	c.959	p.P320L	1	NULL	"HMMPfam_DAGK_acc,HMMSmart_DAGKa,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1"	-	no_errors
CREB3L2	64764	broad.mit.edu	36	7	137220324	137220324	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	137220324	137220324	C	T	SNP	CREB3L2	NM_194071	human	genbank	54_36p	-1	validated	silent	c.1227	p.L409	1	NULL	"superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
AKR1D1	6718	broad.mit.edu	36	7	137411867	137411867	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	137411867	137411867	C	T	SNP	AKR1D1	NM_005989	human	genbank	54_36p	1	validated	silent	c.63	p.I21	0.84	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red"	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
SVOPL	136306	broad.mit.edu	36	7	137961258	137961258	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	137961258	137961258	G	C	SNP	SVOPL	NM_174959	human	genbank	54_36p	-1	validated	missense	c.803	p.A268G	1	superfamily_MFS_gen_substrate_transporter	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	-	no_errors
KIAA1549	57670	broad.mit.edu	36	7	138253089	138253089	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	7	138253089	138253089	C	T	SNP	KIAA1549	NM_020910	human	genbank	54_36p	-1	validated	missense	c.1673	p.R558H	0	NULL	PatternScan_HTH_LUXR_1	-	no_errors
TTC26	79989	broad.mit.edu	36	7	138482481	138482481	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	138482481	138482481	C	T	SNP	TTC26	NM_024926	human	genbank	54_36p	1	validated	silent	c.450	p.V150	1	superfamily_SSF48452	superfamily_SSF48452	-	no_errors
PARP12	64761	broad.mit.edu	36	7	139372502	139372502	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	139372502	139372502	G	A	SNP	PARP12	NM_022750	human	genbank	54_36p	-1	provisional	missense	c.1744	p.R582W	1	"superfamily_ADP-ribosylation,HMMPfam_PARP"	"HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
PARP12	64761	broad.mit.edu	36	7	139373616	139373616	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	139373616	139373616	G	A	SNP	PARP12	NM_022750	human	genbank	54_36p	-1	provisional	silent	c.1557	p.R519	0.71	"HMMPfam_PARP,superfamily_ADP-ribosylation"	"HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMPfam_PARP,superfamily_ADP-ribosylation,superfamily_CCCH zinc finger"	-	no_errors
PARP12	64761	broad.mit.edu	36	7	139393278	139393278	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	139393278	139393278	T	A	SNP	PARP12	NM_022750	human	genbank	54_36p	-1	provisional	splice_site	c.863-2	e5-2	1	-	-	-	no_errors
SLC37A3	84255	broad.mit.edu	36	7	139694985	139694987	+	In_Frame_Del	DEL	AGA	-	AGA	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	AGA	AGA	-	-	AGA	AGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	7	139694985	139694987	AGA	-	DEL	SLC37A3	NM_207113	human	genbank	54_36p	-1	validated	in_frame_del	c.934_932	p.F311in_frame_del	1.000:1.000:1.000	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"(deletion:cds_exon[139694895,139695036])"	no_errors
DENND2A	27147	broad.mit.edu	36	7	139948560	139948560	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	139948560	139948560	C	G	SNP	DENND2A	NM_015689	human	genbank	54_36p	-1	validated	missense	c.107	p.R36T	0	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800"	-	no_errors
NDUFB2	4708	broad.mit.edu	36	7	140051180	140051180	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	140051180	140051180	A	G	SNP	NDUFB2	NM_004546	human	genbank	54_36p	1	reviewed	missense	c.295	p.I99V	0.98	NULL	NULL	-	no_errors
BRAF	673	broad.mit.edu	36	7	140099662	140099662	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	140099662	140099662	T	C	SNP	BRAF	NM_004333	human	genbank	54_36p	-1	reviewed	missense	c.1742	p.N581S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	###############################################################################################################################################################################################################################################################	-	no_errors
AGK	55750	broad.mit.edu	36	7	140961779	140961779	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	140961779	140961779	G	A	SNP	AGK	NM_018238	human	genbank	54_36p	1	validated	missense	c.463	p.G155R	1	"HMMPfam_DAGK_cat,HMMSmart_SM00046"	"HMMPfam_DAGK_cat,HMMSmart_SM00046"	-	no_errors
KIAA1147	57189	broad.mit.edu	36	7	141010468	141010468	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	141010468	141010468	T	C	SNP	KIAA1147	NM_001080392	human	genbank	54_36p	-1	predicted	missense	c.1145	p.N382S	0.98	HMMPfam_DUF2347	HMMPfam_DUF2347	-	no_errors
MGAM	8972	broad.mit.edu	36	7	141368668	141368668	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	141368668	141368668	A	G	SNP	MGAM	NM_004668	human	genbank	54_36p	1	reviewed	missense	c.842	p.K281R	1	NULL	"HMMPfam_Trefoil,HMMPfam_Glyco_hydro_31"	-	no_errors
MGAM	8972	broad.mit.edu	36	7	141378037	141378037	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	7	141378037	141378037	A	T	SNP	MGAM	NM_004668	human	genbank	54_36p	1	reviewed	missense	c.1559	p.Q520L	0.07	HMMPfam_Glyco_hydro_31	"HMMPfam_Glyco_hydro_31,HMMPfam_Trefoil"	-	no_errors
MGAM	8972	broad.mit.edu	36	7	141410781	141410781	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	7	141410781	141410781	C	A	SNP	MGAM	NM_004668	human	genbank	54_36p	1	reviewed	missense	c.4474	p.P1492T	1	HMMPfam_Glyco_hydro_31	"HMMPfam_Glyco_hydro_31,HMMPfam_Trefoil"	-	no_errors
EPHB6	2051	broad.mit.edu	36	7	142271518	142271518	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	142271518	142271518	G	T	SNP	EPHB6	NM_004445	human	genbank	54_36p	1	reviewed	missense	c.63	p.L21F	0.98	"superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615"	###############################################################################################################################################################################################################################################################	-	no_errors
TRPV6	55503	broad.mit.edu	36	7	142279840	142279840	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	142279840	142279840	G	A	SNP	TRPV6	NM_018646	human	genbank	54_36p	-1	validated	silent	c.1920	p.N640	0.03	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
TRPV5	56302	broad.mit.edu	36	7	142332804	142332804	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	142332804	142332804	C	A	SNP	TRPV5	NM_019841	human	genbank	54_36p	-1	reviewed	missense	c.1064	p.R355L	0.1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
TRPV5	56302	broad.mit.edu	36	7	142335310	142335310	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	142335310	142335310	G	T	SNP	TRPV5	NM_019841	human	genbank	54_36p	-1	reviewed	silent	c.904	p.R302	0.89	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans"	-	no_errors
TRPV5	56302	broad.mit.edu	36	7	142336330	142336330	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	142336330	142336330	G	A	SNP	TRPV5	NM_019841	human	genbank	54_36p	-1	reviewed	silent	c.495	p.H165	0.97	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans"	-	no_errors
TAS2R40	259286	broad.mit.edu	36	7	142629836	142629836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	142629836	142629836	G	A	SNP	TAS2R40	NM_176882	human	genbank	54_36p	1	provisional	silent	c.543	p.T181	0	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
TMEM139	135932	broad.mit.edu	36	7	142693871	142693871	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	142693871	142693871	C	G	SNP	TMEM139	NM_153345	human	genbank	54_36p	1	provisional	missense	c.478	p.P160A	0	NULL	NULL	-	no_errors
CLCN1	1180	broad.mit.edu	36	7	142723566	142723566	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	142723566	142723566	C	T	SNP	CLCN1	NM_000083	human	genbank	54_36p	1	reviewed	missense	c.139	p.R47W	0.05	NULL	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMPfam_CBS"	-	no_errors
CLCN1	1180	broad.mit.edu	36	7	142729031	142729031	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	142729031	142729031	G	T	SNP	CLCN1	NM_000083	human	genbank	54_36p	1	reviewed	missense	c.664	p.G222C	1	"HMMPfam_Voltage_CLC,superfamily_Clc chloride channel"	"HMMPfam_CBS,HMMPfam_Voltage_CLC,superfamily_Clc chloride channel,superfamily_CBS-domain"	-	no_errors
FAM131B	9715	broad.mit.edu	36	7	142766149	142766149	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	142766149	142766149	C	T	SNP	FAM131B	NM_001031690	human	genbank	54_36p	-1	validated	missense	c.275	p.G92E	1	NULL	NULL	-	no_errors
EPHA1	2041	broad.mit.edu	36	7	142804789	142804789	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	142804789	142804789	C	T	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	missense	c.1699	p.V567I	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EPHA1	2041	broad.mit.edu	36	7	142808686	142808686	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	142808686	142808686	G	A	SNP	EPHA1	NM_005232	human	genbank	54_36p	-1	reviewed	silent	c.285	p.V95	0.46	"HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
OR2F2	135948	broad.mit.edu	36	7	143263269	143263269	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	143263269	143263269	A	G	SNP	OR2F2	NM_001004685	human	genbank	54_36p	1	provisional	missense	c.11	p.D4G	0.04	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2F2	135948	broad.mit.edu	36	7	143263352	143263352	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	7	143263352	143263352	T	A	SNP	OR2F2	NM_001004685	human	genbank	54_36p	1	provisional	missense	c.94	p.L32M	0.1	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR6B1	135946	broad.mit.edu	36	7	143332853	143332853	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	143332853	143332853	C	T	SNP	OR6B1	NM_001005281	human	genbank	54_36p	1	provisional	silent	c.831	p.A277	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2A5	393046	broad.mit.edu	36	7	143378970	143378970	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	143378970	143378970	C	T	SNP	OR2A5	NM_012365	human	genbank	54_36p	1	provisional	silent	c.543	p.I181	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2A5	393046	broad.mit.edu	36	7	143379018	143379018	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	143379018	143379018	G	A	SNP	OR2A5	NM_012365	human	genbank	54_36p	1	provisional	silent	c.591	p.V197	0	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR2A12	346525	broad.mit.edu	36	7	143423164	143423164	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	143423164	143423164	G	T	SNP	OR2A12	NM_001004135	human	genbank	54_36p	1	provisional	missense	c.31	p.V11F	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2A7	401427	broad.mit.edu	36	7	143586931	143586931	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	143586931	143586931	A	G	SNP	OR2A7	NM_001005328	human	genbank	54_36p	-1	provisional	missense	c.724	p.S242P	0.3	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
CNTNAP2	26047	broad.mit.edu	36	7	146460352	146460352	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	146460352	146460352	G	A	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.1166	p.R389Q	0.93	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP2	26047	broad.mit.edu	36	7	146967232	146967232	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	146967232	146967232	G	A	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.1999	p.A667T	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP2	26047	broad.mit.edu	36	7	147231700	147231700	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	147231700	147231700	A	T	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.2209	p.T737S	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP2	26047	broad.mit.edu	36	7	147500486	147500486	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	147500486	147500486	G	T	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.2993	p.G998V	1	"HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP2	26047	broad.mit.edu	36	7	147545369	147545369	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	147545369	147545369	G	A	SNP	CNTNAP2	NM_014141	human	genbank	54_36p	1	reviewed	missense	c.3067	p.A1023T	0	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
PDIA4	9601	broad.mit.edu	36	7	148347173	148347173	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	148347173	148347173	T	C	SNP	PDIA4	NM_004911	human	genbank	54_36p	-1	validated	missense	c.319	p.I107V	0	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1"	-	no_errors
ZNF425	155054	broad.mit.edu	36	7	148432494	148432494	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	148432494	148432494	T	G	SNP	ZNF425	NM_001001661	human	genbank	54_36p	-1	provisional	missense	c.1402	p.K468Q	0.05	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF212	7988	broad.mit.edu	36	7	148582403	148582403	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	148582403	148582403	G	A	SNP	ZNF212	NM_012256	human	genbank	54_36p	1	reviewed	silent	c.1452	p.L484	0.04	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF777	27153	broad.mit.edu	36	7	148760491	148760491	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	148760491	148760491	C	A	SNP	ZNF777	NM_015694	human	genbank	54_36p	-1	validated	missense	c.1805	p.C602F	0	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF746	155061	broad.mit.edu	36	7	148803306	148803306	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	148803306	148803306	C	G	SNP	ZNF746	NM_152557	human	genbank	54_36p	-1	provisional	missense	c.1037	p.R346P	0.31	NULL	"HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF746	155061	broad.mit.edu	36	7	148805656	148805656	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	148805656	148805656	C	A	SNP	ZNF746	NM_152557	human	genbank	54_36p	-1	provisional	missense	c.644	p.G215V	0.98	NULL	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF746	155061	broad.mit.edu	36	7	148822461	148822461	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	148822461	148822461	G	A	SNP	ZNF746	NM_152557	human	genbank	54_36p	-1	provisional	missense	c.91	p.R31C	0.71	NULL	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
KRBA1	84626	broad.mit.edu	36	7	149049527	149049527	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	149049527	149049527	G	C	SNP	KRBA1	ENST00000255992	human	ensembl	54_36p	1	known	missense	c.434	p.G145A	0	NULL	NULL	-	no_errors
SSPO	23145	broad.mit.edu	36	7	149106036	149106036	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	149106036	149106036	G	A	SNP	SSPO	NM_198455	human	genbank	54_36p	1	provisional	silent	c.804	p.L268	0.94	"HMMSmart_SM00216,HMMPfam_VWD"	###############################################################################################################################################################################################################################################################	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SSPO	23145	broad.mit.edu	36	7	149134850	149134853	+	Frame_Shift_Del	DEL	GATA	-	GATA	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	GATA	GATA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	7	149134850	149134853	GATA	-	DEL	SSPO	NM_198455	human	genbank	54_36p	1	provisional	frame_shift_del	c.8748_8751	p.D2918fs	0.551:0.642:0.734:0.827	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[149134756,149135012])"	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SSPO	23145	broad.mit.edu	36	7	149159224	149159225	+	Missense_Mutation	DNP	GG	GG	TA	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	149159224	149159225	GG	TA	DNP	SSPO	NM_198455	human	genbank	54_36p	1	provisional	missense	c.15225_15226	p.D5076N	0.998:1.000	NULL	###############################################################################################################################################################################################################################################################	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C7orf29	113763	broad.mit.edu	36	7	149659030	149659030	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	149659030	149659030	G	C	SNP	C7orf29	NM_138434	human	genbank	54_36p	1	validated	missense	c.604	p.E202Q	0.57	NULL	NULL	-	no_errors
REPIN1	29803	broad.mit.edu	36	7	149699714	149699714	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	149699714	149699714	G	A	SNP	REPIN1	NM_001099695	human	genbank	54_36p	1	validated	missense	c.622	p.E208K	0.05	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GIMAP4	55303	broad.mit.edu	36	7	149900208	149900208	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	149900208	149900208	C	T	SNP	GIMAP4	NM_018326	human	genbank	54_36p	1	reviewed	silent	c.117	p.T39	0.76	"superfamily_SSF52540,HMMPfam_AIG1"	"superfamily_SSF52540,HMMPfam_AIG1"	-	no_errors
GIMAP1	170575	broad.mit.edu	36	7	150048090	150048090	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	150048090	150048090	C	A	SNP	GIMAP1	NM_130759	human	genbank	54_36p	1	reviewed	missense	c.65	p.S22Y	0	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AIG1"	-	no_errors
TMEM176B	28959	broad.mit.edu	36	7	150124586	150124586	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	150124586	150124586	G	A	SNP	TMEM176B	NM_001101311	human	genbank	54_36p	-1	validated	missense	c.5	p.T2M	0	NULL	HMMPfam_LR8	-	no_errors
TMEM176A	55365	broad.mit.edu	36	7	150130293	150130293	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	150130293	150130293	C	T	SNP	TMEM176A	NM_018487	human	genbank	54_36p	1	validated	missense	c.232	p.R78C	0	HMMPfam_LR8	HMMPfam_LR8	-	no_errors
NOS3	4846	broad.mit.edu	36	7	150329335	150329335	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150329335	150329335	G	A	SNP	NOS3	NM_000603	human	genbank	54_36p	1	validated	silent	c.1317	p.G439	1	"superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase"	###############################################################################################################################################################################################################################################################	-	no_errors
NOS3	4846	broad.mit.edu	36	7	150338933	150338933	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150338933	150338933	C	G	SNP	NOS3	NM_000603	human	genbank	54_36p	1	validated	silent	c.2910	p.P970	0.99	"HMMPfam_FAD_binding_1,superfamily_Riboflavin synthase domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ATG9B	285973	broad.mit.edu	36	7	150345191	150345191	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150345191	150345191	C	A	SNP	ATG9B	NM_173681	human	genbank	54_36p	-1	validated	missense	c.2154	p.W718C	1	NULL	HMMPfam_APG9	-	no_errors
ATG9B	285973	broad.mit.edu	36	7	150349221	150349221	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	150349221	150349221	A	T	SNP	ATG9B	NM_173681	human	genbank	54_36p	-1	validated	missense	c.950	p.L317Q	1	NULL	HMMPfam_APG9	-	no_errors
ABCB8	11194	broad.mit.edu	36	7	150361864	150361864	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150361864	150361864	G	A	SNP	ABCB8	NM_007188	human	genbank	54_36p	1	reviewed	missense	c.335	p.G112E	0.02	superfamily_ABC_TM_1	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCB8	11194	broad.mit.edu	36	7	150372194	150372194	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150372194	150372194	C	A	SNP	ABCB8	NM_007188	human	genbank	54_36p	1	reviewed	missense	c.1969	p.R657S	0.01	"HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
ACCN3	9311	broad.mit.edu	36	7	150378590	150378590	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	150378590	150378590	C	T	SNP	ACCN3	NM_020321	human	genbank	54_36p	1	reviewed	missense	c.775	p.P259S	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
ABCF2	10061	broad.mit.edu	36	7	150543644	150543644	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150543644	150543644	G	C	SNP	ABCF2	NM_005692	human	genbank	54_36p	-1	reviewed	nonsense	c.1509	p.Y503*	0.99	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran"	"superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
CHPF2	54480	broad.mit.edu	36	7	150562189	150562189	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150562189	150562189	G	C	SNP	CSGLCA-T	NM_019015	human	genbank	54_36p	1	provisional	missense	c.159	p.Q53H	0.84	NULL	HMMPfam_CHGN	-	no_errors
CHPF2	54480	broad.mit.edu	36	7	150564433	150564433	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	150564433	150564433	C	A	SNP	CSGLCA-T	NM_019015	human	genbank	54_36p	1	provisional	missense	c.835	p.Q279K	1	HMMPfam_CHGN	HMMPfam_CHGN	-	no_errors
CHPF2	54480	broad.mit.edu	36	7	150565627	150565627	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150565627	150565627	C	T	SNP	CSGLCA-T	NM_019015	human	genbank	54_36p	1	provisional	missense	c.1246	p.R416W	0.96	HMMPfam_CHGN	HMMPfam_CHGN	-	no_errors
CHPF2	54480	broad.mit.edu	36	7	150565781	150565781	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	150565781	150565781	G	C	SNP	CSGLCA-T	NM_019015	human	genbank	54_36p	1	provisional	missense	c.1400	p.S467T	1	HMMPfam_CHGN	HMMPfam_CHGN	-	no_errors
MLL3	58508	broad.mit.edu	36	7	151509577	151509577	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	7	151509577	151509577	G	C	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.6301	p.P2101A	0.93	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL3	58508	broad.mit.edu	36	7	151510449	151510449	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	151510449	151510449	A	C	SNP	MLL3	NM_170606	human	genbank	54_36p	-1	reviewed	missense	c.5429	p.L1810W	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ACTR3B	57180	broad.mit.edu	36	7	152182520	152182520	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	152182520	152182520	G	T	SNP	ACTR3B	NM_020445	human	genbank	54_36p	1	validated	missense	c.1206	p.E402D	0.98	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE"	-	no_errors
PAXIP1	22976	broad.mit.edu	36	7	154391719	154391719	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	154391719	154391719	A	C	SNP	PAXIP1	NM_007349	human	genbank	54_36p	-1	reviewed	missense	c.1125	p.N375K	0.88	NULL	"superfamily_BRCT domain,HMMPfam_BRCT,HMMSmart_SM00292"	-	no_errors
CNPY1	285888	broad.mit.edu	36	7	154992530	154992530	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	7	154992530	154992530	G	A	SNP	CNPY1	NM_001103176	human	genbank	54_36p	-1	validated	missense	c.187	p.L63F	1	NULL	NULL	-	no_errors
DNAJB6	10049	broad.mit.edu	36	7	156871083	156871083	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	156871083	156871083	G	A	SNP	DNAJB6	NM_005494	human	genbank	54_36p	1	reviewed	silent	c.708	p.L236	0.88	NULL	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1"	-	no_errors
PTPRN2	5799	broad.mit.edu	36	7	157566802	157566802	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	157566802	157566802	C	T	SNP	PTPRN2	NM_002847	human	genbank	54_36p	-1	reviewed	missense	c.1672	p.V558M	0.81	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
NCAPG2	54892	broad.mit.edu	36	7	158168810	158168810	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	158168810	158168810	G	A	SNP	NCAPG2	NM_017760	human	genbank	54_36p	-1	validated	silent	c.867	p.F289	1	NULL	superfamily_ARM repeat	-	no_errors
WDR60	55112	broad.mit.edu	36	7	158365361	158365361	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	7	158365361	158365361	T	G	SNP	WDR60	NM_018051	human	genbank	54_36p	1	validated	missense	c.799	p.F267V	0	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
ARHGEF10	9639	broad.mit.edu	36	8	1795619	1795619	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	1795619	1795619	G	A	SNP	ARHGEF10	NM_014629	human	genbank	54_36p	1	reviewed	missense	c.343	p.E115K	0.04	NULL	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,superfamily_WD40_like,PatternScan_THIOL_PROTEASE_HIS"	-	no_errors
MYOM2	9172	broad.mit.edu	36	8	1993181	1993181	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	1993181	1993181	T	G	SNP	MYOM2	NM_003970	human	genbank	54_36p	1	validated	missense	c.436	p.F146V	0	superfamily_SSF48726	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_ig,HMMSmart_IGc2"	-	no_errors
MYOM2	9172	broad.mit.edu	36	8	2034099	2034099	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	2034099	2034099	C	T	SNP	MYOM2	NM_003970	human	genbank	54_36p	1	validated	silent	c.2319	p.D773	0.23	"HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
MYOM2	9172	broad.mit.edu	36	8	2051254	2051254	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	2051254	2051254	T	A	SNP	MYOM2	NM_003970	human	genbank	54_36p	1	validated	silent	c.3276	p.I1092	1	NULL	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
MYOM2	9172	broad.mit.edu	36	8	2076203	2076203	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	2076203	2076203	C	A	SNP	MYOM2	NM_003970	human	genbank	54_36p	1	validated	missense	c.3951	p.D1317E	1	superfamily_SSF48726	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
CSMD1	64478	broad.mit.edu	36	8	2807447	2807447	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	2807447	2807447	T	A	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	nonsense	c.9580	p.K3194*	0.02	NULL	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CSMD1	64478	broad.mit.edu	36	8	3064329	3064329	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	3064329	3064329	T	C	SNP	CSMD1	NM_033225	human	genbank	54_36p	-1	validated	missense	c.4531	p.R1511G	1	NULL	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PRAGMIN	157285	broad.mit.edu	36	8	8234453	8234453	+	Silent	SNP	G	G	A	rs56187292	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	8234453	8234453	G	A	SNP	PRAGMIN	NM_001080826	human	genbank	54_36p	-1	validated	silent	c.2265	p.T755	1	NULL	"HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
PRAGMIN	157285	broad.mit.edu	36	8	8272214	8272214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	8272214	8272214	G	A	SNP	PRAGMIN	NM_001080826	human	genbank	54_36p	-1	validated	missense	c.1115	p.P372L	0	NULL	"HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)"	-	no_errors
MFHAS1	9258	broad.mit.edu	36	8	8787473	8787473	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	8787473	8787473	C	A	SNP	MFHAS1	NM_004225	human	genbank	54_36p	-1	reviewed	missense	c.506	p.R169L	1	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1"	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Polo-box domain"	-	no_errors
TNKS	8658	broad.mit.edu	36	8	9647523	9647523	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	9647523	9647523	C	T	SNP	TNKS	NM_003747	human	genbank	54_36p	1	validated	missense	c.3130	p.R1044W	1	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_ADP-ribosylation,HMMPfam_PARP"	-	no_errors
RP1L1	94137	broad.mit.edu	36	8	10503593	10503593	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	10503593	10503593	C	T	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.5425	p.G1809R	0	HMMPfam_S-antigen	"superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen"	-	no_errors
RP1L1	94137	broad.mit.edu	36	8	10504154	10504154	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	10504154	10504154	G	A	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.4864	p.R1622W	0.01	NULL	"HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837"	-	no_errors
RP1L1	94137	broad.mit.edu	36	8	10506943	10506943	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	10506943	10506943	C	G	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	missense	c.2075	p.R692P	0	NULL	"HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837"	-	no_errors
RP1L1	94137	broad.mit.edu	36	8	10518074	10518074	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	10518074	10518074	G	T	SNP	RP1L1	NM_178857	human	genbank	54_36p	-1	validated	nonsense	c.48	p.C16*	0	NULL	"HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837"	-	no_errors
SOX7	83595	broad.mit.edu	36	8	10621374	10621374	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	10621374	10621374	C	G	SNP	SOX7	NM_031439	human	genbank	54_36p	-1	reviewed	missense	c.451	p.G151R	0.02	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
XKR6	286046	broad.mit.edu	36	8	10793071	10793071	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	10793071	10793071	C	T	SNP	XKR6	NM_173683	human	genbank	54_36p	-1	provisional	missense	c.1727	p.R576H	1	NULL	HMMPfam_XK-related	-	no_errors
XKR6	286046	broad.mit.edu	36	8	10819570	10819570	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	10819570	10819570	G	A	SNP	XKR6	NM_173683	human	genbank	54_36p	-1	provisional	silent	c.945	p.S315	1	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors
MTMR9	66036	broad.mit.edu	36	8	11211615	11211615	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	11211615	11211615	C	G	SNP	MTMR9	NM_015458	human	genbank	54_36p	1	reviewed	silent	c.1137	p.R379	1	superfamily_SSF52799	"superfamily_SSF50729,superfamily_SSF52799,HMMPfam_Myotub-related"	-	no_errors
USP17L2	377630	broad.mit.edu	36	8	12032685	12032685	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	12032685	12032685	C	T	SNP	DUB3	NM_201402	human	genbank	54_36p	-1	validated	missense	c.994	p.D332N	0.87	"superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_2"	"PatternScan_UCH_2_1,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_2"	-	no_errors
LONRF1	91694	broad.mit.edu	36	8	12624987	12624987	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	12624987	12624987	G	T	SNP	LONRF1	NM_152271	human	genbank	54_36p	-1	provisional	missense	c.2311	p.Q771K	1	NULL	"HMMSmart_SM00028,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_TPR-like,HMMPfam_LON,HMMSmart_SM00464"	-	no_errors
DLC1	10395	broad.mit.edu	36	8	13004676	13004676	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	13004676	13004676	C	T	SNP	DLC1	NM_182643	human	genbank	54_36p	-1	reviewed	silent	c.1560	p.R520	1	NULL	"HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
TUSC3	7991	broad.mit.edu	36	8	15632544	15632544	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	15632544	15632544	A	G	SNP	TUSC3	NM_006765	human	genbank	54_36p	1	reviewed	splice_site	c.799-2	e7-2	0.98	-	-	-	no_errors
PCM1	5108	broad.mit.edu	36	8	17857267	17857267	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	17857267	17857267	C	G	SNP	PCM1	NM_006197	human	genbank	54_36p	1	validated	missense	c.1297	p.Q433E	1	NULL	PatternScan_MOLYBDOPTERIN_EUK	-	no_errors
PCM1	5108	broad.mit.edu	36	8	17916392	17916392	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	17916392	17916392	T	C	SNP	PCM1	ENST00000400012	human	ensembl	54_36p	1	known	missense	c.527	p.L176P	0.95	NULL	NULL	-	no_start_codon
INTS10	55174	broad.mit.edu	36	8	19719442	19719442	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	19719442	19719442	A	G	SNP	INTS10	NM_018142	human	genbank	54_36p	1	validated	silent	c.114	p.A38	1	NULL	NULL	-	no_errors
INTS10	55174	broad.mit.edu	36	8	19735055	19735055	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	19735055	19735055	G	T	SNP	INTS10	NM_018142	human	genbank	54_36p	1	validated	missense	c.1473	p.E491D	1	NULL	NULL	-	no_errors
LPL	4023	broad.mit.edu	36	8	19856136	19856136	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	8	19856136	19856136	G	C	SNP	LPL	NM_000237	human	genbank	54_36p	1	reviewed	missense	c.767	p.G256A	0.96	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
SLC18A1	6570	broad.mit.edu	36	8	20082740	20082740	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	20082740	20082740	G	C	SNP	SLC18A1	NM_003053	human	genbank	54_36p	-1	validated	missense	c.16	p.L6V	0	NULL	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
LZTS1	11178	broad.mit.edu	36	8	20154665	20154666	+	Missense_Mutation	DNP	TG	TG	AC	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	20154665	20154666	TG	AC	DNP	LZTS1	NM_021020	human	genbank	54_36p	-1	validated	missense	c.1057_1056	p.M353L	1.000:0.993	NULL	HMMPfam_Fez1	-	no_errors
LZTS1	11178	broad.mit.edu	36	8	20154709	20154709	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	20154709	20154709	A	T	SNP	LZTS1	NM_021020	human	genbank	54_36p	-1	validated	missense	c.1013	p.L338H	1	NULL	HMMPfam_Fez1	-	no_errors
DOK2	9046	broad.mit.edu	36	8	21822857	21822857	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	21822857	21822857	C	A	SNP	DOK2	NM_003974	human	genbank	54_36p	-1	reviewed	missense	c.1150	p.V384F	0.01	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
XPO7	23039	broad.mit.edu	36	8	21917387	21917387	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	21917387	21917387	G	C	SNP	XPO7	NM_001100161	human	genbank	54_36p	1	validated	missense	c.3097	p.V1033L	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N"	-	no_errors
FAM160B2	64760	broad.mit.edu	36	8	22014083	22014083	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	22014083	22014083	C	A	SNP	FAM160B2	ENST00000289921	human	ensembl	54_36p	1	known	missense	c.1372	p.L458M	1	HMMPfam_RAI16-like	HMMPfam_RAI16-like	-	no_errors
HR	55806	broad.mit.edu	36	8	22041017	22041017	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	22041017	22041017	C	A	SNP	HR	NM_005144	human	genbank	54_36p	-1	reviewed	missense	c.883	p.A295S	0.43	NULL	"HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
REEP4	80346	broad.mit.edu	36	8	22052184	22052184	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	22052184	22052184	G	C	SNP	REEP4	ENST00000334530	human	ensembl	54_36p	-1	known	missense	c.485	p.S162C	0	NULL	HMMPfam_TB2_DP1_HVA22	-	no_errors
LGI3	203190	broad.mit.edu	36	8	22061981	22061981	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	22061981	22061981	G	T	SNP	LGI3	NM_139278	human	genbank	54_36p	-1	validated	missense	c.1284	p.H428Q	1	HMMPfam_EPTP	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMPfam_EPTP"	-	no_errors
BMP1	649	broad.mit.edu	36	8	22120416	22120416	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	22120416	22120416	A	T	SNP	BMP1	NM_006129	human	genbank	54_36p	1	reviewed	missense	c.2338	p.T780S	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	###############################################################################################################################################################################################################################################################	-	no_errors
C8orf58	541565	broad.mit.edu	36	8	22514410	22514410	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	22514410	22514410	C	A	SNP	C8orf58	NM_001013842	human	genbank	54_36p	1	validated	silent	c.111	p.P37	0	NULL	NULL	-	no_errors
BIN3	55909	broad.mit.edu	36	8	22537732	22537732	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	22537732	22537732	T	C	SNP	BIN3	NM_018688	human	genbank	54_36p	-1	reviewed	missense	c.428	p.E143G	1	"HMMSmart_SM00721,HMMPfam_BAR"	"HMMSmart_SM00721,HMMPfam_BAR"	-	no_errors
PEBP4	157310	broad.mit.edu	36	8	22731160	22731160	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	22731160	22731160	C	T	SNP	PEBP4	NM_144962	human	genbank	54_36p	-1	validated	missense	c.292	p.D98N	0.99	"superfamily_PEBP,HMMPfam_PBP,PatternScan_PBP"	"superfamily_PEBP,HMMPfam_PBP,PatternScan_PBP"	-	no_errors
RHOBTB2	23221	broad.mit.edu	36	8	22920504	22920504	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	22920504	22920504	C	T	SNP	RHOBTB2	NM_015178	human	genbank	54_36p	1	provisional	silent	c.801	p.D267	0.99	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	"superfamily_SSF52540,HMMSmart_RHO,HMMPfam_Ras,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	-	no_errors
RHOBTB2	23221	broad.mit.edu	36	8	22920742	22920742	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	22920742	22920742	G	A	SNP	RHOBTB2	NM_015178	human	genbank	54_36p	1	provisional	missense	c.1039	p.V347M	1	"HMMSmart_BTB,superfamily_BTB/POZ_fold"	"HMMSmart_BTB,HMMSmart_RHO,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMPfam_Ras,superfamily_SSF52540"	-	no_errors
TNFRSF10A	8797	broad.mit.edu	36	8	23116183	23116183	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	8	23116183	23116183	C	T	SNP	TNFRSF10A	NM_003844	human	genbank	54_36p	-1	reviewed	missense	c.440	p.R147Q	0	superfamily_TNF receptor-like	"superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death"	-	no_errors
TNFRSF10A	8797	broad.mit.edu	36	8	23125582	23125582	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	23125582	23125582	C	A	SNP	TNFRSF10A	NM_003844	human	genbank	54_36p	-1	reviewed	missense	c.395	p.C132F	0.37	superfamily_TNF receptor-like	"HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_DEATH domain,superfamily_TNF receptor-like"	-	no_errors
CHMP7	91782	broad.mit.edu	36	8	23174003	23174003	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	23174003	23174003	C	T	SNP	CHMP7	NM_152272	human	genbank	54_36p	1	validated	silent	c.1308	p.V436	1	NULL	HMMPfam_Snf7	-	no_errors
LOXL2	4017	broad.mit.edu	36	8	23281726	23281726	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	23281726	23281726	G	T	SNP	LOXL2	NM_002318	human	genbank	54_36p	-1	reviewed	missense	c.84	p.D28E	0.99	NULL	"superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE"	-	no_errors
NEFM	4741	broad.mit.edu	36	8	24829055	24829055	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	24829055	24829055	G	A	SNP	NEFM	NM_005382	human	genbank	54_36p	1	reviewed	silent	c.1113	p.R371	1	HMMPfam_Filament	"HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF"	-	no_errors
NEFL	4747	broad.mit.edu	36	8	24869819	24869819	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	24869819	24869819	T	C	SNP	NEFL	ENST00000221169	human	ensembl	54_36p	-1	known	missense	c.128	p.Y43C	1	HMMPfam_Filament_head	"HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF"	-	no_errors
DOCK5	80005	broad.mit.edu	36	8	25254382	25254382	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	8	25254382	25254382	G	T	SNP	DOCK5	NM_024940	human	genbank	54_36p	1	validated	missense	c.2400	p.M800I	0.83	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
DOCK5	80005	broad.mit.edu	36	8	25255872	25255872	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	25255872	25255872	A	G	SNP	DOCK5	NM_024940	human	genbank	54_36p	1	validated	missense	c.2549	p.N850S	1	NULL	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	-	no_errors
EBF2	64641	broad.mit.edu	36	8	25774565	25774565	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	25774565	25774565	G	A	SNP	EBF2	NM_022659	human	genbank	54_36p	-1	validated	missense	c.1259	p.A420V	1	NULL	"PatternScan_COE,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMSmart_HLH"	-	no_errors
PPP2R2A	5520	broad.mit.edu	36	8	26283770	26283770	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	8	26283770	26283770	C	T	SNP	PPP2R2A	NM_002717	human	genbank	54_36p	1	reviewed	missense	c.1268	p.A423V	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N,PatternScan_PR55_1,HMMPfam_PP2A_B_subs_rcg,PatternScan_PR55_2"	-	no_errors
PTK2B	2185	broad.mit.edu	36	8	27359323	27359323	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	27359323	27359323	G	T	SNP	PTK2B	NM_004103	human	genbank	54_36p	1	reviewed	silent	c.2310	p.R770	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SCARA3	51435	broad.mit.edu	36	8	27584534	27584534	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	27584534	27584534	G	C	SNP	SCARA3	NM_016240	human	genbank	54_36p	1	reviewed	missense	c.1568	p.G523A	1	NULL	HMMPfam_Collagen	-	no_errors
FBXO16	157574	broad.mit.edu	36	8	28370266	28370266	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	28370266	28370266	T	A	SNP	FBXO16	NM_172366	human	genbank	54_36p	-1	reviewed	missense	c.443	p.E148V	1	superfamily_SSF81383	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX"	-	no_errors
HMBOX1	79618	broad.mit.edu	36	8	28932300	28932300	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	28932300	28932300	C	G	SNP	HMBOX1	NM_024567	human	genbank	54_36p	1	validated	missense	c.802	p.R268G	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
DUSP4	1846	broad.mit.edu	36	8	29258942	29258942	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	29258942	29258942	G	A	SNP	DUSP4	NM_057158	human	genbank	54_36p	-1	reviewed	silent	c.24	p.N8	0.02	NULL	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
DCTN6	10671	broad.mit.edu	36	8	30152190	30152190	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	30152190	30152190	G	A	SNP	DCTN6	NM_006571	human	genbank	54_36p	1	reviewed	missense	c.136	p.G46R	1	superfamily_Trimeric LpxA-like enzymes	"superfamily_Trimeric LpxA-like enzymes,HMMPfam_Hexapep"	-	no_errors
GSR	2936	broad.mit.edu	36	8	30670114	30670114	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	30670114	30670114	C	G	SNP	GSR	NM_000637	human	genbank	54_36p	-1	validated	missense	c.796	p.V266L	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,PatternScan_PYRIDINE_REDOX_1,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,HMMPfam_Pyr_redox_dim"	-	no_errors
TEX15	56154	broad.mit.edu	36	8	30820551	30820551	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	30820551	30820551	G	C	SNP	TEX15	NM_031271	human	genbank	54_36p	-1	validated	missense	c.5525	p.S1842C	0.03	NULL	NULL	-	no_errors
TEX15	56154	broad.mit.edu	36	8	30825598	30825598	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	30825598	30825598	A	G	SNP	TEX15	NM_031271	human	genbank	54_36p	-1	validated	missense	c.478	p.S160P	0	NULL	NULL	-	no_errors
PURG	29942	broad.mit.edu	36	8	31009734	31009734	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	31009734	31009734	T	A	SNP	PURG	NM_013357	human	genbank	54_36p	-1	reviewed	missense	c.107	p.H36L	0.98	NULL	"HMMPfam_PurA,HMMSmart_SM00712"	-	no_errors
WRN	7486	broad.mit.edu	36	8	31044217	31044217	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	31044217	31044217	C	G	SNP	WRN	NM_000553	human	genbank	54_36p	1	reviewed	missense	c.631	p.L211V	0.98	"HMMSmart_SM00474,HMMPfam_3_5_exonuc,superfamily_Ribonuclease H-like"	"HMMSmart_SM00474,HMMPfam_3_5_exonuc,superfamily_Ribonuclease H-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_RQC,HMMSmart_SM00341,HMMPfam_HRDC"	-	no_errors
WRN	7486	broad.mit.edu	36	8	31062279	31062279	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	31062279	31062279	A	G	SNP	WRN	NM_000553	human	genbank	54_36p	1	reviewed	missense	c.1406	p.E469G	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HRDC,HMMSmart_SM00341,HMMPfam_3_5_exonuc,HMMSmart_SM00474,HMMPfam_DEAD,superfamily_Ribonuclease H-like,HMMSmart_SM00487,HMMPfam_RQC,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NRG1	3084	broad.mit.edu	36	8	32740361	32740361	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	32740361	32740361	G	T	SNP	NRG1	NM_013960	human	genbank	54_36p	1	reviewed	missense	c.1352	p.R451I	1	HMMPfam_Neuregulin	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Neuregulin"	-	no_errors
NRG1	3084	broad.mit.edu	36	8	32741319	32741319	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	32741319	32741319	C	G	SNP	NRG1	NM_013956	human	genbank	54_36p	1	reviewed	missense	c.1795	p.P599A	1	HMMPfam_Neuregulin	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,HMMPfam_Neuregulin"	-	no_errors
UNC5D	137970	broad.mit.edu	36	8	35736450	35736450	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	35736450	35736450	G	T	SNP	UNC5D	NM_080872	human	genbank	54_36p	1	validated	missense	c.2219	p.G740V	1	NULL	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
KCNU1	157855	broad.mit.edu	36	8	36811520	36811520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	36811520	36811520	C	T	SNP	KCNU1	NM_001031836	human	genbank	54_36p	1	validated	missense	c.1271	p.A424V	1	superfamily_NAD(P)-bd	"superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,HMMPfam_BK_channel_a"	-	no_errors
GPR124	25960	broad.mit.edu	36	8	37791599	37791599	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	37791599	37791599	G	T	SNP	GPR124	NM_032777	human	genbank	54_36p	1	validated	silent	c.273	p.G91	0.17	"superfamily_L domain-like,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_HRM,HMMPfam_GPS,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR124	25960	broad.mit.edu	36	8	37809740	37809740	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	37809740	37809740	C	T	SNP	GPR124	NM_032777	human	genbank	54_36p	1	validated	silent	c.1131	p.P377	1	"HMMPfam_HRM,superfamily_Hormone receptor domain (HRM Pfam 02793)"	"HMMPfam_GPS,HMMSmart_SM00082,HMMPfam_LRR_1,HMMPfam_HRM,HMMSmart_SM00369,HMMSmart_SM00409,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_L domain-like"	-	no_errors
GPR124	25960	broad.mit.edu	36	8	37809764	37809764	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	37809764	37809764	G	C	SNP	GPR124	NM_032777	human	genbank	54_36p	1	validated	silent	c.1155	p.G385	1	"HMMPfam_HRM,superfamily_Hormone receptor domain (HRM Pfam 02793)"	"HMMPfam_GPS,HMMSmart_SM00082,HMMPfam_LRR_1,HMMPfam_HRM,HMMSmart_SM00369,HMMSmart_SM00409,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_L domain-like"	-	no_errors
GPR124	25960	broad.mit.edu	36	8	37816892	37816892	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	37816892	37816892	C	G	SNP	GPR124	NM_032777	human	genbank	54_36p	1	validated	silent	c.2586	p.P862	0.88	NULL	"HMMPfam_GPS,HMMSmart_SM00082,HMMPfam_LRR_1,HMMPfam_HRM,HMMSmart_SM00369,HMMSmart_SM00409,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_L domain-like"	-	no_errors
RAB11FIP1	80223	broad.mit.edu	36	8	37848787	37848787	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	37848787	37848787	G	A	SNP	RAB11FIP1	NM_001002814	human	genbank	54_36p	-1	validated	silent	c.2691	p.V897	0	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP"	-	no_errors
RAB11FIP1	80223	broad.mit.edu	36	8	37854031	37854031	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	37854031	37854031	A	T	SNP	RAB11FIP1	NM_001002814	human	genbank	54_36p	-1	validated	missense	c.568	p.S190T	0.88	NULL	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_RBD-FIP"	-	no_errors
RAB11FIP1	80223	broad.mit.edu	36	8	37876007	37876008	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	37876007	37876008	-	C	INS	RAB11FIP1	NM_001002814	human	genbank	54_36p	-1	validated	frame_shift_ins	c.111_110	p.T38fs	1.000:1.000	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RBD-FIP"	-	no_errors
EIF4EBP1	1978	broad.mit.edu	36	8	38033901	38033901	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	38033901	38033901	C	A	SNP	EIF4EBP1	NM_004095	human	genbank	54_36p	1	reviewed	missense	c.291	p.H97Q	0.37	HMMPfam_eIF_4EBP	HMMPfam_eIF_4EBP	-	no_errors
BAG4	9530	broad.mit.edu	36	8	38187027	38187027	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	38187027	38187027	T	A	SNP	BAG4	NM_004874	human	genbank	54_36p	1	reviewed	silent	c.1233	p.L411	0.99	"superfamily_SSF63491,HMMPfam_BAG,HMMSmart_BAG"	"superfamily_SSF63491,HMMPfam_BAG,HMMSmart_BAG"	-	no_errors
WHSC1L1	54904	broad.mit.edu	36	8	38314066	38314066	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	38314066	38314066	C	G	SNP	WHSC1L1	NM_023034	human	genbank	54_36p	-1	reviewed	missense	c.824	p.W275S	1	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293"	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508"	-	no_errors
ADAM18	8749	broad.mit.edu	36	8	39622094	39622094	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	39622094	39622094	T	C	SNP	ADAM18	NM_014237	human	genbank	54_36p	1	reviewed	silent	c.990	p.D330	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin"	###############################################################################################################################################################################################################################################################	-	no_errors
ADAM2	2515	broad.mit.edu	36	8	39813854	39813854	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	39813854	39813854	C	T	SNP	ADAM2	NM_001464	human	genbank	54_36p	-1	reviewed	silent	c.90	p.P30	0	HMMPfam_Pep_M12B_propep	###############################################################################################################################################################################################################################################################	-	no_errors
IDO2	169355	broad.mit.edu	36	8	39925913	39925913	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	8	39925913	39925913	G	T	SNP	IDO2	NM_194294	human	genbank	54_36p	1	validated	missense	c.111	p.E37D	0.94	HMMPfam_IDO	HMMPfam_IDO	-	no_errors
IDO2	169355	broad.mit.edu	36	8	39959375	39959375	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	39959375	39959375	C	A	SNP	IDO2	NM_194294	human	genbank	54_36p	1	validated	missense	c.402	p.N134K	0.02	HMMPfam_IDO	HMMPfam_IDO	-	no_errors
ANK1	286	broad.mit.edu	36	8	41662847	41662847	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	41662847	41662847	C	T	SNP	ANK1	NM_020476	human	genbank	54_36p	-1	reviewed	missense	c.4370	p.R1457H	1	"HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00005,superfamily_DEATH domain,HMMPfam_Death"	-	no_errors
ANK1	286	broad.mit.edu	36	8	41699886	41699886	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	41699886	41699886	G	T	SNP	ANK1	NM_020476	human	genbank	54_36p	-1	reviewed	missense	c.823	p.P275T	1	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Death,HMMSmart_SM00005,HMMPfam_ZU5,HMMSmart_SM00218,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_DEATH domain"	-	no_errors
ANK1	286	broad.mit.edu	36	8	41734807	41734807	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	41734807	41734807	A	T	SNP	ANK1	NM_020476	human	genbank	54_36p	-1	reviewed	missense	c.33	p.D11E	1	"HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Death,HMMSmart_SM00005,HMMPfam_ZU5,HMMSmart_SM00218,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_DEATH domain"	-	no_errors
MYST3	7994	broad.mit.edu	36	8	41924575	41924575	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	41924575	41924575	C	T	SNP	MYST3	NM_001099412	human	genbank	54_36p	-1	validated	missense	c.1753	p.V585M	1	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_MOZ_SAS"	"HMMSmart_H15,superfamily_SSF46785,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING,PatternScan_ZF_PHD_1,superfamily_FYVE_PHD_ZnF,superfamily_Acyl_CoA_acyltransferase,HMMPfam_MOZ_SAS"	-	no_errors
MYST3	7994	broad.mit.edu	36	8	41951494	41951494	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	41951494	41951494	T	C	SNP	MYST3	NM_001099412	human	genbank	54_36p	-1	validated	missense	c.1367	p.N456S	1	NULL	"HMMSmart_RING,HMMSmart_PHD,HMMPfam_MOZ_SAS,HMMSmart_H15,superfamily_FYVE_PHD_ZnF,superfamily_Acyl_CoA_acyltransferase,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF46785"	-	no_errors
IKBKB	3551	broad.mit.edu	36	8	42299098	42299098	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	42299098	42299098	G	A	SNP	IKBKB	NM_001556	human	genbank	54_36p	1	validated	missense	c.1915	p.D639N	1	NULL	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_ubiquitin"	-	no_errors
DKK4	27121	broad.mit.edu	36	8	42350856	42350856	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	42350856	42350856	A	G	SNP	DKK4	NM_014420	human	genbank	54_36p	-1	reviewed	silent	c.594	p.P198	0.79	NULL	HMMPfam_Dickkopf_N	-	no_errors
SLC20A2	6575	broad.mit.edu	36	8	42394594	42394594	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	42394594	42394594	C	T	SNP	SLC20A2	NM_006749	human	genbank	54_36p	-1	provisional	missense	c.1843	p.D615N	1	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors
SLC20A2	6575	broad.mit.edu	36	8	42406894	42406894	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	42406894	42406894	C	A	SNP	SLC20A2	NM_006749	human	genbank	54_36p	-1	provisional	missense	c.1554	p.W518C	1	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors
CHRNB3	1142	broad.mit.edu	36	8	42706201	42706201	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	42706201	42706201	C	T	SNP	CHRNB3	NM_000749	human	genbank	54_36p	1	validated	silent	c.594	p.N198	0.76	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
CHRNB3	1142	broad.mit.edu	36	8	42706472	42706472	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	42706472	42706472	T	A	SNP	CHRNB3	NM_000749	human	genbank	54_36p	1	validated	missense	c.865	p.S289T	0.97	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore"	"HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
FNTA	2339	broad.mit.edu	36	8	43030803	43030803	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	43030803	43030803	G	T	SNP	FNTA	NM_002027	human	genbank	54_36p	1	reviewed	missense	c.157	p.D53Y	1	NULL	"superfamily_Protein prenylyltransferase,HMMPfam_PPTA"	-	no_errors
PRKDC	5591	broad.mit.edu	36	8	48896744	48896744	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	48896744	48896744	T	C	SNP	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	missense	c.9082	p.K3028E	0.97	HMMPfam_FAT	"superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
PRKDC	5591	broad.mit.edu	36	8	48930434	48930434	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	T	T	-	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	48930434	48930434	T	-	DEL	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	frame_shift_del	c.6660	p.K2220fs	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	"(deletion:cds_exon[48930336,48930487])"	no_errors
PRKDC	5591	broad.mit.edu	36	8	48963679	48963684	+	In_Frame_Del	DEL	TACAGG	-	TACAGG	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	TACAGG	TACAGG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	48963679	48963684	TACAGG	-	DEL	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	in_frame_del	c.4363_4358	p.ACK1453in_frame_delE	1.000:1.000:1.000:1.000:0.988:0.998	NULL	"HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	"(deletion:cds_exon[48963632,48963764])"	no_errors
PRKDC	5591	broad.mit.edu	36	8	48968400	48968400	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	48968400	48968400	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	silent	c.3699	p.S1233	0.01	NULL	"HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
PRKDC	5591	broad.mit.edu	36	8	48973650	48973650	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	48973650	48973650	G	C	SNP	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	missense	c.3397	p.H1133D	1	superfamily_ARM repeat	"HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
PRKDC	5591	broad.mit.edu	36	8	49004231	49004231	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	49004231	49004231	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	54_36p	-1	known	missense	c.2113	p.A705T	1	superfamily_ARM repeat	"HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
MCM4	4173	broad.mit.edu	36	8	49045720	49045720	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	49045720	49045720	G	A	SNP	MCM4	NM_005914	human	genbank	54_36p	1	reviewed	missense	c.1531	p.D511N	1	"HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA"	"superfamily_Nucleic_acid_OB,HMMSmart_MCM,HMMPfam_MCM,superfamily_SSF52540,HMMSmart_AAA,PatternScan_MCM_1"	-	no_errors
SNAI2	6591	broad.mit.edu	36	8	49995233	49995233	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	49995233	49995233	T	C	SNP	SNAI2	NM_003068	human	genbank	54_36p	-1	reviewed	missense	c.400	p.N134D	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SNTG1	54212	broad.mit.edu	36	8	51525826	51525826	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	51525826	51525826	G	A	SNP	SNTG1	NM_018967	human	genbank	54_36p	1	reviewed	missense	c.347	p.C116Y	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
SNTG1	54212	broad.mit.edu	36	8	51611798	51611798	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	51611798	51611798	T	A	SNP	SNTG1	NM_018967	human	genbank	54_36p	1	reviewed	nonsense	c.557	p.L186*	0.36	HMMSmart_SM00233	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
SNTG1	54212	broad.mit.edu	36	8	51611850	51611850	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	51611850	51611850	G	A	SNP	SNTG1	NM_018967	human	genbank	54_36p	1	reviewed	nonsense	c.609	p.W203*	1	"HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
PXDNL	137902	broad.mit.edu	36	8	52414735	52414735	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	52414735	52414735	A	G	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	splice_site	c.4146+2	e21+2	0.1	-	-	-	no_errors
PXDNL	137902	broad.mit.edu	36	8	52483360	52483360	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	52483360	52483360	A	G	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	missense	c.3377	p.L1126P	1	"superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase"	###############################################################################################################################################################################################################################################################	-	no_errors
PXDNL	137902	broad.mit.edu	36	8	52484641	52484641	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	52484641	52484641	G	C	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	missense	c.2096	p.S699C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PXDNL	137902	broad.mit.edu	36	8	52550145	52550145	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	52550145	52550145	A	G	SNP	PXDNL	NM_144651	human	genbank	54_36p	-1	validated	missense	c.634	p.Y212H	0.11	"HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ST18	9705	broad.mit.edu	36	8	53234147	53234147	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	53234147	53234147	C	T	SNP	ST18	NM_014682	human	genbank	54_36p	-1	validated	missense	c.1670	p.R557H	0.77	HMMPfam_MYT1	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1"	-	no_errors
ST18	9705	broad.mit.edu	36	8	53240338	53240338	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	8	53240338	53240338	A	G	SNP	ST18	NM_014682	human	genbank	54_36p	-1	validated	missense	c.1205	p.I402T	1	superfamily_SSF103637	"HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_SSF103637"	-	no_errors
RB1CC1	9821	broad.mit.edu	36	8	53717570	53717570	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	53717570	53717570	C	A	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	nonsense	c.4231	p.G1411*	1	NULL	"superfamily_SSF54236,HMMPfam_ATG11"	-	no_errors
RB1CC1	9821	broad.mit.edu	36	8	53717636	53717638	+	In_Frame_Del	DEL	CTT	-	CTT	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	CTT	CTT	-	-	CTT	CTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	53717636	53717638	CTT	-	DEL	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	in_frame_del	c.4165_4163	p.E1388in_frame_del	1.000:1.000:1.000	NULL	"superfamily_SSF54236,HMMPfam_ATG11"	"(deletion:cds_exon[53717464,53717704])"	no_errors
RB1CC1	9821	broad.mit.edu	36	8	53717639	53717639	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	53717639	53717639	C	A	SNP	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	nonsense	c.4162	p.E1388*	1	NULL	"HMMPfam_ATG11,superfamily_SSF54236"	-	no_errors
RB1CC1	9821	broad.mit.edu	36	8	53731173	53731175	+	In_Frame_Del	DEL	CAA	-	CAA	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	CAA	CAA	-	-	CAA	CAA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	53731173	53731175	CAA	-	DEL	RB1CC1	NM_014781	human	genbank	54_36p	-1	validated	in_frame_del	c.3769_3767	p.V1256in_frame_del	1.000:0.999:0.996	NULL	"HMMPfam_ATG11,superfamily_SSF54236"	"(deletion:cds_exon[53731121,53733021])"	no_errors
NPBWR1	2831	broad.mit.edu	36	8	54015983	54015983	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	54015983	54015983	G	A	SNP	NPBWR1	NM_005285	human	genbank	54_36p	1	validated	silent	c.963	p.L321	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
NPBWR1	2831	broad.mit.edu	36	8	54015988	54015988	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	54015988	54015988	C	T	SNP	NPBWR1	NM_005285	human	genbank	54_36p	1	validated	missense	c.968	p.T323I	0.98	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
RGS20	8601	broad.mit.edu	36	8	55033562	55033562	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	8	55033562	55033562	T	C	SNP	RGS20	NM_170587	human	genbank	54_36p	1	validated	silent	c.1158	p.I386	0	NULL	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
RP1	6101	broad.mit.edu	36	8	55699974	55699974	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	55699974	55699974	C	G	SNP	RP1	ENST00000220676	human	ensembl	54_36p	1	known	missense	c.979	p.Q327E	1	NULL	"superfamily_SSF89837,HMMSmart_DCX,HMMPfam_DCX"	-	no_errors
RP1	6101	broad.mit.edu	36	8	55702786	55702786	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	55702786	55702786	T	A	SNP	RP1	ENST00000220676	human	ensembl	54_36p	1	known	missense	c.3791	p.V1264E	0	NULL	"HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837"	-	no_errors
RP1	6101	broad.mit.edu	36	8	55704383	55704383	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	55704383	55704383	G	T	SNP	RP1	ENST00000220676	human	ensembl	54_36p	1	known	silent	c.5388	p.T1796	0	NULL	"HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837"	-	no_errors
RP1	6101	broad.mit.edu	36	8	55705226	55705226	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	55705226	55705226	G	T	SNP	RP1	ENST00000220676	human	ensembl	54_36p	1	known	missense	c.6231	p.Q2077H	0.84	NULL	"HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837"	-	no_errors
XKR4	114786	broad.mit.edu	36	8	56177895	56177895	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	56177895	56177895	T	A	SNP	XKR4	NM_052898	human	genbank	54_36p	1	provisional	missense	c.293	p.L98Q	1	NULL	HMMPfam_XK-related	-	no_errors
TMEM68	137695	broad.mit.edu	36	8	56831423	56831423	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	56831423	56831423	T	C	SNP	TMEM68	NM_152417	human	genbank	54_36p	-1	provisional	missense	c.427	p.K143E	1	"HMMPfam_Acyltransferase,HMMSmart_PlsC"	"HMMPfam_Acyltransferase,HMMSmart_PlsC"	-	no_errors
TGS1	96764	broad.mit.edu	36	8	56886027	56886027	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	56886027	56886027	C	G	SNP	TGS1	NM_024831	human	genbank	54_36p	1	validated	missense	c.2177	p.A726G	1	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_15"	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_15"	-	no_errors
MOS	4342	broad.mit.edu	36	8	57188055	57188055	+	Nonstop_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	57188055	57188055	T	A	SNP	MOS	NM_005372	human	genbank	54_36p	-1	validated	nonstop	c.1041	p.*347C	0.12	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
IMPAD1	54928	broad.mit.edu	36	8	58041306	58041306	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	58041306	58041306	G	C	SNP	IMPAD1	NM_017813	human	genbank	54_36p	-1	validated	missense	c.806	p.A269G	1	"HMMPfam_Inositol_P,superfamily_SSF56655"	"PatternScan_IMP_1,HMMPfam_Inositol_P,superfamily_SSF56655,PatternScan_IMP_2"	-	no_errors
UBXN2B	137886	broad.mit.edu	36	8	59521102	59521102	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	59521102	59521102	G	A	SNP	UBXN2B	NM_001077619	human	genbank	54_36p	1	validated	missense	c.754	p.D252N	1	"superfamily_SSF54236,HMMPfam_UBX,HMMSmart_UBX"	"superfamily_SEP,HMMSmart_SEP,HMMPfam_SEP,superfamily_SSF54236,HMMPfam_UBX,HMMSmart_UBX"	-	no_errors
CYP7A1	1581	broad.mit.edu	36	8	59566702	59566702	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	59566702	59566702	C	G	SNP	CYP7A1	NM_000780	human	genbank	54_36p	-1	reviewed	missense	c.1401	p.L467F	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CHD7	55636	broad.mit.edu	36	8	61898988	61898988	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	61898988	61898988	C	T	SNP	CHD7	NM_017780	human	genbank	54_36p	1	reviewed	silent	c.3237	p.A1079	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N"	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
CHD7	55636	broad.mit.edu	36	8	61940738	61940738	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	61940738	61940738	T	C	SNP	CHD7	NM_017780	human	genbank	54_36p	1	reviewed	missense	c.8686	p.S2896P	1	NULL	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ASPH	444	broad.mit.edu	36	8	62651905	62651905	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	62651905	62651905	C	G	SNP	ASPH	NM_004318	human	genbank	54_36p	-1	validated	missense	c.1129	p.A377P	0.91	superfamily_SSF48452	"HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452,HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197"	-	no_errors
CYP7B1	9420	broad.mit.edu	36	8	65671997	65671997	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	65671997	65671997	G	A	SNP	CYP7B1	NM_004820	human	genbank	54_36p	-1	reviewed	missense	c.1277	p.T426I	0.08	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450"	-	no_errors
CYP7B1	9420	broad.mit.edu	36	8	65690224	65690224	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	65690224	65690224	G	T	SNP	CYP7B1	NM_004820	human	genbank	54_36p	-1	reviewed	missense	c.970	p.R324S	1	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450"	-	no_errors
MYBL1	4603	broad.mit.edu	36	8	67639598	67639598	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	67639598	67639598	T	C	SNP	MYBL1	NM_001080416	human	genbank	54_36p	-1	validated	missense	c.2147	p.E716G	1	NULL	"superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,HMMPfam_Wos2,HMMPfam_Cmyb_C"	-	no_errors
VCPIP1	80124	broad.mit.edu	36	8	67740310	67740310	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	67740310	67740310	C	G	SNP	VCPIP1	NM_025054	human	genbank	54_36p	-1	validated	missense	c.1438	p.V480L	1	NULL	HMMPfam_OTU	-	no_errors
C8orf45	157777	broad.mit.edu	36	8	67970964	67970964	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	67970964	67970964	G	T	SNP	C8orf45	NM_173518	human	genbank	54_36p	1	validated	nonsense	c.1270	p.E424*	1	NULL	NULL	-	no_errors
CSPP1	79848	broad.mit.edu	36	8	68233900	68233900	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	68233900	68233900	G	C	SNP	CSPP1	NM_001077204	human	genbank	54_36p	1	validated	missense	c.2602	p.D868H	0.83	NULL	NULL	-	no_errors
ARFGEF1	10565	broad.mit.edu	36	8	68301929	68301929	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	68301929	68301929	C	T	SNP	ARFGEF1	NM_006421	human	genbank	54_36p	-1	reviewed	missense	c.3913	p.V1305I	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,HMMPfam_DUF1981"	-	no_errors
CPA6	57094	broad.mit.edu	36	8	68584313	68584313	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	68584313	68584313	A	C	SNP	CPA6	NM_020361	human	genbank	54_36p	-1	validated	missense	c.527	p.I176S	1	"superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14"	"superfamily_Protease propeptides/inhibitors,HMMPfam_Propep_M14,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_2"	-	no_errors
SULF1	23213	broad.mit.edu	36	8	70661237	70661237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	70661237	70661237	C	G	SNP	SULF1	NM_015170	human	genbank	54_36p	1	validated	missense	c.504	p.F168L	1	"HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core"	"PatternScan_SULFATASE_2,HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core,PatternScan_SULFATASE_1"	-	no_errors
SULF1	23213	broad.mit.edu	36	8	70702641	70702641	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	70702641	70702641	C	A	SNP	SULF1	NM_015170	human	genbank	54_36p	1	validated	missense	c.2028	p.S676R	1	superfamily_Alkaline_phosphatase_core	"HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core"	-	no_errors
SLCO5A1	81796	broad.mit.edu	36	8	70747889	70747889	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	70747889	70747889	C	G	SNP	SLCO5A1	NM_030958	human	genbank	54_36p	-1	reviewed	missense	c.2316	p.Q772H	1	superfamily_MFS_gen_substrate_transporter	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
PRDM14	63978	broad.mit.edu	36	8	71141225	71141225	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	71141225	71141225	C	T	SNP	PRDM14	NM_024504	human	genbank	54_36p	-1	validated	missense	c.982	p.V328I	1	"HMMSmart_SET,superfamily_SSF82199"	"HMMSmart_SET,superfamily_SSF82199,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
TRAM1	23471	broad.mit.edu	36	8	71661745	71661745	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	71661745	71661745	C	G	SNP	TRAM1	NM_014294	human	genbank	54_36p	-1	provisional	missense	c.685	p.V229L	1	"HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	"HMMPfam_TRAM1,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
EYA1	2138	broad.mit.edu	36	8	72344570	72344570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	72344570	72344570	G	A	SNP	EYA1	NM_000503	human	genbank	54_36p	-1	reviewed	missense	c.1009	p.H337Y	1	HMMPfam_Hydrolase	HMMPfam_Hydrolase	-	no_errors
EYA1	2138	broad.mit.edu	36	8	72396627	72396627	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	72396627	72396627	G	C	SNP	EYA1	NM_000503	human	genbank	54_36p	-1	reviewed	missense	c.314	p.T105S	1	NULL	HMMPfam_Hydrolase	-	no_errors
EYA1	2138	broad.mit.edu	36	8	72429579	72429579	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	72429579	72429579	C	T	SNP	EYA1	NM_000503	human	genbank	54_36p	-1	reviewed	missense	c.116	p.G39D	1	NULL	HMMPfam_Hydrolase	-	no_errors
TRPA1	8989	broad.mit.edu	36	8	73111130	73111130	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	73111130	73111130	A	G	SNP	TRPA1	NM_007332	human	genbank	54_36p	-1	reviewed	silent	c.2502	p.C834	1	HMMPfam_Ion_trans	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_EF_HAND_1,HMMPfam_Ion_trans"	-	no_errors
TRPA1	8989	broad.mit.edu	36	8	73134192	73134192	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	73134192	73134192	T	G	SNP	TRPA1	NM_007332	human	genbank	54_36p	-1	reviewed	missense	c.980	p.Y327S	1	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,PatternScan_EF_HAND_1"	-	no_errors
TRPA1	8989	broad.mit.edu	36	8	73136525	73136525	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	73136525	73136525	A	G	SNP	TRPA1	NM_007332	human	genbank	54_36p	-1	reviewed	missense	c.833	p.F278S	1	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,PatternScan_EF_HAND_1"	-	no_errors
KCNB2	9312	broad.mit.edu	36	8	74011716	74011716	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	74011716	74011716	G	T	SNP	KCNB2	NM_004770	human	genbank	54_36p	1	reviewed	silent	c.1572	p.L524	1	HMMPfam_Kv2channel	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Kv2channel"	-	no_errors
TMEM70	54968	broad.mit.edu	36	8	75051189	75051189	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	75051189	75051189	C	A	SNP	TMEM70	NM_017866	human	genbank	54_36p	1	validated	missense	c.119	p.S40Y	0.03	NULL	HMMPfam_DUF1301	-	no_errors
TMEM70	54968	broad.mit.edu	36	8	75056274	75056274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	75056274	75056274	C	T	SNP	TMEM70	NM_017866	human	genbank	54_36p	1	validated	missense	c.647	p.T216I	1	HMMPfam_DUF1301	HMMPfam_DUF1301	-	no_errors
JPH1	56704	broad.mit.edu	36	8	75319448	75319448	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	75319448	75319448	G	A	SNP	JPH1	NM_020647	human	genbank	54_36p	-1	reviewed	missense	c.1775	p.S592F	0.48	NULL	"superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN"	-	no_errors
HNF4G	3174	broad.mit.edu	36	8	76638801	76638801	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	76638801	76638801	G	A	SNP	HNF4G	NM_004133	human	genbank	54_36p	1	validated	missense	c.1253	p.G418D	1	NULL	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
ZFHX4	79776	broad.mit.edu	36	8	77780713	77780713	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	77780713	77780713	G	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	missense	c.1835	p.G612V	1	NULL	"HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ZFHX4	79776	broad.mit.edu	36	8	77781037	77781037	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	77781037	77781037	C	A	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	nonsense	c.2159	p.S720*	1	"HMMSmart_SM00451,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZFHX4	79776	broad.mit.edu	36	8	77924389	77924389	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	77924389	77924389	G	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	silent	c.3597	p.P1199	0.63	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZFHX4	79776	broad.mit.edu	36	8	77928837	77928837	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	77928837	77928837	C	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	silent	c.6990	p.N2330	0	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZFHX4	79776	broad.mit.edu	36	8	77929051	77929051	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	77929051	77929051	C	T	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	nonsense	c.7204	p.Q2402*	0.96	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZFHX4	79776	broad.mit.edu	36	8	77929104	77929104	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	77929104	77929104	G	A	SNP	ZFHX4	NM_024721	human	genbank	54_36p	1	validated	silent	c.7257	p.S2419	0.97	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
PEX2	5828	broad.mit.edu	36	8	78058564	78058564	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	78058564	78058564	T	A	SNP	PXMP3	NM_000318	human	genbank	54_36p	-1	reviewed	nonsense	c.406	p.K136*	0.02	HMMPfam_Pex2_Pex12	"HMMPfam_Pex2_Pex12,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
FAM164A	51101	broad.mit.edu	36	8	79773254	79773254	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	79773254	79773254	C	T	SNP	FAM164A	NM_016010	human	genbank	54_36p	1	validated	missense	c.655	p.L219F	1	NULL	NULL	-	no_errors
STMN2	11075	broad.mit.edu	36	8	80716197	80716197	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	80716197	80716197	G	A	SNP	STMN2	NM_007029	human	genbank	54_36p	1	provisional	missense	c.145	p.A49T	1	"superfamily_Stathmin,HMMPfam_Stathmin"	"superfamily_Stathmin,HMMPfam_Stathmin,PatternScan_STATHMIN_1,PatternScan_STATHMIN_2"	-	no_errors
ZBTB10	65986	broad.mit.edu	36	8	81593361	81593361	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	81593361	81593361	G	A	SNP	ZBTB10	NM_001105539	human	genbank	54_36p	1	validated	nonsense	c.2129	p.W710*	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFAND1	79752	broad.mit.edu	36	8	82788800	82788800	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	82788800	82788800	G	A	SNP	ZFAND1	NM_024699	human	genbank	54_36p	-1	provisional	nonsense	c.388	p.R130*	1	NULL	"HMMSmart_SM00154,HMMPfam_zf-AN1"	-	no_errors
CHMP4C	92421	broad.mit.edu	36	8	82830160	82830160	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	82830160	82830160	G	A	SNP	CHMP4C	NM_152284	human	genbank	54_36p	1	validated	missense	c.369	p.M123I	1	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors
RALYL	138046	broad.mit.edu	36	8	85849431	85849431	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	85849431	85849431	T	C	SNP	RALYL	NM_001100391	human	genbank	54_36p	1	validated	missense	c.358	p.S120P	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
CA1	759	broad.mit.edu	36	8	86433099	86433099	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	86433099	86433099	A	-	DEL	CA1	NM_001738	human	genbank	54_36p	-1	validated	frame_shift_del	c.357	p.H120fs	1	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	"(deletion:cds_exon[86433006,86433101])"	no_errors
CA3	761	broad.mit.edu	36	8	86539302	86539302	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	86539302	86539302	T	G	SNP	CA3	NM_005181	human	genbank	54_36p	1	reviewed	silent	c.144	p.S48	0	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase"	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
CPNE3	8895	broad.mit.edu	36	8	87629648	87629648	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	87629648	87629648	G	A	SNP	CPNE3	NM_003909	human	genbank	54_36p	1	reviewed	missense	c.883	p.G295R	1	"superfamily_SSF53300,HMMSmart_VWA"	"HMMSmart_C2,HMMPfam_C2,superfamily_C2_CaLB,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	-	no_errors
CNBD1	168975	broad.mit.edu	36	8	87968945	87968945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	87968945	87968945	G	C	SNP	CNBD1	NM_173538	human	genbank	54_36p	1	provisional	missense	c.148	p.G50R	0.78	NULL	"PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,HMMPfam_cNMP_binding"	-	no_errors
CNBD1	168975	broad.mit.edu	36	8	88021014	88021014	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	88021014	88021014	A	G	SNP	CNBD1	NM_173538	human	genbank	54_36p	1	provisional	missense	c.347	p.Q116R	0	NULL	"HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding"	-	no_errors
CNBD1	168975	broad.mit.edu	36	8	88318266	88318266	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	88318266	88318266	T	G	SNP	CNBD1	NM_173538	human	genbank	54_36p	1	provisional	missense	c.581	p.V194G	0.23	superfamily_cNMP_binding	"HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding"	-	no_errors
CNBD1	168975	broad.mit.edu	36	8	88435114	88435114	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	88435114	88435114	A	G	SNP	CNBD1	NM_173538	human	genbank	54_36p	1	provisional	silent	c.1287	p.E429	0.97	"HMMPfam_cNMP_binding,superfamily_cNMP_binding"	"HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding"	-	no_errors
DCAF4L2	138009	broad.mit.edu	36	8	88954868	88954868	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	88954868	88954868	C	G	SNP	WDR21C	NM_152418	human	genbank	54_36p	-1	validated	missense	c.448	p.A150P	0.85	superfamily_WD40_like	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	-	no_errors
DCAF4L2	138009	broad.mit.edu	36	8	88955315	88955320	+	Frame_Shift_Del	DEL	TTTCGT	-	TTTCGT	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	TTTCGT	TTTCGT	-	-	TTTCGT	TTTCGT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	88955315	88955320	TTTCGT	-	DEL	WDR21C	NM_152418	human	genbank	54_36p	-1	validated	frame_shift_del	c.1	p.M1fs	0.61	NULL	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	"(deletion:cds_exon[88954128,88955315], utr_exon[88955316,88955412])"	no_errors
MMP16	4325	broad.mit.edu	36	8	89122930	89122930	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	89122930	89122930	T	C	SNP	MMP16	NM_005941	human	genbank	54_36p	-1	reviewed	missense	c.1699	p.I567V	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PDP1	54704	broad.mit.edu	36	8	95005016	95005016	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	95005016	95005016	T	G	SNP	PPM2C	NM_018444	human	genbank	54_36p	1	reviewed	missense	c.1553	p.I518S	1	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332"	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,PatternScan_PP2C,HMMPfam_PP2C"	-	no_errors
CDH17	1015	broad.mit.edu	36	8	95255614	95255614	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	95255614	95255614	G	T	SNP	CDH17	NM_004063	human	genbank	54_36p	-1	reviewed	missense	c.475	p.P159T	0.77	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DPY19L4	286148	broad.mit.edu	36	8	95816070	95816070	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	95816070	95816070	G	A	SNP	DPY19L4	NM_181787	human	genbank	54_36p	1	validated	missense	c.164	p.G55D	1	NULL	HMMPfam_DUF2211	-	no_errors
PLEKHF2	79666	broad.mit.edu	36	8	96236166	96236166	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	96236166	96236166	G	A	SNP	PLEKHF2	NM_024613	human	genbank	54_36p	1	provisional	missense	c.718	p.D240N	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF"	-	no_errors
GDF6	392255	broad.mit.edu	36	8	97241878	97241878	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	97241878	97241878	G	A	SNP	GDF6	NM_001001557	human	genbank	54_36p	-1	reviewed	silent	c.219	p.D73	0	NULL	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
MTERFD1	51001	broad.mit.edu	36	8	97325405	97325405	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	97325405	97325405	T	A	SNP	MTERFD1	NM_015942	human	genbank	54_36p	-1	provisional	missense	c.977	p.N326I	1	"HMMPfam_mTERF,HMMSmart_SM00733"	"HMMPfam_mTERF,HMMSmart_SM00733"	-	no_errors
PTDSS1	9791	broad.mit.edu	36	8	97411676	97411676	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	97411676	97411676	C	A	SNP	PTDSS1	NM_014754	human	genbank	54_36p	1	provisional	missense	c.1233	p.H411Q	1	NULL	HMMPfam_PSS	-	no_errors
SDC2	6383	broad.mit.edu	36	8	97674951	97674951	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	97674951	97674951	T	G	SNP	SDC2	NM_002998	human	genbank	54_36p	1	reviewed	missense	c.128	p.V43G	1	HMMPfam_Syndecan	"HMMPfam_Syndecan,HMMSmart_SM00294,PatternScan_SYNDECAN"	-	no_errors
SDC2	6383	broad.mit.edu	36	8	97689805	97689805	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	97689805	97689805	G	A	SNP	SDC2	NM_002998	human	genbank	54_36p	1	reviewed	missense	c.373	p.E125K	0.37	HMMPfam_Syndecan	"HMMPfam_Syndecan,PatternScan_SYNDECAN,HMMSmart_SM00294"	-	no_errors
TSPYL5	85453	broad.mit.edu	36	8	98358556	98358556	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	98358556	98358556	C	G	SNP	TSPYL5	NM_033512	human	genbank	54_36p	-1	validated	silent	c.693	p.G231	0.98	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
HRSP12	10247	broad.mit.edu	36	8	99185949	99185949	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	99185949	99185949	C	G	SNP	HRSP12	NM_005836	human	genbank	54_36p	-1	validated	splice_site	c.296-1	e5-1	1	-	-	-	no_errors
POP1	10940	broad.mit.edu	36	8	99239036	99239036	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	99239036	99239036	G	A	SNP	POP1	NM_015029	human	genbank	54_36p	1	reviewed	silent	c.2436	p.L812	1	NULL	"HMMPfam_POP1,HMMPfam_POPLD"	-	no_errors
KCNS2	3788	broad.mit.edu	36	8	99510514	99510514	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	99510514	99510514	C	T	SNP	KCNS2	NM_020697	human	genbank	54_36p	1	provisional	silent	c.1131	p.Y377	0.98	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
OSR2	116039	broad.mit.edu	36	8	100030740	100030740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	100030740	100030740	G	A	SNP	OSR2	NM_053001	human	genbank	54_36p	1	validated	silent	c.384	p.E128	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
OSR2	116039	broad.mit.edu	36	8	100032059	100032059	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	100032059	100032059	G	T	SNP	OSR2	NM_053001	human	genbank	54_36p	1	validated	splice_site	c.657-1	e2-1	1	-	-	-	no_errors
VPS13B	157680	broad.mit.edu	36	8	100901489	100901489	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	100901489	100901489	T	A	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	missense	c.9032	p.V3011D	1	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
VPS13B	157680	broad.mit.edu	36	8	100935306	100935306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	100935306	100935306	C	T	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	missense	c.10588	p.R3530W	1	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
VPS13B	157680	broad.mit.edu	36	8	100935634	100935634	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	100935634	100935634	A	G	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	missense	c.10916	p.Y3639C	1	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
VPS13B	157680	broad.mit.edu	36	8	100956946	100956946	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	100956946	100956946	C	A	SNP	VPS13B	NM_017890	human	genbank	54_36p	1	reviewed	missense	c.11945	p.A3982D	1	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
RGS22	26166	broad.mit.edu	36	8	101068932	101068932	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	101068932	101068932	C	A	SNP	RGS22	NM_015668	human	genbank	54_36p	-1	validated	missense	c.3110	p.R1037L	1	"superfamily_Regulator of G-protein signaling RGS,HMMSmart_SM00315,HMMPfam_RGS"	"superfamily_Regulator of G-protein signaling RGS,HMMSmart_SM00315,HMMPfam_RGS"	-	no_errors
RGS22	26166	broad.mit.edu	36	8	101144951	101144951	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	101144951	101144951	A	T	SNP	RGS22	NM_015668	human	genbank	54_36p	-1	validated	nonsense	c.1221	p.Y407*	0.99	superfamily_Regulator of G-protein signaling RGS	"HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS"	-	no_errors
SPAG1	6674	broad.mit.edu	36	8	101322343	101322343	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	101322343	101322343	C	T	SNP	SPAG1	NM_003114	human	genbank	54_36p	1	reviewed	silent	c.2698	p.L900	1	NULL	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_Protein prenylyltransferase"	-	no_errors
RNF19A	25897	broad.mit.edu	36	8	101351375	101351375	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	101351375	101351375	A	T	SNP	RNF19A	NM_015435	human	genbank	54_36p	-1	reviewed	missense	c.926	p.I309K	1	"HMMSmart_SM00647,superfamily_RING/U-box"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_IBR,HMMSmart_SM00647"	-	no_errors
ZNF706	51123	broad.mit.edu	36	8	102283138	102283138	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	102283138	102283138	C	G	SNP	ZNF706	NM_001042510	human	genbank	54_36p	-1	validated	missense	c.8	p.R3P	1	HMMPfam_DUF1909	"HMMPfam_DUF1909,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
UBR5	51366	broad.mit.edu	36	8	103346627	103346627	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	103346627	103346627	T	A	SNP	UBR5	NM_015902	human	genbank	54_36p	-1	reviewed	missense	c.7478	p.D2493V	1	"superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	"HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
UBR5	51366	broad.mit.edu	36	8	103423938	103423938	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	103423938	103423938	T	C	SNP	UBR5	NM_015902	human	genbank	54_36p	-1	reviewed	missense	c.1037	p.K346R	1	NULL	"HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1"	-	no_errors
RIMS2	9699	broad.mit.edu	36	8	104997935	104997935	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	104997935	104997935	C	G	SNP	RIMS2	NM_001100117	human	genbank	54_36p	1	validated	missense	c.2030	p.P677R	1	"superfamily_PDZ domain-like,HMMSmart_SM00228"	"HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
RIMS2	9699	broad.mit.edu	36	8	105012785	105012785	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	105012785	105012785	T	C	SNP	RIMS2	NM_001100117	human	genbank	54_36p	1	validated	missense	c.2363	p.L788P	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
RIMS2	9699	broad.mit.edu	36	8	105042518	105042518	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	105042518	105042518	T	C	SNP	RIMS2	NM_001100117	human	genbank	54_36p	1	validated	silent	c.2751	p.D917	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger"	-	no_errors
TM7SF4	81501	broad.mit.edu	36	8	105430027	105430027	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	105430027	105430027	C	T	SNP	TM7SF4	NM_030788	human	genbank	54_36p	1	reviewed	missense	c.71	p.P24L	0.97	NULL	HMMPfam_DC_STAMP	-	no_errors
TM7SF4	81501	broad.mit.edu	36	8	105430719	105430719	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	105430719	105430719	G	C	SNP	TM7SF4	NM_030788	human	genbank	54_36p	1	reviewed	missense	c.763	p.D255H	1	HMMPfam_DC_STAMP	HMMPfam_DC_STAMP	-	no_errors
LRP12	29967	broad.mit.edu	36	8	105590452	105590452	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	105590452	105590452	G	C	SNP	LRP12	NM_013437	human	genbank	54_36p	-1	reviewed	missense	c.163	p.R55G	0.69	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
ZFPM2	23414	broad.mit.edu	36	8	106882755	106882755	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	8	106882755	106882755	C	G	SNP	ZFPM2	NM_012082	human	genbank	54_36p	1	reviewed	missense	c.1269	p.S423R	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFPM2	23414	broad.mit.edu	36	8	106884883	106884890	+	Frame_Shift_Del	DEL	AACTTTAT	-	AACTTTAT	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	AACTTTAT	AACTTTAT	-	-	AACTTTAT	AACTTTAT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	106884883	106884890	AACTTTAT	-	DEL	ZFPM2	NM_012082	human	genbank	54_36p	1	reviewed	frame_shift_del	c.3397_3404	p.F1134fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[106882451,106884942])"	no_errors
ANGPT1	284	broad.mit.edu	36	8	108417619	108417619	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	108417619	108417619	G	T	SNP	ANGPT1	NM_001146	human	genbank	54_36p	-1	reviewed	silent	c.510	p.T170	0.74	NULL	"HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
EIF3E	3646	broad.mit.edu	36	8	109309780	109309780	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	109309780	109309780	A	T	SNP	EIF3E	NM_001568	human	genbank	54_36p	-1	validated	missense	c.614	p.L205H	1	NULL	"HMMPfam_eIF3_N,HMMPfam_PCI,HMMSmart_SM00088,superfamily_Winged helix DNA-binding domain"	-	no_errors
TTC35	9694	broad.mit.edu	36	8	109551288	109551288	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	109551288	109551288	A	G	SNP	TTC35	NM_014673	human	genbank	54_36p	1	provisional	missense	c.421	p.I141V	1	superfamily_Prenyl_trans	"superfamily_Prenyl_trans,HMMPfam_TPR_2"	-	no_errors
NUDCD1	84955	broad.mit.edu	36	8	110362554	110362554	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	110362554	110362554	T	A	SNP	NUDCD1	NM_032869	human	genbank	54_36p	-1	validated	missense	c.847	p.T283S	1	"superfamily_HSP20-like chaperones,HMMPfam_CS"	"superfamily_HSP20-like chaperones,HMMPfam_CS"	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110466974	110466974	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	110466974	110466974	A	T	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	missense	c.508	p.T170S	1	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG"	"superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like"	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110520364	110520364	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	110520364	110520364	G	A	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	missense	c.3823	p.V1275M	0.62	"HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains"	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110524400	110524400	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	110524400	110524400	C	T	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	silent	c.4443	p.S1481	0.99	superfamily_Cupredoxins	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110526851	110526851	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	110526851	110526851	C	T	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	silent	c.5577	p.G1859	0.66	"HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains"	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110573368	110573368	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	110573368	110573368	T	G	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	nonsense	c.10205	p.L3402*	0.01	superfamily_Pectin lyase-like	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110604171	110604171	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	110604171	110604171	G	C	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	missense	c.12206	p.R4069T	1	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	-	no_errors
PKHD1L1	93035	broad.mit.edu	36	8	110604253	110604253	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	110604253	110604253	G	A	SNP	PKHD1L1	NM_177531	human	genbank	54_36p	1	validated	silent	c.12288	p.Q4096	0.95	NULL	"HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen"	-	no_errors
TRPS1	7227	broad.mit.edu	36	8	116499853	116499853	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	116499853	116499853	G	A	SNP	TRPS1	NM_014112	human	genbank	54_36p	-1	reviewed	missense	c.2704	p.R902C	1	superfamily_SSF57716	"HMMSmart_ZnF_C2H2,superfamily_SSF57716,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
TRPS1	7227	broad.mit.edu	36	8	116701055	116701055	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	116701055	116701055	G	A	SNP	TRPS1	NM_014112	human	genbank	54_36p	-1	reviewed	missense	c.445	p.P149S	1	NULL	"HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57716"	-	no_errors
RAD21	5885	broad.mit.edu	36	8	117938792	117938792	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	117938792	117938792	A	G	SNP	RAD21	NM_006265	human	genbank	54_36p	-1	reviewed	missense	c.583	p.S195P	1	NULL	"HMMPfam_Rad21_Rec8_N,HMMPfam_Rad21_Rec8"	-	no_errors
EXT1	2131	broad.mit.edu	36	8	118899870	118899870	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	118899870	118899870	A	C	SNP	EXT1	NM_000127	human	genbank	54_36p	-1	reviewed	missense	c.1617	p.I539M	0.99	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64"	"HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64"	-	no_errors
EXT1	2131	broad.mit.edu	36	8	119192014	119192014	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	119192014	119192014	C	T	SNP	EXT1	NM_000127	human	genbank	54_36p	-1	reviewed	silent	c.453	p.A151	1	HMMPfam_Exostosin	"HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases"	-	no_errors
COLEC10	10584	broad.mit.edu	36	8	120187264	120187264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	120187264	120187264	G	A	SNP	COLEC10	NM_006438	human	genbank	54_36p	1	reviewed	missense	c.487	p.V163M	1	"HMMSmart_CLECT,superfamily_C-type_lectin_fold"	"HMMPfam_Collagen,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
COLEC10	10584	broad.mit.edu	36	8	120187426	120187426	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	120187426	120187426	G	C	SNP	COLEC10	NM_006438	human	genbank	54_36p	1	reviewed	missense	c.649	p.E217Q	1	"HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold"	"HMMPfam_Lectin_C,HMMSmart_CLECT,HMMPfam_Collagen,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
TAF2	6873	broad.mit.edu	36	8	120878471	120878471	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	120878471	120878471	C	G	SNP	TAF2	NM_003184	human	genbank	54_36p	-1	reviewed	missense	c.1031	p.R344T	1	"HMMPfam_Peptidase_M1,superfamily_SSF55486"	"superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486"	-	no_errors
DEPDC6	64798	broad.mit.edu	36	8	120955374	120955374	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	120955374	120955374	C	G	SNP	DEPDC6	NM_022783	human	genbank	54_36p	1	validated	missense	c.107	p.T36S	1	superfamily_SSF46785	"superfamily_SSF46785,HMMPfam_DEP,HMMSmart_DEP,superfamily_PDZ,HMMSmart_PDZ"	-	no_errors
DEPDC6	64798	broad.mit.edu	36	8	121046796	121046796	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	121046796	121046796	G	A	SNP	DEPDC6	NM_022783	human	genbank	54_36p	1	validated	missense	c.569	p.C190Y	1	"HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785"	"HMMPfam_DEP,HMMSmart_DEP,HMMSmart_PDZ,superfamily_PDZ,superfamily_SSF46785"	-	no_errors
DEPDC6	64798	broad.mit.edu	36	8	121130995	121130995	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	121130995	121130995	G	T	SNP	DEPDC6	NM_022783	human	genbank	54_36p	1	validated	splice_site	c.1102-1	e9-1	1	-	-	-	no_errors
COL14A1	7373	broad.mit.edu	36	8	121312914	121312914	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	121312914	121312914	T	C	SNP	COL14A1	NM_021110	human	genbank	54_36p	1	validated	missense	c.2225	p.V742A	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
MRPL13	28998	broad.mit.edu	36	8	121501290	121501291	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	Broad454			Illumina GAIIx	8	121501290	121501291	GC	AA	DNP	MRPL13	NM_014078	human	genbank	54_36p	-1	reviewed	missense	c.376_375	p.LH125FY	1.000:0.980	"superfamily_Ribosomal protein L13,HMMPfam_Ribosomal_L13,PatternScan_RIBOSOMAL_L13"	"superfamily_Ribosomal protein L13,HMMPfam_Ribosomal_L13,PatternScan_RIBOSOMAL_L13"	-	no_errors
MTBP	27085	broad.mit.edu	36	8	121600187	121600187	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	121600187	121600187	T	C	SNP	MTBP	NM_022045	human	genbank	54_36p	1	provisional	silent	c.2559	p.C853	0.97	NULL	NULL	-	no_errors
ZHX2	22882	broad.mit.edu	36	8	124034733	124034733	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	124034733	124034733	G	C	SNP	ZHX2	NM_014943	human	genbank	54_36p	1	reviewed	missense	c.1802	p.G601A	0.04	NULL	"PatternScan_ZINC_FINGER_C2H2_1,PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
FAM83A	84985	broad.mit.edu	36	8	124264603	124264603	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	124264603	124264603	C	T	SNP	FAM83A	NM_032899	human	genbank	54_36p	1	validated	missense	c.326	p.A109V	0.04	HMMPfam_DUF1669	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
ATAD2	29028	broad.mit.edu	36	8	124419057	124419057	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	124419057	124419057	C	G	SNP	ATAD2	NM_014109	human	genbank	54_36p	-1	reviewed	missense	c.3040	p.D1014H	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	"HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
ATAD2	29028	broad.mit.edu	36	8	124430768	124430768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	124430768	124430768	G	T	SNP	ATAD2	NM_014109	human	genbank	54_36p	-1	reviewed	missense	c.1744	p.P582T	1	"HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
WDYHV1	55093	broad.mit.edu	36	8	124517878	124517878	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	124517878	124517878	A	T	SNP	WDYHV1	NM_018024	human	genbank	54_36p	1	provisional	missense	c.239	p.Y80F	1	HMMPfam_WDYHV	HMMPfam_WDYHV	-	no_errors
ANXA13	312	broad.mit.edu	36	8	124766071	124766071	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	124766071	124766071	T	C	SNP	ANXA13	NM_001003954	human	genbank	54_36p	-1	reviewed	missense	c.914	p.D305G	0.95	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
FER1L6	654463	broad.mit.edu	36	8	125176440	125176440	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	125176440	125176440	G	T	SNP	FER1L6	NM_001039112	human	genbank	54_36p	1	validated	missense	c.4675	p.D1559Y	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB"	-	no_errors
FER1L6	654463	broad.mit.edu	36	8	125184694	125184694	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	125184694	125184694	G	A	SNP	FER1L6	NM_001039112	human	genbank	54_36p	1	validated	missense	c.5252	p.R1751H	1	NULL	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
NDUFB9	4715	broad.mit.edu	36	8	125620702	125620702	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	125620702	125620702	G	T	SNP	NDUFB9	NM_005005	human	genbank	54_36p	1	validated	missense	c.94	p.V32F	0.01	HMMPfam_Complex1_LYR	HMMPfam_Complex1_LYR	-	no_errors
ZNF572	137209	broad.mit.edu	36	8	126058708	126058708	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	126058708	126058708	T	C	SNP	ZNF572	NM_152412	human	genbank	54_36p	1	validated	silent	c.1017	p.R339	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF572	137209	broad.mit.edu	36	8	126058941	126058941	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	126058941	126058941	G	C	SNP	ZNF572	NM_152412	human	genbank	54_36p	1	validated	missense	c.1250	p.C417S	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
SQLE	6713	broad.mit.edu	36	8	126080835	126080835	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	8	126080835	126080835	T	A	SNP	SQLE	ENST00000265896	human	ensembl	54_36p	1	known	silent	c.9	p.T3	1	NULL	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,HMMPfam_SE"	-	no_errors
KIAA0196	9897	broad.mit.edu	36	8	126160301	126160301	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	126160301	126160301	C	A	SNP	KIAA0196	NM_014846	human	genbank	54_36p	-1	validated	missense	c.572	p.R191L	1	HMMPfam_Strumpellin	HMMPfam_Strumpellin	-	no_errors
FAM84B	157638	broad.mit.edu	36	8	127637931	127637931	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	127637931	127637931	G	T	SNP	FAM84B	NM_174911	human	genbank	54_36p	-1	provisional	missense	c.886	p.P296T	0.09	NULL	NULL	-	no_errors
MYC	4609	broad.mit.edu	36	8	128820338	128820338	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	128820338	128820338	C	T	SNP	MYC	NM_002467	human	genbank	54_36p	1	reviewed	silent	c.693	p.F231	0.99	HMMPfam_Myc_N	"HMMPfam_Myc_N,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353,HMMPfam_Myc-LZ"	-	no_errors
ASAP1	50807	broad.mit.edu	36	8	131142388	131142388	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	131142388	131142388	T	C	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	silent	c.2811	p.G937	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
ASAP1	50807	broad.mit.edu	36	8	131197069	131197069	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	131197069	131197069	T	C	SNP	ASAP1	NM_018482	human	genbank	54_36p	-1	validated	missense	c.2159	p.D720G	1	NULL	"HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SSF50729"	-	no_errors
EFR3A	23167	broad.mit.edu	36	8	133084700	133084700	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	133084700	133084700	G	A	SNP	EFR3A	NM_015137	human	genbank	54_36p	1	validated	silent	c.2346	p.L782	1	NULL	superfamily_ARM repeat	-	no_errors
KCNQ3	3786	broad.mit.edu	36	8	133213670	133213670	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	133213670	133213670	G	C	SNP	KCNQ3	NM_004519	human	genbank	54_36p	-1	reviewed	missense	c.1823	p.P608R	1	HMMPfam_KCNQ_channel	"superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
LRRC6	23639	broad.mit.edu	36	8	133706813	133706813	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	133706813	133706813	G	T	SNP	LRRC6	NM_012472	human	genbank	54_36p	-1	provisional	missense	c.723	p.D241E	0	NULL	"superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00446,HMMPfam_CS"	-	no_errors
TG	7038	broad.mit.edu	36	8	133969910	133969910	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	8	133969910	133969910	T	C	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	silent	c.2676	p.H892	0.01	"superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00211"	"superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2"	-	no_errors
TG	7038	broad.mit.edu	36	8	134004768	134004768	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	134004768	134004768	T	C	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	missense	c.4532	p.V1511A	1	superfamily_Thyroglobulin type-1 domain	"HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like"	-	no_errors
TG	7038	broad.mit.edu	36	8	134103548	134103548	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	134103548	134103548	G	A	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	missense	c.7007	p.R2336Q	1	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like"	-	no_errors
TG	7038	broad.mit.edu	36	8	134103563	134103563	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	134103563	134103563	G	T	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	missense	c.7022	p.G2341V	1	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like"	-	no_errors
TG	7038	broad.mit.edu	36	8	134111322	134111322	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	8	134111322	134111322	C	T	SNP	TG	NM_003235	human	genbank	54_36p	1	validated	nonsense	c.7111	p.R2371*	0.02	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like"	-	no_errors
SLA	6503	broad.mit.edu	36	8	134141616	134141616	+	5'UTR	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	134141616	134141616	G	A	SNP	SLA	NM_001045556	human	genbank	54_36p	-1	validated	5_prime_untranslated_region	c.-29	NULL	0	-	-	-	no_errors
NDRG1	10397	broad.mit.edu	36	8	134329302	134329302	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	134329302	134329302	C	T	SNP	NDRG1	NM_006096	human	genbank	54_36p	-1	reviewed	missense	c.805	p.V269M	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Ndr"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Ndr,PatternScan_PHOSPHOPANTETHEINE"	-	no_errors
NDRG1	10397	broad.mit.edu	36	8	134365720	134365720	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	134365720	134365720	T	C	SNP	NDRG1	NM_006096	human	genbank	54_36p	-1	reviewed	missense	c.17	p.Q6R	1	NULL	"HMMPfam_Ndr,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases"	-	no_errors
FAM135B	51059	broad.mit.edu	36	8	139214033	139214033	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	139214033	139214033	G	T	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.4206	p.L1402	1	NULL	"superfamily_alpha/beta-Hydrolases,HMMPfam_DUF676"	-	no_errors
FAM135B	51059	broad.mit.edu	36	8	139214186	139214186	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	139214186	139214186	G	T	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.4053	p.G1351	1	NULL	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	-	no_errors
FAM135B	51059	broad.mit.edu	36	8	139232705	139232705	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139232705	139232705	G	A	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.3195	p.P1065	1	NULL	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	-	no_errors
FAM135B	51059	broad.mit.edu	36	8	139234445	139234445	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139234445	139234445	A	G	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	silent	c.1455	p.N485	0	NULL	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	-	no_errors
FAM135B	51059	broad.mit.edu	36	8	139449375	139449375	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139449375	139449375	C	A	SNP	FAM135B	NM_015912	human	genbank	54_36p	-1	validated	missense	c.34	p.V12L	1	NULL	"HMMPfam_DUF676,superfamily_alpha/beta-Hydrolases"	-	no_errors
COL22A1	169044	broad.mit.edu	36	8	139675519	139675519	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139675519	139675519	C	T	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.4538	p.R1513Q	0.96	HMMPfam_Collagen	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
COL22A1	169044	broad.mit.edu	36	8	139687806	139687806	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139687806	139687806	C	T	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	silent	c.4104	p.P1368	1	HMMPfam_Collagen	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL22A1	169044	broad.mit.edu	36	8	139757998	139757998	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139757998	139757998	C	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	silent	c.3135	p.G1045	0.2	NULL	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL22A1	169044	broad.mit.edu	36	8	139766688	139766688	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	139766688	139766688	T	C	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.2912	p.D971G	0.27	HMMPfam_Collagen	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL22A1	169044	broad.mit.edu	36	8	139884330	139884330	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139884330	139884330	G	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	silent	c.1524	p.G508	0.02	HMMPfam_Collagen	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL22A1	169044	broad.mit.edu	36	8	139959187	139959187	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	139959187	139959187	G	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	missense	c.646	p.R216C	0.99	"HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
COL22A1	169044	broad.mit.edu	36	8	139959299	139959299	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	139959299	139959299	G	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	silent	c.534	p.G178	0.98	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like"	-	no_errors
KCNK9	51305	broad.mit.edu	36	8	140699945	140699945	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	140699945	140699945	G	A	SNP	KCNK9	NM_016601	human	genbank	54_36p	-1	reviewed	missense	c.863	p.A288V	0.98	superfamily_SSF81324	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	-	no_errors
TRAPPC9	83696	broad.mit.edu	36	8	141103289	141103289	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	141103289	141103289	G	C	SNP	TRAPPC9	NM_031466	human	genbank	54_36p	-1	provisional	missense	c.2920	p.L974V	1	HMMPfam_Trs120	HMMPfam_Trs120	-	no_errors
CHRAC1	54108	broad.mit.edu	36	8	141590861	141590861	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	141590861	141590861	C	A	SNP	CHRAC1	NM_017444	human	genbank	54_36p	1	validated	silent	c.81	p.I27	1	"HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold"	"HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold"	-	no_errors
PTK2	5747	broad.mit.edu	36	8	141840502	141840502	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	141840502	141840502	G	A	SNP	PTK2	NM_005607	human	genbank	54_36p	-1	reviewed	nonsense	c.1342	p.R448*	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FERM_2,HMMPfam_Focal_AT,superfamily_Focal_AT"	-	no_errors
SLC45A4	57210	broad.mit.edu	36	8	142296426	142296426	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	142296426	142296426	G	A	SNP	SLC45A4	NM_001080431	human	genbank	54_36p	-1	provisional	silent	c.1521	p.V507	0.99	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SLC45A4	57210	broad.mit.edu	36	8	142297552	142297552	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	142297552	142297552	C	T	SNP	SLC45A4	NM_001080431	human	genbank	54_36p	-1	provisional	missense	c.1216	p.D406N	1	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SLC45A4	57210	broad.mit.edu	36	8	142297957	142297957	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	142297957	142297957	G	C	SNP	SLC45A4	NM_001080431	human	genbank	54_36p	-1	provisional	missense	c.811	p.P271A	0.96	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
GPR20	2843	broad.mit.edu	36	8	142436438	142436439	+	Frame_Shift_Del	DEL	GG	-	GG	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	142436438	142436439	GG	-	DEL	GPR20	NM_005293	human	genbank	54_36p	-1	validated	frame_shift_del	c.768_767	p.P256fs	0.996:1.000	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[142436129,142437205])"	no_errors
FLJ43860	389690	broad.mit.edu	36	8	142514506	142514506	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	142514506	142514506	C	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.3581	p.C1194Y	0.75	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	pseudogene
FLJ43860	389690	broad.mit.edu	36	8	142515252	142515252	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	142515252	142515252	G	T	SNP	FLJ43860	NM_207414	human	genbank	54_36p	-1	validated	missense	c.3498	p.H1166Q	0.84	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	pseudogene
TSNARE1	203062	broad.mit.edu	36	8	143411044	143411044	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	143411044	143411044	G	A	SNP	TSNARE1	NM_145003	human	genbank	54_36p	-1	validated	silent	c.801	p.N267	0.55	superfamily_t-snare	"superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE"	-	no_errors
TSNARE1	203062	broad.mit.edu	36	8	143423241	143423241	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	143423241	143423241	C	T	SNP	TSNARE1	NM_145003	human	genbank	54_36p	-1	validated	silent	c.738	p.P246	0.01	NULL	"HMMPfam_SNARE,HMMSmart_t_SNARE,superfamily_t-snare"	-	no_errors
BAI1	575	broad.mit.edu	36	8	143566730	143566730	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	143566730	143566730	T	C	SNP	BAI1	NM_001702	human	genbank	54_36p	1	reviewed	missense	c.2312	p.L771P	1	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
BAI1	575	broad.mit.edu	36	8	143567763	143567763	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	143567763	143567763	C	T	SNP	BAI1	NM_001702	human	genbank	54_36p	1	reviewed	missense	c.2593	p.R865C	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008"	-	no_errors
BAI1	575	broad.mit.edu	36	8	143621771	143621771	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	143621771	143621771	G	T	SNP	BAI1	NM_001702	human	genbank	54_36p	1	reviewed	silent	c.4419	p.R1473	1	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_HRM,HMMSmart_SM00008"	-	no_errors
SLURP1	57152	broad.mit.edu	36	8	143819598	143819600	+	In_Frame_Del	DEL	AGA	-	AGA	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	AGA	AGA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	143819598	143819600	AGA	-	DEL	SLURP1	NM_020427	human	genbank	54_36p	-1	reviewed	in_frame_del	c.277_275	p.F92in_frame_del	0.280:0.107:0.004	"superfamily_SSF57302,HMMSmart_LU,HMMPfam_UPAR_LY6"	"PatternScan_LY6_UPAR,superfamily_SSF57302,HMMSmart_LU,HMMPfam_UPAR_LY6"	"(deletion:cds_exon[143819563,143819696])"	no_errors
CYP11B1	1584	broad.mit.edu	36	8	143953509	143953509	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	143953509	143953509	G	C	SNP	CYP11B1	NM_000497	human	genbank	54_36p	-1	reviewed	missense	c.1264	p.R422G	0.98	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP11B1	1584	broad.mit.edu	36	8	143954132	143954132	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	143954132	143954132	C	A	SNP	CYP11B1	NM_000497	human	genbank	54_36p	-1	reviewed	missense	c.1119	p.L373F	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP11B1	1584	broad.mit.edu	36	8	143957520	143957520	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	143957520	143957520	G	T	SNP	CYP11B1	NM_000497	human	genbank	54_36p	-1	reviewed	missense	c.325	p.H109N	0	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP11B2	1585	broad.mit.edu	36	8	143991819	143991819	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	143991819	143991819	G	A	SNP	CYP11B2	NM_000498	human	genbank	54_36p	-1	reviewed	silent	c.1005	p.D335	0.17	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
C8orf31	286122	broad.mit.edu	36	8	144196018	144196018	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	144196018	144196018	C	G	SNP	C8orf31	NM_173687	human	genbank	54_36p	1	predicted	silent	c.150	p.P50	0	NULL	NULL	-	no_errors
C8orf73	642475	broad.mit.edu	36	8	144723877	144723877	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	144723877	144723877	G	C	SNP	C8orf73	NM_001100878	human	genbank	54_36p	-1	validated	missense	c.814	p.Q272E	1	NULL	superfamily_ARM-type_fold	-	no_errors
NAPRT1	93100	broad.mit.edu	36	8	144728546	144728546	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	144728546	144728546	G	C	SNP	NAPRT1	NM_145201	human	genbank	54_36p	-1	validated	silent	c.1332	p.A444	0.16	NULL	"superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like,HMMPfam_NAPRTase"	-	no_errors
PYCRL	65263	broad.mit.edu	36	8	144759070	144759096	+	Splice_Site	DEL	GGCTGCTCGCAGCCCGCCCTGCTCCAG	-	GGCTGCTCGCAGCCCGCCCTGCTCCAG	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	GGCTGCTCGCAGCCCGCCCTGCTCCAG	GGCTGCTCGCAGCCCGCCCTGCTCCAG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	144759070	144759096	GGCTGCTCGCAGCCCGCCCTGCTCCAG	-	DEL	PYCRL	ENST00000377579	human	ensembl	54_36p	-1	known	splice_site_del	c.780+4_780+1	e7-1	0.415:0.561:0.398:0.322:0.998:1.000:0.990:1.000:0.997:0.974:0.983:0.929:0.890:0.975:0.973:0.244:0.996:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996	-	-	"(deletion:intron[144758271,144759093], cds_exon[144759094,144759195])"	no_errors
SCRIB	23513	broad.mit.edu	36	8	144963074	144963074	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	144963074	144963074	A	T	SNP	SCRIB	NM_182706	human	genbank	54_36p	-1	validated	missense	c.1808	p.I603N	1	NULL	"superfamily_RNI-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
SCRIB	23513	broad.mit.edu	36	8	144967875	144967875	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	144967875	144967875	A	C	SNP	SCRIB	NM_182706	human	genbank	54_36p	-1	validated	missense	c.366	p.D122E	1	superfamily_RNI-like	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like"	-	no_errors
EPPK1	83481	broad.mit.edu	36	8	145012717	145012717	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145012717	145012717	C	T	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	silent	c.6618	p.V2206	0.79	"superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	"HMMSmart_SM00250,superfamily_Plakin repeat,HMMPfam_Plectin"	-	no_stop_codon:bad_bp_length_for_coding_region
EPPK1	83481	broad.mit.edu	36	8	145014470	145014470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145014470	145014470	C	G	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	missense	c.4865	p.R1622P	0.23	"HMMSmart_SM00250,superfamily_Plakin repeat"	"HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat"	-	no_stop_codon:bad_bp_length_for_coding_region
PLEC	5339	broad.mit.edu	36	8	145064522	145064522	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145064522	145064522	G	A	SNP	PLEC1	NM_201380	human	genbank	54_36p	-1	reviewed	missense	c.11866	p.P3956S	0.99	"superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	"HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	-	no_errors
PLEC	5339	broad.mit.edu	36	8	145067627	145067627	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	145067627	145067627	G	C	SNP	PLEC1	NM_201380	human	genbank	54_36p	-1	reviewed	missense	c.8761	p.Q2921E	0.82	"HMMSmart_SM00250,superfamily_Plakin repeat"	"HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat"	-	no_errors
PLEC	5339	broad.mit.edu	36	8	145078380	145078380	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145078380	145078380	C	T	SNP	PLEC1	NM_201380	human	genbank	54_36p	-1	reviewed	missense	c.2399	p.R800Q	0.99	"HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_Plectin,HMMSmart_SM00250,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat"	-	no_errors
PARP10	84875	broad.mit.edu	36	8	145130505	145130505	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145130505	145130505	C	G	SNP	PARP10	NM_032789	human	genbank	54_36p	-1	validated	missense	c.1541	p.C514S	0.26	NULL	"HMMSmart_UIM,superfamily_SSF56399,HMMPfam_PARP"	-	no_errors
PARP10	84875	broad.mit.edu	36	8	145130869	145130869	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	145130869	145130869	A	C	SNP	PARP10	NM_032789	human	genbank	54_36p	-1	validated	missense	c.1289	p.V430G	0.01	NULL	"HMMSmart_UIM,HMMPfam_PARP,superfamily_SSF56399"	-	no_errors
PARP10	84875	broad.mit.edu	36	8	145132235	145132235	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145132235	145132235	C	T	SNP	PARP10	NM_032789	human	genbank	54_36p	-1	validated	missense	c.157	p.V53I	0.04	NULL	"HMMSmart_UIM,HMMPfam_PARP,superfamily_SSF56399"	-	no_errors
SPATC1	375686	broad.mit.edu	36	8	145167078	145167078	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	145167078	145167078	C	T	SNP	SPATC1	NM_198572	human	genbank	54_36p	1	validated	silent	c.219	p.T73	0.02	NULL	NULL	-	no_errors
OPLAH	26873	broad.mit.edu	36	8	145186837	145186837	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145186837	145186837	G	A	SNP	OPLAH	ENST00000360660	human	ensembl	54_36p	-1	known	silent	c.87	p.H29	0.5	HMMPfam_Hydant_A_N	"HMMPfam_Hydant_A_N,HMMPfam_Hydantoinase_A,HMMPfam_Hydantoinase_B"	-	no_errors
SHARPIN	81858	broad.mit.edu	36	8	145225878	145225878	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145225878	145225878	C	T	SNP	SHARPIN	NM_030974	human	genbank	54_36p	-1	validated	nonsense	c.1055	p.W352*	1	"superfamily_NZF domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	"superfamily_Ubiquitin-like,superfamily_NZF domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	-	no_errors
SLC39A4	55630	broad.mit.edu	36	8	145608817	145608817	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145608817	145608817	G	A	SNP	SLC39A4	NM_130849	human	genbank	54_36p	-1	reviewed	silent	c.1857	p.L619	1	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
NFKBIL2	4796	broad.mit.edu	36	8	145632078	145632078	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145632078	145632078	C	T	SNP	NFKBIL2	NM_013432	human	genbank	54_36p	-1	reviewed	missense	c.2069	p.R690H	0.01	NULL	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
CYHR1	50626	broad.mit.edu	36	8	145660466	145660467	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	8	145660466	145660467	-	C	INS	CYHR1	NM_032687	human	genbank	54_36p	-1	validated	frame_shift_ins	c.431_430	p.A144fs	0.013:0.010	NULL	NULL	-	no_errors
CYHR1	50626	broad.mit.edu	36	8	145660554	145660554	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145660554	145660554	C	T	SNP	CYHR1	NM_032687	human	genbank	54_36p	-1	validated	missense	c.343	p.A115T	1	NULL	NULL	-	no_errors
KIFC2	90990	broad.mit.edu	36	8	145665712	145665712	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	145665712	145665712	A	C	SNP	KIFC2	NM_145754	human	genbank	54_36p	1	provisional	silent	c.1254	p.P418	0.93	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin"	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
RECQL4	9401	broad.mit.edu	36	8	145708862	145708862	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	145708862	145708862	G	C	SNP	RECQL4	NM_004260	human	genbank	54_36p	-1	validated	missense	c.2857	p.P953A	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF7	7553	broad.mit.edu	36	8	146038292	146038292	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	146038292	146038292	G	T	SNP	ZNF7	NM_003416	human	genbank	54_36p	1	validated	missense	c.996	p.R332S	0.96	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF7	7553	broad.mit.edu	36	8	146038866	146038866	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	146038866	146038866	C	T	SNP	ZNF7	NM_003416	human	genbank	54_36p	1	validated	missense	c.1570	p.P524S	0.97	superfamily_SSF57667	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF250	58500	broad.mit.edu	36	8	146078081	146078081	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	8	146078081	146078081	A	C	SNP	ZNF250	NM_001109689	human	genbank	54_36p	-1	validated	missense	c.1291	p.S431A	0.01	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF16	7564	broad.mit.edu	36	8	146128093	146128093	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	146128093	146128093	C	A	SNP	ZNF16	NM_001029976	human	genbank	54_36p	-1	reviewed	missense	c.884	p.C295F	0.24	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF16	7564	broad.mit.edu	36	8	146128165	146128165	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	146128165	146128165	C	G	SNP	ZNF16	NM_001029976	human	genbank	54_36p	-1	reviewed	missense	c.812	p.G271A	0.84	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CBWD1	55871	broad.mit.edu	36	9	168930	168930	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	168930	168930	G	C	SNP	CBWD1	NM_018491	human	genbank	54_36p	-1	validated	missense	c.40	p.P14A	0.3	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Hypothetical protein YjiA C-terminal domain"	-	no_errors
DOCK8	81704	broad.mit.edu	36	9	453545	453545	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	453545	453545	C	T	SNP	DOCK8	NM_203447	human	genbank	54_36p	1	validated	missense	c.5893	p.R1965C	1	HMMPfam_Ded_cyto	HMMPfam_Ded_cyto	-	no_errors
KANK1	23189	broad.mit.edu	36	9	702652	702652	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	702652	702652	G	A	SNP	KANK1	NM_015158	human	genbank	54_36p	1	reviewed	missense	c.1886	p.G629D	0.98	superfamily_ANK	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
DMRT1	1761	broad.mit.edu	36	9	884144	884144	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	884144	884144	T	A	SNP	DMRT1	NM_021951	human	genbank	54_36p	1	reviewed	silent	c.771	p.L257	0.97	NULL	"superfamily_Cysteine-rich DNA binding domain (DM domain),HMMPfam_DM,HMMSmart_SM00301,PatternScan_DM_1"	-	no_errors
DMRT3	58524	broad.mit.edu	36	9	980347	980347	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	980347	980347	T	A	SNP	DMRT3	NM_021240	human	genbank	54_36p	1	validated	missense	c.761	p.V254E	1	HMMPfam_DMA	"superfamily_DM_DNA_bd,HMMPfam_DM,HMMSmart_DM,PatternScan_DM_1,HMMPfam_DMA"	-	no_errors
VLDLR	7436	broad.mit.edu	36	9	2635614	2635614	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	2635614	2635614	C	T	SNP	VLDLR	NM_003383	human	genbank	54_36p	1	validated	silent	c.1353	p.I451	1	superfamily_YWTD domain	###############################################################################################################################################################################################################################################################	-	no_errors
RFX3	5991	broad.mit.edu	36	9	3291562	3291562	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	3291562	3291562	G	C	SNP	RFX3	NM_134428	human	genbank	54_36p	-1	reviewed	missense	c.533	p.S178C	1	HMMPfam_RFX_DNA_binding	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_Winged helix DNA-binding domain"	-	no_errors
RFX3	5991	broad.mit.edu	36	9	3320481	3320481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	3320481	3320481	C	T	SNP	RFX3	NM_134428	human	genbank	54_36p	-1	reviewed	missense	c.252	p.M84I	1	HMMPfam_RFX1_trans_act	"HMMPfam_RFX_DNA_binding,HMMPfam_RFX1_trans_act,superfamily_Winged helix DNA-binding domain"	-	no_errors
GLIS3	169792	broad.mit.edu	36	9	4107947	4107947	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	4107947	4107947	A	C	SNP	GLIS3	NM_001042413	human	genbank	54_36p	-1	reviewed	missense	c.1531	p.Y511D	1	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
AK3	50808	broad.mit.edu	36	9	4708447	4708447	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	9	4708447	4708447	G	C	SNP	AK3	NM_016282	human	genbank	54_36p	-1	validated	missense	c.535	p.Q179E	1	"superfamily_SSF52540,HMMPfam_ADK"	"superfamily_SSF52540,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE,superfamily_Adenylate_kinase_Znf_lid,HMMPfam_ADK_lid"	-	no_errors
AK3	50808	broad.mit.edu	36	9	4712564	4712564	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	4712564	4712564	C	G	SNP	AK3	NM_016282	human	genbank	54_36p	-1	validated	missense	c.213	p.M71I	1	"HMMPfam_ADK,superfamily_SSF52540"	"HMMPfam_ADK,PatternScan_ADENYLATE_KINASE,HMMPfam_ADK_lid,superfamily_Adenylate_kinase_Znf_lid,superfamily_SSF52540"	-	no_errors
JAK2	3717	broad.mit.edu	36	9	5055041	5055041	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	5055041	5055041	G	C	SNP	JAK2	NM_004972	human	genbank	54_36p	1	reviewed	splice_site	c.1214+1	e7+1	1	-	-	-	no_errors
ERMP1	79956	broad.mit.edu	36	9	5791200	5791200	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	5791200	5791200	C	G	SNP	ERMP1	NM_024896	human	genbank	54_36p	-1	validated	silent	c.2043	p.P681	0.82	NULL	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28"	-	no_errors
KIAA2026	158358	broad.mit.edu	36	9	5913129	5913129	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	5913129	5913129	C	T	SNP	KIAA2026	NM_001017969	human	genbank	54_36p	-1	validated	missense	c.2867	p.S956N	1	NULL	superfamily_Bromodomain	-	no_errors
RANBP6	26953	broad.mit.edu	36	9	6003873	6003873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	6003873	6003873	C	T	SNP	RANBP6	NM_012416	human	genbank	54_36p	-1	validated	missense	c.1735	p.E579K	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_HEAT"	-	no_errors
GLDC	2731	broad.mit.edu	36	9	6544727	6544736	+	Frame_Shift_Del	DEL	GAAGATTTAG	-	GAAGATTTAG	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	GAAGATTTAG	GAAGATTTAG	-	-	GAAGATTTAG	GAAGATTTAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	6544727	6544736	GAAGATTTAG	-	DEL	GLDC	NM_000170	human	genbank	54_36p	-1	validated	frame_shift_del	c.2257_2248	p.L750fs	1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.991:1.000:1.000	superfamily_PyrdxlP-dep_Trfase_major	"HMMPfam_GDC-P,superfamily_PyrdxlP-dep_Trfase_major"	"(deletion:cds_exon[6544669,6544781])"	no_errors
KDM4C	23081	broad.mit.edu	36	9	7039128	7039128	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	7039128	7039128	A	T	SNP	JMJD2C	NM_015061	human	genbank	54_36p	1	reviewed	missense	c.2352	p.E784D	1	NULL	"HMMSmart_SM00545,HMMPfam_JmjN,HMMSmart_SM00558,HMMPfam_JmjC,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT"	-	no_errors
KDM4C	23081	broad.mit.edu	36	9	7159927	7159927	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	7159927	7159927	G	C	SNP	JMJD2C	ENST00000381306	human	ensembl	54_36p	1	known	missense	c.3031	p.V1011L	0	NULL	"HMMSmart_PHD,HMMSmart_TUDOR,HMMSmart_JmjC,HMMPfam_JmjN,HMMSmart_JmjN,HMMPfam_JmjC,superfamily_SSF63748"	-	no_errors
PTPRD	5789	broad.mit.edu	36	9	8321723	8321723	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	8321723	8321723	C	T	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	missense	c.5393	p.R1798Q	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRD	5789	broad.mit.edu	36	9	8475897	8475897	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	8475897	8475897	G	A	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	missense	c.2920	p.P974S	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRD	5789	broad.mit.edu	36	9	8487241	8487241	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	8487241	8487241	C	A	SNP	PTPRD	NM_002839	human	genbank	54_36p	-1	reviewed	splice_site	c.2349+1	e15+1	1	-	-	-	no_errors
C9orf150	286343	broad.mit.edu	36	9	12765880	12765880	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	12765880	12765880	T	G	SNP	C9orf150	NM_203403	human	genbank	54_36p	1	validated	missense	c.166	p.C56G	0.6	NULL	NULL	-	no_errors
MPDZ	8777	broad.mit.edu	36	9	13178816	13178816	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	13178816	13178816	C	A	SNP	MPDZ	NM_003829	human	genbank	54_36p	-1	validated	silent	c.2331	p.G777	0.92	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"HMMPfam_L27_2,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
MPDZ	8777	broad.mit.edu	36	9	13196068	13196068	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	13196068	13196068	T	C	SNP	MPDZ	NM_003829	human	genbank	54_36p	-1	validated	missense	c.1321	p.N441D	1	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain"	-	no_errors
MPDZ	8777	broad.mit.edu	36	9	13214467	13214467	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	13214467	13214467	C	A	SNP	MPDZ	NM_003829	human	genbank	54_36p	-1	validated	missense	c.299	p.G100V	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain"	-	no_errors
MPDZ	8777	broad.mit.edu	36	9	13214504	13214504	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	13214504	13214504	G	C	SNP	MPDZ	NM_003829	human	genbank	54_36p	-1	validated	missense	c.262	p.L88V	0.06	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain"	-	no_errors
FREM1	158326	broad.mit.edu	36	9	14832569	14832569	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	14832569	14832569	C	G	SNP	FREM1	NM_144966	human	genbank	54_36p	-1	validated	missense	c.1483	p.V495L	1	NULL	"superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	-	no_errors
FREM1	158326	broad.mit.edu	36	9	14841551	14841551	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	14841551	14841551	G	C	SNP	FREM1	NM_144966	human	genbank	54_36p	-1	validated	missense	c.883	p.P295A	1	NULL	"HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Cadherin-like,superfamily_C-type lectin-like,PatternScan_SPASE_I_1"	-	no_errors
TTC39B	158219	broad.mit.edu	36	9	15215947	15215947	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	15215947	15215947	C	G	SNP	TTC39B	NM_152574	human	genbank	54_36p	-1	provisional	silent	c.141	p.A47	0	NULL	"HMMPfam_Deme6,superfamily_TPR-like,HMMSmart_SM00028"	-	no_errors
ADAMTSL1	92949	broad.mit.edu	36	9	18494910	18494910	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	18494910	18494910	C	T	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	1	validated	silent	c.147	p.C49	1	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC"	-	no_errors
ADAMTSL1	92949	broad.mit.edu	36	9	18564169	18564169	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	9	18564169	18564169	G	A	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	1	validated	missense	c.379	p.G127R	1	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
ADAMTSL1	92949	broad.mit.edu	36	9	18766831	18766831	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	18766831	18766831	G	T	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	1	validated	missense	c.2604	p.K868N	0.45	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
ADAMTSL1	92949	broad.mit.edu	36	9	18767219	18767219	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	18767219	18767219	C	A	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	1	validated	missense	c.2992	p.Q998K	0.98	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
ADAMTSL1	92949	broad.mit.edu	36	9	18896802	18896802	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	18896802	18896802	G	T	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	1	validated	missense	c.5074	p.V1692L	1	"HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
HAUS6	54801	broad.mit.edu	36	9	19048102	19048102	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	19048102	19048102	T	A	SNP	FAM29A	NM_017645	human	genbank	54_36p	-1	provisional	missense	c.2663	p.H888L	0.01	NULL	NULL	-	no_errors
HAUS6	54801	broad.mit.edu	36	9	19053008	19053008	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	19053008	19053008	C	T	SNP	FAM29A	NM_017645	human	genbank	54_36p	-1	provisional	missense	c.1627	p.E543K	1	NULL	NULL	-	no_errors
DENND4C	55667	broad.mit.edu	36	9	19336478	19336478	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	19336478	19336478	T	G	SNP	DENND4C	NM_017925	human	genbank	54_36p	1	provisional	missense	c.2856	p.I952M	0.01	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_PPR"	-	no_errors
SLC24A2	25769	broad.mit.edu	36	9	19506389	19506389	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	19506389	19506389	G	A	SNP	SLC24A2	NM_020344	human	genbank	54_36p	-1	provisional	missense	c.1748	p.P583L	1	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
KIAA1797	54914	broad.mit.edu	36	9	20730325	20730325	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	20730325	20730325	T	C	SNP	KIAA1797	NM_017794	human	genbank	54_36p	1	validated	silent	c.378	p.S126	0	NULL	superfamily_ARM-type_fold	-	no_errors
KIAA1797	54914	broad.mit.edu	36	9	20864701	20864701	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	20864701	20864701	C	G	SNP	KIAA1797	NM_017794	human	genbank	54_36p	1	validated	missense	c.2212	p.P738A	0	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
KIAA1797	54914	broad.mit.edu	36	9	20875120	20875120	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	20875120	20875120	T	A	SNP	KIAA1797	NM_017794	human	genbank	54_36p	1	validated	missense	c.2516	p.F839Y	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
KIAA1797	100133636	broad.mit.edu	36	9	20913752	20913752	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	20913752	20913752	T	A	SNP	LOC100133636	XM_001716178	human	genbank	54_36p	-1	model	nonsense	c.1345	p.R449*	0.91	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
KIAA1797	54914	broad.mit.edu	36	9	20943038	20943038	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	20943038	20943038	G	A	SNP	KIAA1797	NM_017794	human	genbank	54_36p	1	validated	missense	c.4106	p.G1369D	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
IFNW1	3467	broad.mit.edu	36	9	21131017	21131017	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	21131017	21131017	G	A	SNP	IFNW1	NM_002177	human	genbank	54_36p	-1	provisional	silent	c.553	p.L185	0	"HMMPfam_Interferon,superfamily_4_helix_cytokine"	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D"	-	no_errors
IFNA4	3441	broad.mit.edu	36	9	21177176	21177176	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	21177176	21177176	G	A	SNP	IFNA4	NM_021068	human	genbank	54_36p	-1	validated	silent	c.355	p.L119	0.07	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd"	"HMMPfam_Interferon,superfamily_4_helix_cytokine,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D"	-	no_errors
KLHL9	55958	broad.mit.edu	36	9	21323629	21323629	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	21323629	21323629	A	G	SNP	KLHL9	NM_018847	human	genbank	54_36p	-1	validated	silent	c.1230	p.A410	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	-	no_errors
KLHL9	55958	broad.mit.edu	36	9	21323996	21323996	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	21323996	21323996	G	C	SNP	KLHL9	NM_018847	human	genbank	54_36p	-1	validated	nonsense	c.863	p.S288*	1	superfamily_Galactose oxidase central domain	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
IFNA13	3447	broad.mit.edu	36	9	21357904	21357904	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	21357904	21357904	T	A	SNP	IFNA13	NM_006900	human	genbank	54_36p	-1	validated	missense	c.103	p.R35W	0	"HMMPfam_Interferon,superfamily_4-helical cytokines"	"HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D"	-	no_errors
IFNA13	3447	broad.mit.edu	36	9	21357973	21357973	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	21357973	21357973	C	A	SNP	IFNA13	NM_006900	human	genbank	54_36p	-1	validated	missense	c.34	p.V12L	0	HMMPfam_Interferon	"HMMPfam_Interferon,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D,superfamily_4-helical cytokines"	-	no_errors
ELAVL2	1993	broad.mit.edu	36	9	23682598	23682598	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	9	23682598	23682598	A	T	SNP	ELAVL2	NM_004432	human	genbank	54_36p	-1	validated	missense	c.1037	p.V346E	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
C9orf11	54586	broad.mit.edu	36	9	27276331	27276331	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	27276331	27276331	T	A	SNP	C9orf11	NM_020641	human	genbank	54_36p	-1	provisional	missense	c.511	p.N171Y	0	NULL	NULL	-	no_errors
MOBKL2B	79817	broad.mit.edu	36	9	27445162	27445162	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	27445162	27445162	G	A	SNP	MOBKL2B	NM_024761	human	genbank	54_36p	-1	reviewed	silent	c.387	p.I129	1	"HMMPfam_Mob1_phocein,superfamily_Mob1_phocein"	"HMMPfam_Mob1_phocein,superfamily_Mob1_phocein"	-	no_errors
C9orf72	203228	broad.mit.edu	36	9	27538308	27538308	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	27538308	27538308	C	G	SNP	C9orf72	NM_018325	human	genbank	54_36p	-1	validated	missense	c.1372	p.G458R	1	NULL	NULL	-	no_errors
C9orf72	203228	broad.mit.edu	36	9	27556898	27556918	+	In_Frame_Del	DEL	TTTCGAAGGATTTCTCCATTT	-	TTTCGAAGGATTTCTCCATTT	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	TTTCGAAGGATTTCTCCATTT	TTTCGAAGGATTTCTCCATTT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	27556898	27556918	TTTCGAAGGATTTCTCCATTT	-	DEL	C9orf72	NM_018325	human	genbank	54_36p	-1	validated	in_frame_del	c.221_201	p.NGEILRN68in_frame_del	1.000:1.000:0.993:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.996	NULL	NULL	"(deletion:cds_exon[27556675,27557118])"	no_errors
LINGO2	158038	broad.mit.edu	36	9	27939897	27939897	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	27939897	27939897	T	C	SNP	LINGO2	NM_152570	human	genbank	54_36p	-1	provisional	missense	c.773	p.N258S	1	"superfamily_SSF52058,HMMPfam_LRR_1"	"superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
LINGO2	158038	broad.mit.edu	36	9	27940233	27940233	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	27940233	27940233	T	C	SNP	LINGO2	NM_152570	human	genbank	54_36p	-1	provisional	missense	c.437	p.D146G	1	superfamily_SSF52058	"HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058"	-	no_errors
ACO1	48	broad.mit.edu	36	9	32398612	32398612	+	Missense_Mutation	SNP	G	G	T	rs41304757	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	32398612	32398612	G	T	SNP	ACO1	NM_002197	human	genbank	54_36p	1	reviewed	missense	c.367	p.V123L	1	"superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase"	"superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase,HMMPfam_Aconitase_C"	-	no_errors
DDX58	23586	broad.mit.edu	36	9	32475257	32475257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	32475257	32475257	G	A	SNP	DDX58	NM_014314	human	genbank	54_36p	-1	reviewed	missense	c.1396	p.R466W	0.06	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
DDX58	23586	broad.mit.edu	36	9	32477984	32477984	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	32477984	32477984	G	C	SNP	DDX58	NM_014314	human	genbank	54_36p	-1	reviewed	missense	c.1171	p.L391V	1	"HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TOPORS	10210	broad.mit.edu	36	9	32532101	32532101	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	32532101	32532101	C	A	SNP	TOPORS	NM_005802	human	genbank	54_36p	-1	validated	nonsense	c.2422	p.E808*	0.03	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
TOPORS	10210	broad.mit.edu	36	9	32533969	32533969	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	32533969	32533969	G	T	SNP	TOPORS	NM_005802	human	genbank	54_36p	-1	validated	missense	c.554	p.T185K	1	NULL	"HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
SMU1	55234	broad.mit.edu	36	9	33050569	33050569	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	33050569	33050569	G	T	SNP	SMU1	NM_018225	human	genbank	54_36p	-1	validated	nonsense	c.644	p.S215*	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00667,HMMSmart_SM00668,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
SMU1	55234	broad.mit.edu	36	9	33066580	33066580	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	33066580	33066580	C	T	SNP	SMU1	NM_018225	human	genbank	54_36p	-1	validated	splice_site	c.26+1	e1+1	1	-	-	-	no_errors
NOL6	65083	broad.mit.edu	36	9	33456615	33456615	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	33456615	33456615	C	T	SNP	NOL6	NM_022917	human	genbank	54_36p	-1	reviewed	silent	c.2043	p.L681	1	HMMPfam_Nrap	HMMPfam_Nrap	-	no_errors
KIF24	347240	broad.mit.edu	36	9	34246558	34246558	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	34246558	34246558	G	C	SNP	KIF24	NM_194313	human	genbank	54_36p	-1	validated	missense	c.3047	p.P1016R	0	NULL	"HMMPfam_SAM_1,superfamily_SAM/Pointed domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
KIF24	347240	broad.mit.edu	36	9	34247952	34247952	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	34247952	34247952	C	T	SNP	KIF24	NM_194313	human	genbank	54_36p	-1	validated	silent	c.1653	p.K551	0.58	HMMSmart_SM00129	"HMMPfam_SAM_1,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SAM/Pointed domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
KIAA1161	57462	broad.mit.edu	36	9	34361740	34361740	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	34361740	34361740	C	T	SNP	KIAA1161	ENST00000297625	human	ensembl	54_36p	-1	known	missense	c.1100	p.R367H	1	"HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases"	"HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases"	-	no_errors
CNTFR	1271	broad.mit.edu	36	9	34542726	34542726	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	34542726	34542726	C	T	SNP	CNTFR	NM_001842	human	genbank	54_36p	-1	reviewed	missense	c.895	p.A299T	1	superfamily_Fibronectin type III	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
CNTFR	1271	broad.mit.edu	36	9	34547627	34547627	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	34547627	34547627	G	T	SNP	CNTFR	NM_001842	human	genbank	54_36p	-1	reviewed	silent	c.501	p.R167	0.92	superfamily_Fibronectin type III	"PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
CNTFR	1271	broad.mit.edu	36	9	34554662	34554662	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	34554662	34554662	C	G	SNP	CNTFR	NM_001842	human	genbank	54_36p	-1	reviewed	missense	c.254	p.G85A	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
ARID3C	138715	broad.mit.edu	36	9	34612527	34612527	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	34612527	34612527	C	G	SNP	ARID3C	NM_001017363	human	genbank	54_36p	-1	reviewed	splice_site	c.866-1	e5-1	0.99	-	-	-	no_errors
IL11RA	3590	broad.mit.edu	36	9	34647128	34647128	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	34647128	34647128	G	A	SNP	IL11RA	NM_004512	human	genbank	54_36p	1	reviewed	missense	c.428	p.R143H	1	"superfamily_Fibronectin type III,HMMSmart_SM00060"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F3,HMMPfam_fn3"	-	no_errors
CCL27	10850	broad.mit.edu	36	9	34652602	34652602	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	34652602	34652602	A	G	SNP	CCL27	NM_006664	human	genbank	54_36p	-1	reviewed	missense	c.29	p.L10P	0.59	NULL	superfamily_Interleukin 8-like chemokines	-	no_errors
DNAJB5	25822	broad.mit.edu	36	9	34987056	34987056	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	34987056	34987056	A	C	SNP	DNAJB5	NM_012266	human	genbank	54_36p	1	validated	missense	c.847	p.I283L	0.98	"HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain"	"superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40/DnaJ peptide-binding domain,HMMPfam_DnaJ_C"	-	no_errors
FANCG	2189	broad.mit.edu	36	9	35065483	35065483	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	9	35065483	35065483	A	T	SNP	FANCG	NM_004629	human	genbank	54_36p	-1	reviewed	missense	c.1412	p.V471E	1	superfamily_TPR-like	"superfamily_TPR-like,HMMSmart_SM00028"	-	no_errors
FANCG	2189	broad.mit.edu	36	9	35066001	35066001	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	9	35066001	35066001	G	A	SNP	FANCG	NM_004629	human	genbank	54_36p	-1	reviewed	silent	c.1101	p.Y367	1	superfamily_TPR-like	"HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
PIGO	84720	broad.mit.edu	36	9	35081650	35081650	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	35081650	35081650	C	T	SNP	PIGO	NM_032634	human	genbank	54_36p	-1	reviewed	missense	c.2234	p.R745Q	1	NULL	"superfamily_Alkaline phosphatase-like,HMMPfam_Phosphodiest"	-	no_errors
KIAA1539	80256	broad.mit.edu	36	9	35097610	35097610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	35097610	35097610	T	C	SNP	KIAA1539	NM_025182	human	genbank	54_36p	-1	predicted	missense	c.662	p.N221S	1	NULL	NULL	-	no_errors
UNC13B	10497	broad.mit.edu	36	9	35300543	35300543	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	35300543	35300543	C	T	SNP	UNC13B	NM_006377	human	genbank	54_36p	1	reviewed	missense	c.841	p.H281Y	0.31	NULL	"HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD"	-	no_errors
UNC13B	10497	broad.mit.edu	36	9	35376219	35376219	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	35376219	35376219	G	T	SNP	UNC13B	NM_006377	human	genbank	54_36p	1	reviewed	missense	c.2776	p.A926S	1	HMMPfam_DUF1041	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
RUSC2	9853	broad.mit.edu	36	9	35550620	35550620	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	35550620	35550620	G	C	SNP	RUSC2	NM_014806	human	genbank	54_36p	1	validated	missense	c.3983	p.C1328S	1	NULL	"HMMPfam_RUN,HMMSmart_SM00593,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
FAM166B	730112	broad.mit.edu	36	9	35552533	35552533	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	35552533	35552533	C	G	SNP	FAM166B	ENST00000399742	human	ensembl	54_36p	-1	known	missense	c.583	p.G195R	1	NULL	HMMPfam_DUF2475	-	no_errors
CA9	768	broad.mit.edu	36	9	35669329	35669329	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	35669329	35669329	G	T	SNP	CA9	NM_001216	human	genbank	54_36p	1	reviewed	missense	c.1055	p.S352I	0.88	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase"	"superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
TPM2	7169	broad.mit.edu	36	9	35679193	35679193	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	35679193	35679193	C	G	SNP	TPM2	NM_003289	human	genbank	54_36p	-1	reviewed	missense	c.190	p.V64L	0.83	HMMPfam_Tropomyosin	"HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN"	-	no_errors
TLN1	7094	broad.mit.edu	36	9	35689450	35689450	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	35689450	35689450	C	A	SNP	TLN1	NM_006289	human	genbank	54_36p	-1	reviewed	missense	c.6777	p.Q2259H	1	NULL	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ"	-	no_errors
TLN1	7094	broad.mit.edu	36	9	35714624	35714624	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	35714624	35714624	C	A	SNP	TLN1	NM_006289	human	genbank	54_36p	-1	reviewed	silent	c.456	p.L152	1	"HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236"	"HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729,superfamily_SSF54236"	-	no_errors
RGP1	9827	broad.mit.edu	36	9	35741705	35741705	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	35741705	35741705	T	C	SNP	RGP1	NM_001080496	human	genbank	54_36p	1	provisional	missense	c.836	p.V279A	1	HMMPfam_Rgp1	HMMPfam_Rgp1	-	no_errors
RECK	8434	broad.mit.edu	36	9	36092105	36092105	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	36092105	36092105	A	T	SNP	RECK	NM_021111	human	genbank	54_36p	1	reviewed	missense	c.1313	p.E438V	1	NULL	"superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2,HMMSmart_SM00280,PatternScan_KAZAL"	-	no_errors
CCIN	881	broad.mit.edu	36	9	36160503	36160503	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	36160503	36160503	C	A	SNP	CCIN	NM_005893	human	genbank	54_36p	1	reviewed	missense	c.1004	p.T335N	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,PatternScan_MULTICOPPER_OXIDASE1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1,PatternScan_MULTICOPPER_OXIDASE1"	-	no_errors
FRMPD1	22844	broad.mit.edu	36	9	37722367	37722367	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	37722367	37722367	G	C	SNP	FRMPD1	NM_014907	human	genbank	54_36p	1	provisional	missense	c.925	p.A309P	1	"HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	"PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	-	no_errors
FRMPD1	22844	broad.mit.edu	36	9	37723549	37723549	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	37723549	37723549	A	G	SNP	FRMPD1	NM_014907	human	genbank	54_36p	1	provisional	missense	c.1075	p.S359G	1	"HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41"	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41"	-	no_errors
FRMPD1	22844	broad.mit.edu	36	9	37735741	37735741	+	Missense_Mutation	SNP	G	G	T	rs62640014	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	37735741	37735741	G	T	SNP	FRMPD1	NM_014907	human	genbank	54_36p	1	provisional	missense	c.3712	p.D1238Y	0	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41"	-	no_errors
MCART1	92014	broad.mit.edu	36	9	37878379	37878379	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	37878379	37878379	G	A	SNP	MCART1	NM_033412	human	genbank	54_36p	-1	validated	nonsense	c.169	p.R57*	1	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	"superfamily_Mitoch_carrier,HMMPfam_Mito_carr"	-	no_errors
FAM75A3	727830	broad.mit.edu	36	9	40694225	40694225	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	40694225	40694225	G	A	SNP	FAM75A3	NM_001083124	human	genbank	54_36p	1	predicted	missense	c.1882	p.D628N	0	NULL	NULL	-	no_errors
ANKRD20A2	441430	broad.mit.edu	36	9	42358515	42358515	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	42358515	42358515	G	T	SNP	ANKRD20A2	NM_001012421	human	genbank	54_36p	1	validated	missense	c.105	p.Q35H	0	superfamily_ANK	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	-	no_errors
FAM75A7	26165	broad.mit.edu	36	9	65247358	65247358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	65247358	65247358	C	T	SNP	FAM75A7	NM_015667	human	genbank	54_36p	-1	validated	missense	c.277	p.E93K	0	NULL	NULL	-	no_errors
FOXD4L3	286380	broad.mit.edu	36	9	70108671	70108671	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	70108671	70108671	A	T	SNP	FOXD4L3	NM_199135	human	genbank	54_36p	1	validated	missense	c.984	p.R328S	1	NULL	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
PRKACG	5568	broad.mit.edu	36	9	70818072	70818072	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	70818072	70818072	A	G	SNP	PRKACG	NM_002732	human	genbank	54_36p	-1	reviewed	missense	c.757	p.S253P	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X"	-	no_errors
PTAR1	375743	broad.mit.edu	36	9	71523211	71523211	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	71523211	71523211	G	C	SNP	PTAR1	NM_001099666	human	genbank	54_36p	-1	validated	missense	c.1076	p.T359R	1	NULL	"superfamily_Prenyl_trans,HMMPfam_PPTA"	-	no_errors
SMC5	23137	broad.mit.edu	36	9	72087265	72087265	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	72087265	72087265	A	T	SNP	SMC5	NM_015110	human	genbank	54_36p	1	validated	silent	c.927	p.R309	0.42	"HMMPfam_SMC_N,superfamily_SSF52540"	"HMMPfam_SMC_N,superfamily_SSF52540"	-	no_errors
SMC5	23137	broad.mit.edu	36	9	72128856	72128856	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	72128856	72128856	T	C	SNP	SMC5	NM_015110	human	genbank	54_36p	1	validated	missense	c.2374	p.S792P	0	"HMMPfam_SMC_N,superfamily_SSF52540"	"HMMPfam_SMC_N,superfamily_SSF52540"	-	no_errors
TRPM3	80036	broad.mit.edu	36	9	72341321	72341321	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	72341321	72341321	G	A	SNP	TRPM3	NM_001007471	human	genbank	54_36p	-1	reviewed	missense	c.4492	p.R1498C	1	NULL	HMMPfam_Ion_trans	-	no_errors
TRPM3	80036	broad.mit.edu	36	9	72357937	72357937	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	72357937	72357937	C	A	SNP	TRPM3	NM_001007471	human	genbank	54_36p	-1	reviewed	silent	c.3297	p.V1099	1	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
TRPM3	80036	broad.mit.edu	36	9	72615968	72615968	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	72615968	72615968	A	T	SNP	TRPM3	NM_206946	human	genbank	54_36p	-1	reviewed	missense	c.527	p.F176Y	1	NULL	HMMPfam_Ion_trans	-	no_errors
TRPM3	80036	broad.mit.edu	36	9	72667692	72667692	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	72667692	72667692	A	C	SNP	TRPM3	NM_001007471	human	genbank	54_36p	-1	reviewed	silent	c.414	p.A138	1	NULL	HMMPfam_Ion_trans	-	no_errors
TMEM2	23670	broad.mit.edu	36	9	73494923	73494923	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	73494923	73494923	C	T	SNP	TMEM2	NM_013390	human	genbank	54_36p	-1	validated	silent	c.3756	p.P1252	0.98	NULL	"HMMPfam_G8,superfamily_Pectin lyase-like"	-	no_errors
TMEM2	23670	broad.mit.edu	36	9	73555065	73555065	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	73555065	73555065	T	C	SNP	TMEM2	NM_013390	human	genbank	54_36p	-1	validated	silent	c.45	p.Q15	0.94	NULL	"superfamily_Pectin lyase-like,HMMPfam_G8"	-	no_errors
TMC1	117531	broad.mit.edu	36	9	74625673	74625673	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	74625673	74625673	A	G	SNP	TMC1	NM_138691	human	genbank	54_36p	1	reviewed	missense	c.1859	p.N620S	1	HMMPfam_TMC	HMMPfam_TMC	-	no_errors
TRPM6	140803	broad.mit.edu	36	9	76560104	76560104	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	76560104	76560104	T	C	SNP	TRPM6	NM_017662	human	genbank	54_36p	-1	validated	missense	c.4891	p.K1631E	0.87	NULL	"HMMPfam_Ion_trans,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase"	-	no_errors
C9orf41	138199	broad.mit.edu	36	9	76821115	76821115	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	76821115	76821115	G	A	SNP	C9orf41	NM_152420	human	genbank	54_36p	-1	predicted	missense	c.479	p.S160F	1	"HMMPfam_N2227,superfamily_SSF53335"	"HMMPfam_N2227,superfamily_SSF53335"	-	no_errors
PCSK5	5125	broad.mit.edu	36	9	77974504	77974504	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	77974504	77974504	G	C	SNP	PCSK5	NM_006200	human	genbank	54_36p	1	reviewed	missense	c.1684	p.E562Q	1	"superfamily_Galactose-binding domain-like,HMMPfam_P_proprotein"	###############################################################################################################################################################################################################################################################	-	no_errors
FOXB2	442425	broad.mit.edu	36	9	78824772	78824772	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	78824772	78824772	C	T	SNP	FOXB2	NM_001013735	human	genbank	54_36p	1	provisional	missense	c.382	p.P128S	0.02	NULL	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
VPS13A	23230	broad.mit.edu	36	9	79086871	79086871	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	T	T	-	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	79086871	79086871	T	-	DEL	VPS13A	NM_033305	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2979	p.L994fs	1	NULL	HMMPfam_DUF1162	"(deletion:cds_exon[79086857,79087010])"	no_errors
GNA14	9630	broad.mit.edu	36	9	79228878	79228878	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	79228878	79228878	C	T	SNP	GNA14	NM_004297	human	genbank	54_36p	-1	reviewed	missense	c.905	p.R302K	1	"HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00275"	"HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain"	-	no_errors
CEP78	84131	broad.mit.edu	36	9	80071219	80071219	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	80071219	80071219	C	T	SNP	CEP78	NM_001098802	human	genbank	54_36p	1	validated	silent	c.1890	p.L630	0.03	NULL	superfamily_SSF52047	-	no_errors
PSAT1	29968	broad.mit.edu	36	9	80132916	80132922	+	Frame_Shift_Del	DEL	AGGGCAT	-	AGGGCAT	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	AGGGCAT	AGGGCAT	-	-	AGGGCAT	AGGGCAT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	80132916	80132922	AGGGCAT	-	DEL	PSAT1	NM_058179	human	genbank	54_36p	1	reviewed	frame_shift_del	c.999_1005	p.H335fs	1.000:1.000:1.000:1.000:1.000:1.000:0.995	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5,PatternScan_AA_TRANSFER_CLASS_5"	"(deletion:cds_exon[80132787,80132924])"	no_errors
TLE1	7088	broad.mit.edu	36	9	83390311	83390311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	83390311	83390311	A	T	SNP	TLE1	NM_005077	human	genbank	54_36p	-1	provisional	missense	c.2057	p.V686E	1	superfamily_WD40 repeat-like	"HMMPfam_TLE_N,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
FAM75D1	389763	broad.mit.edu	36	9	83797131	83797131	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	83797131	83797131	G	T	SNP	FLJ46321	NM_001001670	human	genbank	54_36p	1	validated	silent	c.1926	p.V642	0	NULL	NULL	-	no_errors
FAM75D1	389763	broad.mit.edu	36	9	83797393	83797393	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	83797393	83797393	G	C	SNP	FLJ46321	NM_001001670	human	genbank	54_36p	1	validated	missense	c.2188	p.G730R	0.01	NULL	NULL	-	no_errors
FRMD3	257019	broad.mit.edu	36	9	85147995	85147995	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	85147995	85147995	C	T	SNP	FRMD3	NM_174938	human	genbank	54_36p	-1	validated	silent	c.402	p.R134	0.99	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,PatternScan_PPASE"	-	no_errors
RMI1	80010	broad.mit.edu	36	9	85806843	85806844	+	Nonsense_Mutation	DNP	TG	TG	AT	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	85806843	85806844	TG	AT	DNP	RMI1	NM_024945	human	genbank	54_36p	1	validated	nonsense	c.1122_1123	p.SEK374R*	0.186:0.251	NULL	"HMMPfam_DUF1767,HMMPfam_tRNA_anti"	-	no_errors
AGTPBP1	23287	broad.mit.edu	36	9	87437732	87437732	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	87437732	87437732	A	T	SNP	AGTPBP1	NM_015239	human	genbank	54_36p	-1	validated	silent	c.1560	p.L520	0.2	NULL	"superfamily_ARM-type_fold,superfamily_SSF53187,HMMPfam_Peptidase_M14"	-	no_errors
ZCCHC6	79670	broad.mit.edu	36	9	88113952	88113952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	88113952	88113952	C	T	SNP	ZCCHC6	NM_024617	human	genbank	54_36p	-1	validated	missense	c.3655	p.E1219K	1	superfamily_PAP/OAS1 substrate-binding domain	"HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc,HMMPfam_zf-CCHC,HMMSmart_SM00343,HMMPfam_NTP_transf_2,superfamily_Retrovirus zinc finger-like domains"	-	no_errors
CTSL1	1514	broad.mit.edu	36	9	89532444	89532444	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	89532444	89532444	C	T	SNP	CTSL1	NM_001912	human	genbank	54_36p	1	reviewed	missense	c.106	p.H36Y	0.01	"superfamily_SSF54001,HMMPfam_Inhibitor_I29"	"superfamily_SSF54001,HMMPfam_Inhibitor_I29,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN"	-	no_errors
CTSL1	1514	broad.mit.edu	36	9	89533085	89533085	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	89533085	89533085	C	-	DEL	CTSL1	NM_001912	human	genbank	54_36p	1	reviewed	frame_shift_del	c.350	p.S117fs	0.72	"superfamily_SSF54001,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1"	"superfamily_SSF54001,HMMPfam_Inhibitor_I29,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN"	"(deletion:cds_exon[89532985,89533131])"	no_errors
CTSL1	1514	broad.mit.edu	36	9	89533497	89533497	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	89533497	89533497	G	A	SNP	CTSL1	NM_001912	human	genbank	54_36p	1	reviewed	missense	c.574	p.D192N	0.96	"HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001"	"PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,HMMPfam_Inhibitor_I29,superfamily_SSF54001"	-	no_errors
C9orf79	286234	broad.mit.edu	36	9	89691825	89691825	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	89691825	89691825	C	T	SNP	C9orf79	NM_178828	human	genbank	54_36p	1	validated	missense	c.2603	p.P868L	0	NULL	NULL	-	no_errors
S1PR3	1903	broad.mit.edu	36	9	90806353	90806353	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	90806353	90806353	A	G	SNP	S1PR3	NM_005226	human	genbank	54_36p	1	reviewed	missense	c.418	p.M140V	1	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
S1PR3	1903	broad.mit.edu	36	9	90806932	90806932	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	90806932	90806932	G	C	SNP	S1PR3	NM_005226	human	genbank	54_36p	1	reviewed	missense	c.997	p.D333H	1	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
SECISBP2	79048	broad.mit.edu	36	9	91130309	91130309	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	91130309	91130309	G	C	SNP	SECISBP2	NM_024077	human	genbank	54_36p	1	reviewed	missense	c.330	p.Q110H	0.12	NULL	"superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae"	-	no_errors
ROR2	4920	broad.mit.edu	36	9	93526859	93526859	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	93526859	93526859	C	A	SNP	ROR2	NM_004560	human	genbank	54_36p	-1	reviewed	missense	c.1738	p.D580Y	1	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_Fz,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
SPTLC1	10558	broad.mit.edu	36	9	93861412	93861412	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	93861412	93861412	C	T	SNP	SPTLC1	NM_006415	human	genbank	54_36p	-1	reviewed	splice_site	c.561-1	e7-1	1	-	-	-	no_errors
CENPP	401541	broad.mit.edu	36	9	94134349	94134349	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	9	94134349	94134349	C	A	SNP	CENPP	NM_001012267	human	genbank	54_36p	1	validated	missense	c.184	p.H62N	0.61	NULL	NULL	-	no_errors
OMD	4958	broad.mit.edu	36	9	94217401	94217401	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	94217401	94217401	G	C	SNP	OMD	NM_005014	human	genbank	54_36p	-1	validated	missense	c.1120	p.Q374E	1	superfamily_L domain-like	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
OMD	4958	broad.mit.edu	36	9	94219641	94219641	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	94219641	94219641	T	C	SNP	OMD	NM_005014	human	genbank	54_36p	-1	validated	missense	c.21	p.I7M	0.6	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like"	-	no_errors
FGD3	619477	broad.mit.edu	36	9	94778675	94778675	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	94778675	94778675	G	C	SNP	FGD3	NM_001083536	human	genbank	54_36p	1	validated	missense	c.316	p.G106R	0.11	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00064,HMMPfam_FYVE"	-	no_errors
SUSD3	203328	broad.mit.edu	36	9	94877923	94877923	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	94877923	94877923	C	A	SNP	SUSD3	NM_145006	human	genbank	54_36p	1	provisional	missense	c.125	p.T42N	0.99	"superfamily_Complement control module/SCR domain,HMMSmart_SM00032"	"superfamily_Complement control module/SCR domain,HMMSmart_SM00032"	-	no_errors
C9orf89	84270	broad.mit.edu	36	9	94912803	94912803	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	94912803	94912803	C	G	SNP	C9orf89	NM_032310	human	genbank	54_36p	1	validated	missense	c.283	p.L95V	0.36	NULL	NULL	-	no_errors
C9orf129	445577	broad.mit.edu	36	9	95121273	95121273	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	95121273	95121273	T	G	SNP	C9orf129	NM_001098808	human	genbank	54_36p	-1	predicted	missense	c.370	p.T124P	1	NULL	NULL	-	no_errors
PHF2	5253	broad.mit.edu	36	9	95456662	95456662	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	95456662	95456662	C	T	SNP	PHF2	NM_005392	human	genbank	54_36p	1	reviewed	silent	c.936	p.T312	0.75	"superfamily_SSF51197,HMMSmart_JmjC,HMMPfam_JmjC"	"superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SSF51197,HMMSmart_JmjC,HMMPfam_JmjC"	-	no_errors
PHF2	5253	broad.mit.edu	36	9	95475949	95475949	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	95475949	95475949	C	T	SNP	PHF2	NM_005392	human	genbank	54_36p	1	reviewed	silent	c.2610	p.F870	1	NULL	"HMMSmart_PHD,HMMSmart_JmjC,superfamily_FYVE_PHD_ZnF,HMMPfam_JmjC,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF51197"	-	no_errors
ZNF169	169841	broad.mit.edu	36	9	96102301	96102301	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	96102301	96102301	C	T	SNP	ZNF169	NM_194320	human	genbank	54_36p	1	validated	missense	c.640	p.R214C	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HIATL1	84641	broad.mit.edu	36	9	96247096	96247096	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	96247096	96247096	C	T	SNP	HIATL1	NM_032558	human	genbank	54_36p	1	validated	silent	c.540	p.V180	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
FANCC	2176	broad.mit.edu	36	9	96909354	96909354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	96909354	96909354	G	T	SNP	FANCC	NM_000136	human	genbank	54_36p	-1	reviewed	missense	c.1348	p.L450M	0	HMMPfam_Fanconi_C	HMMPfam_Fanconi_C	-	no_errors
PTCH1	5727	broad.mit.edu	36	9	97249263	97249263	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	97249263	97249263	G	T	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	missense	c.4096	p.Q1366K	1	NULL	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
PTCH1	5727	broad.mit.edu	36	9	97258384	97258384	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	97258384	97258384	C	A	SNP	PTCH1	NM_000264	human	genbank	54_36p	-1	reviewed	missense	c.3301	p.A1101S	1	"HMMPfam_Patched,superfamily_SSF82866"	"HMMPfam_Patched,superfamily_SSF82866"	-	no_errors
HABP4	22927	broad.mit.edu	36	9	98260549	98260549	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	98260549	98260549	G	A	SNP	HABP4	NM_014282	human	genbank	54_36p	1	validated	missense	c.417	p.M139I	0	NULL	HMMPfam_HABP4_PAI-RBP1	-	no_errors
C9orf21	195827	broad.mit.edu	36	9	98453761	98453761	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	98453761	98453761	C	A	SNP	C9orf21	NM_153698	human	genbank	54_36p	-1	validated	splice_site	c.315+1	e3+1	1	-	-	-	no_errors
TSTD2	158427	broad.mit.edu	36	9	99404817	99404817	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	99404817	99404817	G	C	SNP	C9orf97	NM_139246	human	genbank	54_36p	-1	validated	missense	c.1306	p.Q436E	0.02	NULL	"superfamily_Rhodanese/Cell cycle control phosphatase,HMMPfam_Rhodanese,HMMSmart_SM00450"	-	no_errors
TBC1D2	55357	broad.mit.edu	36	9	100046197	100046197	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100046197	100046197	G	C	SNP	TBC1D2	NM_018421	human	genbank	54_36p	-1	validated	missense	c.547	p.P183A	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC"	-	no_errors
TBC1D2	55357	broad.mit.edu	36	9	100057643	100057643	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100057643	100057643	A	G	SNP	TBC1D2	NM_018421	human	genbank	54_36p	-1	validated	missense	c.2	p.M1T	1	NULL	"HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
GABBR2	9568	broad.mit.edu	36	9	100095912	100095912	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100095912	100095912	A	G	SNP	GABBR2	NM_005458	human	genbank	54_36p	-1	validated	missense	c.2636	p.I879T	1	NULL	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
ANKS6	203286	broad.mit.edu	36	9	100570248	100570248	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100570248	100570248	G	C	SNP	ANKS6	NM_173551	human	genbank	54_36p	-1	provisional	missense	c.2078	p.A693G	0.97	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
GALNT12	79695	broad.mit.edu	36	9	100625444	100625444	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100625444	100625444	C	G	SNP	GALNT12	NM_024642	human	genbank	54_36p	1	validated	missense	c.457	p.L153V	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458"	-	no_errors
COL15A1	1306	broad.mit.edu	36	9	100787677	100787677	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100787677	100787677	C	T	SNP	COL15A1	NM_001855	human	genbank	54_36p	1	reviewed	missense	c.110	p.S37F	0.68	superfamily_ConA_like_lec_gl	"superfamily_ConA_like_lec_gl,HMMSmart_TSPN,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_Endostatin"	-	no_errors
COL15A1	1306	broad.mit.edu	36	9	100803013	100803013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100803013	100803013	G	A	SNP	COL15A1	NM_001855	human	genbank	54_36p	1	reviewed	missense	c.1024	p.G342S	0.17	NULL	"HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Endostatin,HMMPfam_Laminin_G_2,superfamily_C-type_lectin_fold"	-	no_errors
COL15A1	1306	broad.mit.edu	36	9	100868987	100868987	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100868987	100868987	G	T	SNP	COL15A1	NM_001855	human	genbank	54_36p	1	reviewed	silent	c.3654	p.L1218	1	"HMMPfam_Endostatin,superfamily_C-type_lectin_fold"	"HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Endostatin,HMMPfam_Laminin_G_2,superfamily_C-type_lectin_fold"	-	no_errors
COL15A1	1306	broad.mit.edu	36	9	100869130	100869130	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100869130	100869130	G	T	SNP	COL15A1	NM_001855	human	genbank	54_36p	1	reviewed	missense	c.3797	p.R1266M	1	"HMMPfam_Endostatin,superfamily_C-type_lectin_fold"	"HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Endostatin,HMMPfam_Laminin_G_2,superfamily_C-type_lectin_fold"	-	no_errors
TGFBR1	7046	broad.mit.edu	36	9	100940110	100940110	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	100940110	100940110	G	T	SNP	TGFBR1	NM_004612	human	genbank	54_36p	1	reviewed	silent	c.723	p.S241	0.92	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase"	"superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ALG2	85365	broad.mit.edu	36	9	101020798	101020798	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	101020798	101020798	C	A	SNP	ALG2	NM_033087	human	genbank	54_36p	-1	reviewed	nonsense	c.490	p.E164*	1	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_Glycos_transf_1"	-	no_errors
NR4A3	8013	broad.mit.edu	36	9	101634829	101634829	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	101634829	101634829	C	A	SNP	NR4A3	NM_173200	human	genbank	54_36p	1	reviewed	missense	c.1022	p.A341E	1	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716"	"HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep"	-	no_errors
INVS	27130	broad.mit.edu	36	9	102054415	102054415	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	102054415	102054415	G	T	SNP	INVS	NM_014425	human	genbank	54_36p	1	reviewed	missense	c.1108	p.V370F	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
INVS	27130	broad.mit.edu	36	9	102075166	102075167	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	102075166	102075167	GA	TT	DNP	INVS	NM_014425	human	genbank	54_36p	1	reviewed	missense	c.1771_1772	p.D591F	1.000:1.000	NULL	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
BAAT	570	broad.mit.edu	36	9	103170223	103170224	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	-	-	T	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	103170223	103170224	-	T	INS	BAAT	NM_001701	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.669_668	p.V224fs	1.000:1.000	"superfamily_SSF53474,HMMPfam_BAAT_C"	"HMMPfam_Bile_Hydr_Trans,superfamily_SSF53474,HMMPfam_BAAT_C"	-	no_errors
ZNF189	7743	broad.mit.edu	36	9	103210725	103210725	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	103210725	103210725	A	G	SNP	ZNF189	NM_003452	human	genbank	54_36p	1	validated	missense	c.854	p.E285G	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
C9orf125	84302	broad.mit.edu	36	9	103279181	103279181	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	103279181	103279181	G	A	SNP	C9orf125	NM_032342	human	genbank	54_36p	-1	predicted	silent	c.15	p.T5	0.02	NULL	NULL	-	no_errors
RNF20	56254	broad.mit.edu	36	9	103346886	103346886	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	103346886	103346886	G	A	SNP	RNF20	NM_019592	human	genbank	54_36p	1	reviewed	silent	c.645	p.E215	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
RNF20	56254	broad.mit.edu	36	9	103362966	103362966	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	103362966	103362966	C	A	SNP	RNF20	NM_019592	human	genbank	54_36p	1	reviewed	missense	c.2445	p.N815K	1	NULL	"HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
GRIN3A	116443	broad.mit.edu	36	9	103472336	103472336	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	103472336	103472336	A	G	SNP	GRIN3A	NM_133445	human	genbank	54_36p	-1	reviewed	silent	c.2179	p.L727	1	"superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan"	"superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan"	-	no_errors
SMC2	10592	broad.mit.edu	36	9	105898255	105898255	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	105898255	105898255	G	A	SNP	SMC2	NM_001042550	human	genbank	54_36p	1	validated	silent	c.174	p.R58	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
SMC2	10592	broad.mit.edu	36	9	105936623	105936623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	105936623	105936623	T	A	SNP	SMC2	NM_001042550	human	genbank	54_36p	1	validated	missense	c.3215	p.V1072D	1	"HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
OR13F1	138805	broad.mit.edu	36	9	106307154	106307154	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	106307154	106307154	G	A	SNP	OR13F1	NM_001004485	human	genbank	54_36p	1	provisional	missense	c.790	p.A264T	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR13C8	138802	broad.mit.edu	36	9	106372007	106372007	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	106372007	106372007	A	C	SNP	OR13C8	NM_001004483	human	genbank	54_36p	1	provisional	silent	c.738	p.T246	0.1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR13C5	138799	broad.mit.edu	36	9	106400815	106400815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	106400815	106400815	C	A	SNP	OR13C5	NM_001004482	human	genbank	54_36p	-1	provisional	missense	c.701	p.R234I	0.04	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ABCA1	19	broad.mit.edu	36	9	106631078	106631078	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	106631078	106631078	C	T	SNP	ABCA1	NM_005502	human	genbank	54_36p	-1	reviewed	nonsense	c.2055	p.W685*	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA1	19	broad.mit.edu	36	9	106634791	106634791	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	106634791	106634791	G	A	SNP	ABCA1	NM_005502	human	genbank	54_36p	-1	reviewed	missense	c.1394	p.A465V	0	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA1	19	broad.mit.edu	36	9	106639096	106639096	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	106639096	106639096	T	A	SNP	ABCA1	NM_005502	human	genbank	54_36p	-1	reviewed	missense	c.1297	p.M433L	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SLC44A1	23446	broad.mit.edu	36	9	107150529	107150529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	107150529	107150529	G	T	SNP	SLC44A1	NM_080546	human	genbank	54_36p	1	validated	missense	c.476	p.C159F	1	NULL	HMMPfam_DUF580	-	no_errors
ZNF462	58499	broad.mit.edu	36	9	108727368	108727368	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	108727368	108727368	C	T	SNP	ZNF462	NM_021224	human	genbank	54_36p	1	validated	missense	c.1354	p.R452C	1	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_beta-sandwich domain of Sec23/24"	-	no_errors
ZNF462	58499	broad.mit.edu	36	9	108731020	108731020	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	108731020	108731020	G	C	SNP	ZNF462	NM_021224	human	genbank	54_36p	1	validated	missense	c.5006	p.C1669S	1	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24"	-	no_errors
IKBKAP	8518	broad.mit.edu	36	9	110691487	110691487	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	9	110691487	110691487	C	G	SNP	IKBKAP	NM_003640	human	genbank	54_36p	-1	reviewed	silent	c.3168	p.L1056	0.57	NULL	"HMMPfam_IKI3,superfamily_Amine_DH_B_like"	-	no_errors
IKBKAP	8518	broad.mit.edu	36	9	110710486	110710486	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	110710486	110710486	G	T	SNP	IKBKAP	NM_003640	human	genbank	54_36p	-1	reviewed	missense	c.1380	p.D460E	1	HMMPfam_IKI3	"HMMPfam_IKI3,superfamily_Amine_DH_B_like"	-	no_errors
CTNNAL1	8727	broad.mit.edu	36	9	110779092	110779092	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	9	110779092	110779092	T	G	SNP	CTNNAL1	NM_003798	human	genbank	54_36p	-1	provisional	missense	c.1159	p.S387R	0.92	superfamily_alpha-catenin/vinculin	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin"	-	no_errors
EPB41L4B	54566	broad.mit.edu	36	9	111019214	111019214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	111019214	111019214	G	A	SNP	EPB41L4B	NM_019114	human	genbank	54_36p	-1	validated	missense	c.1442	p.S481L	0.84	NULL	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA"	-	no_errors
SVEP1	79987	broad.mit.edu	36	9	112316053	112316053	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	112316053	112316053	A	C	SNP	SVEP1	NM_153366	human	genbank	54_36p	-1	validated	missense	c.1119	p.C373W	1	"superfamily_Growth factor receptor domain,PatternScan_EGF_2"	###############################################################################################################################################################################################################################################################	-	no_errors
LPAR1	1902	broad.mit.edu	36	9	112677753	112677753	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	112677753	112677753	G	A	SNP	LPAR1	NM_001401	human	genbank	54_36p	-1	reviewed	silent	c.864	p.D288	0.98	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR2K2	26248	broad.mit.edu	36	9	113129786	113129786	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	113129786	113129786	T	A	SNP	OR2K2	NM_205859	human	genbank	54_36p	-1	provisional	missense	c.749	p.Y250F	0.06	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PTGR1	22949	broad.mit.edu	36	9	113385599	113385599	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	113385599	113385599	C	G	SNP	PTGR1	NM_012212	human	genbank	54_36p	-1	provisional	missense	c.469	p.V157L	0.93	"superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N"	"superfamily_GroES_like,superfamily_NAD(P)-bd,HMMPfam_ADH_zinc_N"	-	no_errors
ROD1	9991	broad.mit.edu	36	9	114029723	114029723	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	114029723	114029723	T	G	SNP	ROD1	NM_005156	human	genbank	54_36p	-1	validated	missense	c.1237	p.N413H	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ROD1	9991	broad.mit.edu	36	9	114030520	114030520	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	9	114030520	114030520	C	G	SNP	ROD1	NM_005156	human	genbank	54_36p	-1	validated	missense	c.1192	p.A398P	1	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
FKBP15	23307	broad.mit.edu	36	9	114989906	114989906	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	114989906	114989906	G	C	SNP	FKBP15	NM_015258	human	genbank	54_36p	-1	validated	silent	c.1371	p.A457	1	NULL	"superfamily_FKBP-like,HMMPfam_FKBP_C"	-	no_errors
PRPF4	9128	broad.mit.edu	36	9	115093655	115093655	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	9	115093655	115093655	T	A	SNP	PRPF4	NM_004697	human	genbank	54_36p	1	provisional	missense	c.1463	p.L488Q	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00500,HMMPfam_PRP4,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_PEROXIDASE_2,PatternScan_WD_REPEATS_1"	-	no_errors
C9orf43	257169	broad.mit.edu	36	9	115215624	115215624	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	115215624	115215624	C	G	SNP	C9orf43	NM_152786	human	genbank	54_36p	1	predicted	missense	c.30	p.D10E	0.98	NULL	NULL	-	no_errors
RGS3	5998	broad.mit.edu	36	9	115264277	115264277	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	115264277	115264277	C	T	SNP	RGS3	NM_144488	human	genbank	54_36p	1	reviewed	silent	c.390	p.I130	0.08	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_PH domain-like,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
COL27A1	85301	broad.mit.edu	36	9	116013085	116013085	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116013085	116013085	C	T	SNP	COL27A1	NM_032888	human	genbank	54_36p	1	provisional	silent	c.2325	p.G775	0.25	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL27A1	85301	broad.mit.edu	36	9	116103804	116103804	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116103804	116103804	C	T	SNP	COL27A1	NM_032888	human	genbank	54_36p	1	provisional	missense	c.4831	p.R1611W	0.42	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases"	-	no_errors
AKNA	80709	broad.mit.edu	36	9	116153002	116153002	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116153002	116153002	G	C	SNP	AKNA	NM_030767	human	genbank	54_36p	-1	validated	missense	c.3179	p.T1060R	0.01	NULL	NULL	-	no_errors
AKNA	80709	broad.mit.edu	36	9	116179165	116179165	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116179165	116179165	C	T	SNP	AKNA	NM_030767	human	genbank	54_36p	-1	validated	missense	c.743	p.G248D	0	NULL	NULL	-	no_errors
DFNB31	25861	broad.mit.edu	36	9	116204926	116204926	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116204926	116204926	C	A	SNP	DFNB31	NM_015404	human	genbank	54_36p	-1	validated	missense	c.2653	p.A885S	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
DFNB31	25861	broad.mit.edu	36	9	116205413	116205413	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	116205413	116205413	G	A	SNP	DFNB31	NM_015404	human	genbank	54_36p	-1	validated	silent	c.2446	p.L816	0.7	"HMMPfam_PDZ,superfamily_PDZ domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
DFNB31	25861	broad.mit.edu	36	9	116226584	116226584	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116226584	116226584	G	C	SNP	DFNB31	NM_015404	human	genbank	54_36p	-1	validated	missense	c.1267	p.R423G	0.06	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
DFNB31	25861	broad.mit.edu	36	9	116306424	116306424	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116306424	116306424	G	C	SNP	DFNB31	NM_015404	human	genbank	54_36p	-1	validated	missense	c.479	p.S160W	1	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
TNC	3371	broad.mit.edu	36	9	116883940	116883940	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	116883940	116883940	T	A	SNP	TNC	NM_002160	human	genbank	54_36p	-1	validated	missense	c.2336	p.Y779F	1	"HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like"	"PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,HMMPfam_EGF,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMSmart_FBG,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen_a/b/g_C"	-	no_errors
DEC1	50514	broad.mit.edu	36	9	117203399	117203399	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	117203399	117203399	C	A	SNP	DEC1	NM_017418	human	genbank	54_36p	1	validated	missense	c.194	p.A65E	0	NULL	NULL	-	no_errors
PAPPA	5069	broad.mit.edu	36	9	118104947	118104947	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	118104947	118104947	C	G	SNP	PAPPA	NM_002581	human	genbank	54_36p	1	reviewed	missense	c.3044	p.T1015R	1	superfamily_SSF55486	"superfamily_ConA_like_lec_gl,HMMSmart_LamGL,superfamily_SSF55486,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
PAPPA	5069	broad.mit.edu	36	9	118179697	118179697	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	9	118179697	118179697	C	G	SNP	PAPPA	NM_002581	human	genbank	54_36p	1	reviewed	missense	c.4627	p.L1543V	1	superfamily_SSF55486	"HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMSmart_LamGL,HMMPfam_Peptidase_M43,superfamily_ConA_like_lec_gl,superfamily_Complement_control_module,superfamily_SSF55486"	-	no_errors
ASTN2	23245	broad.mit.edu	36	9	118289579	118289588	+	Frame_Shift_Del	DEL	TCAGCAAAAC	-	TCAGCAAAAC	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	TCAGCAAAAC	TCAGCAAAAC	-	-	TCAGCAAAAC	TCAGCAAAAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	118289579	118289588	TCAGCAAAAC	-	DEL	ASTN2	NM_198187	human	genbank	54_36p	-1	validated	frame_shift_del	c.3377_3368	p.S1123fs	1.000:1.000:0.928:0.996:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_Fibronectin type III,HMMPfam_fn3"	"superfamily_EGF/Laminin,HMMSmart_SM00457,superfamily_Fibronectin type III,HMMPfam_fn3"	"(deletion:cds_exon[118289459,118289600])"	no_errors
ASTN2	23245	broad.mit.edu	36	9	119016679	119016679	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	119016679	119016679	C	T	SNP	ASTN2	NM_198187	human	genbank	54_36p	-1	validated	missense	c.794	p.R265Q	1	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00457,superfamily_Fibronectin type III,HMMPfam_fn3"	-	no_errors
TLR4	7099	broad.mit.edu	36	9	119515072	119515072	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	9	119515072	119515072	A	G	SNP	TLR4	NM_138554	human	genbank	54_36p	1	reviewed	missense	c.845	p.N282S	0.07	superfamily_L domain-like	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
TLR4	7099	broad.mit.edu	36	9	119516716	119516716	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	119516716	119516716	G	A	SNP	TLR4	NM_138554	human	genbank	54_36p	1	reviewed	missense	c.2489	p.G830E	0.01	NULL	"HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like"	-	no_errors
CDK5RAP2	55755	broad.mit.edu	36	9	122239479	122239479	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	122239479	122239479	C	G	SNP	CDK5RAP2	NM_018249	human	genbank	54_36p	-1	reviewed	silent	c.3870	p.V1290	1	NULL	HMMPfam_Microtub_assoc	-	no_errors
TRAF1	7185	broad.mit.edu	36	9	122728061	122728062	+	Missense_Mutation	DNP	AC	AC	GT	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	122728061	122728062	AC	GT	DNP	TRAF1	NM_005658	human	genbank	54_36p	-1	reviewed	missense	c.114_113	p.C38Y	0.582:0.848	NULL	"superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
C5	727	broad.mit.edu	36	9	122778907	122778907	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	122778907	122778907	G	C	SNP	C5	NM_001735	human	genbank	54_36p	-1	reviewed	silent	c.3756	p.A1252	0.99	"superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp"	###############################################################################################################################################################################################################################################################	-	no_errors
CEP110	11064	broad.mit.edu	36	9	122917284	122917284	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	122917284	122917284	T	C	SNP	CEP110	NM_007018	human	genbank	54_36p	1	reviewed	silent	c.1440	p.A480	0.8	NULL	"superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm"	-	no_errors
CEP110	11064	broad.mit.edu	36	9	122917289	122917289	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	122917289	122917289	A	C	SNP	CEP110	NM_007018	human	genbank	54_36p	1	reviewed	missense	c.1445	p.Q482P	0.8	NULL	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00365,superfamily_L domain-like"	-	no_errors
CEP110	11064	broad.mit.edu	36	9	122962300	122962300	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	122962300	122962300	T	C	SNP	CEP110	NM_007018	human	genbank	54_36p	1	reviewed	missense	c.4988	p.I1663T	0.99	NULL	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00365,superfamily_L domain-like"	-	no_errors
MRRF	92399	broad.mit.edu	36	9	124115426	124115426	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124115426	124115426	C	G	SNP	MRRF	NM_138777	human	genbank	54_36p	1	validated	missense	c.651	p.N217K	0.94	"superfamily_Ribosome recycling factor RRF,HMMPfam_RRF"	"superfamily_Ribosome recycling factor RRF,HMMPfam_RRF"	-	no_errors
OR1N2	138882	broad.mit.edu	36	9	124355988	124355988	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124355988	124355988	G	T	SNP	OR1N2	NM_001004457	human	genbank	54_36p	1	provisional	missense	c.719	p.W240L	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR1L8	138881	broad.mit.edu	36	9	124370150	124370150	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124370150	124370150	A	G	SNP	OR1L8	NM_001004454	human	genbank	54_36p	-1	provisional	missense	c.428	p.V143A	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR1L8	138881	broad.mit.edu	36	9	124370412	124370412	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124370412	124370412	G	C	SNP	OR1L8	NM_001004454	human	genbank	54_36p	-1	provisional	missense	c.166	p.L56V	0.79	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR1L1	26737	broad.mit.edu	36	9	124464064	124464064	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124464064	124464064	G	A	SNP	OR1L1	NM_001005236	human	genbank	54_36p	1	validated	silent	c.399	p.V133	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR1K1	392392	broad.mit.edu	36	9	124602616	124602616	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124602616	124602616	C	T	SNP	OR1K1	NM_080859	human	genbank	54_36p	1	provisional	missense	c.394	p.P132S	0.99	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
RABGAP1	23637	broad.mit.edu	36	9	124786734	124786734	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124786734	124786734	C	G	SNP	RABGAP1	NM_012197	human	genbank	54_36p	1	validated	silent	c.84	p.L28	0.53	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
GPR21	2844	broad.mit.edu	36	9	124837235	124837235	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	124837235	124837235	A	G	SNP	GPR21	NM_005294	human	genbank	54_36p	1	provisional	missense	c.569	p.Y190C	0.16	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CRB2	286204	broad.mit.edu	36	9	125172861	125172861	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	125172861	125172861	C	T	SNP	CRB2	NM_173689	human	genbank	54_36p	1	validated	nonsense	c.1708	p.Q570*	0.22	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	-	no_errors
NEK6	10783	broad.mit.edu	36	9	126149888	126149888	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	126149888	126149888	A	G	SNP	NEK6	NM_014397	human	genbank	54_36p	1	validated	missense	c.797	p.Y266C	1	"superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_S_TKc"	"superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
NR6A1	2649	broad.mit.edu	36	9	126356629	126356629	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	9	126356629	126356629	T	A	SNP	NR6A1	NM_033334	human	genbank	54_36p	-1	reviewed	missense	c.184	p.I62F	1	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
OLFML2A	169611	broad.mit.edu	36	9	126601561	126601561	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	126601561	126601561	C	A	SNP	OLFML2A	NM_182487	human	genbank	54_36p	1	validated	silent	c.639	p.T213	0	NULL	"HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
PPP6C	5537	broad.mit.edu	36	9	126956018	126956018	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	9	126956018	126956018	G	A	SNP	PPP6C	NM_002721	human	genbank	54_36p	-1	reviewed	silent	c.447	p.L149	1	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos"	"superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE"	-	no_errors
HSPA5	3309	broad.mit.edu	36	9	127038734	127038734	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	127038734	127038734	G	A	SNP	HSPA5	NM_005347	human	genbank	54_36p	-1	validated	silent	c.1923	p.P641	1	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	"superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain"	-	no_errors
HSPA5	3309	broad.mit.edu	36	9	127038923	127038923	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	127038923	127038923	A	G	SNP	HSPA5	NM_005347	human	genbank	54_36p	-1	validated	silent	c.1734	p.D578	1	"HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain"	"HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain,superfamily_Actin-like ATPase domain"	-	no_errors
HSPA5	3309	broad.mit.edu	36	9	127040367	127040367	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	127040367	127040367	T	A	SNP	HSPA5	NM_005347	human	genbank	54_36p	-1	validated	missense	c.1276	p.I426F	1	"HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain"	"HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain,superfamily_Actin-like ATPase domain"	-	no_errors
MAPKAP1	79109	broad.mit.edu	36	9	127474433	127474433	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	127474433	127474433	C	G	SNP	MAPKAP1	NM_001006617	human	genbank	54_36p	-1	reviewed	missense	c.242	p.R81T	1	HMMPfam_SIN1	"HMMPfam_SIN1,PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
LMX1B	4010	broad.mit.edu	36	9	128495363	128495363	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	128495363	128495363	C	A	SNP	LMX1B	NM_002316	human	genbank	54_36p	1	validated	silent	c.612	p.T204	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ZBTB34	403341	broad.mit.edu	36	9	128681958	128681958	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	128681958	128681958	C	A	SNP	ZBTB34	NM_001099270	human	genbank	54_36p	1	validated	missense	c.447	p.N149K	0.96	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF79	7633	broad.mit.edu	36	9	129238088	129238088	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129238088	129238088	C	T	SNP	ZNF79	NM_007135	human	genbank	54_36p	1	validated	nonsense	c.313	p.R105*	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF79	7633	broad.mit.edu	36	9	129246967	129246967	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129246967	129246967	C	T	SNP	ZNF79	NM_007135	human	genbank	54_36p	1	validated	silent	c.1167	p.Y389	0.65	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
TTC16	158248	broad.mit.edu	36	9	129522388	129522389	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	129522388	129522389	-	G	INS	TTC16	NM_144965	human	genbank	54_36p	1	provisional	frame_shift_ins	c.550_551	p.K184fs	0.104:0.062	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
TTC16	158248	broad.mit.edu	36	9	129529464	129529464	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129529464	129529464	C	G	SNP	TTC16	NM_144965	human	genbank	54_36p	1	provisional	missense	c.1663	p.L555V	0	NULL	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
TTC16	158248	broad.mit.edu	36	9	129532747	129532747	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129532747	129532747	G	A	SNP	TTC16	NM_144965	human	genbank	54_36p	1	provisional	missense	c.1864	p.G622S	0	NULL	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
SH2D3C	10044	broad.mit.edu	36	9	129551356	129551356	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	129551356	129551356	C	A	SNP	SH2D3C	NM_170600	human	genbank	54_36p	-1	validated	missense	c.1094	p.G365V	1	NULL	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Ras GEF,HMMSmart_SM00147"	-	no_errors
FPGS	2356	broad.mit.edu	36	9	129609159	129609159	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129609159	129609159	G	A	SNP	FPGS	NM_004957	human	genbank	54_36p	1	reviewed	missense	c.473	p.R158H	0.99	superfamily_MurD-like peptide ligases catalytic domain	"superfamily_MurD-like peptide ligases catalytic domain,PatternScan_FOLYLPOLYGLU_SYNT_1,PatternScan_FOLYLPOLYGLU_SYNT_2,HMMPfam_Mur_ligase_C,superfamily_MurD-like peptide ligases peptide-binding domain"	-	no_errors
ENG	2022	broad.mit.edu	36	9	129627395	129627395	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129627395	129627395	A	G	SNP	ENG	NM_000118	human	genbank	54_36p	-1	reviewed	missense	c.752	p.L251P	0.98	NULL	HMMPfam_Zona_pellucida	-	no_errors
FAM102A	399665	broad.mit.edu	36	9	129746965	129746965	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129746965	129746965	G	A	SNP	FAM102A	NM_001035254	human	genbank	54_36p	-1	validated	silent	c.951	p.T317	1	NULL	HMMPfam_Eeig1	-	no_errors
FAM102A	399665	broad.mit.edu	36	9	129747626	129747626	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129747626	129747626	G	A	SNP	FAM102A	NM_001035254	human	genbank	54_36p	-1	validated	missense	c.758	p.S253L	1	NULL	HMMPfam_Eeig1	-	no_errors
FAM102A	399665	broad.mit.edu	36	9	129750189	129750190	+	Missense_Mutation	DNP	GC	GC	AG	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129750189	129750190	GC	AG	DNP	FAM102A	NM_001035254	human	genbank	54_36p	-1	validated	missense	c.598_597	p.P200S	1.000:0.991	NULL	HMMPfam_Eeig1	-	no_errors
C9orf16	79095	broad.mit.edu	36	9	129965712	129965712	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	129965712	129965712	C	G	SNP	C9orf16	NM_024112	human	genbank	54_36p	1	validated	silent	c.249	p.P83	0.41	HMMPfam_UPF0184	HMMPfam_UPF0184	-	no_errors
TRUB2	26995	broad.mit.edu	36	9	130111720	130111720	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	130111720	130111720	C	T	SNP	TRUB2	NM_015679	human	genbank	54_36p	-1	provisional	missense	c.926	p.S309N	0	NULL	"superfamily_PsdUridine_synth_cat_dom,HMMPfam_TruB_N"	-	no_errors
SLC27A4	10999	broad.mit.edu	36	9	130162578	130162578	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130162578	130162578	A	G	SNP	SLC27A4	NM_005094	human	genbank	54_36p	1	provisional	missense	c.1919	p.E640G	0.9	NULL	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_LIPOCALIN,PatternScan_AMP_BINDING"	-	no_errors
CERCAM	51148	broad.mit.edu	36	9	130237816	130237816	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130237816	130237816	C	T	SNP	CERCAM	ENST00000360536	human	ensembl	54_36p	1	known	missense	c.460	p.R154C	0.07	HMMPfam_Glyco_transf_25	HMMPfam_Glyco_transf_25	-	no_errors
ODF2	4957	broad.mit.edu	36	9	130273486	130273486	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	130273486	130273486	C	G	SNP	ODF2	NM_002540	human	genbank	54_36p	1	reviewed	missense	c.427	p.H143D	0.88	NULL	NULL	-	no_errors
SPTAN1	6709	broad.mit.edu	36	9	130368968	130368968	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	130368968	130368968	C	T	SNP	SPTAN1	NM_003127	human	genbank	54_36p	1	validated	missense	c.128	p.S43F	1	superfamily_Spectrin repeat	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen"	-	no_errors
SPTAN1	6709	broad.mit.edu	36	9	130400554	130400554	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	130400554	130400554	C	G	SNP	SPTAN1	NM_003127	human	genbank	54_36p	1	validated	missense	c.3469	p.L1157V	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
SPTAN1	6709	broad.mit.edu	36	9	130426519	130426519	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	130426519	130426519	C	T	SNP	SPTAN1	NM_003127	human	genbank	54_36p	1	validated	missense	c.5909	p.A1970V	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
SPTAN1	6709	broad.mit.edu	36	9	130428779	130428779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130428779	130428779	A	G	SNP	SPTAN1	NM_003127	human	genbank	54_36p	1	validated	missense	c.6553	p.I2185V	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand"	-	no_errors
ZDHHC12	84885	broad.mit.edu	36	9	130526129	130526129	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130526129	130526129	C	T	SNP	ZDHHC12	NM_032799	human	genbank	54_36p	-1	validated	nonsense	c.65	p.W22*	1	NULL	HMMPfam_zf-DHHC	-	no_errors
C9orf114	51490	broad.mit.edu	36	9	130629169	130629169	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130629169	130629169	C	T	SNP	C9orf114	NM_016390	human	genbank	54_36p	-1	validated	missense	c.331	p.E111K	1	"superfamily_SSF75217,HMMPfam_DUF171"	"superfamily_SSF75217,HMMPfam_DUF171,superfamily_Nucleic_acid_OB"	-	no_errors
CCBL1	883	broad.mit.edu	36	9	130639832	130639832	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	130639832	130639832	G	A	SNP	CCBL1	NM_004059	human	genbank	54_36p	-1	reviewed	missense	c.520	p.R174C	0.83	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	-	no_errors
LRRC8A	56262	broad.mit.edu	36	9	130710429	130710429	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130710429	130710429	C	G	SNP	LRRC8A	NM_019594	human	genbank	54_36p	1	reviewed	missense	c.1165	p.R389G	1	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1"	-	no_errors
DOLK	22845	broad.mit.edu	36	9	130748299	130748299	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	9	130748299	130748299	C	A	SNP	DOLK	NM_014908	human	genbank	54_36p	-1	validated	missense	c.1105	p.V369F	0.97	NULL	NULL	-	no_errors
NUP188	23511	broad.mit.edu	36	9	130782721	130782721	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130782721	130782721	C	G	SNP	NUP188	NM_015354	human	genbank	54_36p	1	validated	missense	c.1285	p.L429V	0.99	HMMPfam_Nup188	HMMPfam_Nup188	-	no_errors
NUP188	23511	broad.mit.edu	36	9	130808641	130808642	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130808641	130808642	GG	AA	DNP	NUP188	NM_015354	human	genbank	54_36p	1	validated	missense	c.5113_5114	p.G1705K	1.000:1.000	NULL	HMMPfam_Nup188	-	no_errors
SH3GLB2	56904	broad.mit.edu	36	9	130816948	130816948	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	130816948	130816948	C	A	SNP	SH3GLB2	NM_020145	human	genbank	54_36p	-1	provisional	missense	c.391	p.D131Y	1	"HMMSmart_SM00721,HMMPfam_BAR"	"HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
C9orf106	414318	broad.mit.edu	36	9	131124423	131124423	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	131124423	131124423	C	T	SNP	C9orf106	NM_001012715	human	genbank	54_36p	1	validated	silent	c.510	p.L170	0	NULL	NULL	-	no_errors
TOR1A	1861	broad.mit.edu	36	9	131620928	131620928	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	131620928	131620928	G	A	SNP	TOR1A	NM_000113	human	genbank	54_36p	-1	reviewed	silent	c.537	p.L179	1	"HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
C9orf78	51759	broad.mit.edu	36	9	131637305	131637305	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	131637305	131637305	T	G	SNP	C9orf78	NM_016520	human	genbank	54_36p	-1	validated	missense	c.17	p.K6T	0.98	NULL	HMMPfam_Hep_59	-	no_errors
USP20	10868	broad.mit.edu	36	9	131671877	131671877	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	131671877	131671877	C	T	SNP	USP20	NM_001008563	human	genbank	54_36p	1	validated	missense	c.1498	p.P500S	1	"superfamily_SSF54001,HMMPfam_UCH"	"HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,HMMSmart_DUSP"	-	no_errors
FUBP3	8939	broad.mit.edu	36	9	132495968	132495968	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	132495968	132495968	C	A	SNP	FUBP3	NM_003934	human	genbank	54_36p	1	validated	missense	c.1250	p.A417D	1	"superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	"superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	-	no_errors
FUBP3	8939	broad.mit.edu	36	9	132501298	132501298	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	132501298	132501298	C	T	SNP	FUBP3	NM_003934	human	genbank	54_36p	1	validated	silent	c.1674	p.Y558	1	NULL	"HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)"	-	no_errors
PRDM12	59335	broad.mit.edu	36	9	132531972	132531972	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	132531972	132531972	T	G	SNP	PRDM12	NM_021619	human	genbank	54_36p	1	validated	missense	c.380	p.V127G	1	"superfamily_SET domain,HMMSmart_SM00317"	"superfamily_SET domain,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ABL1	25	broad.mit.edu	36	9	132720016	132720016	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	132720016	132720016	G	C	SNP	ABL1	NM_007313	human	genbank	54_36p	1	reviewed	missense	c.318	p.K106N	1	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMC3	10319	broad.mit.edu	36	9	132926412	132926413	+	Missense_Mutation	DNP	CT	CT	GA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	132926412	132926413	CT	GA	DNP	LAMC3	NM_006059	human	genbank	54_36p	1	reviewed	missense	c.2328_2329	p.HC776QS	1.000:1.000	"HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_LAM_1"	"HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Laminin_B,PatternScan_EGF_2"	-	no_errors
LAMC3	10319	broad.mit.edu	36	9	132944454	132944454	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	132944454	132944454	C	A	SNP	LAMC3	NM_006059	human	genbank	54_36p	1	reviewed	missense	c.3875	p.T1292N	0	NULL	"HMMPfam_Laminin_B,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196"	-	no_errors
NUP214	8021	broad.mit.edu	36	9	133098694	133098694	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	133098694	133098694	G	A	SNP	NUP214	NM_005085	human	genbank	54_36p	1	reviewed	silent	c.6272	p.*2091	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	-	no_errors
BAT2L1	84726	broad.mit.edu	36	9	133297870	133297870	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	133297870	133297870	C	A	SNP	BAT2L	NM_013318	human	genbank	54_36p	1	validated	missense	c.161	p.A54D	1	HMMPfam_BAT2_N	HMMPfam_BAT2_N	-	no_errors
NTNG2	84628	broad.mit.edu	36	9	134063273	134063273	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	134063273	134063273	A	C	SNP	NTNG2	NM_032536	human	genbank	54_36p	1	validated	missense	c.313	p.T105P	1	"HMMSmart_SM00136,HMMPfam_Laminin_N"	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2"	-	no_errors
TTF1	7270	broad.mit.edu	36	9	134253418	134253418	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	134253418	134253418	C	A	SNP	TTF1	NM_007344	human	genbank	54_36p	-1	validated	missense	c.2241	p.K747N	1	HMMSmart_SANT	"HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	-	no_errors
GTF3C4	9329	broad.mit.edu	36	9	134543966	134543966	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	134543966	134543966	A	G	SNP	GTF3C4	NM_012204	human	genbank	54_36p	1	validated	missense	c.1139	p.Y380C	0.76	NULL	NULL	-	no_errors
TSC1	7248	broad.mit.edu	36	9	134766887	134766888	+	Missense_Mutation	DNP	CC	CC	TG	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	134766887	134766888	CC	TG	DNP	TSC1	NM_000368	human	genbank	54_36p	-1	validated	missense	c.2412_2411	p.R804T	0.999:1.000	NULL	HMMPfam_Hamartin	-	no_errors
TSC1	7248	broad.mit.edu	36	9	134767960	134767960	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	134767960	134767960	C	T	SNP	TSC1	NM_000368	human	genbank	54_36p	-1	validated	silent	c.2244	p.Q748	1	NULL	HMMPfam_Hamartin	-	no_errors
TSC1	7248	broad.mit.edu	36	9	134768895	134768905	+	Frame_Shift_Del	DEL	GATCACCTTGC	-	GATCACCTTGC	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GATCACCTTGC	GATCACCTTGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	9	134768895	134768905	GATCACCTTGC	-	DEL	TSC1	NM_000368	human	genbank	54_36p	-1	validated	frame_shift_del	c.2172_2162	p.R721fs	0.997:1.000:1.000:1.000:1.000:1.000:0.998:0.997:0.993:0.954:1.000	NULL	HMMPfam_Hamartin	"(deletion:cds_exon[134768859,134769025])"	no_errors
SURF6	6838	broad.mit.edu	36	9	135189382	135189382	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	135189382	135189382	C	T	SNP	SURF6	NM_006753	human	genbank	54_36p	-1	reviewed	silent	c.429	p.E143	1	HMMPfam_SURF6	HMMPfam_SURF6	-	no_errors
MED22	6837	broad.mit.edu	36	9	135200886	135200886	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	135200886	135200886	C	T	SNP	MED22	NM_133640	human	genbank	54_36p	-1	reviewed	missense	c.328	p.E110K	1	HMMPfam_SURF5	HMMPfam_SURF5	-	no_errors
SURF1	6834	broad.mit.edu	36	9	135208748	135208748	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135208748	135208748	G	T	SNP	SURF1	NM_003172	human	genbank	54_36p	-1	reviewed	nonsense	c.822	p.Y274*	1	HMMPfam_SURF1	HMMPfam_SURF1	-	no_errors
SURF1	6834	broad.mit.edu	36	9	135208769	135208769	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135208769	135208769	C	G	SNP	SURF1	NM_003172	human	genbank	54_36p	-1	reviewed	silent	c.801	p.L267	1	HMMPfam_SURF1	HMMPfam_SURF1	-	no_errors
REXO4	57109	broad.mit.edu	36	9	135272783	135272783	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135272783	135272783	C	G	SNP	REXO4	NM_020385	human	genbank	54_36p	-1	validated	missense	c.3	p.M1I	0.19	NULL	"superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T"	-	no_errors
ADAMTS13	11093	broad.mit.edu	36	9	135293271	135293271	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	135293271	135293271	C	T	SNP	ADAMTS13	NM_139025	human	genbank	54_36p	1	reviewed	missense	c.1669	p.P557S	0.01	NULL	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M10,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Spermadhesin CUB domain"	-	no_errors
C9orf7	11094	broad.mit.edu	36	9	135322963	135322963	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135322963	135322963	G	T	SNP	C9orf7	NM_017586	human	genbank	54_36p	1	validated	silent	c.420	p.L140	1	HMMPfam_Cg6151-P	HMMPfam_Cg6151-P	-	no_errors
ADAMTSL2	9719	broad.mit.edu	36	9	135402129	135402129	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	135402129	135402129	G	T	SNP	ADAMTSL2	NM_014694	human	genbank	54_36p	1	reviewed	silent	c.912	p.G304	0.98	HMMPfam_ADAM_spacer1	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
DBH	1621	broad.mit.edu	36	9	135491549	135491549	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135491549	135491549	C	T	SNP	DBH	NM_000787	human	genbank	54_36p	1	reviewed	missense	c.235	p.R79W	0.03	"HMMSmart_DoH,HMMPfam_DOMON"	"HMMSmart_DoH,HMMPfam_DOMON,superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2"	-	no_errors
DBH	1621	broad.mit.edu	36	9	135502794	135502794	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135502794	135502794	A	C	SNP	DBH	NM_000787	human	genbank	54_36p	1	reviewed	missense	c.1030	p.N344H	0.01	"HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F"	"HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMSmart_DoH,superfamily_PHM_PNGase_F,HMMPfam_DOMON,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2"	-	no_errors
VAV2	7410	broad.mit.edu	36	9	135646794	135646794	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135646794	135646794	T	G	SNP	VAV2	NM_003371	human	genbank	54_36p	-1	reviewed	missense	c.1105	p.N369H	1	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF"	###############################################################################################################################################################################################################################################################	-	no_errors
VAV2	7410	broad.mit.edu	36	9	135667107	135667107	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	135667107	135667107	C	G	SNP	VAV2	NM_003371	human	genbank	54_36p	-1	reviewed	missense	c.502	p.G168R	1	superfamily_Calponin-homology	###############################################################################################################################################################################################################################################################	-	no_errors
BRD3	8019	broad.mit.edu	36	9	135907364	135907364	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	135907364	135907364	T	C	SNP	BRD3	NM_007371	human	genbank	54_36p	-1	reviewed	missense	c.236	p.N79S	1	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	"superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
RXRA	6256	broad.mit.edu	36	9	136465823	136465823	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	136465823	136465823	A	G	SNP	RXRA	NM_002957	human	genbank	54_36p	1	reviewed	missense	c.1190	p.Y397C	1	"superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
COL5A1	1289	broad.mit.edu	36	9	136799012	136799012	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	9	136799012	136799012	A	T	SNP	COL5A1	NM_000093	human	genbank	54_36p	1	reviewed	silent	c.2223	p.P741	1	HMMPfam_Collagen	"HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI"	-	no_errors
COL5A1	1289	broad.mit.edu	36	9	136856317	136856317	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	136856317	136856317	G	A	SNP	COL5A1	NM_000093	human	genbank	54_36p	1	reviewed	silent	c.4749	p.T1583	0.98	NULL	"HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
COL5A1	1289	broad.mit.edu	36	9	136857473	136857473	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	9	136857473	136857473	G	A	SNP	COL5A1	NM_000093	human	genbank	54_36p	1	reviewed	missense	c.4969	p.D1657N	1	"HMMPfam_COLFI,HMMSmart_COLFI"	"HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	-	no_errors
FCN2	2220	broad.mit.edu	36	9	136918991	136918991	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	136918991	136918991	A	G	SNP	FCN2	NM_004108	human	genbank	54_36p	1	reviewed	missense	c.851	p.H284R	0	"HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like"	"HMMPfam_Collagen,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
FCN1	2219	broad.mit.edu	36	9	136949470	136949470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	136949470	136949470	C	G	SNP	FCN1	NM_002003	human	genbank	54_36p	-1	reviewed	missense	c.69	p.K23N	0	NULL	"HMMPfam_Collagen,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_LIPOCALIN,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
KIAA0649	9858	broad.mit.edu	36	9	137516351	137516351	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	137516351	137516351	G	T	SNP	KIAA0649	NM_014811	human	genbank	54_36p	1	validated	silent	c.174	p.G58	0.24	NULL	NULL	-	no_errors
KIAA0649	9858	broad.mit.edu	36	9	137518017	137518017	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	137518017	137518017	G	C	SNP	KIAA0649	NM_014811	human	genbank	54_36p	1	validated	missense	c.1840	p.V614L	0	NULL	NULL	-	no_errors
C9orf116	138162	broad.mit.edu	36	9	137527258	137527258	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	137527258	137527258	T	C	SNP	C9orf116	NM_001048265	human	genbank	54_36p	-1	validated	missense	c.247	p.K83E	0.02	NULL	NULL	-	no_errors
CAMSAP1	157922	broad.mit.edu	36	9	137843003	137843003	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	137843003	137843003	C	A	SNP	CAMSAP1	NM_015447	human	genbank	54_36p	-1	validated	silent	c.3948	p.V1316	0.99	superfamily_PRC-barrel domain	"superfamily_PRC-barrel domain,HMMPfam_DUF1781"	-	no_errors
CAMSAP1	157922	broad.mit.edu	36	9	137853528	137853528	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	137853528	137853528	G	A	SNP	CAMSAP1	NM_015447	human	genbank	54_36p	-1	validated	missense	c.1966	p.H656Y	0.01	NULL	"superfamily_PRC-barrel domain,HMMPfam_DUF1781"	-	no_errors
CAMSAP1	157922	broad.mit.edu	36	9	137853823	137853823	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	137853823	137853823	G	C	SNP	CAMSAP1	NM_015447	human	genbank	54_36p	-1	validated	missense	c.1671	p.S557R	1	NULL	"superfamily_PRC-barrel domain,HMMPfam_DUF1781"	-	no_errors
QSOX2	169714	broad.mit.edu	36	9	138240870	138240870	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138240870	138240870	T	C	SNP	QSOX2	NM_181701	human	genbank	54_36p	-1	validated	missense	c.1622	p.E541G	0.9	NULL	"superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,superfamily_Evr1_Alr,HMMPfam_Evr1_Alr"	-	no_errors
QSOX2	169714	broad.mit.edu	36	9	138277253	138277253	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138277253	138277253	C	T	SNP	QSOX2	NM_181701	human	genbank	54_36p	-1	validated	missense	c.218	p.G73E	0.95	superfamily_Thiordxn-like_fd	"HMMPfam_Evr1_Alr,superfamily_Evr1_Alr,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin"	-	no_errors
PMPCA	23203	broad.mit.edu	36	9	138428909	138428909	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138428909	138428909	C	T	SNP	PMPCA	NM_015160	human	genbank	54_36p	1	provisional	missense	c.521	p.P174L	1	"superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16"	"superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C"	-	no_errors
PMPCA	23203	broad.mit.edu	36	9	138431397	138431397	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138431397	138431397	G	C	SNP	PMPCA	NM_015160	human	genbank	54_36p	1	provisional	missense	c.807	p.K269N	1	"HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase"	"PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16"	-	no_errors
SEC16A	9919	broad.mit.edu	36	9	138461944	138461944	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138461944	138461944	G	A	SNP	SEC16A	NM_014866	human	genbank	54_36p	-1	validated	missense	c.6457	p.P2153S	0.99	NULL	NULL	-	no_errors
SEC16A	9919	broad.mit.edu	36	9	138462402	138462402	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138462402	138462402	T	G	SNP	SEC16A	NM_014866	human	genbank	54_36p	-1	validated	silent	c.6345	p.G2115	0.49	NULL	NULL	-	no_errors
SEC16A	9919	broad.mit.edu	36	9	138489835	138489835	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138489835	138489835	G	A	SNP	SEC16A	NM_014866	human	genbank	54_36p	-1	validated	missense	c.2054	p.A685V	0	NULL	NULL	-	no_errors
NOTCH1	4851	broad.mit.edu	36	9	138511033	138511033	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	138511033	138511033	G	A	SNP	NOTCH1	NM_017617	human	genbank	54_36p	-1	reviewed	missense	c.6979	p.R2327W	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH1	4851	broad.mit.edu	36	9	138516325	138516325	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	ManualReview			Illumina GAIIx	9	138516325	138516325	G	A	SNP	NOTCH1	NM_017617	human	genbank	54_36p	-1	reviewed	silent	c.5421	p.D1807	0.95	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
EGFL7	51162	broad.mit.edu	36	9	138686547	138686547	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	138686547	138686547	G	A	SNP	EGFL7	NM_016215	human	genbank	54_36p	1	validated	silent	c.810	p.K270	0.98	NULL	"HMMPfam_EMI,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL"	-	no_errors
PTGDS	5730	broad.mit.edu	36	9	138994271	138994271	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	138994271	138994271	C	A	SNP	PTGDS	NM_000954	human	genbank	54_36p	1	reviewed	nonsense	c.384	p.Y128*	0.15	"superfamily_Lipocalins,HMMPfam_Lipocalin"	"superfamily_Lipocalins,PatternScan_LIPOCALIN,HMMPfam_Lipocalin"	-	no_errors
FUT7	2529	broad.mit.edu	36	9	139045318	139045319	+	Frame_Shift_Del	DEL	GA	-	-	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139045318	139045319	GA	-	DEL	FUT7	NM_004479	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.694_693	p.Q232fs	0.944:0.862	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	"(deletion:cds_exon[139044983,139045998])"	no_errors
MAN1B1	11253	broad.mit.edu	36	9	139103163	139103163	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139103163	139103163	A	T	SNP	MAN1B1	NM_016219	human	genbank	54_36p	1	validated	missense	c.350	p.E117V	0.9	NULL	"superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47"	-	no_errors
DPP7	29952	broad.mit.edu	36	9	139127677	139127677	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139127677	139127677	G	A	SNP	DPP7	NM_013379	human	genbank	54_36p	-1	reviewed	missense	c.578	p.A193V	0.89	"HMMPfam_Peptidase_S28,superfamily_SSF53474"	"HMMPfam_Peptidase_S28,superfamily_SSF53474"	-	no_errors
ANAPC2	29882	broad.mit.edu	36	9	139194469	139194469	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	139194469	139194469	C	A	SNP	ANAPC2	NM_013366	human	genbank	54_36p	-1	reviewed	missense	c.1875	p.K625N	1	"HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182"	"HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_Winged helix DNA-binding domain,HMMPfam_APC2"	-	no_errors
SLC34A3	142680	broad.mit.edu	36	9	139246415	139246415	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139246415	139246415	C	A	SNP	SLC34A3	NM_080877	human	genbank	54_36p	1	validated	missense	c.156	p.D52E	0.03	NULL	HMMPfam_Na_Pi_cotrans	-	no_errors
TUBB2C	10383	broad.mit.edu	36	9	139257542	139257542	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139257542	139257542	A	T	SNP	TUBB2C	NM_006088	human	genbank	54_36p	1	validated	missense	c.1051	p.T351S	1	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
TUBB2C	10383	broad.mit.edu	36	9	139257713	139257713	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	139257713	139257713	T	A	SNP	TUBB2C	NM_006088	human	genbank	54_36p	1	validated	missense	c.1222	p.F408I	1	superfamily_Tubulin C-terminal domain-like	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
FAM166A	401565	broad.mit.edu	36	9	139258058	139258058	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	139258058	139258058	A	T	SNP	FAM166A	NM_001001710	human	genbank	54_36p	-1	predicted	missense	c.869	p.M290K	0.9	NULL	HMMPfam_DUF2475	-	no_errors
FAM166A	401565	broad.mit.edu	36	9	139259684	139259684	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139259684	139259684	G	C	SNP	FAM166A	NM_001001710	human	genbank	54_36p	-1	predicted	missense	c.418	p.P140A	0.97	NULL	HMMPfam_DUF2475	-	no_errors
C9orf167	54863	broad.mit.edu	36	9	139292970	139292970	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139292970	139292970	G	A	SNP	C9orf167	NM_017723	human	genbank	54_36p	1	validated	missense	c.8	p.R3H	0.86	NULL	"HMMPfam_Torsin,superfamily_SSF52540,HMMSmart_AAA"	-	no_errors
EHMT1	79813	broad.mit.edu	36	9	139791040	139791040	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	9	139791040	139791040	C	T	SNP	EHMT1	NM_024757	human	genbank	54_36p	1	reviewed	silent	c.1848	p.T616	0.69	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SET domain,HMMSmart_SM00468,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
CACNA1B	774	broad.mit.edu	36	9	140074012	140074012	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	140074012	140074012	T	A	SNP	CACNA1B	NM_000718	human	genbank	54_36p	1	validated	splice_site	c.4668+2	e31+2	1	-	-	-	no_errors
TUBB8	347688	broad.mit.edu	36	10	83410	83410	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	83410	83410	C	A	SNP	TUBB8	NM_177987	human	genbank	54_36p	-1	provisional	missense	c.922	p.G308C	1	"superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	-	no_errors
DIP2C	22982	broad.mit.edu	36	10	426258	426258	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	10	426258	426258	G	C	SNP	DIP2C	NM_014974	human	genbank	54_36p	-1	reviewed	silent	c.1440	p.P480	0.99	"HMMPfam_AMP-binding,superfamily_SSF56801"	"HMMPfam_AMP-binding,HMMPfam_DMAP_binding,PatternScan_AMP_BINDING,superfamily_SSF56801"	-	no_errors
LARP4B	23185	broad.mit.edu	36	10	861158	861158	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	861158	861158	C	T	SNP	LARP5	NM_015155	human	genbank	54_36p	-1	provisional	missense	c.1331	p.R444Q	0.99	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00715,HMMPfam_La"	-	no_errors
GTPBP4	23560	broad.mit.edu	36	10	1036802	1036802	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	1036802	1036802	C	T	SNP	GTPBP4	NM_012341	human	genbank	54_36p	1	reviewed	silent	c.840	p.I280	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NOG1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NOG1,HMMPfam_NOGCT"	-	no_errors
PFKP	5214	broad.mit.edu	36	10	3164604	3164604	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	3164604	3164604	G	C	SNP	PFKP	NM_002627	human	genbank	54_36p	1	validated	missense	c.1881	p.K627N	1	"superfamily_Phosphofructokinase,HMMPfam_PFK"	"HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE"	-	no_errors
AKR1C1	1645	broad.mit.edu	36	10	4998131	4998131	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	4998131	4998131	C	A	SNP	AKR1C1	NM_001353	human	genbank	54_36p	1	reviewed	missense	c.110	p.A37D	0.98	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red"	"superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3"	-	no_errors
AKR1C1	1645	broad.mit.edu	36	10	4998151	4998151	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	4998151	4998151	G	A	SNP	AKR1C1	NM_001353	human	genbank	54_36p	1	reviewed	missense	c.130	p.A44T	0	"HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red"	"HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3,PatternScan_ALDOKETO_REDUCTASE_1"	-	no_errors
CALML5	51806	broad.mit.edu	36	10	5531328	5531328	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	5531328	5531328	T	C	SNP	CALML5	NM_017422	human	genbank	54_36p	-1	reviewed	missense	c.74	p.N25S	0.93	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
ASB13	79754	broad.mit.edu	36	10	5723803	5723803	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	5723803	5723803	C	A	SNP	ASB13	NM_024701	human	genbank	54_36p	-1	reviewed	silent	c.645	p.G215	0.99	superfamily_Ankyrin repeat	"HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_SOCS_box"	-	no_errors
C10orf18	54906	broad.mit.edu	36	10	5829069	5829069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	5829069	5829069	G	A	SNP	C10orf18	NM_017782	human	genbank	54_36p	1	validated	missense	c.3679	p.G1227R	0	NULL	NULL	-	no_errors
C10orf18	54906	broad.mit.edu	36	10	5830331	5830331	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	5830331	5830331	A	C	SNP	C10orf18	NM_017782	human	genbank	54_36p	1	validated	silent	c.4941	p.T1647	0	NULL	NULL	-	no_errors
FBXO18	84893	broad.mit.edu	36	10	6018425	6018425	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	6018425	6018425	G	C	SNP	FBXO18	NM_032807	human	genbank	54_36p	1	reviewed	missense	c.2983	p.E995Q	1	superfamily_SSF52540	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540"	-	no_errors
IL2RA	3559	broad.mit.edu	36	10	6103503	6103503	+	Missense_Mutation	SNP	C	C	T	rs55841382	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	6103503	6103503	C	T	SNP	IL2RA	NM_000417	human	genbank	54_36p	-1	reviewed	missense	c.527	p.R176K	0.01	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	"HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module"	-	no_errors
PFKFB3	5209	broad.mit.edu	36	10	6301558	6301558	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	6301558	6301558	G	A	SNP	PFKFB3	NM_004566	human	genbank	54_36p	1	validated	silent	c.519	p.P173	0.89	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like,PatternScan_PG_MUTASE"	-	no_errors
PFKFB3	5209	broad.mit.edu	36	10	6302685	6302685	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	6302685	6302685	C	T	SNP	PFKFB3	NM_004566	human	genbank	54_36p	1	validated	nonsense	c.682	p.Q228*	1	"HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"PatternScan_PG_MUTASE,HMMPfam_PGAM,HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Phosphoglycerate mutase-like"	-	no_errors
PRKCQ	5588	broad.mit.edu	36	10	6510308	6510308	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	6510308	6510308	T	C	SNP	PRKCQ	NM_006257	human	genbank	54_36p	-1	reviewed	missense	c.1988	p.N663S	1	"HMMSmart_SM00133,HMMPfam_Pkinase_C"	###############################################################################################################################################################################################################################################################	-	no_errors
PRKCQ	5588	broad.mit.edu	36	10	6544284	6544284	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	6544284	6544284	C	A	SNP	PRKCQ	NM_006257	human	genbank	54_36p	-1	reviewed	nonsense	c.1495	p.G499*	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
PRKCQ	5588	broad.mit.edu	36	10	6565544	6565562	+	Frame_Shift_Del	DEL	GACTCCCAGGAAATGCCCT	-	GACTCCCAGGAAATGCCCT	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	GACTCCCAGGAAATGCCCT	GACTCCCAGGAAATGCCCT	-	-	GACTCCCAGGAAATGCCCT	GACTCCCAGGAAATGCCCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	6565544	6565562	GACTCCCAGGAAATGCCCT	-	DEL	PRKCQ	NM_006257	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1043_1025	p.Q342fs	0.994:0.992:0.990:1.000:1.000:1.000:1.000:1.000:0.991:0.999:0.991:0.866:0.898:0.814:0.609:0.992:0.998:0.996:0.999	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[6565408,6565568])"	no_errors
SFMBT2	57713	broad.mit.edu	36	10	7279552	7279552	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	7279552	7279552	C	T	SNP	SFMBT2	NM_001029880	human	genbank	54_36p	-1	provisional	silent	c.1662	p.S554	0.65	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2"	-	no_errors
SFMBT2	57713	broad.mit.edu	36	10	7449840	7449840	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	7449840	7449840	C	G	SNP	SFMBT2	NM_001029880	human	genbank	54_36p	-1	provisional	missense	c.213	p.Q71H	1	"HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT"	"HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_Tudor/PWWP/MBT"	-	no_errors
SFMBT2	57713	broad.mit.edu	36	10	7452280	7452280	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	7452280	7452280	G	A	SNP	SFMBT2	NM_001029880	human	genbank	54_36p	-1	provisional	missense	c.164	p.A55V	0.21	"HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT"	"HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_Tudor/PWWP/MBT"	-	no_errors
ITIH5	80760	broad.mit.edu	36	10	7658806	7658806	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	7658806	7658806	C	G	SNP	ITIH5	NM_030569	human	genbank	54_36p	-1	validated	missense	c.1594	p.A532P	1	NULL	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like"	-	no_errors
ITIH5	80760	broad.mit.edu	36	10	7658958	7658958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	7658958	7658958	G	A	SNP	ITIH5	NM_030569	human	genbank	54_36p	-1	validated	missense	c.1442	p.P481L	1	superfamily_vWA-like	"HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like"	-	no_errors
ITIH2	3698	broad.mit.edu	36	10	7791086	7791086	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	7791086	7791086	C	A	SNP	ITIH2	NM_002216	human	genbank	54_36p	1	validated	missense	c.288	p.N96K	1	"HMMSmart_VIT,HMMPfam_VIT"	"HMMPfam_VWA,HMMSmart_VWA,HMMSmart_VIT,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_SSF53300"	-	no_errors
TAF3	83860	broad.mit.edu	36	10	8047174	8047174	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	8047174	8047174	C	T	SNP	TAF3	NM_031923	human	genbank	54_36p	1	provisional	silent	c.1695	p.D565	0.95	NULL	"HMMPfam_Bromo_TP,HMMSmart_BTP,superfamily_Histone-fold,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
TAF3	83860	broad.mit.edu	36	10	8047596	8047596	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	8047596	8047596	A	G	SNP	TAF3	NM_031923	human	genbank	54_36p	1	provisional	missense	c.2117	p.K706R	1	NULL	"HMMSmart_PHD,HMMPfam_Bromo_TP,HMMSmart_BTP,superfamily_Histone-fold,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
GATA3	2625	broad.mit.edu	36	10	8140628	8140628	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	8140628	8140628	C	T	SNP	GATA3	NM_001002295	human	genbank	54_36p	1	validated	missense	c.596	p.S199F	0.11	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA"	-	no_errors
UPF2	26019	broad.mit.edu	36	10	12041243	12041243	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	12041243	12041243	C	T	SNP	UPF2	NM_015542	human	genbank	54_36p	-1	reviewed	missense	c.2303	p.R768H	1	superfamily_ARM repeat	"HMMSmart_SM00543,HMMPfam_MIF4G,superfamily_ARM repeat,HMMPfam_Upf2"	-	no_errors
UPF2	26019	broad.mit.edu	36	10	12079761	12079761	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	12079761	12079761	G	C	SNP	UPF2	NM_015542	human	genbank	54_36p	-1	reviewed	missense	c.1760	p.A587G	1	"HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat"	"HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_Upf2,superfamily_ARM repeat"	-	no_errors
SEC61A2	55176	broad.mit.edu	36	10	12239969	12239969	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	12239969	12239969	C	G	SNP	SEC61A2	NM_018144	human	genbank	54_36p	1	reviewed	missense	c.834	p.S278R	1	"superfamily_Preprotein translocase SecY subunit,HMMPfam_SecY"	"superfamily_Preprotein translocase SecY subunit,HMMPfam_Plug_translocon,PatternScan_SECY_1,HMMPfam_SecY,PatternScan_SECY_2"	-	no_errors
NUDT5	11164	broad.mit.edu	36	10	12252907	12252907	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	12252907	12252907	C	A	SNP	NUDT5	NM_014142	human	genbank	54_36p	-1	validated	missense	c.494	p.G165V	0.99	"superfamily_Nudix,HMMPfam_NUDIX"	"superfamily_Nudix,HMMPfam_NUDIX,PatternScan_NUDIX"	-	no_errors
OPTN	10133	broad.mit.edu	36	10	13207996	13207996	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	13207996	13207996	A	C	SNP	OPTN	NM_001008211	human	genbank	54_36p	1	reviewed	missense	c.1193	p.Q398P	0.99	NULL	NULL	-	no_errors
MCM10	55388	broad.mit.edu	36	10	13268189	13268189	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	13268189	13268189	A	T	SNP	MCM10	NM_182751	human	genbank	54_36p	1	reviewed	missense	c.1121	p.H374L	1	NULL	"HMMPfam_zf-primase,HMMPfam_Mcm10"	-	no_errors
BEND7	222389	broad.mit.edu	36	10	13521201	13521202	+	Frame_Shift_Ins	INS	-	TCCC	-	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	13521201	13521202	-	TCCC	INS	BEND7	NM_152751	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1384_1383	p.H461fs	0.006:0.010	NULL	HMMPfam_BEN	-	no_errors
BEND7	222389	broad.mit.edu	36	10	13581899	13581899	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	13581899	13581899	C	T	SNP	BEND7	NM_152751	human	genbank	54_36p	-1	validated	silent	c.177	p.P59	0.02	NULL	HMMPfam_BEN	-	no_errors
FRMD4A	55691	broad.mit.edu	36	10	13843663	13843663	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	13843663	13843663	C	A	SNP	FRMD4A	NM_018027	human	genbank	54_36p	-1	validated	missense	c.454	p.D152Y	1	"HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	"superfamily_SSF54236,HMMSmart_B41,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C"	-	no_errors
HSPA14	51182	broad.mit.edu	36	10	14937856	14937856	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	14937856	14937856	G	C	SNP	HSPA14	NM_016299	human	genbank	54_36p	1	validated	missense	c.901	p.E301Q	1	"HMMPfam_HSP70,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain"	-	no_errors
SUV39H2	79723	broad.mit.edu	36	10	14979166	14979166	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	14979166	14979166	C	G	SNP	SUV39H2	NM_024670	human	genbank	54_36p	1	provisional	missense	c.313	p.P105A	1	"superfamily_SSF82199,HMMPfam_Pre-SET"	"HMMPfam_Chromo,HMMSmart_CHROMO,superfamily_Chromodomain-like,PatternScan_CHROMO_1,superfamily_SSF82199,HMMPfam_Pre-SET,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET"	-	no_errors
DCLRE1C	64421	broad.mit.edu	36	10	15021860	15021860	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	15021860	15021860	G	T	SNP	DCLRE1C	NM_001033855	human	genbank	54_36p	-1	reviewed	silent	c.261	p.I87	1	superfamily_Metallo-hydrolase/oxidoreductase	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_DRMBL"	-	no_errors
RPP38	10557	broad.mit.edu	36	10	15185382	15185382	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	15185382	15185382	G	T	SNP	RPP38	NM_001097590	human	genbank	54_36p	1	validated	silent	c.63	p.V21	0.64	NULL	"superfamily_SSF55315,HMMPfam_Ribosomal_L7Ae"	-	no_errors
FAM171A1	221061	broad.mit.edu	36	10	15296558	15296558	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	15296558	15296558	A	G	SNP	FAM171A1	NM_001010924	human	genbank	54_36p	-1	validated	silent	c.1035	p.P345	0	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
CUBN	8029	broad.mit.edu	36	10	16951724	16951724	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	16951724	16951724	C	T	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.9371	p.S3124N	0.42	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
CUBN	8029	broad.mit.edu	36	10	16995954	16995954	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	16995954	16995954	A	-	DEL	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.7395	p.N2467fs	1	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"(deletion:cds_exon[16995816,16995997])"	no_errors
CUBN	8029	broad.mit.edu	36	10	17182224	17182224	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	17182224	17182224	A	G	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	silent	c.1551	p.T517	0.92	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
CUBN	8029	broad.mit.edu	36	10	17185131	17185131	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	17185131	17185131	T	G	SNP	CUBN	NM_001081	human	genbank	54_36p	-1	reviewed	missense	c.1529	p.K510T	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
VIM	7431	broad.mit.edu	36	10	17311905	17311905	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	17311905	17311905	C	A	SNP	VIM	NM_003380	human	genbank	54_36p	1	validated	missense	c.478	p.Q160K	1	HMMPfam_Filament	"HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF"	-	no_errors
VIM	7431	broad.mit.edu	36	10	17317384	17317384	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	17317384	17317384	G	A	SNP	VIM	NM_003380	human	genbank	54_36p	1	validated	missense	c.1219	p.E407K	1	HMMPfam_Filament	"HMMPfam_Filament_head,HMMPfam_Filament,PatternScan_IF"	-	no_errors
MRC1L1	414308	broad.mit.edu	36	10	17905243	17905243	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	17905243	17905243	G	A	SNP	MRC1L1	NM_001009567	human	genbank	54_36p	1	reviewed	missense	c.226	p.G76R	1	"superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	"superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
SLC39A12	221074	broad.mit.edu	36	10	18320236	18320236	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	18320236	18320236	A	G	SNP	SLC39A12	NM_152725	human	genbank	54_36p	1	validated	missense	c.1420	p.K474E	0.36	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
NSUN6	221078	broad.mit.edu	36	10	18977517	18977517	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	18977517	18977517	A	T	SNP	NSUN6	NM_182543	human	genbank	54_36p	-1	validated	missense	c.139	p.S47T	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_PUA domain-like,HMMPfam_PUA,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN"	-	no_errors
ARL5B	221079	broad.mit.edu	36	10	18995521	18995521	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	18995521	18995521	A	G	SNP	ARL5B	NM_178815	human	genbank	54_36p	1	validated	missense	c.58	p.I20V	1	"HMMSmart_SM00178,HMMPfam_Arf,HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00178,HMMPfam_Arf,HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_ARF"	-	no_errors
PLXDC2	84898	broad.mit.edu	36	10	20330856	20330856	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	20330856	20330856	C	A	SNP	PLXDC2	NM_032812	human	genbank	54_36p	1	provisional	missense	c.259	p.P87T	0.69	NULL	"HMMPfam_PSI,HMMSmart_SM00423"	-	no_errors
NEBL	10529	broad.mit.edu	36	10	21141816	21141816	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	21141816	21141816	G	A	SNP	NEBL	NM_006393	human	genbank	54_36p	-1	validated	silent	c.2406	p.D802	1	HMMSmart_SM00227	"HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
NEBL	10529	broad.mit.edu	36	10	21174197	21174197	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	21174197	21174197	C	T	SNP	NEBL	NM_006393	human	genbank	54_36p	-1	validated	missense	c.1223	p.R408K	1	"HMMPfam_Nebulin,HMMSmart_SM00227"	"HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	-	no_errors
C10orf113	387638	broad.mit.edu	36	10	21475310	21475310	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	21475310	21475310	C	G	SNP	C10orf113	NM_001010896	human	genbank	54_36p	-1	predicted	missense	c.104	p.C35S	0	NULL	NULL	-	no_errors
C10orf140	387640	broad.mit.edu	36	10	21844265	21844265	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	21844265	21844265	C	A	SNP	C10orf140	NM_207371	human	genbank	54_36p	-1	validated	missense	c.2493	p.K831N	1	NULL	"superfamily_Putative DNA-binding domain,HMMPfam_Ski_Sno,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
KIAA1217	56243	broad.mit.edu	36	10	24802856	24802856	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	24802856	24802856	G	A	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	missense	c.1540	p.E514K	1	NULL	NULL	-	no_errors
KIAA1217	56243	broad.mit.edu	36	10	24850793	24850793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	24850793	24850793	G	T	SNP	KIAA1217	NM_019590	human	genbank	54_36p	1	validated	missense	c.2385	p.E795D	1	NULL	NULL	-	no_errors
ARHGAP21	57584	broad.mit.edu	36	10	24914375	24914375	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	24914375	24914375	C	T	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.4846	p.D1616N	0.5	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
ARHGAP21	57584	broad.mit.edu	36	10	24924689	24924689	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	24924689	24924689	G	C	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	silent	c.3672	p.S1224	1	"HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP"	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ARHGAP21	57584	broad.mit.edu	36	10	24949169	24949169	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	24949169	24949169	C	G	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	missense	c.1658	p.R553P	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,superfamily_PH domain-like"	-	no_errors
ARHGAP21	57584	broad.mit.edu	36	10	24951666	24951666	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	24951666	24951666	A	T	SNP	ARHGAP21	NM_020824	human	genbank	54_36p	-1	validated	splice_site	c.522+2	e7+2	1	-	-	-	no_errors
PRTFDC1	56952	broad.mit.edu	36	10	25200965	25200965	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	25200965	25200965	C	T	SNP	PRTFDC1	NM_020200	human	genbank	54_36p	-1	provisional	missense	c.373	p.G125R	0.86	"superfamily_PRTase-like,HMMPfam_Pribosyltran"	"superfamily_PRTase-like,HMMPfam_Pribosyltran"	-	no_errors
GPR158	57512	broad.mit.edu	36	10	25927870	25927870	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	25927870	25927870	C	T	SNP	GPR158	NM_020752	human	genbank	54_36p	1	validated	silent	c.3309	p.N1103	0	NULL	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_7tm_3"	-	no_errors
MYO3A	53904	broad.mit.edu	36	10	26326104	26326104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	26326104	26326104	A	T	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.419	p.H140L	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
MYO3A	53904	broad.mit.edu	36	10	26355327	26355327	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	26355327	26355327	T	G	SNP	MYO3A	NM_017433	human	genbank	54_36p	1	reviewed	missense	c.813	p.D271E	1	"HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52540"	-	no_errors
GAD2	2572	broad.mit.edu	36	10	26602626	26602626	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	26602626	26602626	G	T	SNP	GAD2	NM_000818	human	genbank	54_36p	1	reviewed	missense	c.1148	p.G383V	1	"superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC"	"superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC"	-	no_errors
ANKRD26	22852	broad.mit.edu	36	10	27366150	27366150	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	27366150	27366150	C	T	SNP	ANKRD26	NM_014915	human	genbank	54_36p	-1	validated	missense	c.2668	p.E890K	0.11	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
YME1L1	10730	broad.mit.edu	36	10	27465289	27465289	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	27465289	27465289	C	G	SNP	YME1L1	NM_139312	human	genbank	54_36p	-1	reviewed	missense	c.633	p.L211F	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Peptidase_M41"	-	no_errors
PTCHD3	374308	broad.mit.edu	36	10	27742234	27742234	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	27742234	27742234	G	A	SNP	PTCHD3	NM_001034842	human	genbank	54_36p	-1	validated	missense	c.952	p.R318W	0	HMMPfam_Patched	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
MKX	283078	broad.mit.edu	36	10	28063690	28063690	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	28063690	28063690	C	A	SNP	MKX	NM_173576	human	genbank	54_36p	-1	validated	missense	c.539	p.G180V	0.73	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ARMC4	55130	broad.mit.edu	36	10	28189712	28189712	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	28189712	28189712	C	G	SNP	ARMC4	NM_018076	human	genbank	54_36p	-1	validated	missense	c.2869	p.V957L	1	"superfamily_ARM repeat,HMMSmart_SM00185"	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm"	-	no_errors
ARMC4	55130	broad.mit.edu	36	10	28273346	28273346	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	28273346	28273346	C	A	SNP	ARMC4	NM_018076	human	genbank	54_36p	-1	validated	silent	c.1554	p.L518	1	"HMMSmart_SM00185,superfamily_ARM repeat"	"HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat"	-	no_errors
SVIL	6840	broad.mit.edu	36	10	29816115	29816115	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	29816115	29816115	C	T	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.4468	p.V1490I	1	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin"	"superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153"	-	no_errors
SVIL	6840	broad.mit.edu	36	10	29861015	29861015	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	29861015	29861015	G	A	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.1931	p.S644F	1	NULL	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
SVIL	6840	broad.mit.edu	36	10	29862321	29862321	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	29862321	29862321	T	G	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	silent	c.981	p.V327	0	NULL	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
SVIL	6840	broad.mit.edu	36	10	29879989	29879989	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	29879989	29879989	G	C	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.370	p.L124V	0.53	NULL	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
SVIL	6840	broad.mit.edu	36	10	29880010	29880010	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	29880010	29880010	C	A	SNP	SVIL	NM_021738	human	genbank	54_36p	-1	reviewed	missense	c.349	p.A117S	1	NULL	"HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins"	-	no_errors
KIAA1462	57608	broad.mit.edu	36	10	30356945	30356945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	30356945	30356945	G	C	SNP	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	missense	c.2138	p.P713R	0	NULL	NULL	-	no_errors
KIAA1462	57608	broad.mit.edu	36	10	30358209	30358215	+	Frame_Shift_Del	DEL	GCCTCCC	-	GCCTCCC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GCCTCCC	GCCTCCC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	30358209	30358215	GCCTCCC	-	DEL	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	frame_shift_del	c.874_868	p.G290fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	"(deletion:cds_exon[30355038,30358801])"	no_errors
KIAA1462	57608	broad.mit.edu	36	10	30376650	30376650	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	30376650	30376650	G	A	SNP	KIAA1462	NM_020848	human	genbank	54_36p	-1	validated	missense	c.98	p.A33V	0	NULL	NULL	-	no_errors
ZNF438	220929	broad.mit.edu	36	10	31177724	31177724	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	31177724	31177724	A	G	SNP	ZNF438	NM_182755	human	genbank	54_36p	-1	validated	missense	c.1616	p.I539T	0.91	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZEB1	6935	broad.mit.edu	36	10	31849192	31849192	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	31849192	31849192	C	T	SNP	ZEB1	NM_030751	human	genbank	54_36p	1	validated	missense	c.923	p.T308I	0.97	NULL	"PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX"	-	no_errors
ZEB1	6935	broad.mit.edu	36	10	31849766	31849766	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	31849766	31849766	T	C	SNP	ZEB1	NM_030751	human	genbank	54_36p	1	validated	silent	c.1497	p.A499	0.54	NULL	"HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1,superfamily_SSF57667"	-	no_errors
EPC1	80314	broad.mit.edu	36	10	32600731	32600731	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	32600731	32600731	T	G	SNP	EPC1	NM_025209	human	genbank	54_36p	-1	provisional	missense	c.2195	p.H732P	1	HMMPfam_E_Pc_C	"HMMPfam_EPL1,HMMPfam_E_Pc_C"	-	no_errors
EPC1	80314	broad.mit.edu	36	10	32616103	32616103	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	32616103	32616103	G	T	SNP	EPC1	NM_025209	human	genbank	54_36p	-1	provisional	missense	c.1081	p.L361M	1	NULL	"HMMPfam_E_Pc_C,HMMPfam_EPL1"	-	no_errors
EPC1	80314	broad.mit.edu	36	10	32620219	32620219	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	32620219	32620219	C	G	SNP	EPC1	NM_025209	human	genbank	54_36p	-1	provisional	missense	c.853	p.E285Q	1	NULL	"HMMPfam_E_Pc_C,HMMPfam_EPL1"	-	no_errors
ITGB1	3688	broad.mit.edu	36	10	33249239	33249239	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	33249239	33249239	G	A	SNP	ITGB1	NM_033667	human	genbank	54_36p	-1	reviewed	silent	c.1209	p.N403	0.99	"HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF69179"	###############################################################################################################################################################################################################################################################	-	no_errors
CUL2	8453	broad.mit.edu	36	10	35357789	35357789	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	35357789	35357789	T	C	SNP	CUL2	NM_003591	human	genbank	54_36p	-1	provisional	silent	c.1572	p.S524	0.96	"HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182"	"superfamily_Cullin repeat,HMMPfam_Cullin,superfamily_Cullin homology domain,HMMSmart_SM00182,superfamily_Winged helix DNA-binding domain,HMMPfam_Cullin_Nedd8,PatternScan_CULLIN_1"	-	no_errors
CUL2	8453	broad.mit.edu	36	10	35389826	35389826	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	35389826	35389826	T	C	SNP	CUL2	NM_003591	human	genbank	54_36p	-1	provisional	missense	c.299	p.Y100C	1	"HMMPfam_Cullin,superfamily_Cullin repeat"	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_Winged helix DNA-binding domain"	-	no_errors
ANKRD30A	91074	broad.mit.edu	36	10	37470852	37470852	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	37470852	37470852	T	A	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.853	p.C285S	0	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,PatternScan_ASP_PROTEASE"	-	no_errors
ANKRD30A	91074	broad.mit.edu	36	10	37470979	37470979	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	37470979	37470979	T	A	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.980	p.I327N	0	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD30A	91074	broad.mit.edu	36	10	37470980	37470980	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	37470980	37470980	C	T	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	silent	c.981	p.I327	0	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD30A	91074	broad.mit.edu	36	10	37491772	37491772	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	37491772	37491772	A	T	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	silent	c.1824	p.T608	0.01	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD30A	91074	broad.mit.edu	36	10	37548593	37548593	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	37548593	37548593	A	C	SNP	ANKRD30A	NM_052997	human	genbank	54_36p	1	validated	missense	c.3779	p.Q1260P	0.41	NULL	"PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ZNF248	57209	broad.mit.edu	36	10	38160907	38160907	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	38160907	38160907	T	C	SNP	ZNF248	NM_021045	human	genbank	54_36p	-1	provisional	missense	c.1382	p.E461G	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF25	219749	broad.mit.edu	36	10	38281644	38281644	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	38281644	38281644	C	G	SNP	ZNF25	NM_145011	human	genbank	54_36p	-1	provisional	missense	c.788	p.C263S	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	-	no_errors
ZNF33A	7581	broad.mit.edu	36	10	38384567	38384567	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	38384567	38384567	G	C	SNP	ZNF33A	NM_006954	human	genbank	54_36p	1	validated	silent	c.1509	p.G503	0.72	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
RET	5979	broad.mit.edu	36	10	42926708	42926708	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	42926708	42926708	C	T	SNP	RET	NM_020975	human	genbank	54_36p	1	reviewed	silent	c.1311	p.N437	0	NULL	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
RET	5979	broad.mit.edu	36	10	42929961	42929961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	42929961	42929961	C	T	SNP	RET	NM_020975	human	genbank	54_36p	1	reviewed	missense	c.1907	p.T636M	1	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,superfamily_Cadherin,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
RET	5979	broad.mit.edu	36	10	42939221	42939221	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	10	42939221	42939221	C	T	SNP	RET	NM_020975	human	genbank	54_36p	1	reviewed	silent	c.2898	p.T966	0.95	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like"	"HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,superfamily_Cadherin,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
CSGALNACT2	55454	broad.mit.edu	36	10	42982544	42982544	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	42982544	42982544	C	A	SNP	CSGALNACT2	NM_018590	human	genbank	54_36p	1	provisional	missense	c.1246	p.Q416K	1	"HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases"	"HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases"	-	no_errors
RASGEF1A	221002	broad.mit.edu	36	10	43016152	43016152	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	43016152	43016152	A	G	SNP	RASGEF1A	NM_145313	human	genbank	54_36p	-1	validated	missense	c.650	p.V217A	0.94	"superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF"	"HMMSmart_SM00229,superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF"	-	no_errors
ZNF485	220992	broad.mit.edu	36	10	43424101	43424101	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	43424101	43424101	T	G	SNP	ZNF485	ENST00000374435	human	ensembl	54_36p	1	known	missense	c.58	p.F20V	0.23	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FAM21C	253725	broad.mit.edu	36	10	45592816	45592816	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	45592816	45592816	G	C	SNP	FAM21C	NM_015262	human	genbank	54_36p	1	validated	missense	c.2226	p.K742N	0.97	NULL	NULL	-	no_errors
PPYR1	5540	broad.mit.edu	36	10	46507280	46507280	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	46507280	46507280	G	A	SNP	PPYR1	NM_005972	human	genbank	54_36p	1	validated	nonsense	c.491	p.W164*	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZNF488	118738	broad.mit.edu	36	10	47991539	47991539	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	47991539	47991539	G	A	SNP	ZNF488	NM_153034	human	genbank	54_36p	1	provisional	missense	c.1001	p.R334Q	1	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
FRMPD2	143162	broad.mit.edu	36	10	49051061	49051061	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	49051061	49051061	G	T	SNP	FRMPD2	NM_001018071	human	genbank	54_36p	-1	reviewed	missense	c.3157	p.R1053S	0	NULL	"HMMSmart_SM00750,superfamily_Ubiquitin-like,HMMSmart_SM00295,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
FRMPD2	143162	broad.mit.edu	36	10	49062833	49062833	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	49062833	49062833	C	T	SNP	FRMPD2	NM_001018071	human	genbank	54_36p	-1	reviewed	silent	c.2457	p.T819	0.32	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00750,HMMPfam_FERM_N,HMMPfam_FERM_C,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like"	-	no_errors
MAPK8	5599	broad.mit.edu	36	10	49298345	49298345	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	49298345	49298345	C	T	SNP	MAPK8	NM_139047	human	genbank	54_36p	1	reviewed	missense	c.592	p.L198F	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ARHGAP22	58504	broad.mit.edu	36	10	49324538	49324538	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	49324538	49324538	C	G	SNP	ARHGAP22	NM_021226	human	genbank	54_36p	-1	validated	missense	c.1999	p.E667Q	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
LRRC18	474354	broad.mit.edu	36	10	49791871	49791871	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	49791871	49791871	C	T	SNP	LRRC18	NM_001006939	human	genbank	54_36p	-1	validated	silent	c.336	p.G112	0.28	"superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1"	"superfamily_Outer arm dynein light chain 1,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
LRRC18	474354	broad.mit.edu	36	10	49792137	49792137	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	49792137	49792137	T	A	SNP	LRRC18	NM_001006939	human	genbank	54_36p	-1	validated	missense	c.70	p.I24F	0.01	NULL	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Outer arm dynein light chain 1"	-	no_errors
C10orf71	118461	broad.mit.edu	36	10	50200965	50200965	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	50200965	50200965	G	A	SNP	C10orf71	NM_199459	human	genbank	54_36p	1	validated	silent	c.369	p.Q123	1	NULL	NULL	-	no_errors
C10orf71	118461	broad.mit.edu	36	10	50201419	50201419	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	50201419	50201419	A	C	SNP	C10orf71	NM_199459	human	genbank	54_36p	1	validated	missense	c.823	p.S275R	1	NULL	NULL	-	no_errors
ERCC6	2074	broad.mit.edu	36	10	50408893	50408893	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	50408893	50408893	C	A	SNP	ERCC6	NM_000124	human	genbank	54_36p	-1	reviewed	splice_site	c.423-1	e2-1	1	-	-	-	no_errors
SLC18A3	6572	broad.mit.edu	36	10	50490335	50490335	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	50490335	50490335	C	G	SNP	SLC18A3	NM_003055	human	genbank	54_36p	1	reviewed	missense	c.1543	p.P515A	0.16	NULL	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
OGDHL	55753	broad.mit.edu	36	10	50623880	50623880	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	50623880	50623880	G	A	SNP	OGDHL	NM_018245	human	genbank	54_36p	-1	validated	silent	c.1446	p.N482	1	"superfamily_SSF52518,HMMPfam_E1_dh"	"superfamily_SSF52518,HMMPfam_E1_dh,HMMPfam_Transket_pyr"	-	no_errors
AGAP8	728404	broad.mit.edu	36	10	50895039	50895039	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	50895039	50895039	A	T	SNP	AGAP8	NM_001077686	human	genbank	54_36p	-1	provisional	missense	c.1949	p.I650N	1	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
AGAP8	728404	broad.mit.edu	36	10	50895056	50895056	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	50895056	50895056	G	T	SNP	AGAP8	NM_001077686	human	genbank	54_36p	-1	provisional	silent	c.1932	p.A644	0.96	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SSF50729"	-	no_errors
FAM21A	387680	broad.mit.edu	36	10	51559210	51559210	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	51559210	51559210	G	A	SNP	FAM21A	NM_001005751	human	genbank	54_36p	1	validated	missense	c.3113	p.R1038H	1	NULL	NULL	-	no_errors
SGMS1	259230	broad.mit.edu	36	10	51741170	51741170	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	51741170	51741170	G	A	SNP	SGMS1	NM_147156	human	genbank	54_36p	-1	reviewed	silent	c.753	p.D251	1	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_1"	-	no_errors
A1CF	29974	broad.mit.edu	36	10	52258002	52258002	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	52258002	52258002	C	G	SNP	A1CF	NM_138932	human	genbank	54_36p	-1	reviewed	missense	c.664	p.V222L	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_dsRNA-binding domain-like"	-	no_errors
CSTF2T	23283	broad.mit.edu	36	10	53128896	53128896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	53128896	53128896	C	T	SNP	CSTF2T	NM_015235	human	genbank	54_36p	-1	validated	missense	c.420	p.M140I	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
PRKG1	5592	broad.mit.edu	36	10	53492301	53492301	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	53492301	53492301	A	T	SNP	PRKG1	NM_006258	human	genbank	54_36p	1	validated	splice_site	c.841-2	e7-2	0.99	-	-	-	no_errors
PCDH15	65217	broad.mit.edu	36	10	55236635	55236635	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	55236635	55236635	G	C	SNP	PCDH15	ENST00000373965	human	ensembl	54_36p	-1	known	missense	c.4765	p.H1589D	0.99	NULL	"HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin"	-	no_errors
PCDH15	65217	broad.mit.edu	36	10	55238468	55238468	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	55238468	55238468	G	C	SNP	PCDH15	ENST00000395445	human	ensembl	54_36p	-1	known	missense	c.5348	p.T1783R	0.9	NULL	"HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin"	-	no_errors
PCDH15	65217	broad.mit.edu	36	10	55252095	55252095	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	55252095	55252095	G	A	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	silent	c.5397	p.S1799	0	NULL	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin"	-	no_errors
PCDH15	65217	broad.mit.edu	36	10	55625533	55625533	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	55625533	55625533	A	G	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	silent	c.1221	p.S407	1	"HMMPfam_Cadherin,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
PCDH15	65217	broad.mit.edu	36	10	55747164	55747164	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	55747164	55747164	G	T	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	missense	c.749	p.T250N	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
FAM13C	220965	broad.mit.edu	36	10	60753766	60753766	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	60753766	60753766	C	T	SNP	FAM13C	NM_198215	human	genbank	54_36p	-1	validated	missense	c.431	p.R144Q	0.74	NULL	NULL	-	no_errors
CCDC6	8030	broad.mit.edu	36	10	61222782	61222782	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	61222782	61222782	G	A	SNP	CCDC6	NM_005436	human	genbank	54_36p	-1	validated	missense	c.1324	p.P442S	1	NULL	HMMPfam_DUF2046	-	no_errors
CCDC6	8030	broad.mit.edu	36	10	61244426	61244426	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	61244426	61244426	C	A	SNP	CCDC6	NM_005436	human	genbank	54_36p	-1	validated	missense	c.676	p.A226S	1	HMMPfam_DUF2046	HMMPfam_DUF2046	-	no_errors
CCDC6	8030	broad.mit.edu	36	10	61244452	61244452	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	10	61244452	61244452	A	G	SNP	CCDC6	NM_005436	human	genbank	54_36p	-1	validated	missense	c.650	p.L217P	1	HMMPfam_DUF2046	HMMPfam_DUF2046	-	no_errors
ANK3	288	broad.mit.edu	36	10	61499391	61499391	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	61499391	61499391	A	T	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.11254	p.C3752S	1	NULL	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
ANK3	288	broad.mit.edu	36	10	61503331	61503331	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	61503331	61503331	C	G	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.7314	p.L2438F	1	NULL	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like"	-	no_errors
ANK3	288	broad.mit.edu	36	10	61504064	61504064	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	61504064	61504064	G	C	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	missense	c.6581	p.P2194R	0.99	NULL	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like"	-	no_errors
ANK3	288	broad.mit.edu	36	10	61637875	61637875	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	61637875	61637875	C	T	SNP	ANK3	NM_020987	human	genbank	54_36p	-1	reviewed	silent	c.1119	p.V373	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMSmart_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like"	-	no_errors
CDK1	983	broad.mit.edu	36	10	62215450	62215450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	10	62215450	62215450	G	C	SNP	CDC2	NM_001786	human	genbank	54_36p	1	reviewed	missense	c.217	p.D73H	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ARID5B	84159	broad.mit.edu	36	10	63520721	63520721	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	63520721	63520721	A	T	SNP	ARID5B	NM_032199	human	genbank	54_36p	1	validated	missense	c.1493	p.E498V	0.94	NULL	"superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501"	-	no_errors
ZNF365	22891	broad.mit.edu	36	10	63806262	63806262	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	63806262	63806262	T	C	SNP	ZNF365	NM_199451	human	genbank	54_36p	1	validated	missense	c.304	p.Y102H	0.53	NULL	HMMSmart_ZnF_C2H2	-	no_errors
ZNF365	22891	broad.mit.edu	36	10	63806538	63806538	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	63806538	63806538	C	A	SNP	ZNF365	NM_199451	human	genbank	54_36p	1	validated	missense	c.580	p.L194M	1	NULL	HMMSmart_ZnF_C2H2	-	no_errors
EGR2	1959	broad.mit.edu	36	10	64243747	64243747	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	64243747	64243747	G	C	SNP	EGR2	NM_000399	human	genbank	54_36p	-1	reviewed	silent	c.657	p.L219	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
JMJD1C	221037	broad.mit.edu	36	10	64606169	64606169	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	64606169	64606169	T	C	SNP	JMJD1C	NM_032776	human	genbank	54_36p	-1	validated	missense	c.7295	p.N2432S	1	"HMMSmart_SM00558,superfamily_Clavaminate synthase-like,HMMPfam_JmjC"	"HMMSmart_SM00558,superfamily_Clavaminate synthase-like,HMMPfam_JmjC"	-	no_errors
JMJD1C	221037	broad.mit.edu	36	10	64614412	64614412	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	64614412	64614412	A	T	SNP	JMJD1C	NM_032776	human	genbank	54_36p	-1	validated	missense	c.6923	p.V2308E	1	HMMSmart_SM00558	"HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like"	-	no_errors
JMJD1C	221037	broad.mit.edu	36	10	64620677	64620677	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	64620677	64620677	A	G	SNP	JMJD1C	NM_032776	human	genbank	54_36p	-1	validated	missense	c.6274	p.Y2092H	1	NULL	"HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like"	-	no_errors
JMJD1C	221037	broad.mit.edu	36	10	64630241	64630241	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	64630241	64630241	C	A	SNP	JMJD1C	NM_032776	human	genbank	54_36p	-1	validated	splice_site	c.5276+1	e11+1	1	-	-	-	no_errors
JMJD1C	221037	broad.mit.edu	36	10	64645087	64645087	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	64645087	64645087	G	A	SNP	JMJD1C	NM_032776	human	genbank	54_36p	-1	validated	silent	c.957	p.S319	1	NULL	"HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like"	-	no_errors
CTNNA3	29119	broad.mit.edu	36	10	68610239	68610239	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	68610239	68610239	G	A	SNP	CTNNA3	NM_013266	human	genbank	54_36p	-1	validated	nonsense	c.889	p.R297*	1	HMMPfam_Vinculin	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin"	-	no_errors
HERC4	26091	broad.mit.edu	36	10	69362505	69362505	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	69362505	69362505	T	C	SNP	HERC4	NM_022079	human	genbank	54_36p	-1	validated	missense	c.2717	p.N906S	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
MYPN	84665	broad.mit.edu	36	10	69625251	69625251	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	69625251	69625251	T	G	SNP	MYPN	NM_032578	human	genbank	54_36p	1	validated	missense	c.3114	p.S1038R	0.99	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET"	-	no_errors
PBLD	64081	broad.mit.edu	36	10	69721950	69721950	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	69721950	69721950	G	T	SNP	PBLD	NM_022129	human	genbank	54_36p	-1	validated	missense	c.335	p.A112D	1	"superfamily_SSF54506,HMMPfam_PhzC-PhzF"	"superfamily_SSF54506,HMMPfam_PhzC-PhzF"	-	no_errors
HNRNPH3	3189	broad.mit.edu	36	10	69771816	69771816	+	Nonstop_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	69771816	69771816	G	C	SNP	HNRNPH3	NM_012207	human	genbank	54_36p	1	reviewed	nonstop	c.1040	p.*347S	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
RUFY2	55680	broad.mit.edu	36	10	69775776	69775776	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	69775776	69775776	C	G	SNP	RUFY2	NM_017987	human	genbank	54_36p	-1	validated	missense	c.1776	p.K592N	0.99	"HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF"	"HMMPfam_RUN,HMMSmart_RUN,HMMSmart_FYVE,HMMPfam_FYVE,superfamily_FYVE_PHD_ZnF"	-	no_errors
DNA2	1763	broad.mit.edu	36	10	69846615	69846615	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	69846615	69846615	C	A	SNP	DNA2	NM_001080449	human	genbank	54_36p	-1	provisional	missense	c.3229	p.G1077C	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNA2	1763	broad.mit.edu	36	10	69888979	69888979	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	69888979	69888979	G	C	SNP	DNA2	NM_001080449	human	genbank	54_36p	-1	provisional	missense	c.865	p.Q289E	1	HMMPfam_Dna2	"HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNA2	1763	broad.mit.edu	36	10	69895464	69895464	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	69895464	69895464	G	C	SNP	DNA2	NM_001080449	human	genbank	54_36p	-1	provisional	missense	c.811	p.Q271E	0.07	HMMPfam_Dna2	"HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TET1	80312	broad.mit.edu	36	10	70121233	70121233	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	70121233	70121233	G	A	SNP	TET1	NM_030625	human	genbank	54_36p	1	validated	missense	c.6067	p.A2023T	1	NULL	HMMPfam_zf-CXXC	-	no_errors
CCAR1	55749	broad.mit.edu	36	10	70172224	70172224	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	70172224	70172224	C	G	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.410	p.S137C	1	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand"	-	no_errors
CCAR1	55749	broad.mit.edu	36	10	70185224	70185224	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	70185224	70185224	C	A	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.1550	p.P517H	1	NULL	"HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand,superfamily_SAP domain"	-	no_errors
CCAR1	55749	broad.mit.edu	36	10	70217784	70217784	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	70217784	70217784	C	T	SNP	CCAR1	NM_018237	human	genbank	54_36p	1	validated	missense	c.2975	p.S992F	0.85	NULL	"HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand,superfamily_SAP domain"	-	no_errors
SUPV3L1	6832	broad.mit.edu	36	10	70621417	70621417	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	70621417	70621417	G	T	SNP	SUPV3L1	NM_003171	human	genbank	54_36p	1	provisional	missense	c.742	p.G248C	1	superfamily_SSF52540	"superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
HKDC1	80201	broad.mit.edu	36	10	70678237	70678247	+	Frame_Shift_Del	DEL	TGTCCGCTTCC	-	TGTCCGCTTCC	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	TGTCCGCTTCC	TGTCCGCTTCC	-	-	TGTCCGCTTCC	TGTCCGCTTCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	70678237	70678247	TGTCCGCTTCC	-	DEL	HKDC1	NM_025130	human	genbank	54_36p	1	validated	frame_shift_del	c.1317_1327	p.V440fs	0.944:1.000:1.000:0.993:0.998:0.996:0.903:0.999:1.000:0.999:1.000	"HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain"	"HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES"	"(deletion:cds_exon[70678186,70678490])"	no_errors
HKDC1	80201	broad.mit.edu	36	10	70695406	70695406	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	70695406	70695406	C	G	SNP	HKDC1	NM_025130	human	genbank	54_36p	1	validated	missense	c.2432	p.T811R	0.99	"HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain"	"HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES"	-	no_errors
HK1	3098	broad.mit.edu	36	10	70789679	70789679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	70789679	70789679	C	G	SNP	HK1	NM_033497	human	genbank	54_36p	1	reviewed	missense	c.259	p.L87V	1	"superfamily_SSF53067,HMMPfam_Hexokinase_1"	"superfamily_SSF53067,HMMPfam_Hexokinase_1,PatternScan_HEXOKINASES,HMMPfam_Hexokinase_2"	-	no_errors
TACR2	6865	broad.mit.edu	36	10	70836952	70836952	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	70836952	70836952	C	A	SNP	TACR2	NM_001057	human	genbank	54_36p	-1	validated	missense	c.832	p.D278Y	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TACR2	6865	broad.mit.edu	36	10	70846081	70846081	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	70846081	70846081	C	G	SNP	TACR2	NM_001057	human	genbank	54_36p	-1	validated	missense	c.5	p.G2A	0.88	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
PRF1	5551	broad.mit.edu	36	10	72027815	72027815	+	Nonstop_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	72027815	72027815	T	A	SNP	PRF1	NM_001083116	human	genbank	54_36p	-1	reviewed	nonstop	c.1668	p.*556C	0.35	NULL	"HMMPfam_MACPF,HMMSmart_SM00457,PatternScan_MAC_PERFORIN,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
ADAMTS14	140766	broad.mit.edu	36	10	72138484	72138484	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	72138484	72138484	G	C	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.814	p.V272L	1	"superfamily_SSF55486,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS14	140766	broad.mit.edu	36	10	72170895	72170895	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	72170895	72170895	A	T	SNP	ADAMTS14	NM_139155	human	genbank	54_36p	1	reviewed	missense	c.1904	p.H635L	1	NULL	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_SSF55486"	-	no_errors
UNC5B	219699	broad.mit.edu	36	10	72716536	72716536	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	72716536	72716536	C	T	SNP	UNC5B	NM_170744	human	genbank	54_36p	1	validated	missense	c.637	p.R213C	1	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	-	no_errors
UNC5B	219699	broad.mit.edu	36	10	72717487	72717487	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	72717487	72717487	G	A	SNP	UNC5B	NM_170744	human	genbank	54_36p	1	validated	missense	c.860	p.G287D	1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	"HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
CDH23	64072	broad.mit.edu	36	10	73134685	73134685	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	73134685	73134685	C	T	SNP	CDH23	NM_022124	human	genbank	54_36p	1	reviewed	silent	c.2745	p.I915	0.98	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
CDH23	64072	broad.mit.edu	36	10	73228218	73228218	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	73228218	73228218	C	T	SNP	CDH23	NM_022124	human	genbank	54_36p	1	reviewed	missense	c.6931	p.P2311S	0.99	"HMMPfam_Cadherin,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
CDH23	64072	broad.mit.edu	36	10	73232838	73232838	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	73232838	73232838	G	T	SNP	CDH23	NM_022124	human	genbank	54_36p	1	reviewed	nonsense	c.7660	p.E2554*	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
SPOCK2	9806	broad.mit.edu	36	10	73496817	73496817	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	73496817	73496817	G	A	SNP	SPOCK2	NM_014767	human	genbank	54_36p	-1	validated	silent	c.777	p.T259	1	"HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473"	"superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2,HMMPfam_SPARC_Ca_bdg,superfamily_SSF47473,superfamily_Thyroglobulin_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY"	-	no_errors
CBARA1	10367	broad.mit.edu	36	10	73805581	73805581	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	73805581	73805581	C	G	SNP	CBARA1	NM_006077	human	genbank	54_36p	-1	validated	silent	c.1242	p.V414	1	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand"	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
OIT3	170392	broad.mit.edu	36	10	74354372	74354372	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	74354372	74354372	T	A	SNP	OIT3	NM_152635	human	genbank	54_36p	1	provisional	missense	c.1331	p.I444N	0.98	"HMMPfam_Zona_pellucida,HMMSmart_SM00241"	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241"	-	no_errors
PLA2G12B	84647	broad.mit.edu	36	10	74371087	74371087	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	74371087	74371087	G	A	SNP	PLA2G12B	NM_032562	human	genbank	54_36p	-1	validated	silent	c.312	p.G104	1	"HMMPfam_PLA2G12,superfamily_PhospholipaseA2"	"PatternScan_PA2_HIS,PatternScan_PA2_ASP,HMMPfam_PLA2G12,superfamily_PhospholipaseA2,PatternScan_ER_TARGET"	-	no_errors
PLA2G12B	84647	broad.mit.edu	36	10	74372423	74372423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	74372423	74372423	G	A	SNP	PLA2G12B	NM_032562	human	genbank	54_36p	-1	validated	missense	c.293	p.P98L	1	"HMMPfam_PLA2G12,superfamily_PhospholipaseA2"	"PatternScan_ER_TARGET,HMMPfam_PLA2G12,PatternScan_PA2_HIS,PatternScan_PA2_ASP,superfamily_PhospholipaseA2"	-	no_errors
ANXA7	310	broad.mit.edu	36	10	74826311	74826311	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	74826311	74826311	G	C	SNP	ANXA7	NM_004034	human	genbank	54_36p	-1	reviewed	missense	c.407	p.P136R	1	NULL	"superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_SM00335"	-	no_errors
MYOZ1	58529	broad.mit.edu	36	10	75063684	75063684	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75063684	75063684	G	T	SNP	MYOZ1	NM_021245	human	genbank	54_36p	-1	provisional	silent	c.648	p.P216	0.94	HMMPfam_Calsarcin	HMMPfam_Calsarcin	-	no_errors
SYNPO2L	79933	broad.mit.edu	36	10	75077114	75077114	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75077114	75077114	G	C	SNP	SYNPO2L	NM_024875	human	genbank	54_36p	-1	validated	missense	c.1630	p.R544G	1	NULL	NULL	-	no_errors
KIAA0913	23053	broad.mit.edu	36	10	75223938	75223938	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	75223938	75223938	G	A	SNP	KIAA0913	NM_015037	human	genbank	54_36p	1	validated	missense	c.2653	p.V885M	1	NULL	HMMPfam_SWIM	-	no_errors
KIAA0913	23053	broad.mit.edu	36	10	75226634	75226634	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75226634	75226634	A	T	SNP	KIAA0913	NM_015037	human	genbank	54_36p	1	validated	missense	c.3130	p.R1044W	1	NULL	HMMPfam_SWIM	-	no_errors
KIAA0913	23053	broad.mit.edu	36	10	75227155	75227155	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75227155	75227155	G	C	SNP	KIAA0913	NM_015037	human	genbank	54_36p	1	validated	missense	c.3448	p.D1150H	1	NULL	HMMPfam_SWIM	-	no_errors
KIAA0913	23053	broad.mit.edu	36	10	75230191	75230191	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75230191	75230191	G	A	SNP	KIAA0913	NM_015037	human	genbank	54_36p	1	validated	missense	c.4981	p.V1661I	1	NULL	HMMPfam_SWIM	-	no_errors
NDST2	8509	broad.mit.edu	36	10	75236222	75236222	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	75236222	75236222	G	A	SNP	NDST2	NM_003635	human	genbank	54_36p	-1	reviewed	missense	c.1265	p.T422M	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
PLAU	5328	broad.mit.edu	36	10	75342766	75342766	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75342766	75342766	G	T	SNP	PLAU	NM_002658	human	genbank	54_36p	1	reviewed	missense	c.272	p.C91F	0.99	"superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle"	"superfamily_Kringle-like,PatternScan_EGF_1,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
PLAU	5328	broad.mit.edu	36	10	75343489	75343489	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75343489	75343489	C	G	SNP	PLAU	NM_002658	human	genbank	54_36p	1	reviewed	missense	c.647	p.P216R	1	"HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases"	"HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_EGF_1,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
VCL	7414	broad.mit.edu	36	10	75527093	75527093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75527093	75527093	A	T	SNP	VCL	NM_014000	human	genbank	54_36p	1	reviewed	missense	c.1869	p.E623D	1	"HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin"	"superfamily_alpha-catenin/vinculin,HMMPfam_Vinculin,PatternScan_VINCULIN_1,PatternScan_VINCULIN_2"	-	no_errors
ADK	132	broad.mit.edu	36	10	75654357	75654357	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	75654357	75654357	T	G	SNP	ADK	NM_006721	human	genbank	54_36p	1	reviewed	splice_site	c.194+2	e3+2	1	-	-	-	no_errors
MYST4	23522	broad.mit.edu	36	10	76454930	76454930	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	76454930	76454930	A	T	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	missense	c.3581	p.Q1194L	0.37	NULL	"HMMSmart_SM00526,superfamily_Winged helix DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
MYST4	23522	broad.mit.edu	36	10	76460652	76460652	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	76460652	76460652	C	T	SNP	MYST4	NM_012330	human	genbank	54_36p	1	validated	nonsense	c.6064	p.Q2022*	1	NULL	"HMMSmart_SM00249,HMMPfam_MOZ_SAS,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,superfamily_Acyl-CoA N-acyltransferases (Nat),PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Winged helix DNA-binding domain"	-	no_errors
DUPD1	338599	broad.mit.edu	36	10	76473583	76473583	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	76473583	76473583	G	A	SNP	DUPD1	NM_001003892	human	genbank	54_36p	-1	provisional	silent	c.399	p.D133	0.01	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
VDAC2	7417	broad.mit.edu	36	10	76643806	76643806	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	76643806	76643806	A	G	SNP	VDAC2	NM_003375	human	genbank	54_36p	1	provisional	missense	c.122	p.D41G	1	HMMPfam_Porin_3	"HMMPfam_Porin_3,PatternScan_EUKARYOTIC_PORIN"	-	no_errors
ZNF503	84858	broad.mit.edu	36	10	76828582	76828582	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	76828582	76828582	T	G	SNP	ZNF503	NM_032772	human	genbank	54_36p	-1	validated	silent	c.1872	p.G624	1	NULL	NULL	-	no_errors
DLG5	9231	broad.mit.edu	36	10	79239434	79239434	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	79239434	79239434	G	T	SNP	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	silent	c.4524	p.S1508	1	"superfamily_PDZ domain-like,HMMPfam_PDZ"	###############################################################################################################################################################################################################################################################	-	no_errors
DLG5	9231	broad.mit.edu	36	10	79265505	79265505	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	79265505	79265505	A	C	SNP	DLG5	NM_004747	human	genbank	54_36p	-1	reviewed	missense	c.1619	p.I540S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
RPS24	6229	broad.mit.edu	36	10	79465318	79465318	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	79465318	79465318	C	G	SNP	RPS24	NM_001026	human	genbank	54_36p	1	reviewed	missense	c.113	p.T38R	1	HMMPfam_Ribosomal_S24e	"HMMPfam_Ribosomal_S24e,PatternScan_RIBOSOMAL_S24E"	-	no_errors
ZMIZ1	57178	broad.mit.edu	36	10	80722051	80722051	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	80722051	80722051	G	A	SNP	ZMIZ1	NM_020338	human	genbank	54_36p	1	validated	missense	c.889	p.A297T	1	NULL	"superfamily_RING/U-box,HMMPfam_zf-MIZ"	-	no_errors
PLAC9	219348	broad.mit.edu	36	10	81893998	81893998	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	81893998	81893998	A	G	SNP	PLAC9	NM_001012973	human	genbank	54_36p	1	provisional	missense	c.202	p.K68E	0.66	NULL	NULL	-	no_errors
TSPAN14	81619	broad.mit.edu	36	10	82259120	82259120	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	82259120	82259120	C	T	SNP	TSPAN14	NM_030927	human	genbank	54_36p	1	validated	silent	c.363	p.D121	1	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
NRG3	10718	broad.mit.edu	36	10	83625517	83625517	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	83625517	83625517	C	A	SNP	NRG3	NM_001010848	human	genbank	54_36p	1	validated	silent	c.441	p.S147	0.99	NULL	"superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Neuregulin"	-	no_errors
LRIT2	340745	broad.mit.edu	36	10	85971779	85971779	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	85971779	85971779	G	A	SNP	LRIT2	NM_001017924	human	genbank	54_36p	-1	validated	silent	c.1530	p.T510	0	NULL	"HMMPfam_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
LRIT2	340745	broad.mit.edu	36	10	85972046	85972047	+	Frame_Shift_Ins	INS	-	CC	-	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	85972046	85972047	-	CC	INS	LRIT2	NM_001017924	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1263_1262	p.D421fs	0.804:0.842	NULL	"HMMPfam_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
LRIT2	340745	broad.mit.edu	36	10	85975220	85975220	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	85975220	85975220	C	T	SNP	LRIT2	NM_001017924	human	genbank	54_36p	-1	validated	missense	c.37	p.V13I	0	NULL	"HMMPfam_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058"	-	no_errors
RGR	5995	broad.mit.edu	36	10	85998718	85998718	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	85998718	85998718	G	A	SNP	RGR	ENST00000372092	human	ensembl	54_36p	1	known	missense	c.259	p.V87I	0.32	NULL	NULL	-	no_errors
FAM190B	54462	broad.mit.edu	36	10	86121396	86121396	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	86121396	86121396	T	C	SNP	KIAA1128	NM_018999	human	genbank	54_36p	1	validated	missense	c.608	p.L203S	1	NULL	NULL	-	no_errors
FAM190B	54462	broad.mit.edu	36	10	86121660	86121660	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	86121660	86121660	A	G	SNP	KIAA1128	NM_018999	human	genbank	54_36p	1	validated	missense	c.872	p.N291S	0.64	NULL	NULL	-	no_errors
GRID1	2894	broad.mit.edu	36	10	87665922	87665922	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	87665922	87665922	C	T	SNP	GRID1	NM_017551	human	genbank	54_36p	-1	reviewed	splice_site	c.780+1	e5+1	1	-	-	-	no_errors
WAPAL	23063	broad.mit.edu	36	10	88187336	88187336	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	88187336	88187336	C	G	SNP	WAPAL	NM_015045	human	genbank	54_36p	-1	validated	missense	c.3517	p.G1173R	1	NULL	"superfamily_ARM repeat,HMMPfam_WAPL"	-	no_errors
WAPAL	23063	broad.mit.edu	36	10	88249462	88249462	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	88249462	88249462	G	T	SNP	WAPAL	NM_015045	human	genbank	54_36p	-1	validated	missense	c.1518	p.N506K	1	NULL	"HMMPfam_WAPL,superfamily_ARM repeat"	-	no_errors
OPN4	94233	broad.mit.edu	36	10	88408398	88408398	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	88408398	88408398	G	A	SNP	OPN4	NM_001030015	human	genbank	54_36p	1	validated	nonsense	c.635	p.W212*	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN"	-	no_errors
OPN4	94233	broad.mit.edu	36	10	88409632	88409632	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	88409632	88409632	G	A	SNP	OPN4	NM_001030015	human	genbank	54_36p	1	validated	silent	c.834	p.R278	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN,superfamily_SSF81321"	-	no_errors
OPN4	94233	broad.mit.edu	36	10	88409710	88409710	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	88409710	88409710	G	C	SNP	OPN4	NM_001030015	human	genbank	54_36p	1	validated	missense	c.912	p.K304N	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN,superfamily_SSF81321"	-	no_errors
LDB3	11155	broad.mit.edu	36	10	88431336	88431336	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	88431336	88431336	G	C	SNP	LDB3	NM_007078	human	genbank	54_36p	1	reviewed	missense	c.485	p.G162A	0.05	NULL	"HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228,HMMSmart_SM00735,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,HMMPfam_LIM,PatternScan_LIM_DOMAIN_1"	-	no_errors
LDB3	11155	broad.mit.edu	36	10	88449030	88449030	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	88449030	88449030	G	T	SNP	LDB3	NM_001080115	human	genbank	54_36p	1	reviewed	silent	c.912	p.T304	1	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_ZM"	-	no_errors
LDB3	11155	broad.mit.edu	36	10	88466430	88466430	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	88466430	88466430	G	A	SNP	LDB3	NM_007078	human	genbank	54_36p	1	reviewed	missense	c.1598	p.R533K	1	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMSmart_SM00735,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
BMPR1A	657	broad.mit.edu	36	10	88641943	88641943	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	88641943	88641943	G	A	SNP	BMPR1A	NM_004329	human	genbank	54_36p	1	reviewed	missense	c.310	p.E104K	1	"superfamily_SSF57302,HMMPfam_Activin_recp"	"superfamily_SSF57302,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
AGAP11	119385	broad.mit.edu	36	10	88759447	88759447	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	88759447	88759447	A	T	SNP	AGAP11	NM_133447	human	genbank	54_36p	1	validated	silent	c.1458	p.G486	0.98	superfamily_ANK	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
FAM35A	54537	broad.mit.edu	36	10	88901636	88901636	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	88901636	88901636	G	C	SNP	FAM35A	NM_019054	human	genbank	54_36p	1	validated	missense	c.545	p.C182S	0	NULL	NULL	-	no_errors
PAPSS2	9060	broad.mit.edu	36	10	89493176	89493176	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	89493176	89493176	C	G	SNP	PAPSS2	NM_001015880	human	genbank	54_36p	1	reviewed	missense	c.1289	p.T430S	1	"HMMPfam_ATP-sulfurylase,superfamily_SSF52374"	"superfamily_SSF52540,HMMPfam_APS_kinase,superfamily_PUA-like,HMMPfam_ATP-sulfurylase,superfamily_SSF52374"	-	no_errors
ATAD1	84896	broad.mit.edu	36	10	89504434	89504434	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	89504434	89504434	C	A	SNP	ATAD1	NM_032810	human	genbank	54_36p	-1	provisional	missense	c.1076	p.C359F	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
PTEN	5728	broad.mit.edu	36	10	89707652	89707652	+	Frame_Shift_Del	DEL	C	-	-	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	89707652	89707652	C	-	DEL	PTEN	NM_000314	human	genbank	54_36p	1	reviewed	frame_shift_del	c.697	p.R233fs	1	"HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"(deletion:cds_exon[89707590,89707756])"	no_errors
LIPK	643414	broad.mit.edu	36	10	90502302	90502302	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	90502302	90502302	A	G	SNP	LIPK	NM_001080518	human	genbank	54_36p	1	provisional	missense	c.1009	p.I337V	0.96	"superfamily_SSF53474,HMMPfam_Abhydrolase_1"	"superfamily_SSF53474,HMMPfam_Abhydro_lipase,HMMPfam_Abhydrolase_1,PatternScan_LIPASE_SER"	-	no_errors
STAMBPL1	57559	broad.mit.edu	36	10	90666466	90666466	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	90666466	90666466	C	A	SNP	STAMBPL1	NM_020799	human	genbank	54_36p	1	provisional	missense	c.953	p.A318E	1	"HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232"	"HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232"	-	no_errors
IFIT2	3433	broad.mit.edu	36	10	91056285	91056285	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	91056285	91056285	C	G	SNP	IFIT2	NM_001547	human	genbank	54_36p	1	validated	missense	c.592	p.L198V	0.34	"superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_1"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
KIF20B	9585	broad.mit.edu	36	10	91469206	91469206	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	91469206	91469206	T	C	SNP	KIF20B	NM_016195	human	genbank	54_36p	1	validated	silent	c.1485	p.P495	0.17	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
HTR7	3363	broad.mit.edu	36	10	92499253	92499253	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	92499253	92499253	G	A	SNP	HTR7	NM_019859	human	genbank	54_36p	-1	reviewed	silent	c.618	p.V206	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
IDE	3416	broad.mit.edu	36	10	94224601	94224601	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	94224601	94224601	T	G	SNP	IDE	NM_004969	human	genbank	54_36p	-1	validated	missense	c.2093	p.D698A	1	superfamily_Metalloenz_metal-bd	"superfamily_Metalloenz_metal-bd,HMMPfam_Peptidase_M16,PatternScan_INSULINASE,HMMPfam_Peptidase_M16_C"	-	no_errors
EXOC6	54536	broad.mit.edu	36	10	94644724	94644724	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	94644724	94644724	A	G	SNP	EXOC6	NM_019053	human	genbank	54_36p	1	reviewed	missense	c.379	p.T127A	1	NULL	HMMPfam_Sec15	-	no_errors
CYP26C1	340665	broad.mit.edu	36	10	94818155	94818156	+	Missense_Mutation	DNP	GC	GC	AT	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	94818155	94818156	GC	AT	DNP	CYP26C1	NM_183374	human	genbank	54_36p	1	reviewed	missense	c.1280_1281	p.G427D	1.000:1.000	"superfamily_Cytochrome_P450,HMMPfam_p450"	"superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
MYOF	26509	broad.mit.edu	36	10	95079462	95079462	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	95079462	95079462	C	T	SNP	MYOF	NM_013451	human	genbank	54_36p	-1	reviewed	missense	c.4931	p.R1644Q	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239"	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694"	-	no_errors
MYOF	26509	broad.mit.edu	36	10	95106547	95106547	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	95106547	95106547	T	C	SNP	MYOF	NM_013451	human	genbank	54_36p	-1	reviewed	missense	c.3169	p.I1057V	1	HMMSmart_SM00694	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
MYOF	26509	broad.mit.edu	36	10	95113795	95113795	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	95113795	95113795	G	A	SNP	MYOF	NM_013451	human	genbank	54_36p	-1	reviewed	silent	c.2781	p.H927	1	HMMSmart_SM00693	"HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI"	-	no_errors
MYOF	26509	broad.mit.edu	36	10	95124664	95124665	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	-	-	T	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	95124664	95124665	-	T	INS	MYOF	NM_013451	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2147_2146	p.T716fs	0.201:0.999	HMMPfam_FerA	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694"	-	no_errors
LGI1	9211	broad.mit.edu	36	10	95542597	95542597	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	95542597	95542597	C	G	SNP	LGI1	NM_005097	human	genbank	54_36p	1	reviewed	missense	c.611	p.P204R	0.99	"superfamily_L domain-like,HMMSmart_SM00082"	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_EPTP"	-	no_errors
PLCE1	51196	broad.mit.edu	36	10	95781564	95781564	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	95781564	95781564	C	T	SNP	PLCE1	NM_016341	human	genbank	54_36p	1	validated	silent	c.771	p.D257	0.01	superfamily_Ras GEF	###############################################################################################################################################################################################################################################################	-	no_errors
PLCE1	51196	broad.mit.edu	36	10	95996007	95996007	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	95996007	95996007	A	G	SNP	PLCE1	NM_016341	human	genbank	54_36p	1	validated	missense	c.2735	p.N912S	0.04	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NOC3L	64318	broad.mit.edu	36	10	96089607	96089607	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	96089607	96089607	C	T	SNP	NOC3L	NM_022451	human	genbank	54_36p	-1	provisional	missense	c.1841	p.R614H	1	HMMPfam_CBF	"HMMPfam_NOC3p,HMMPfam_CBF"	-	no_errors
HELLS	3070	broad.mit.edu	36	10	96331226	96331226	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	96331226	96331226	T	C	SNP	HELLS	NM_018063	human	genbank	54_36p	1	reviewed	silent	c.1186	p.L396	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
CYP2C19	1557	broad.mit.edu	36	10	96592593	96592593	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	96592593	96592593	A	G	SNP	CYP2C19	NM_000769	human	genbank	54_36p	1	reviewed	missense	c.971	p.Q324R	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2C19	1557	broad.mit.edu	36	10	96592719	96592719	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	96592719	96592719	T	A	SNP	CYP2C19	NM_000769	human	genbank	54_36p	1	reviewed	missense	c.1097	p.L366Q	0	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
PDLIM1	9124	broad.mit.edu	36	10	97013632	97013632	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	97013632	97013632	C	A	SNP	PDLIM1	NM_020992	human	genbank	54_36p	-1	provisional	missense	c.512	p.G171V	0.01	NULL	"HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ,HMMSmart_ZM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
SORBS1	10580	broad.mit.edu	36	10	97086835	97086835	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	97086835	97086835	T	A	SNP	SORBS1	NM_001034954	human	genbank	54_36p	-1	validated	silent	c.3072	p.S1024	0	NULL	"HMMPfam_Sorb,HMMSmart_SM00459,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
CC2D2B	387707	broad.mit.edu	36	10	97781668	97781668	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	97781668	97781668	A	C	SNP	CC2D2B	NM_001001732	human	genbank	54_36p	1	provisional	missense	c.882	p.E294D	1	NULL	NULL	-	no_errors
CCNJ	54619	broad.mit.edu	36	10	97807950	97807950	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	97807950	97807950	G	A	SNP	CCNJ	NM_019084	human	genbank	54_36p	1	validated	missense	c.1081	p.E361K	1	NULL	"HMMPfam_Cyclin_N,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_C"	-	no_errors
ZNF518A	9849	broad.mit.edu	36	10	97906333	97906333	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	97906333	97906333	G	C	SNP	ZNF518	ENST00000371192	human	ensembl	54_36p	1	known	missense	c.264	p.K88N	0.03	NULL	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF518A	9849	broad.mit.edu	36	10	97906850	97906850	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	97906850	97906850	C	T	SNP	ZNF518	ENST00000371192	human	ensembl	54_36p	1	known	missense	c.781	p.P261S	1	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
DNTT	1791	broad.mit.edu	36	10	98054410	98054410	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	98054410	98054410	G	T	SNP	DNTT	NM_004088	human	genbank	54_36p	1	reviewed	missense	c.166	p.A56S	1	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain"	###############################################################################################################################################################################################################################################################	-	no_errors
TLL2	7093	broad.mit.edu	36	10	98195864	98195864	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	98195864	98195864	T	G	SNP	TLL2	NM_012465	human	genbank	54_36p	-1	reviewed	missense	c.338	p.D113A	0	NULL	"PatternScan_EGF_1,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Astacin,PatternScan_ZINC_PROTEASE,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF"	-	no_errors
PIK3AP1	118788	broad.mit.edu	36	10	98370188	98370188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	98370188	98370188	C	T	SNP	PIK3AP1	NM_152309	human	genbank	54_36p	-1	validated	missense	c.1852	p.G618S	1	NULL	superfamily_Ankyrin repeat	-	no_errors
LCOR	84458	broad.mit.edu	36	10	98698842	98698842	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	98698842	98698842	C	T	SNP	LCOR	NM_032440	human	genbank	54_36p	1	provisional	missense	c.38	p.T13I	1	NULL	HMMPfam_HTH_psq	-	no_errors
LCOR	84458	broad.mit.edu	36	10	98704815	98704815	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	98704815	98704815	A	T	SNP	LCOR	NM_032440	human	genbank	54_36p	1	provisional	nonsense	c.448	p.K150*	1	NULL	HMMPfam_HTH_psq	-	no_errors
C10orf12	26148	broad.mit.edu	36	10	98733844	98733844	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	98733844	98733844	G	A	SNP	C10orf12	NM_015652	human	genbank	54_36p	1	predicted	missense	c.2707	p.V903I	1	NULL	NULL	-	no_errors
SLIT1	6585	broad.mit.edu	36	10	98797726	98797726	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	98797726	98797726	T	A	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	missense	c.1483	p.I495F	1	superfamily_L domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
SLIT1	6585	broad.mit.edu	36	10	98806955	98806955	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	98806955	98806955	A	C	SNP	SLIT1	NM_003061	human	genbank	54_36p	-1	validated	splice_site	c.1157+2	e12+2	1	-	-	-	no_errors
ARHGAP19	84986	broad.mit.edu	36	10	99042323	99042323	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	99042323	99042323	G	A	SNP	ARHGAP19	NM_032900	human	genbank	54_36p	-1	validated	missense	c.52	p.R18W	0.96	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
RRP12	23223	broad.mit.edu	36	10	99140562	99140562	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	99140562	99140562	A	T	SNP	RRP12	NM_015179	human	genbank	54_36p	-1	validated	missense	c.560	p.F187Y	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_NUC173"	-	no_errors
ZDHHC16	84287	broad.mit.edu	36	10	99202176	99202176	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	99202176	99202176	C	T	SNP	ZDHHC16	NM_032327	human	genbank	54_36p	1	validated	silent	c.453	p.I151	0.02	NULL	HMMPfam_zf-DHHC	-	no_errors
ANKRD2	26287	broad.mit.edu	36	10	99333386	99333386	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	99333386	99333386	C	A	SNP	ANKRD2	NM_020349	human	genbank	54_36p	1	validated	missense	c.997	p.H333N	0.98	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
ZFYVE27	118813	broad.mit.edu	36	10	99500132	99500132	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	99500132	99500132	A	G	SNP	ZFYVE27	NM_001002261	human	genbank	54_36p	1	validated	missense	c.719	p.E240G	0.08	NULL	"superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE"	-	no_errors
SFRP5	6425	broad.mit.edu	36	10	99517249	99517275	+	3'UTR	DEL	GAGGAGTGCCCTTCAGTGGGGCTCTGC	-	GAGGAGTGCCCTTCAGTGGGGCTCTGC	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	GAGGAGTGCCCTTCAGTGGGGCTCTGC	GAGGAGTGCCCTTCAGTGGGGCTCTGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	99517249	99517275	GAGGAGTGCCCTTCAGTGGGGCTCTGC	-	DEL	SFRP5	NM_003015	human	genbank	54_36p	-1	reviewed	3_prime_untranslated_region	c.*12	NULL	0.001:0.002:0.002:0.007:0.007:0.004:0.003:0.002:0.031:0.098:0.193:0.219:0.208:0.979:0.981:1.000:1.000:1.000:0.998:0.946:0.944:0.938:0.025:0.022:0.019:0.010:0.093	-	-	"(deletion:utr_exon[99516508,99517260], cds_exon[99517261,99517607])"	no_errors
CRTAC1	55118	broad.mit.edu	36	10	99645147	99645147	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	99645147	99645147	T	A	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	missense	c.1331	p.N444I	1	superfamily_Integrin alpha N-terminal domain	"superfamily_Integrin alpha N-terminal domain,HMMPfam_FG-GAP,HMMPfam_UnbV_ASPIC,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179"	-	no_errors
CRTAC1	55118	broad.mit.edu	36	10	99651312	99651312	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	99651312	99651312	C	T	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	silent	c.1071	p.Q357	1	superfamily_Integrin alpha N-terminal domain	"HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain"	-	no_errors
CRTAC1	55118	broad.mit.edu	36	10	99657889	99657889	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	99657889	99657889	G	A	SNP	CRTAC1	NM_018058	human	genbank	54_36p	-1	validated	nonsense	c.721	p.R241*	1	superfamily_Integrin alpha N-terminal domain	"HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain"	-	no_errors
LOXL4	84171	broad.mit.edu	36	10	100001319	100001319	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	100001319	100001319	G	A	SNP	LOXL4	NM_032211	human	genbank	54_36p	-1	reviewed	silent	c.2082	p.I694	1	HMMPfam_Lysyl_oxidase	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE"	-	no_errors
LOXL4	84171	broad.mit.edu	36	10	100005384	100005384	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	100005384	100005384	C	G	SNP	LOXL4	NM_032211	human	genbank	54_36p	-1	reviewed	missense	c.1531	p.G511R	1	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_LYSYL_OXIDASE"	-	no_errors
LOXL4	84171	broad.mit.edu	36	10	100007887	100007887	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	100007887	100007887	C	T	SNP	LOXL4	NM_032211	human	genbank	54_36p	-1	reviewed	missense	c.946	p.G316R	1	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_LYSYL_OXIDASE"	-	no_errors
HPSE2	60495	broad.mit.edu	36	10	100894116	100894116	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	100894116	100894116	T	A	SNP	HPSE2	NM_021828	human	genbank	54_36p	-1	validated	missense	c.479	p.K160I	1	HMMPfam_Glyco_hydro_79n	HMMPfam_Glyco_hydro_79n	-	no_errors
CNNM1	26507	broad.mit.edu	36	10	101137749	101137749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	101137749	101137749	G	A	SNP	CNNM1	NM_020348	human	genbank	54_36p	1	validated	silent	c.2523	p.P841	0.42	NULL	"HMMPfam_DUF21,HMMPfam_CBS,HMMSmart_CBS"	-	no_errors
NKX2-3	159296	broad.mit.edu	36	10	101282907	101282907	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	101282907	101282907	C	T	SNP	NKX2-3	NM_145285	human	genbank	54_36p	1	validated	missense	c.29	p.T10I	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
COX15	1355	broad.mit.edu	36	10	101477240	101477240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	101477240	101477240	C	T	SNP	COX15	NM_078470	human	genbank	54_36p	-1	reviewed	missense	c.343	p.E115K	1	"superfamily_Trypsin-like serine proteases,HMMPfam_COX15-CtaA"	"superfamily_Trypsin-like serine proteases,HMMPfam_COX15-CtaA"	-	no_errors
ABCC2	1244	broad.mit.edu	36	10	101562876	101562876	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	101562876	101562876	G	T	SNP	ABCC2	NM_000392	human	genbank	54_36p	1	reviewed	silent	c.2079	p.G693	0.97	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
DNMBP	23268	broad.mit.edu	36	10	101629935	101629935	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	101629935	101629935	C	T	SNP	DNMBP	NM_015221	human	genbank	54_36p	-1	validated	missense	c.4171	p.A1391T	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,HMMSmart_SM00721,HMMPfam_BAR"	-	no_errors
DNMBP	23268	broad.mit.edu	36	10	101636204	101636204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	101636204	101636204	C	T	SNP	DNMBP	NM_015221	human	genbank	54_36p	-1	validated	missense	c.3461	p.R1154Q	1	"HMMPfam_BAR,HMMSmart_SM00721"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721,HMMPfam_SH3_2"	-	no_errors
DNMBP	23268	broad.mit.edu	36	10	101649751	101649751	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	101649751	101649751	G	T	SNP	DNMBP	NM_015221	human	genbank	54_36p	-1	validated	missense	c.2617	p.H873N	1	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721,HMMPfam_SH3_2"	-	no_errors
DNMBP	23268	broad.mit.edu	36	10	101721823	101721823	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	101721823	101721823	C	T	SNP	DNMBP	NM_015221	human	genbank	54_36p	-1	validated	missense	c.49	p.V17I	1	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721,HMMPfam_SH3_2"	-	no_errors
PKD2L1	9033	broad.mit.edu	36	10	102041049	102041049	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	102041049	102041049	C	G	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	missense	c.2006	p.R669T	1	NULL	"HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels"	-	no_errors
SEC31B	25956	broad.mit.edu	36	10	102245214	102245214	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	102245214	102245214	G	C	SNP	SEC31B	NM_015490	human	genbank	54_36p	-1	reviewed	missense	c.2390	p.P797R	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
LZTS2	84445	broad.mit.edu	36	10	102753417	102753417	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	102753417	102753417	C	G	SNP	LZTS2	NM_032429	human	genbank	54_36p	1	provisional	missense	c.572	p.S191C	0.71	NULL	HMMPfam_Fez1	-	no_errors
LZTS2	84445	broad.mit.edu	36	10	102753460	102753460	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	102753460	102753460	T	A	SNP	LZTS2	NM_032429	human	genbank	54_36p	1	provisional	missense	c.615	p.F205L	0.96	NULL	HMMPfam_Fez1	-	no_errors
LZTS2	84445	broad.mit.edu	36	10	102753906	102753906	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	102753906	102753906	T	A	SNP	LZTS2	NM_032429	human	genbank	54_36p	1	provisional	missense	c.1061	p.M354K	1	NULL	HMMPfam_Fez1	-	no_errors
KAZALD1	81621	broad.mit.edu	36	10	102812655	102812655	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	102812655	102812655	C	G	SNP	KAZALD1	NM_030929	human	genbank	54_36p	1	reviewed	missense	c.316	p.L106V	1	NULL	"superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_2,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	-	no_errors
BTRC	8945	broad.mit.edu	36	10	103286364	103286364	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	103286364	103286364	T	A	SNP	BTRC	NM_033637	human	genbank	54_36p	1	reviewed	missense	c.1541	p.F514Y	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
MGEA5	10724	broad.mit.edu	36	10	103540644	103540644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	103540644	103540644	T	A	SNP	MGEA5	NM_012215	human	genbank	54_36p	-1	validated	missense	c.2453	p.E818V	1	superfamily_Acyl-CoA N-acyltransferases (Nat)	"HMMPfam_NAGidase,superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
PPRC1	23082	broad.mit.edu	36	10	103887617	103887617	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	103887617	103887617	G	A	SNP	PPRC1	NM_015062	human	genbank	54_36p	1	reviewed	silent	c.174	p.A58	0.81	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
NOLC1	9221	broad.mit.edu	36	10	103909240	103909240	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	103909240	103909240	C	T	SNP	NOLC1	NM_004741	human	genbank	54_36p	1	validated	missense	c.784	p.R262W	0.89	NULL	HMMPfam_SRP40_C	-	no_errors
ELOVL3	83401	broad.mit.edu	36	10	103978940	103978940	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	103978940	103978940	C	A	SNP	ELOVL3	NM_152310	human	genbank	54_36p	1	provisional	missense	c.754	p.H252N	0.02	HMMPfam_ELO	"HMMPfam_ELO,PatternScan_ELO"	-	no_errors
PSD	5662	broad.mit.edu	36	10	104166290	104166290	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	104166290	104166290	C	T	SNP	PSD	NM_002779	human	genbank	54_36p	-1	provisional	missense	c.496	p.A166T	0.02	NULL	"HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
CNNM2	54805	broad.mit.edu	36	10	104669537	104669537	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	104669537	104669537	G	A	SNP	CNNM2	NM_017649	human	genbank	54_36p	1	validated	missense	c.1310	p.G437E	1	NULL	"HMMPfam_DUF21,HMMPfam_CBS"	-	no_errors
TAF5	6877	broad.mit.edu	36	10	105137817	105137817	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	105137817	105137817	T	C	SNP	TAF5	NM_006951	human	genbank	54_36p	1	reviewed	silent	c.2250	p.D750	1	superfamily_WD40 repeat-like	"HMMPfam_TFIID_90kDa,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
PDCD11	22984	broad.mit.edu	36	10	105168268	105168268	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	105168268	105168268	C	T	SNP	PDCD11	NM_014976	human	genbank	54_36p	1	validated	missense	c.1993	p.P665S	1	"superfamily_Nucleic_acid_OB,HMMSmart_S1"	"superfamily_Nucleic_acid_OB,HMMSmart_S1,HMMPfam_S1,superfamily_SSF48452,HMMSmart_HAT"	-	no_errors
NEURL	9148	broad.mit.edu	36	10	105320752	105320752	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	105320752	105320752	G	C	SNP	NEURL	NM_004210	human	genbank	54_36p	1	validated	missense	c.219	p.Q73H	1	"HMMSmart_SM00588,HMMPfam_Neuralized"	"HMMSmart_SM00588,HMMPfam_Neuralized,superfamily_RING/U-box"	-	no_errors
NEURL	9148	broad.mit.edu	36	10	105334913	105334913	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	105334913	105334913	C	T	SNP	NEURL	NM_004210	human	genbank	54_36p	1	validated	missense	c.1280	p.S427L	1	NULL	"HMMPfam_Neuralized,HMMSmart_SM00588,superfamily_RING/U-box"	-	no_errors
SH3PXD2A	9644	broad.mit.edu	36	10	105352548	105352548	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	105352548	105352548	G	A	SNP	SH3PXD2A	NM_014631	human	genbank	54_36p	-1	validated	missense	c.2333	p.T778M	1	NULL	"HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
OBFC1	79991	broad.mit.edu	36	10	105638857	105638857	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	105638857	105638857	G	C	SNP	OBFC1	NM_024928	human	genbank	54_36p	-1	validated	missense	c.912	p.I304M	0.93	HMMPfam_DUF1879	"superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,HMMPfam_DUF1879"	-	no_errors
SLK	9748	broad.mit.edu	36	10	105758054	105758054	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	105758054	105758054	G	T	SNP	SLK	NM_014720	human	genbank	54_36p	1	provisional	nonsense	c.2734	p.E912*	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
COL17A1	1308	broad.mit.edu	36	10	105789739	105789739	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	105789739	105789739	C	A	SNP	COL17A1	NM_000494	human	genbank	54_36p	-1	reviewed	missense	c.2770	p.G924C	1	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
COL17A1	1308	broad.mit.edu	36	10	105809882	105809882	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	105809882	105809882	C	T	SNP	COL17A1	NM_000494	human	genbank	54_36p	-1	reviewed	missense	c.1126	p.A376T	0.79	NULL	HMMPfam_Collagen	-	no_errors
COL17A1	1308	broad.mit.edu	36	10	105827221	105827221	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	105827221	105827221	G	T	SNP	COL17A1	NM_000494	human	genbank	54_36p	-1	reviewed	silent	c.151	p.R51	0.99	NULL	HMMPfam_Collagen	-	no_errors
C10orf79	80217	broad.mit.edu	36	10	105910856	105910856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	105910856	105910856	C	T	SNP	C10orf79	NM_025145	human	genbank	54_36p	-1	predicted	missense	c.3469	p.E1157K	1	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
C10orf79	80217	broad.mit.edu	36	10	105980449	105980449	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	105980449	105980449	C	T	SNP	C10orf79	NM_025145	human	genbank	54_36p	-1	predicted	missense	c.208	p.V70I	1	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
GSTO2	119391	broad.mit.edu	36	10	106047396	106047396	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	106047396	106047396	C	T	SNP	GSTO2	NM_183239	human	genbank	54_36p	1	provisional	missense	c.539	p.P180L	1	superfamily_GST_C_like	"superfamily_Thiordxn-like_fd,HMMPfam_GST_N,superfamily_GST_C_like"	-	no_errors
CCDC147	159686	broad.mit.edu	36	10	106111810	106111810	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	106111810	106111810	G	T	SNP	CCDC147	NM_001008723	human	genbank	54_36p	1	validated	missense	c.331	p.D111Y	1	NULL	NULL	-	no_errors
CCDC147	159686	broad.mit.edu	36	10	106142137	106142137	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	106142137	106142137	G	T	SNP	CCDC147	NM_001008723	human	genbank	54_36p	1	validated	missense	c.1522	p.A508S	1	NULL	NULL	-	no_errors
SORCS3	22986	broad.mit.edu	36	10	106592572	106592572	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	106592572	106592572	C	T	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	silent	c.660	p.F220	1	"superfamily_SSF110296,HMMSmart_VPS10"	"superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD"	-	no_errors
SORCS3	22986	broad.mit.edu	36	10	106665682	106665682	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	10	106665682	106665682	T	C	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	splice_site	c.795+2	e3+2	1	-	-	-	no_errors
SORCS3	22986	broad.mit.edu	36	10	107012096	107012096	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	107012096	107012096	A	T	SNP	SORCS3	NM_014978	human	genbank	54_36p	1	reviewed	missense	c.3461	p.N1154I	1	NULL	"HMMPfam_PKD,superfamily_PKD,HMMSmart_VPS10,superfamily_SSF110296"	-	no_errors
SORCS1	114815	broad.mit.edu	36	10	108913985	108913986	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	108913985	108913986	GC	AA	DNP	SORCS1	NM_001013031	human	genbank	54_36p	-1	reviewed	missense	c.290_289	p.A97L	0.000:0.000	NULL	"superfamily_SSF110296,HMMSmart_VPS10,HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD"	-	no_errors
ADD3	120	broad.mit.edu	36	10	111869023	111869023	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	111869023	111869023	C	T	SNP	ADD3	NM_016824	human	genbank	54_36p	1	reviewed	missense	c.782	p.A261V	1	"superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II"	"superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II"	-	no_errors
DUSP5	1847	broad.mit.edu	36	10	112259970	112259970	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	112259970	112259970	C	A	SNP	DUSP5	NM_004419	human	genbank	54_36p	1	reviewed	silent	c.951	p.I317	1	superfamily_SSF52799	"superfamily_Rhodanese-like,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PDCD4	27250	broad.mit.edu	36	10	112631165	112631165	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	112631165	112631165	G	T	SNP	PDCD4	NM_014456	human	genbank	54_36p	1	reviewed	silent	c.228	p.S76	0.25	NULL	"HMMPfam_MA3,HMMSmart_SM00544"	-	no_errors
SHOC2	8036	broad.mit.edu	36	10	112714797	112714797	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	112714797	112714797	C	T	SNP	SHOC2	NM_007373	human	genbank	54_36p	1	validated	missense	c.691	p.P231S	1	"superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369"	"superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1"	-	no_errors
GPAM	57678	broad.mit.edu	36	10	113923546	113923546	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	113923546	113923546	C	A	SNP	GPAM	NM_020918	human	genbank	54_36p	-1	validated	missense	c.461	p.G154V	0.16	NULL	"superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC"	-	no_errors
TECTB	6975	broad.mit.edu	36	10	114036084	114036084	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	114036084	114036084	T	C	SNP	TECTB	NM_058222	human	genbank	54_36p	1	provisional	missense	c.428	p.V143A	1	"HMMPfam_Zona_pellucida,HMMSmart_ZP"	"HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1"	-	no_errors
TCF7L2	6934	broad.mit.edu	36	10	114895812	114895812	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	114895812	114895812	C	A	SNP	TCF7L2	NM_030756	human	genbank	54_36p	1	validated	missense	c.772	p.P258T	1	NULL	"HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
HABP2	3026	broad.mit.edu	36	10	115327852	115327852	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	115327852	115327852	T	G	SNP	HABP2	NM_004132	human	genbank	54_36p	1	reviewed	missense	c.526	p.C176G	0.93	"HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_Kringle-like,PatternScan_EGF_1"	###############################################################################################################################################################################################################################################################	-	no_errors
NRAP	4892	broad.mit.edu	36	10	115367224	115367224	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	115367224	115367224	T	C	SNP	NRAP	NM_198060	human	genbank	54_36p	-1	validated	missense	c.2953	p.S985G	1	"HMMSmart_SM00227,HMMPfam_Nebulin"	"HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_SM00227,HMMPfam_Nebulin"	-	no_errors
C10orf118	55088	broad.mit.edu	36	10	115907399	115907399	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	115907399	115907399	C	T	SNP	C10orf118	NM_018017	human	genbank	54_36p	-1	validated	silent	c.663	p.E221	0.95	NULL	superfamily_Prefoldin	-	no_errors
VWA2	340706	broad.mit.edu	36	10	116027764	116027764	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	116027764	116027764	G	T	SNP	VWA2	NM_198496	human	genbank	54_36p	1	provisional	missense	c.668	p.S223I	0.03	"superfamily_SSF53300,HMMSmart_VWA"	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF"	-	no_errors
VWA2	340706	broad.mit.edu	36	10	116038746	116038746	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	116038746	116038746	C	A	SNP	VWA2	NM_198496	human	genbank	54_36p	1	provisional	missense	c.1630	p.P544T	0.02	"HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300"	"HMMPfam_VWA,HMMSmart_VWA,HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF53300,superfamily_SSF57196"	-	no_errors
ATRNL1	26033	broad.mit.edu	36	10	117016300	117016300	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	117016300	117016300	C	T	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	silent	c.1809	p.L603	0.94	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1"	###############################################################################################################################################################################################################################################################	-	no_errors
ATRNL1	26033	broad.mit.edu	36	10	117016428	117016428	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	117016428	117016428	G	T	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	missense	c.1937	p.G646V	0.99	"HMMSmart_SM00423,superfamily_Plexin repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
ATRNL1	26033	broad.mit.edu	36	10	117030924	117030924	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	117030924	117030924	A	T	SNP	ATRNL1	NM_207303	human	genbank	54_36p	1	validated	missense	c.2170	p.S724C	1	"HMMPfam_PSI,HMMSmart_SM00423"	###############################################################################################################################################################################################################################################################	-	no_errors
GFRA1	2674	broad.mit.edu	36	10	117846194	117846194	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	117846194	117846194	T	A	SNP	GFRA1	NM_005264	human	genbank	54_36p	-1	reviewed	missense	c.842	p.N281I	1	"superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF"	"superfamily_GDNF receptor-like (Pfam 02351),HMMPfam_GDNF"	-	no_errors
GFRA1	2674	broad.mit.edu	36	10	117961132	117961132	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	117961132	117961132	C	A	SNP	GFRA1	NM_005264	human	genbank	54_36p	-1	reviewed	splice_site	c.433+1	e4+1	1	-	-	-	no_errors
C10orf96	374355	broad.mit.edu	36	10	118091583	118091583	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	118091583	118091583	A	C	SNP	C10orf96	NM_198515	human	genbank	54_36p	1	validated	missense	c.328	p.K110Q	1	NULL	NULL	-	no_errors
PNLIPRP3	119548	broad.mit.edu	36	10	118210534	118210534	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	118210534	118210534	C	G	SNP	PNLIPRP3	NM_001011709	human	genbank	54_36p	1	validated	missense	c.632	p.A211G	0.99	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,PatternScan_HMG_COA_REDUCTASE_1"	-	no_errors
PNLIP	5406	broad.mit.edu	36	10	118305559	118305559	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	118305559	118305559	G	C	SNP	PNLIP	NM_000936	human	genbank	54_36p	1	reviewed	missense	c.869	p.S290T	1	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
HSPA12A	259217	broad.mit.edu	36	10	118424738	118424738	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	118424738	118424738	G	A	SNP	HSPA12A	NM_025015	human	genbank	54_36p	-1	validated	silent	c.1572	p.D524	1	NULL	"PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF53067"	-	no_errors
KCNK18	338567	broad.mit.edu	36	10	118950726	118950726	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	118950726	118950726	G	T	SNP	KCNK18	NM_181840	human	genbank	54_36p	1	provisional	missense	c.290	p.R97M	0	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	"superfamily_SSF81324,HMMPfam_Ion_trans_2"	-	no_errors
EMX2	2018	broad.mit.edu	36	10	119292944	119292944	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	119292944	119292944	C	T	SNP	EMX2	NM_004098	human	genbank	54_36p	1	validated	missense	c.176	p.A59V	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PRLHR	2834	broad.mit.edu	36	10	120343884	120343884	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	120343884	120343884	G	T	SNP	PRLHR	NM_004248	human	genbank	54_36p	-1	validated	missense	c.863	p.A288D	0.67	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
C10orf46	143384	broad.mit.edu	36	10	120504057	120504057	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	120504057	120504057	G	C	SNP	C10orf46	NM_153810	human	genbank	54_36p	-1	validated	missense	c.208	p.P70A	0.99	NULL	"superfamily_Cullin repeat,HMMPfam_Cullin"	-	no_errors
FAM45A	404636	broad.mit.edu	36	10	120873066	120873066	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	120873066	120873066	G	A	SNP	FAM45A	NM_207009	human	genbank	54_36p	1	validated	missense	c.689	p.C230Y	1	NULL	NULL	-	no_errors
FAM45A	404636	broad.mit.edu	36	10	120882025	120882025	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	120882025	120882025	G	A	SNP	FAM45A	NM_207009	human	genbank	54_36p	1	validated	missense	c.811	p.A271T	1	NULL	NULL	-	no_errors
TIAL1	7073	broad.mit.edu	36	10	121331469	121331469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	121331469	121331469	G	A	SNP	TIAL1	NM_001033925	human	genbank	54_36p	-1	reviewed	missense	c.377	p.T126I	0.99	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
INPP5F	22876	broad.mit.edu	36	10	121561360	121561360	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	121561360	121561360	G	A	SNP	INPP5F	NM_014937	human	genbank	54_36p	1	reviewed	missense	c.1789	p.E597K	1	NULL	HMMPfam_Syja_N	-	no_errors
C10orf119	79892	broad.mit.edu	36	10	121602679	121602679	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	121602679	121602679	G	C	SNP	C10orf119	NM_024834	human	genbank	54_36p	-1	validated	missense	c.447	p.N149K	1	HMMPfam_DUF2044	HMMPfam_DUF2044	-	no_errors
SEC23IP	11196	broad.mit.edu	36	10	121675724	121675724	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	121675724	121675724	G	A	SNP	SEC23IP	NM_007190	human	genbank	54_36p	1	reviewed	missense	c.2308	p.G770R	1	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_DDHD"	-	no_errors
PPAPDC1A	196051	broad.mit.edu	36	10	122324720	122324720	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	122324720	122324720	G	A	SNP	PPAPDC1A	NM_001030059	human	genbank	54_36p	1	validated	missense	c.533	p.R178Q	1	"superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMSmart_SM00014,HMMPfam_PAP2"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMSmart_SM00014,HMMPfam_PAP2"	-	no_errors
TACC2	10579	broad.mit.edu	36	10	123893177	123893177	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	123893177	123893177	C	G	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.5800	p.P1934A	0	NULL	HMMPfam_TACC	-	no_errors
TACC2	10579	broad.mit.edu	36	10	123999132	123999132	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	123999132	123999132	T	C	SNP	TACC2	NM_206862	human	genbank	54_36p	1	reviewed	missense	c.8744	p.L2915P	1	HMMPfam_TACC	HMMPfam_TACC	-	no_errors
DMBT1	1755	broad.mit.edu	36	10	124367800	124367800	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	124367800	124367800	C	T	SNP	DMBT1	NM_007329	human	genbank	54_36p	1	reviewed	silent	c.4782	p.L1594	0.01	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
DMBT1	1755	broad.mit.edu	36	10	124380539	124380539	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	124380539	124380539	G	T	SNP	DMBT1	NM_007329	human	genbank	54_36p	1	reviewed	missense	c.5711	p.G1904V	0	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMSmart_SM00202,superfamily_SRCR-like,PatternScan_ZP_1"	-	no_errors
CUZD1	50624	broad.mit.edu	36	10	124588689	124588689	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	124588689	124588689	G	A	SNP	CUZD1	NM_022034	human	genbank	54_36p	-1	provisional	silent	c.282	p.D94	0.98	"superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB"	"superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB,HMMPfam_Zona_pellucida,HMMSmart_SM00241"	-	no_errors
ACADSB	36	broad.mit.edu	36	10	124790132	124790132	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	124790132	124790132	C	G	SNP	ACADSB	NM_001609	human	genbank	54_36p	1	reviewed	missense	c.464	p.T155R	1	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N"	"superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_Acyl-CoA_dh_1,PatternScan_ACYL_COA_DH_2"	-	no_errors
BUB3	9184	broad.mit.edu	36	10	124911860	124911860	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	124911860	124911860	A	G	SNP	BUB3	NM_004725	human	genbank	54_36p	1	reviewed	missense	c.695	p.E232G	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
CHST15	51363	broad.mit.edu	36	10	125759819	125759819	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	125759819	125759819	A	G	SNP	GALNAC4S-6ST	NM_015892	human	genbank	54_36p	-1	validated	silent	c.1522	p.L508	0.91	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
FAM53B	9679	broad.mit.edu	36	10	126360325	126360325	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	126360325	126360325	T	G	SNP	FAM53B	NM_014661	human	genbank	54_36p	-1	validated	silent	c.747	p.T249	0.86	NULL	NULL	-	no_errors
ZRANB1	54764	broad.mit.edu	36	10	126663340	126663340	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	126663340	126663340	A	G	SNP	ZRANB1	NM_017580	human	genbank	54_36p	1	validated	missense	c.1916	p.N639S	1	NULL	"HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_SSF90209,HMMPfam_OTU"	-	no_errors
C10orf137	26098	broad.mit.edu	36	10	127404246	127404246	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	127404246	127404246	A	G	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	missense	c.641	p.N214S	1	NULL	NULL	-	no_errors
C10orf137	26098	broad.mit.edu	36	10	127414265	127414265	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	127414265	127414265	A	G	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	silent	c.1458	p.E486	1	NULL	NULL	-	no_errors
C10orf137	26098	broad.mit.edu	36	10	127414447	127414447	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	127414447	127414447	C	A	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	missense	c.1640	p.S547Y	1	NULL	NULL	-	no_errors
C10orf137	26098	broad.mit.edu	36	10	127419175	127419175	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	127419175	127419175	C	T	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	missense	c.2033	p.A678V	1	NULL	NULL	-	no_errors
C10orf137	26098	broad.mit.edu	36	10	127426434	127426434	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	127426434	127426434	G	T	SNP	C10orf137	NM_015608	human	genbank	54_36p	1	validated	missense	c.2884	p.V962F	1	NULL	NULL	-	no_errors
MMP21	118856	broad.mit.edu	36	10	127450866	127450866	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	127450866	127450866	G	A	SNP	MMP21	NM_147191	human	genbank	54_36p	-1	reviewed	missense	c.890	p.T297M	0.01	"HMMSmart_SM00235,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M10"	"superfamily_PGBD-like,HMMPfam_PG_binding_1,HMMSmart_SM00235,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M10,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	-	no_errors
DHX32	55760	broad.mit.edu	36	10	127516868	127516868	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	127516868	127516868	C	A	SNP	DHX32	NM_018180	human	genbank	54_36p	-1	reviewed	missense	c.1960	p.G654C	0.01	HMMPfam_DUF1605	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
FANK1	92565	broad.mit.edu	36	10	127687025	127687025	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	127687025	127687025	G	A	SNP	FANK1	NM_145235	human	genbank	54_36p	1	validated	silent	c.765	p.S255	0.07	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank"	-	no_errors
DOCK1	1793	broad.mit.edu	36	10	128687675	128687675	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	128687675	128687675	C	T	SNP	DOCK1	ENST00000398025	human	ensembl	54_36p	1	known	nonsense	c.835	p.R279*	1	NULL	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Cytochrome_c"	-	no_errors
DOCK1	1793	broad.mit.edu	36	10	128815893	128815928	+	Splice_Site	DEL	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	-	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	10	128815893	128815928	GTTGGTGTTCATTGGTGTGTCCTTCCCCAGGGGCCA	-	DEL	DOCK1	ENST00000398025	human	ensembl	54_36p	1	known	splice_site_del	c.2689-30_2689-1	e27-1	0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.004:0.148:0.170:0.185:0.001:0.001:0.002:0.000:0.000:0.000:0.001:0.002:0.037:0.058:0.111:0.216:0.168:0.136:0.115:0.083:0.992:1.000:1.000:1.000:0.998:0.539:0.965:0.966:0.644	-	-	"(deletion:intron[128813856,128815922], cds_exon[128815923,128816018])"	no_errors
FAM196A	642938	broad.mit.edu	36	10	128864373	128864373	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	128864373	128864373	G	A	SNP	C10orf141	NM_001039762	human	genbank	54_36p	-1	validated	missense	c.277	p.R93C	1	NULL	NULL	-	no_errors
DOCK1	1793	broad.mit.edu	36	10	129097358	129097359	+	Missense_Mutation	DNP	CT	CT	AG	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	129097358	129097359	CT	AG	DNP	DOCK1	ENST00000398025	human	ensembl	54_36p	1	known	missense	c.4325_4326	p.T1442K	1.000:0.999	NULL	"HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_Cytochrome_c"	-	no_errors
MKI67	4288	broad.mit.edu	36	10	129797435	129797435	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	10	129797435	129797435	G	A	SNP	MKI67	NM_002417	human	genbank	54_36p	-1	reviewed	silent	c.2659	p.L887	0	NULL	"HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain,HMMPfam_K167R"	-	no_errors
MGMT	4255	broad.mit.edu	36	10	131396251	131396251	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	131396251	131396251	C	T	SNP	MGMT	NM_002412	human	genbank	54_36p	1	validated	silent	c.228	p.I76	0	"HMMPfam_Methyltransf_1N,superfamily_SSF53155"	"HMMPfam_Methyltransf_1N,superfamily_SSF53155,superfamily_MethylDNA_cys_mtrans_DNA_bd,HMMPfam_DNA_binding_1,PatternScan_MGMT"	-	no_errors
EBF3	253738	broad.mit.edu	36	10	131647189	131647189	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	131647189	131647189	T	C	SNP	EBF3	NM_001005463	human	genbank	54_36p	-1	validated	missense	c.484	p.S162G	1	PatternScan_COE	"PatternScan_COE,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
TCERG1L	256536	broad.mit.edu	36	10	132996519	132996519	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	10	132996519	132996519	C	T	SNP	TCERG1L	NM_174937	human	genbank	54_36p	-1	validated	silent	c.615	p.P205	0.87	NULL	"PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,superfamily_FF,HMMSmart_FF,HMMPfam_FF"	-	no_errors
JAKMIP3	282973	broad.mit.edu	36	10	133817298	133817298	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	133817298	133817298	A	G	SNP	JAKMIP3	NM_001105521	human	genbank	54_36p	1	provisional	missense	c.2113	p.M705V	1	NULL	NULL	-	no_errors
DPYSL4	10570	broad.mit.edu	36	10	133858397	133858398	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	133858397	133858398	GG	AA	DNP	DPYSL4	NM_006426	human	genbank	54_36p	1	validated	missense	c.372_373	p.E125K	0.988:0.994	"superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases"	"superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases"	-	no_errors
C10orf91	170393	broad.mit.edu	36	10	134111455	134111455	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	134111455	134111455	A	G	SNP	C10orf91	NM_173541	human	genbank	54_36p	1	validated	missense	c.338	p.D113G	0.03	NULL	NULL	-	no_errors
TUBGCP2	10844	broad.mit.edu	36	10	134945817	134945817	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	134945817	134945817	T	C	SNP	TUBGCP2	NM_006659	human	genbank	54_36p	-1	validated	missense	c.2309	p.K770R	0.91	NULL	HMMPfam_Spc97_Spc98	-	no_errors
TUBGCP2	10844	broad.mit.edu	36	10	134953410	134953410	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	10	134953410	134953410	T	C	SNP	TUBGCP2	NM_006659	human	genbank	54_36p	-1	validated	missense	c.1268	p.Y423C	1	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
ZNF511	118472	broad.mit.edu	36	10	134973378	134973378	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	134973378	134973378	C	T	SNP	ZNF511	NM_145806	human	genbank	54_36p	1	provisional	silent	c.336	p.C112	0.99	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ECHS1	1892	broad.mit.edu	36	10	135030489	135030489	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	135030489	135030489	T	A	SNP	ECHS1	NM_004092	human	genbank	54_36p	-1	reviewed	splice_site	c.515-2	e5-2	1	-	-	-	no_errors
MTG1	92170	broad.mit.edu	36	10	135082980	135082980	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	135082980	135082980	G	C	SNP	MTG1	NM_138384	human	genbank	54_36p	1	validated	silent	c.759	p.V253	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1"	-	no_errors
CYP2E1	1571	broad.mit.edu	36	10	135192003	135192003	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	135192003	135192003	C	G	SNP	CYP2E1	NM_000773	human	genbank	54_36p	1	reviewed	missense	c.206	p.T69R	0.97	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
FRG2B	441581	broad.mit.edu	36	10	135288790	135288790	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	10	135288790	135288790	G	A	SNP	FRG2B	NM_001080998	human	genbank	54_36p	-1	provisional	missense	c.640	p.R214W	0.99	NULL	NULL	-	no_errors
ODF3	113746	broad.mit.edu	36	11	187577	187577	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	187577	187577	G	A	SNP	ODF3	NM_053280	human	genbank	54_36p	1	provisional	silent	c.126	p.T42	0.99	NULL	HMMPfam_DUF1309	-	no_errors
PSMD13	5719	broad.mit.edu	36	11	237370	237370	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	237370	237370	C	G	SNP	PSMD13	NM_175932	human	genbank	54_36p	1	validated	missense	c.496	p.Q166E	1	NULL	"HMMPfam_PCI,HMMSmart_PINT,superfamily_SSF46785"	-	no_errors
B4GALNT4	338707	broad.mit.edu	36	11	366331	366331	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	366331	366331	T	A	SNP	B4GALNT4	NM_178537	human	genbank	54_36p	1	provisional	missense	c.1277	p.F426Y	1	NULL	"HMMSmart_PA14,HMMPfam_PA14,HMMPfam_CHGN,superfamily_SSF53448"	-	no_errors
ANO9	338440	broad.mit.edu	36	11	423411	423411	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	423411	423411	T	C	SNP	ANO9	NM_001012302	human	genbank	54_36p	-1	validated	missense	c.253	p.S85G	0	NULL	HMMPfam_DUF590	-	no_errors
PHRF1	57661	broad.mit.edu	36	11	596502	596502	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	596502	596502	G	T	SNP	PHRF1	NM_020901	human	genbank	54_36p	1	validated	silent	c.1515	p.L505	0.99	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD"	-	no_errors
PHRF1	57661	broad.mit.edu	36	11	598503	598514	+	In_Frame_Del	DEL	GGACGCGCTCTG	-	GGACGCGCTCTG	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	GGACGCGCTCTG	GGACGCGCTCTG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	598503	598514	GGACGCGCTCTG	-	DEL	PHRF1	NM_020901	human	genbank	54_36p	1	validated	in_frame_del	c.3047_3058	p.GTRS1020in_frame_del	0.001:0.000:0.000:0.002:0.000:0.002:0.000:0.000:0.002:0.003:0.000:0.001	NULL	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD"	"(deletion:cds_exon[597066,599720])"	no_errors
CDHR5	53841	broad.mit.edu	36	11	611393	611393	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	611393	611393	G	A	SNP	MUPCDH	NM_021924	human	genbank	54_36p	-1	reviewed	silent	c.570	p.P190	0	"superfamily_Cadherin-like,HMMSmart_SM00112"	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
CHID1	66005	broad.mit.edu	36	11	890012	890012	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	890012	890012	C	G	SNP	CHID1	NM_023947	human	genbank	54_36p	-1	validated	missense	c.538	p.V180L	0.99	"HMMSmart_SM00636,superfamily_(Trans)glycosidases"	"HMMSmart_SM00636,superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_18"	-	no_errors
AP2A2	161	broad.mit.edu	36	11	984220	984220	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	984220	984220	C	G	SNP	AP2A2	NM_012305	human	genbank	54_36p	1	validated	missense	c.1931	p.P644R	0.91	NULL	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain"	-	no_errors
MUC6	4588	broad.mit.edu	36	11	1008575	1008575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	1008575	1008575	G	T	SNP	MUC6	NM_005961	human	genbank	54_36p	-1	validated	missense	c.4226	p.P1409Q	0	NULL	"HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041"	-	no_errors
MUC2	4583	broad.mit.edu	36	11	1072622	1072622	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	1072622	1072622	A	G	SNP	MUC2	ENST00000359061	human	ensembl	54_36p	1	known	missense	c.1871	p.N624S	0	HMMPfam_C8	"HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors"	-	no_stop_codon
MUC2	4583	broad.mit.edu	36	11	1082891	1082891	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	1082891	1082891	C	A	SNP	MUC2	ENST00000359061	human	ensembl	54_36p	1	known	silent	c.4713	p.T1571	0.85	NULL	"HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8"	-	no_stop_codon
MUC5B	727897	broad.mit.edu	36	11	1204570	1204570	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	1204570	1204570	C	A	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.349	p.Q117K	0.99	"HMMSmart_SM00216,HMMPfam_VWD"	"HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1"	-	no_errors
MUC5B	727897	broad.mit.edu	36	11	1222407	1222407	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	1222407	1222407	T	C	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.7730	p.V2577A	0	NULL	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
MUC5B	727897	broad.mit.edu	36	11	1226973	1226978	+	In_Frame_Del	DEL	CCACGG	-	CCACGG	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	CCACGG	CCACGG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	1226973	1226978	CCACGG	-	DEL	MUC5B	NM_002458	human	genbank	54_36p	1	validated	in_frame_del	c.12296_12301	p.AT4103in_frame_del	0.061:0.055:0.037:0.021:0.006:0.002	NULL	"HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1"	"(deletion:cds_exon[1218657,1229549])"	no_errors
MUC5B	727897	broad.mit.edu	36	11	1227452	1227452	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	1227452	1227452	A	C	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.12775	p.T4259P	0	NULL	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
MUC5B	727897	broad.mit.edu	36	11	1229130	1229130	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	1229130	1229130	C	T	SNP	MUC5B	NM_002458	human	genbank	54_36p	1	validated	missense	c.14453	p.T4818M	0	NULL	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
MOB2	81532	broad.mit.edu	36	11	1448161	1448161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	1448161	1448161	C	T	SNP	MOB2	NM_053005	human	genbank	54_36p	-1	provisional	missense	c.514	p.A172T	0.44	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KRTAP5-3	387266	broad.mit.edu	36	11	1586141	1586141	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	1586141	1586141	A	G	SNP	KRTAP5-3	NM_001012708	human	genbank	54_36p	-1	validated	silent	c.51	p.C17	0.99	NULL	"PatternScan_4FE4S_FER_1,PatternScan_VWFC_1"	-	no_errors
KRTAP5-5	439915	broad.mit.edu	36	11	1608162	1608191	+	In_Frame_Del	DEL	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	-	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	1608162	1608191	CTGCTGCCAGTCCAGCTGCTGTAAGCCTTA	-	DEL	KRTAP5-5	NM_001001480	human	genbank	54_36p	1	validated	in_frame_del	c.516_545	p.SSCCKPYCCQ176in_frame_del	0.004:0.034:0.035:0.031:0.041:0.050:0.053:0.060:0.079:0.129:0.209:0.999:1.000:1.000:1.000:0.998:0.975:0.901:0.121:0.080:0.069:0.063:0.018:0.002:0.000:0.004:0.013:0.075:0.166:0.439	NULL	"PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_2FE2S_FER_1"	"(deletion:cds_exon[1607647,1608360])"	no_errors
SYT8	90019	broad.mit.edu	36	11	1815036	1815036	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	1815036	1815036	G	T	SNP	SYT8	NM_138567	human	genbank	54_36p	1	validated	silent	c.1005	p.L335	0	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
MRPL23	6150	broad.mit.edu	36	11	1928740	1928740	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	1928740	1928740	G	C	SNP	MRPL23	NM_021134	human	genbank	54_36p	1	reviewed	missense	c.53	p.R18P	0.99	superfamily_L23_L15e_core	"superfamily_L23_L15e_core,HMMPfam_Ribosomal_L23"	-	no_errors
TSPAN32	10077	broad.mit.edu	36	11	2295678	2295679	+	Missense_Mutation	DNP	GC	GC	TG	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	2295678	2295679	GC	TG	DNP	TSPAN32	NM_139022	human	genbank	54_36p	1	reviewed	missense	c.1016_1017	p.G339V	0.008:0.018	NULL	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	-	no_errors
TRPM5	29850	broad.mit.edu	36	11	2389306	2389306	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	2389306	2389306	G	A	SNP	TRPM5	NM_014555	human	genbank	54_36p	-1	validated	silent	c.2634	p.F878	1	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
KCNQ1	3784	broad.mit.edu	36	11	2825597	2825597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	2825597	2825597	G	C	SNP	KCNQ1	NM_000218	human	genbank	54_36p	1	reviewed	missense	c.1819	p.A607P	0.97	HMMPfam_KCNQ_channel	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
SLC22A18	5002	broad.mit.edu	36	11	2902983	2902983	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	2902983	2902983	A	T	SNP	SLC22A18	NM_183233	human	genbank	54_36p	1	reviewed	missense	c.1255	p.R419W	0	superfamily_MFS_gen_substrate_transporter	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
CARS	833	broad.mit.edu	36	11	2984708	2984708	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	2984708	2984708	C	A	SNP	CARS	NM_001014437	human	genbank	54_36p	-1	reviewed	missense	c.2126	p.G709V	1	NULL	"HMMPfam_tRNA-synt_1e,superfamily_SSF52374"	-	no_errors
MRGPRE	116534	broad.mit.edu	36	11	3206566	3206566	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	3206566	3206566	C	T	SNP	MRGPRE	NM_001039165	human	genbank	54_36p	-1	validated	missense	c.37	p.A13T	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
ART5	116969	broad.mit.edu	36	11	3617997	3617997	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	3617997	3617997	G	A	SNP	ART5	NM_001079536	human	genbank	54_36p	-1	reviewed	nonsense	c.238	p.R80*	0	"superfamily_ADP-ribosylation,HMMPfam_ART"	"superfamily_ADP-ribosylation,HMMPfam_ART,PatternScan_ART"	-	no_errors
CHRNA10	57053	broad.mit.edu	36	11	3644188	3644188	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	3644188	3644188	A	G	SNP	CHRNA10	NM_020402	human	genbank	54_36p	-1	provisional	missense	c.1078	p.S360P	0	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
C11orf40	143501	broad.mit.edu	36	11	4551123	4551123	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	4551123	4551123	G	T	SNP	C11orf40	NM_144663	human	genbank	54_36p	-1	predicted	nonsense	c.297	p.C99*	0	NULL	NULL	-	no_errors
OR52I1	390037	broad.mit.edu	36	11	4572239	4572239	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	4572239	4572239	A	G	SNP	OR52I1	NM_001005169	human	genbank	54_36p	1	provisional	missense	c.395	p.K132R	0.95	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51E2	81285	broad.mit.edu	36	11	4659803	4659803	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	4659803	4659803	T	C	SNP	OR51E2	NM_030774	human	genbank	54_36p	-1	validated	missense	c.715	p.T239A	0.99	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51F1	256892	broad.mit.edu	36	11	4747057	4747057	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	4747057	4747057	T	C	SNP	OR51F1	NM_001004752	human	genbank	54_36p	-1	provisional	missense	c.667	p.I223V	0.55	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51F2	119694	broad.mit.edu	36	11	4800137	4800137	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	4800137	4800137	G	A	SNP	OR51F2	NM_001004753	human	genbank	54_36p	1	provisional	missense	c.946	p.A316T	0.02	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51S1	119692	broad.mit.edu	36	11	4826625	4826625	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	4826625	4826625	C	G	SNP	OR51S1	NM_001004758	human	genbank	54_36p	-1	provisional	silent	c.390	p.R130	0.04	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"PatternScan_SPASE_I_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR51T1	401665	broad.mit.edu	36	11	4860131	4860131	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	4860131	4860131	G	A	SNP	OR51T1	NM_001004759	human	genbank	54_36p	1	provisional	missense	c.507	p.M169I	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR51G1	79324	broad.mit.edu	36	11	4901485	4901485	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	4901485	4901485	C	T	SNP	OR51G1	NM_001005237	human	genbank	54_36p	-1	provisional	missense	c.661	p.A221T	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR52E2	119678	broad.mit.edu	36	11	5036540	5036540	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5036540	5036540	C	T	SNP	OR52E2	NM_001005164	human	genbank	54_36p	-1	provisional	silent	c.894	p.K298	0.28	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR52E2	119678	broad.mit.edu	36	11	5037170	5037170	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5037170	5037170	C	T	SNP	OR52E2	NM_001005164	human	genbank	54_36p	-1	provisional	nonsense	c.264	p.W88*	0.69	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR52A4	390053	broad.mit.edu	36	11	5098539	5098539	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5098539	5098539	G	C	SNP	OR52A4	NM_001005222	human	genbank	54_36p	-1	provisional	silent	c.846	p.V282	0.03	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR52A4	390053	broad.mit.edu	36	11	5098948	5098948	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	5098948	5098948	G	T	SNP	OR52A4	NM_001005222	human	genbank	54_36p	-1	provisional	missense	c.437	p.T146N	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR52A4	390053	broad.mit.edu	36	11	5099082	5099082	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5099082	5099082	G	C	SNP	OR52A4	NM_001005222	human	genbank	54_36p	-1	provisional	missense	c.303	p.C101W	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
HBD	3045	broad.mit.edu	36	11	5211992	5211992	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5211992	5211992	C	G	SNP	HBD	NM_000519	human	genbank	54_36p	-1	reviewed	missense	c.120	p.Q40H	1	"superfamily_Globin-like,HMMPfam_Globin"	"superfamily_Globin-like,HMMPfam_Globin"	-	no_errors
OR51B2	79345	broad.mit.edu	36	11	5301308	5301308	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5301308	5301308	C	T	SNP	OR51B2	NM_033180	human	genbank	54_36p	-1	validated	missense	c.796	p.V266M	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR51B6	390058	broad.mit.edu	36	11	5329645	5329645	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5329645	5329645	G	A	SNP	OR51B6	NM_001004750	human	genbank	54_36p	1	provisional	missense	c.332	p.G111D	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR51Q1	390061	broad.mit.edu	36	11	5400269	5400269	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5400269	5400269	G	T	SNP	OR51Q1	NM_001004757	human	genbank	54_36p	1	provisional	missense	c.263	p.W88L	0.07	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
UBQLN3	50613	broad.mit.edu	36	11	5485405	5485405	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	5485405	5485405	G	C	SNP	UBQLN3	NM_017481	human	genbank	54_36p	-1	reviewed	missense	c.1960	p.Q654E	0.36	"superfamily_UBA_like,HMMSmart_UBA"	"PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin,HMMSmart_STI1,superfamily_UBA_like,HMMSmart_UBA,HMMPfam_UBA"	-	no_errors
UBQLN3	50613	broad.mit.edu	36	11	5486049	5486049	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5486049	5486049	G	A	SNP	UBQLN3	NM_017481	human	genbank	54_36p	-1	reviewed	missense	c.1316	p.T439I	0	NULL	"HMMPfam_UBA,HMMPfam_ubiquitin,HMMSmart_UBQ,HMMSmart_STI1,superfamily_UBA_like,HMMSmart_UBA,PatternScan_UBIQUITIN_1,superfamily_SSF54236"	-	no_errors
OR52B6	340980	broad.mit.edu	36	11	5559626	5559626	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5559626	5559626	G	T	SNP	OR52B6	NM_001005162	human	genbank	54_36p	1	validated	missense	c.944	p.R315M	0.99	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5610315	5610315	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5610315	5610315	G	C	SNP	TRIM6-TRIM34	NM_001003819	human	genbank	54_36p	1	reviewed	missense	c.1240	p.G414R	0.04	superfamily_SSF57850	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY,HMMSmart_SPRY"	-	no_errors
TRIM5	85363	broad.mit.edu	36	11	5657570	5657570	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	5657570	5657570	G	T	SNP	TRIM5	NM_033034	human	genbank	54_36p	-1	reviewed	nonsense	c.414	p.Y138*	0.85	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
TRIM5	85363	broad.mit.edu	36	11	5657862	5657862	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5657862	5657862	G	A	SNP	TRIM5	NM_033034	human	genbank	54_36p	-1	reviewed	missense	c.122	p.A41V	0	"HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
OR52N4	390072	broad.mit.edu	36	11	5732659	5732659	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	5732659	5732659	T	A	SNP	OR52N4	NM_001005175	human	genbank	54_36p	1	validated	missense	c.113	p.V38D	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR52N5	390075	broad.mit.edu	36	11	5756083	5756083	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	5756083	5756083	C	A	SNP	OR52N5	NM_001001922	human	genbank	54_36p	-1	provisional	nonsense	c.358	p.E120*	0.44	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR52N2	390077	broad.mit.edu	36	11	5798297	5798332	+	In_Frame_Del	DEL	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	-	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	-	-	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	5798297	5798332	CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT	-	DEL	OR52N2	NM_001005174	human	genbank	54_36p	1	provisional	in_frame_del	c.156_191	p.HEEALHRPMYYF53in_frame_del	0.000:0.001:0.088:0.225:0.230:0.298:0.200:0.189:0.174:0.061:0.052:0.060:0.082:0.966:0.999:0.998:1.000:0.987:0.213:0.176:0.201:0.269:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:0.994:0.993:0.975:0.984:0.981	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[5798142,5799107])"	no_errors
OR52E4	390081	broad.mit.edu	36	11	5862716	5862716	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	5862716	5862716	T	C	SNP	OR52E4	NM_001005165	human	genbank	54_36p	1	provisional	silent	c.618	p.S206	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR56A1	120796	broad.mit.edu	36	11	6005489	6005489	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	6005489	6005489	G	T	SNP	OR56A1	NM_001001917	human	genbank	54_36p	-1	provisional	missense	c.22	p.P8T	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
C11orf42	160298	broad.mit.edu	36	11	6188834	6188834	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	6188834	6188834	G	A	SNP	C11orf42	NM_173525	human	genbank	54_36p	1	predicted	missense	c.988	p.D330N	1	NULL	NULL	-	no_errors
FAM160A2	84067	broad.mit.edu	36	11	6195856	6195856	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	6195856	6195856	A	C	SNP	FAM160A2	NM_032127	human	genbank	54_36p	-1	validated	silent	c.1578	p.G526	1	NULL	HMMPfam_RAI16-like	-	no_errors
SMPD1	6609	broad.mit.edu	36	11	6372317	6372317	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	6372317	6372317	T	G	SNP	SMPD1	NM_000543	human	genbank	54_36p	1	reviewed	silent	c.1800	p.S600	0.97	NULL	"superfamily_Saposin,HMMSmart_SM00741,HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases"	-	no_errors
TRIM3	10612	broad.mit.edu	36	11	6434785	6434785	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6434785	6434785	G	A	SNP	TRIM3	NM_006458	human	genbank	54_36p	-1	reviewed	silent	c.747	p.G249	0.98	HMMSmart_SM00502	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557,superfamily_NHL repeat,HMMPfam_NHL"	-	no_errors
DNHD1	144132	broad.mit.edu	36	11	6548900	6548900	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6548900	6548900	C	G	SNP	uc001mec.1	ENST00000354346	human	ensembl	54_36p	1	known	missense	c.2653	p.L885V	0.99	HMMPfam_Dynein_heavy	HMMPfam_Dynein_heavy	-	no_start_codon
RRP8	23378	broad.mit.edu	36	11	6581246	6581246	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	6581246	6581246	G	T	SNP	RRP8	NM_015324	human	genbank	54_36p	-1	provisional	silent	c.63	p.I21	0	NULL	"HMMPfam_Methyltransf_8,superfamily_SSF53335"	-	no_errors
DCHS1	8642	broad.mit.edu	36	11	6603232	6603232	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6603232	6603232	G	T	SNP	DCHS1	NM_003737	human	genbank	54_36p	-1	reviewed	missense	c.6919	p.P2307T	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1"	-	no_errors
DCHS1	8642	broad.mit.edu	36	11	6609533	6609533	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6609533	6609533	G	T	SNP	DCHS1	NM_003737	human	genbank	54_36p	-1	reviewed	missense	c.3565	p.P1189T	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
DCHS1	8642	broad.mit.edu	36	11	6617809	6617809	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6617809	6617809	A	T	SNP	DCHS1	NM_003737	human	genbank	54_36p	-1	reviewed	missense	c.1612	p.Y538N	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
OR2AG2	338755	broad.mit.edu	36	11	6745955	6745955	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6745955	6745955	T	G	SNP	OR2AG2	NM_001004490	human	genbank	54_36p	-1	provisional	missense	c.810	p.Q270H	0.12	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR6A2	8590	broad.mit.edu	36	11	6772720	6772720	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6772720	6772720	G	A	SNP	OR6A2	NM_003696	human	genbank	54_36p	-1	provisional	missense	c.796	p.R266W	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR6A2	8590	broad.mit.edu	36	11	6773415	6773415	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	6773415	6773415	A	G	SNP	OR6A2	NM_003696	human	genbank	54_36p	-1	provisional	missense	c.101	p.L34P	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR10A5	144124	broad.mit.edu	36	11	6824073	6824073	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6824073	6824073	T	A	SNP	OR10A5	NM_178168	human	genbank	54_36p	1	provisional	missense	c.584	p.L195Q	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10A4	283297	broad.mit.edu	36	11	6854698	6854698	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	6854698	6854698	A	T	SNP	OR10A4	NM_207186	human	genbank	54_36p	1	provisional	missense	c.244	p.M82L	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZNF215	7762	broad.mit.edu	36	11	6920968	6920968	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	6920968	6920968	C	G	SNP	ZNF215	NM_013250	human	genbank	54_36p	1	validated	missense	c.562	p.L188V	0.89	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NLRP14	338323	broad.mit.edu	36	11	7021026	7021026	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	7021026	7021026	C	A	SNP	NLRP14	NM_176822	human	genbank	54_36p	1	reviewed	missense	c.1193	p.A398D	0	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047"	-	no_errors
NLRP14	338323	broad.mit.edu	36	11	7027589	7027589	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	7027589	7027589	A	T	SNP	NLRP14	NM_176822	human	genbank	54_36p	1	reviewed	silent	c.2235	p.G745	0.99	superfamily_SSF52047	"HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047"	-	no_errors
PPFIBP2	8495	broad.mit.edu	36	11	7627461	7627461	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	7627461	7627461	G	C	SNP	PPFIBP2	NM_003621	human	genbank	54_36p	1	validated	missense	c.2121	p.E707D	1	superfamily_SAM/Pointed domain	"HMMPfam_Integrase_DNA,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
OR5P2	120065	broad.mit.edu	36	11	7774747	7774747	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	7774747	7774747	C	T	SNP	OR5P2	NM_153444	human	genbank	54_36p	-1	provisional	missense	c.319	p.E107K	0.11	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5P2	120065	broad.mit.edu	36	11	7774842	7774842	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	7774842	7774842	G	T	SNP	OR5P2	NM_153444	human	genbank	54_36p	-1	provisional	missense	c.224	p.P75H	0.96	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
NLRP10	338322	broad.mit.edu	36	11	7941372	7941372	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	7941372	7941372	G	T	SNP	NLRP10	NM_176821	human	genbank	54_36p	-1	reviewed	missense	c.247	p.L83M	0.97	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN"	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT"	-	no_errors
NLRP10	338322	broad.mit.edu	36	11	7941477	7941477	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	7941477	7941477	C	T	SNP	NLRP10	NM_176821	human	genbank	54_36p	-1	reviewed	missense	c.142	p.E48K	0.94	"HMMPfam_PAAD_DAPIN,superfamily_DEATH_like"	"HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52540"	-	no_errors
RIC3	79608	broad.mit.edu	36	11	8088973	8088973	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	8088973	8088973	C	G	SNP	RIC3	NM_024557	human	genbank	54_36p	-1	validated	missense	c.955	p.A319P	0.87	NULL	NULL	-	no_errors
ST5	6764	broad.mit.edu	36	11	8674574	8674574	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	8674574	8674574	C	G	SNP	ST5	NM_005418	human	genbank	54_36p	-1	reviewed	missense	c.3268	p.E1090Q	1	NULL	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801"	-	no_errors
C11orf16	56673	broad.mit.edu	36	11	8907627	8907627	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	8907627	8907627	A	G	SNP	C11orf16	NM_020643	human	genbank	54_36p	-1	validated	missense	c.197	p.V66A	0	NULL	NULL	-	no_errors
SBF2	81846	broad.mit.edu	36	11	9767406	9767406	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	9767406	9767406	C	T	SNP	SBF2	NM_030962	human	genbank	54_36p	-1	reviewed	silent	c.4758	p.E1586	1	superfamily_(Phosphotyrosine protein) phosphatases II	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SBF2	81846	broad.mit.edu	36	11	9834647	9834647	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	9834647	9834647	T	G	SNP	SBF2	NM_030962	human	genbank	54_36p	-1	reviewed	missense	c.2297	p.N766T	1	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
SBF2	81846	broad.mit.edu	36	11	9834830	9834830	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	9834830	9834830	T	A	SNP	SBF2	NM_030962	human	genbank	54_36p	-1	reviewed	missense	c.2114	p.D705V	0.31	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
ADM	133	broad.mit.edu	36	11	10284120	10284120	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	10284120	10284120	C	A	SNP	ADM	NM_001124	human	genbank	54_36p	1	reviewed	silent	c.147	p.S49	0.62	HMMPfam_Adrenomedullin	HMMPfam_Adrenomedullin	-	no_errors
MRVI1	10335	broad.mit.edu	36	11	10587885	10587885	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	10587885	10587885	G	A	SNP	MRVI1	NM_001098579	human	genbank	54_36p	-1	reviewed	missense	c.1510	p.R504C	1	HMMPfam_MRVI1	HMMPfam_MRVI1	-	no_errors
CTR9	9646	broad.mit.edu	36	11	10756974	10756974	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	10756974	10756974	C	T	SNP	CTR9	NM_014633	human	genbank	54_36p	1	provisional	missense	c.3268	p.P1090S	0.91	NULL	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
EIF4G2	1982	broad.mit.edu	36	11	10777791	10777791	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	10777791	10777791	T	G	SNP	EIF4G2	ENST00000379653	human	ensembl	54_36p	-1	known	missense	c.354	p.E118D	1	NULL	"HMMPfam_MA3,superfamily_ARM repeat"	-	no_errors
DKK3	27122	broad.mit.edu	36	11	11942730	11942730	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	11942730	11942730	C	G	SNP	DKK3	NM_001018057	human	genbank	54_36p	-1	reviewed	missense	c.910	p.V304L	0	NULL	HMMPfam_Dickkopf_N	-	no_errors
MICAL2	9645	broad.mit.edu	36	11	12201551	12201551	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	12201551	12201551	C	T	SNP	MICAL2	NM_014632	human	genbank	54_36p	1	provisional	silent	c.1467	p.I489	1	superfamily_Calponin-homology domain CH-domain	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
MICAL2	9645	broad.mit.edu	36	11	12220835	12220835	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	12220835	12220835	G	C	SNP	MICAL2	NM_014632	human	genbank	54_36p	1	provisional	missense	c.2598	p.K866N	1	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
MICALCL	84953	broad.mit.edu	36	11	12271730	12271730	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	12271730	12271730	G	T	SNP	MICALCL	NM_032867	human	genbank	54_36p	1	validated	missense	c.176	p.S59I	0	NULL	NULL	-	no_errors
MICALCL	84953	broad.mit.edu	36	11	12272940	12272940	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	12272940	12272940	T	C	SNP	MICALCL	NM_032867	human	genbank	54_36p	1	validated	silent	c.1386	p.P462	0.03	NULL	NULL	-	no_errors
MICALCL	84953	broad.mit.edu	36	11	12272940	12272940	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	12272940	12272940	T	C	SNP	MICALCL	NM_032867	human	genbank	54_36p	1	validated	silent	c.1386	p.P462	0.03	NULL	NULL	-	no_errors
INSC	387755	broad.mit.edu	36	11	15090605	15090605	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	15090605	15090605	C	T	SNP	INSC	NM_001031853	human	genbank	54_36p	1	provisional	missense	c.14	p.P5L	0.34	NULL	"PatternScan_PA2_HIS,superfamily_ARM repeat,HMMSmart_SM00185"	-	no_errors
SOX6	55553	broad.mit.edu	36	11	15951143	15951143	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	15951143	15951143	T	C	SNP	SOX6	NM_033326	human	genbank	54_36p	-1	reviewed	missense	c.2215	p.T739A	1	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
PIK3C2A	5286	broad.mit.edu	36	11	17079488	17079488	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	17079488	17079488	A	C	SNP	PIK3C2A	NM_002645	human	genbank	54_36p	-1	validated	missense	c.3921	p.I1307M	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146"	###############################################################################################################################################################################################################################################################	-	no_errors
PIK3C2A	5286	broad.mit.edu	36	11	17114655	17114655	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	17114655	17114655	C	T	SNP	PIK3C2A	NM_002645	human	genbank	54_36p	-1	validated	missense	c.1798	p.V600I	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ABCC8	6833	broad.mit.edu	36	11	17375098	17375098	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	17375098	17375098	C	A	SNP	ABCC8	NM_000352	human	genbank	54_36p	-1	reviewed	missense	c.4060	p.D1354Y	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
MRGPRX3	117195	broad.mit.edu	36	11	18115893	18115893	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	18115893	18115893	G	T	SNP	MRGPRX3	NM_054031	human	genbank	54_36p	1	provisional	missense	c.568	p.V190F	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HPS5	11234	broad.mit.edu	36	11	18261972	18261972	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	18261972	18261972	C	T	SNP	HPS5	NM_181507	human	genbank	54_36p	-1	reviewed	missense	c.3004	p.A1002T	1	NULL	superfamily_WD40 repeat-like	-	no_errors
TMEM86A	144110	broad.mit.edu	36	11	18679776	18679776	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	18679776	18679776	G	T	SNP	TMEM86A	NM_153347	human	genbank	54_36p	1	provisional	missense	c.367	p.V123L	1	HMMPfam_YhhN	HMMPfam_YhhN	-	no_errors
IGSF22	283284	broad.mit.edu	36	11	18696217	18696217	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	18696217	18696217	C	G	SNP	IGSF22	NM_173588	human	genbank	54_36p	-1	validated	splice_site	c.811-1	e8-1	0.81	-	-	-	no_errors
PTPN5	84867	broad.mit.edu	36	11	18710749	18710749	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	18710749	18710749	G	A	SNP	PTPN5	NM_006906	human	genbank	54_36p	-1	validated	missense	c.1295	p.T432M	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
MRGPRX2	117194	broad.mit.edu	36	11	19034061	19034061	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	19034061	19034061	G	A	SNP	MRGPRX2	NM_054030	human	genbank	54_36p	-1	provisional	silent	c.465	p.A155	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
NAV2	89797	broad.mit.edu	36	11	19927130	19927130	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	19927130	19927130	T	A	SNP	NAV2	NM_182964	human	genbank	54_36p	1	validated	missense	c.2642	p.M881K	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
SLC6A5	9152	broad.mit.edu	36	11	20606139	20606139	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	20606139	20606139	T	C	SNP	SLC6A5	NM_004211	human	genbank	54_36p	1	validated	missense	c.1433	p.L478S	0.93	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2,PatternScan_ASP_GLU_RACEMASE_1"	-	no_errors
NELL1	4745	broad.mit.edu	36	11	20925491	20925491	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	20925491	20925491	C	A	SNP	NELL1	NM_006157	human	genbank	54_36p	1	reviewed	missense	c.1105	p.P369T	1	HMMSmart_SM00214	###############################################################################################################################################################################################################################################################	-	no_errors
NELL1	4745	broad.mit.edu	36	11	21091714	21091714	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	21091714	21091714	T	A	SNP	NELL1	NM_006157	human	genbank	54_36p	1	reviewed	missense	c.1304	p.I435N	1	"HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
ANO5	203859	broad.mit.edu	36	11	22250961	22250961	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	22250961	22250961	T	A	SNP	ANO5	NM_213599	human	genbank	54_36p	1	validated	silent	c.2085	p.L695	0.94	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
LUZP2	338645	broad.mit.edu	36	11	24954714	24954714	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	24954714	24954714	C	G	SNP	LUZP2	NM_001009909	human	genbank	54_36p	1	validated	missense	c.524	p.A175G	1	NULL	NULL	-	no_errors
ANO3	63982	broad.mit.edu	36	11	26638567	26638567	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	11	26638567	26638567	G	A	SNP	ANO3	NM_031418	human	genbank	54_36p	1	validated	silent	c.2946	p.*982	0.99	NULL	HMMPfam_DUF590	-	no_errors
LGR4	55366	broad.mit.edu	36	11	27346024	27346024	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	27346024	27346024	C	A	SNP	LGR4	NM_018490	human	genbank	54_36p	-1	validated	missense	c.2822	p.R941L	1	NULL	"PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
KIF18A	81930	broad.mit.edu	36	11	28001961	28001961	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	28001961	28001961	G	C	SNP	KIF18A	NM_031217	human	genbank	54_36p	-1	validated	missense	c.2517	p.N839K	0.24	NULL	"HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
KIF18A	81930	broad.mit.edu	36	11	28013557	28013557	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	28013557	28013557	G	A	SNP	KIF18A	NM_031217	human	genbank	54_36p	-1	validated	silent	c.2457	p.S819	1	NULL	"HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540"	-	no_errors
METT5D1	196074	broad.mit.edu	36	11	28091605	28091605	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	28091605	28091605	G	T	SNP	METT5D1	NM_152636	human	genbank	54_36p	1	validated	missense	c.148	p.D50Y	0	NULL	"superfamily_SSF53335,HMMPfam_Methyltransf_5,superfamily_SSF81799"	-	no_errors
METT5D1	196074	broad.mit.edu	36	11	28091635	28091635	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	28091635	28091635	T	G	SNP	METT5D1	NM_152636	human	genbank	54_36p	1	validated	missense	c.178	p.S60A	0	NULL	"HMMPfam_Methyltransf_5,superfamily_SSF53335,superfamily_SSF81799"	-	no_errors
KCNA4	3739	broad.mit.edu	36	11	29990600	29990600	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	29990600	29990600	G	C	SNP	KCNA4	NM_002233	human	genbank	54_36p	-1	reviewed	missense	c.202	p.R68G	0.88	HMMPfam_K_channel_TID	"HMMPfam_K_channel_TID,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
FSHB	2488	broad.mit.edu	36	11	30210097	30210097	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	30210097	30210097	C	A	SNP	FSHB	NM_000510	human	genbank	54_36p	1	reviewed	silent	c.72	p.T24	1	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501"	"HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_GLYCO_HORMONE_BETA_2"	-	no_errors
PAX6	5080	broad.mit.edu	36	11	31772162	31772162	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	31772162	31772162	T	C	SNP	PAX6	NM_001604	human	genbank	54_36p	-1	reviewed	silent	c.801	p.R267	1	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	"HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
PAX6	5080	broad.mit.edu	36	11	31772909	31772909	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	31772909	31772909	C	A	SNP	PAX6	NM_001604	human	genbank	54_36p	-1	reviewed	missense	c.569	p.G190V	1	NULL	"HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_PAX,HMMSmart_PAX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1"	-	no_errors
EIF3M	10480	broad.mit.edu	36	11	32565148	32565148	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	32565148	32565148	T	G	SNP	EIF3M	NM_006360	human	genbank	54_36p	1	provisional	silent	c.57	p.R19	0.9	NULL	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_Winged helix DNA-binding domain"	-	no_errors
CCDC73	493860	broad.mit.edu	36	11	32592523	32592523	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	32592523	32592523	A	C	SNP	CCDC73	NM_001008391	human	genbank	54_36p	-1	validated	silent	c.1917	p.P639	0	NULL	NULL	-	no_errors
QSER1	79832	broad.mit.edu	36	11	32912214	32912214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	32912214	32912214	G	A	SNP	QSER1	NM_001076786	human	genbank	54_36p	1	provisional	missense	c.2447	p.S816N	1	NULL	NULL	-	no_errors
QSER1	79832	broad.mit.edu	36	11	32913305	32913305	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	32913305	32913305	G	C	SNP	QSER1	NM_001076786	human	genbank	54_36p	1	provisional	missense	c.3538	p.G1180R	1	NULL	NULL	-	no_errors
DEPDC7	91614	broad.mit.edu	36	11	33011542	33011542	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	33011542	33011542	C	A	SNP	DEPDC7	NM_001077242	human	genbank	54_36p	1	validated	missense	c.1501	p.H501N	1	NULL	"superfamily_Winged helix DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	-	no_errors
C11orf41	25758	broad.mit.edu	36	11	33520608	33520608	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	33520608	33520608	A	T	SNP	C11orf41	NM_012194	human	genbank	54_36p	1	validated	missense	c.32	p.D11V	0	NULL	NULL	-	no_errors
C11orf41	25758	broad.mit.edu	36	11	33523082	33523082	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	33523082	33523082	C	T	SNP	C11orf41	NM_012194	human	genbank	54_36p	1	validated	silent	c.2094	p.A698	0	NULL	NULL	-	no_errors
C11orf41	25758	broad.mit.edu	36	11	33546309	33546309	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	33546309	33546309	G	A	SNP	C11orf41	NM_012194	human	genbank	54_36p	1	validated	missense	c.3317	p.R1106Q	1	NULL	NULL	-	no_errors
TRIM44	54765	broad.mit.edu	36	11	35663409	35663410	+	Missense_Mutation	DNP	CG	CG	TT	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	35663409	35663410	CG	TT	DNP	TRIM44	NM_017583	human	genbank	54_36p	1	reviewed	missense	c.696_697	p.A233S	0.971:0.995	NULL	"HMMPfam_zf-B_box,HMMSmart_BBOX,superfamily_SSF57845"	-	no_errors
TRAF6	7189	broad.mit.edu	36	11	36468092	36468092	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	36468092	36468092	C	T	SNP	TRAF6	NM_004620	human	genbank	54_36p	-1	reviewed	missense	c.1441	p.A481T	0.52	"superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH"	"superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_Traf_like,HMMPfam_zf-TRAF,HMMSmart_MATH,HMMPfam_MATH"	-	no_errors
TRAF6	7189	broad.mit.edu	36	11	36468137	36468137	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	36468137	36468137	G	A	SNP	TRAF6	NM_004620	human	genbank	54_36p	-1	reviewed	missense	c.1396	p.R466W	1	"HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like"	"HMMPfam_zf-TRAF,HMMSmart_RING,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
RAG1	5896	broad.mit.edu	36	11	36554336	36554336	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	36554336	36554336	A	C	SNP	RAG1	NM_000448	human	genbank	54_36p	1	reviewed	missense	c.2906	p.K969T	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-RAG1"	-	no_errors
LRRC4C	57689	broad.mit.edu	36	11	40093534	40093534	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	40093534	40093534	C	T	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	silent	c.885	p.R295	1	superfamily_L domain-like	"superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	-	no_errors
LRRC4C	57689	broad.mit.edu	36	11	40094374	40094374	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	40094374	40094374	A	C	SNP	LRRC4C	NM_020929	human	genbank	54_36p	-1	validated	silent	c.45	p.G15	1	superfamily_L domain-like	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
API5	8539	broad.mit.edu	36	11	43298958	43298958	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	43298958	43298958	A	C	SNP	API5	NM_006595	human	genbank	54_36p	1	validated	missense	c.243	p.Q81H	1	"HMMPfam_API5,superfamily_ARM repeat"	"HMMPfam_API5,superfamily_ARM repeat"	-	no_errors
TTC17	55761	broad.mit.edu	36	11	43375487	43375487	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	43375487	43375487	T	A	SNP	TTC17	NM_018259	human	genbank	54_36p	1	provisional	missense	c.788	p.I263N	1	superfamily_SSF48452	"superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR"	-	no_errors
TTC17	55761	broad.mit.edu	36	11	43383975	43383975	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	43383975	43383975	C	T	SNP	TTC17	NM_018259	human	genbank	54_36p	1	provisional	silent	c.1659	p.S553	1	superfamily_SSF48452	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
TTC17	55761	broad.mit.edu	36	11	43385634	43385634	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	43385634	43385634	G	C	SNP	TTC17	NM_018259	human	genbank	54_36p	1	provisional	missense	c.1995	p.L665F	1	superfamily_SSF48452	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
TTC17	55761	broad.mit.edu	36	11	43429369	43429369	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	43429369	43429369	G	A	SNP	TTC17	NM_018259	human	genbank	54_36p	1	provisional	missense	c.3008	p.R1003Q	1	superfamily_SSF48452	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452"	-	no_errors
ACCSL	390110	broad.mit.edu	36	11	44026460	44026460	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	44026460	44026460	G	A	SNP	ACCSL	NM_001031854	human	genbank	54_36p	1	validated	missense	c.298	p.D100N	0.01	NULL	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	-	no_errors
ACCSL	390110	broad.mit.edu	36	11	44031588	44031588	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	44031588	44031588	C	A	SNP	ACCSL	NM_001031854	human	genbank	54_36p	1	validated	silent	c.1005	p.I335	1	"HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases"	"HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases"	-	no_errors
ACCSL	390110	broad.mit.edu	36	11	44034203	44034203	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	44034203	44034203	A	T	SNP	ACCSL	NM_001031854	human	genbank	54_36p	1	validated	missense	c.1177	p.T393S	0.37	"HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases"	"HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases"	-	no_errors
ACCSL	390110	broad.mit.edu	36	11	44038023	44038023	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	44038023	44038023	T	G	SNP	ACCSL	NM_001031854	human	genbank	54_36p	1	validated	missense	c.1684	p.L562V	0	NULL	"HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases"	-	no_errors
ACCS	84680	broad.mit.edu	36	11	44055977	44055977	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	44055977	44055977	G	C	SNP	ACCS	NM_032592	human	genbank	54_36p	1	validated	missense	c.661	p.G221R	0.66	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2"	"PatternScan_AA_TRANSFER_CLASS_1,superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2"	-	no_errors
CD82	3732	broad.mit.edu	36	11	44583231	44583231	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	44583231	44583231	G	A	SNP	CD82	NM_002231	human	genbank	54_36p	1	reviewed	missense	c.184	p.V62M	0.99	HMMPfam_Tetraspannin	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
SLC35C1	55343	broad.mit.edu	36	11	45784160	45784160	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	45784160	45784160	T	G	SNP	SLC35C1	NM_018389	human	genbank	54_36p	1	reviewed	missense	c.232	p.F78V	1	NULL	"superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_TPT"	-	no_errors
MAPK8IP1	9479	broad.mit.edu	36	11	45882247	45882247	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	45882247	45882247	A	G	SNP	MAPK8IP1	NM_005456	human	genbank	54_36p	1	reviewed	missense	c.1625	p.Y542C	1	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF50729"	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID"	-	no_errors
C11orf94	143678	broad.mit.edu	36	11	45884996	45884996	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	45884996	45884996	C	A	SNP	LOC143678	NM_001080446	human	genbank	54_36p	-1	validated	missense	c.175	p.D59Y	1	NULL	NULL	-	no_errors
GYLTL1B	120071	broad.mit.edu	36	11	45905458	45905458	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	45905458	45905458	G	T	SNP	GYLTL1B	NM_152312	human	genbank	54_36p	1	validated	missense	c.1342	p.A448S	1	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	-	no_errors
CREB3L1	90993	broad.mit.edu	36	11	46291044	46291044	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	46291044	46291044	C	T	SNP	CREB3L1	ENST00000288400	human	ensembl	54_36p	1	known	silent	c.1029	p.N343	1	"HMMPfam_bZIP_1,HMMSmart_SM00338"	"superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
DGKZ	8525	broad.mit.edu	36	11	46344423	46344423	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	46344423	46344423	C	T	SNP	DGKZ	NM_001105540	human	genbank	54_36p	1	reviewed	missense	c.41	p.P14L	0.02	NULL	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
F2	2147	broad.mit.edu	36	11	46706902	46706902	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	46706902	46706902	C	T	SNP	F2	NM_000506	human	genbank	54_36p	1	reviewed	missense	c.1411	p.P471S	0.98	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP4	4038	broad.mit.edu	36	11	46847186	46847186	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	46847186	46847186	T	C	SNP	LRP4	NM_002334	human	genbank	54_36p	-1	validated	missense	c.4766	p.N1589S	1	"superfamily_YWTD domain,HMMSmart_SM00135"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP4	4038	broad.mit.edu	36	11	46849744	46849744	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	46849744	46849744	C	T	SNP	LRP4	NM_002334	human	genbank	54_36p	-1	validated	missense	c.4600	p.A1534T	1	"HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain"	###############################################################################################################################################################################################################################################################	-	no_errors
ARFGAP2	84364	broad.mit.edu	36	11	47144488	47144488	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	47144488	47144488	C	G	SNP	ARFGAP2	NM_032389	human	genbank	54_36p	-1	provisional	silent	c.1452	p.L484	1	NULL	"superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap"	-	no_errors
ARFGAP2	84364	broad.mit.edu	36	11	47153380	47153380	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47153380	47153380	G	A	SNP	ARFGAP2	NM_032389	human	genbank	54_36p	-1	provisional	nonsense	c.325	p.R109*	1	"HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP"	"HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP"	-	no_errors
DDB2	1643	broad.mit.edu	36	11	47213528	47213528	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	47213528	47213528	A	C	SNP	DDB2	NM_000107	human	genbank	54_36p	1	reviewed	missense	c.1012	p.T338P	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
NR1H3	10062	broad.mit.edu	36	11	47239545	47239545	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	47239545	47239545	G	A	SNP	NR1H3	NM_005693	human	genbank	54_36p	1	validated	missense	c.677	p.R226Q	0.85	superfamily_Nuclear receptor ligand-binding domain	###############################################################################################################################################################################################################################################################	-	no_errors
MADD	8567	broad.mit.edu	36	11	47254216	47254219	+	Frame_Shift_Del	DEL	CTTC	-	CTTC	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	CTTC	CTTC	-	-	CTTC	CTTC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	47254216	47254219	CTTC	-	DEL	MADD	NM_003682	human	genbank	54_36p	1	reviewed	frame_shift_del	c.850_853	p.L284fs	1.000:1.000:0.965:1.000	"HMMPfam_DENN,HMMSmart_SM00799"	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN"	"(deletion:cds_exon[47254026,47254329])"	no_errors
MADD	8567	broad.mit.edu	36	11	47289922	47289922	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47289922	47289922	G	C	SNP	MADD	NM_003682	human	genbank	54_36p	1	reviewed	missense	c.4222	p.V1408L	1	NULL	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN"	-	no_errors
MYBPC3	4607	broad.mit.edu	36	11	47310321	47310321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47310321	47310321	C	T	SNP	MYBPC3	NM_000256	human	genbank	54_36p	-1	reviewed	missense	c.3692	p.S1231N	1	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2"	-	no_errors
MYBPC3	4607	broad.mit.edu	36	11	47310986	47310986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47310986	47310986	C	T	SNP	MYBPC3	NM_000256	human	genbank	54_36p	-1	reviewed	missense	c.3445	p.D1149N	0.94	superfamily_FN_III-like	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
SPI1	6688	broad.mit.edu	36	11	47333408	47333408	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	47333408	47333408	G	A	SNP	SPI1	NM_001080547	human	genbank	54_36p	-1	reviewed	silent	c.762	p.S254	1	"HMMPfam_Ets,superfamily_Winged helix DNA-binding domain,HMMSmart_SM00413"	"HMMPfam_Ets,superfamily_Winged helix DNA-binding domain,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
RAPSN	5913	broad.mit.edu	36	11	47419742	47419742	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47419742	47419742	G	C	SNP	RAPSN	NM_005055	human	genbank	54_36p	-1	reviewed	missense	c.909	p.D303E	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"HMMPfam_Rapsyn_N,PatternScan_43_KD_POSTSYNAPTIC,superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RAPSN	5913	broad.mit.edu	36	11	47419999	47419999	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	47419999	47419999	G	A	SNP	RAPSN	NM_005055	human	genbank	54_36p	-1	reviewed	silent	c.741	p.L247	1	"HMMSmart_SM00028,superfamily_TPR-like"	"HMMPfam_TPR_1,HMMSmart_SM00184,PatternScan_43_KD_POSTSYNAPTIC,HMMPfam_zf-C3HC4,HMMPfam_Rapsyn_N,HMMSmart_SM00028,superfamily_TPR-like,superfamily_RING/U-box"	-	no_errors
CELF1	10658	broad.mit.edu	36	11	47457007	47457007	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	47457007	47457007	C	A	SNP	CUGBP1	NM_001025596	human	genbank	54_36p	-1	reviewed	missense	c.761	p.G254V	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
AGBL2	79841	broad.mit.edu	36	11	47664083	47664083	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47664083	47664083	G	T	SNP	AGBL2	NM_024783	human	genbank	54_36p	-1	validated	missense	c.1726	p.R576S	0.09	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	"superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	-	no_errors
FNBP4	23360	broad.mit.edu	36	11	47702858	47702858	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	47702858	47702858	A	G	SNP	FNBP4	NM_015308	human	genbank	54_36p	-1	validated	missense	c.2057	p.L686P	1	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1"	-	no_errors
FNBP4	23360	broad.mit.edu	36	11	47712212	47712212	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47712212	47712212	A	C	SNP	FNBP4	NM_015308	human	genbank	54_36p	-1	validated	missense	c.1627	p.F543V	1	NULL	"HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain"	-	no_errors
NUP160	23279	broad.mit.edu	36	11	47770961	47770961	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	47770961	47770961	T	C	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.3403	p.I1135V	1	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
NUP160	23279	broad.mit.edu	36	11	47826390	47826390	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47826390	47826390	G	A	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	silent	c.159	p.R53	0.99	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
NUP160	23279	broad.mit.edu	36	11	47826395	47826395	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	47826395	47826395	C	G	SNP	NUP160	NM_015231	human	genbank	54_36p	-1	validated	missense	c.154	p.E52Q	0.6	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
PTPRJ	5795	broad.mit.edu	36	11	48103233	48103233	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	11	48103233	48103233	G	A	SNP	PTPRJ	NM_002843	human	genbank	54_36p	1	reviewed	missense	c.1012	p.G338S	0	HMMSmart_FN3	"HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
OR4B1	119765	broad.mit.edu	36	11	48195608	48195608	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	48195608	48195608	G	C	SNP	OR4B1	NM_001005470	human	genbank	54_36p	1	provisional	missense	c.671	p.R224T	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR4X1	390113	broad.mit.edu	36	11	48242166	48242166	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	48242166	48242166	T	G	SNP	OR4X1	NM_001004726	human	genbank	54_36p	1	provisional	missense	c.178	p.F60V	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4A47	403253	broad.mit.edu	36	11	48467462	48467462	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	48467462	48467462	C	T	SNP	OR4A47	NM_001005512	human	genbank	54_36p	1	validated	missense	c.542	p.P181L	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR4C13	283092	broad.mit.edu	36	11	49930659	49930659	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	49930659	49930659	A	G	SNP	OR4C13	NM_001001955	human	genbank	54_36p	1	provisional	missense	c.109	p.M37V	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR4C13	283092	broad.mit.edu	36	11	49930899	49930899	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	49930899	49930899	G	T	SNP	OR4C13	NM_001001955	human	genbank	54_36p	1	provisional	missense	c.349	p.A117S	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR4C12	283093	broad.mit.edu	36	11	49960046	49960046	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	49960046	49960046	T	G	SNP	OR4C12	NM_001005270	human	genbank	54_36p	-1	provisional	missense	c.568	p.T190P	0.9	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR4A5	81318	broad.mit.edu	36	11	51268246	51268246	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	51268246	51268246	G	C	SNP	OR4A5	NM_001005272	human	genbank	54_36p	-1	provisional	silent	c.726	p.T242	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,PatternScan_LECTIN_LEGUME_ALPHA,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4C46	119749	broad.mit.edu	36	11	51372532	51372532	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	51372532	51372532	T	A	SNP	OR4C46	NM_001004703	human	genbank	54_36p	1	provisional	silent	c.675	p.T225	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR4C46	119749	broad.mit.edu	36	11	51372631	51372631	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	51372631	51372631	A	T	SNP	OR4C46	NM_001004703	human	genbank	54_36p	1	provisional	missense	c.774	p.R258S	0.02	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR4A15	81328	broad.mit.edu	36	11	54892040	54892040	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	54892040	54892040	C	A	SNP	OR4A15	NM_001005275	human	genbank	54_36p	1	provisional	missense	c.105	p.N35K	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4C15	81309	broad.mit.edu	36	11	55079253	55079253	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55079253	55079253	G	C	SNP	OR4C15	NM_001001920	human	genbank	54_36p	1	provisional	missense	c.895	p.V299L	0.03	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,PatternScan_LECTIN_LEGUME_ALPHA,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4S2	219431	broad.mit.edu	36	11	55175024	55175024	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	55175024	55175024	A	T	SNP	OR4S2	NM_001004059	human	genbank	54_36p	1	validated	missense	c.69	p.K23N	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4S2	219431	broad.mit.edu	36	11	55175361	55175361	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55175361	55175361	C	T	SNP	OR4S2	NM_001004059	human	genbank	54_36p	1	validated	missense	c.406	p.R136W	0	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR5D13	390142	broad.mit.edu	36	11	55297497	55297497	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55297497	55297497	C	A	SNP	OR5D13	NM_001001967	human	genbank	54_36p	1	provisional	missense	c.8	p.A3E	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5D14	219436	broad.mit.edu	36	11	55320009	55320009	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55320009	55320009	T	C	SNP	OR5D14	NM_001004735	human	genbank	54_36p	1	provisional	silent	c.402	p.Y134	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5L1	219437	broad.mit.edu	36	11	55335632	55335632	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55335632	55335632	G	A	SNP	OR5L1	NM_001004738	human	genbank	54_36p	1	provisional	silent	c.114	p.T38	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5L1	219437	broad.mit.edu	36	11	55336359	55336359	+	Missense_Mutation	SNP	G	G	C	rs61735738	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55336359	55336359	G	C	SNP	OR5L1	NM_001004738	human	genbank	54_36p	1	provisional	missense	c.841	p.V281L	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5L2	26338	broad.mit.edu	36	11	55351473	55351473	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55351473	55351473	T	C	SNP	OR5L2	NM_001004739	human	genbank	54_36p	1	provisional	missense	c.203	p.F68S	0.11	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5D16	390144	broad.mit.edu	36	11	55363156	55363156	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55363156	55363156	C	T	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.353	p.A118V	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5D16	390144	broad.mit.edu	36	11	55363540	55363540	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	55363540	55363540	A	T	SNP	OR5D16	NM_001005496	human	genbank	54_36p	1	provisional	missense	c.737	p.H246L	0.9	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5W2	390148	broad.mit.edu	36	11	55437854	55437854	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55437854	55437854	G	A	SNP	OR5W2	NM_001001960	human	genbank	54_36p	-1	provisional	missense	c.781	p.R261W	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10AG1	282770	broad.mit.edu	36	11	55492348	55492348	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	55492348	55492348	A	G	SNP	OR10AG1	NM_001005491	human	genbank	54_36p	-1	provisional	silent	c.168	p.N56	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5F1	338674	broad.mit.edu	36	11	55518467	55518467	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	55518467	55518467	C	G	SNP	OR5F1	NM_003697	human	genbank	54_36p	-1	provisional	missense	c.211	p.V71L	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5F1	338674	broad.mit.edu	36	11	55518619	55518619	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	55518619	55518619	G	A	SNP	OR5F1	NM_003697	human	genbank	54_36p	-1	provisional	missense	c.59	p.T20M	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5AS1	219447	broad.mit.edu	36	11	55555019	55555019	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55555019	55555019	T	C	SNP	OR5AS1	NM_001001921	human	genbank	54_36p	1	provisional	silent	c.549	p.P183	0.18	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8H3	390152	broad.mit.edu	36	11	55646913	55646913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55646913	55646913	G	A	SNP	OR8H3	NM_001005201	human	genbank	54_36p	1	provisional	missense	c.489	p.M163I	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8K5	219453	broad.mit.edu	36	11	55683584	55683584	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55683584	55683584	G	T	SNP	OR8K5	NM_001004058	human	genbank	54_36p	-1	validated	silent	c.786	p.P262	0.27	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5J2	282775	broad.mit.edu	36	11	55701170	55701170	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55701170	55701170	C	G	SNP	OR5J2	NM_001005492	human	genbank	54_36p	1	provisional	silent	c.501	p.S167	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5T2	219464	broad.mit.edu	36	11	55756168	55756168	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55756168	55756168	G	T	SNP	OR5T2	NM_001004746	human	genbank	54_36p	-1	provisional	missense	c.1070	p.T357N	0	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5T1	390155	broad.mit.edu	36	11	55800656	55800656	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55800656	55800656	C	T	SNP	OR5T1	NM_001004745	human	genbank	54_36p	1	provisional	silent	c.966	p.F322	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8H1	219469	broad.mit.edu	36	11	55814446	55814446	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55814446	55814446	G	T	SNP	OR8H1	NM_001005199	human	genbank	54_36p	-1	provisional	silent	c.669	p.T223	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8K3	219473	broad.mit.edu	36	11	55842418	55842418	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55842418	55842418	C	A	SNP	OR8K3	NM_001005202	human	genbank	54_36p	1	provisional	silent	c.60	p.I20	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR8K3	219473	broad.mit.edu	36	11	55843218	55843218	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	55843218	55843218	T	G	SNP	OR8K3	NM_001005202	human	genbank	54_36p	1	provisional	missense	c.860	p.L287W	0.78	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8K1	390157	broad.mit.edu	36	11	55870397	55870397	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55870397	55870397	T	C	SNP	OR8K1	NM_001002907	human	genbank	54_36p	1	provisional	missense	c.307	p.Y103H	0.92	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8J1	219477	broad.mit.edu	36	11	55884914	55884914	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55884914	55884914	A	T	SNP	OR8J1	NM_001005205	human	genbank	54_36p	1	provisional	missense	c.616	p.N206Y	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5R1	219479	broad.mit.edu	36	11	55941589	55941589	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55941589	55941589	C	A	SNP	OR5R1	NM_001004744	human	genbank	54_36p	-1	provisional	missense	c.696	p.Q232H	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR5M3	219482	broad.mit.edu	36	11	55994055	55994055	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	55994055	55994055	G	A	SNP	OR5M3	NM_001004742	human	genbank	54_36p	-1	provisional	silent	c.495	p.Y165	0.47	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M11	219487	broad.mit.edu	36	11	56066963	56066963	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	56066963	56066963	G	T	SNP	OR5M11	NM_001005245	human	genbank	54_36p	-1	provisional	missense	c.347	p.A116E	0.02	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M11	219487	broad.mit.edu	36	11	56067065	56067065	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	56067065	56067065	G	A	SNP	OR5M11	NM_001005245	human	genbank	54_36p	-1	provisional	missense	c.245	p.S82L	0.06	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5M11	219487	broad.mit.edu	36	11	56067236	56067236	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	56067236	56067236	G	C	SNP	OR5M11	NM_001005245	human	genbank	54_36p	-1	provisional	missense	c.74	p.S25C	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5M10	390167	broad.mit.edu	36	11	56101185	56101185	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	56101185	56101185	T	A	SNP	OR5M10	NM_001004741	human	genbank	54_36p	-1	provisional	missense	c.589	p.M197L	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5M10	390167	broad.mit.edu	36	11	56101670	56101670	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	56101670	56101670	T	G	SNP	OR5M10	NM_001004741	human	genbank	54_36p	-1	provisional	missense	c.104	p.Y35S	0.48	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR5AP2	338675	broad.mit.edu	36	11	56165952	56165952	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	56165952	56165952	G	C	SNP	OR5AP2	NM_001002925	human	genbank	54_36p	-1	provisional	missense	c.540	p.I180M	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5AK2	390181	broad.mit.edu	36	11	56513363	56513363	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	56513363	56513363	T	C	SNP	OR5AK2	NM_001005323	human	genbank	54_36p	1	provisional	silent	c.399	p.T133	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
LRRC55	219527	broad.mit.edu	36	11	56706342	56706342	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	56706342	56706342	G	T	SNP	LRRC55	NM_001005210	human	genbank	54_36p	1	provisional	missense	c.399	p.E133D	1	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082"	-	no_errors
LRRC55	219527	broad.mit.edu	36	11	56706465	56706465	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	56706465	56706465	C	T	SNP	LRRC55	NM_001005210	human	genbank	54_36p	1	provisional	silent	c.522	p.D174	0.91	"HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	-	no_errors
TNKS1BP1	85456	broad.mit.edu	36	11	56833997	56833997	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	56833997	56833997	C	A	SNP	TNKS1BP1	NM_033396	human	genbank	54_36p	-1	validated	missense	c.2764	p.D922Y	0.23	NULL	NULL	-	no_errors
TNKS1BP1	85456	broad.mit.edu	36	11	56837572	56837572	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	56837572	56837572	C	T	SNP	TNKS1BP1	NM_033396	human	genbank	54_36p	-1	validated	missense	c.1166	p.R389Q	0	NULL	NULL	-	no_errors
SSRP1	6749	broad.mit.edu	36	11	56852464	56852464	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	56852464	56852464	G	A	SNP	SSRP1	NM_003146	human	genbank	54_36p	-1	reviewed	silent	c.1494	p.N498	0.97	NULL	"HMMPfam_SSrecog,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
SLC43A3	29015	broad.mit.edu	36	11	56933999	56933999	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	56933999	56933999	G	C	SNP	SLC43A3	NM_014096	human	genbank	54_36p	-1	validated	missense	c.1232	p.A411G	1	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC43A1	8501	broad.mit.edu	36	11	57025059	57025059	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	57025059	57025059	G	A	SNP	SLC43A1	NM_003627	human	genbank	54_36p	-1	provisional	silent	c.366	p.A122	1	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
UBE2L6	9246	broad.mit.edu	36	11	57084412	57084412	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	57084412	57084412	G	A	SNP	UBE2L6	NM_004223	human	genbank	54_36p	-1	reviewed	silent	c.97	p.L33	1	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con"	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1"	-	no_errors
MED19	219541	broad.mit.edu	36	11	57228832	57228832	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	57228832	57228832	T	A	SNP	MED19	NM_153450	human	genbank	54_36p	-1	provisional	missense	c.506	p.Q169L	1	HMMPfam_Med19	HMMPfam_Med19	-	no_errors
OR6Q1	219952	broad.mit.edu	36	11	57555327	57555327	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	57555327	57555327	C	A	SNP	OR6Q1	NM_001005186	human	genbank	54_36p	1	validated	silent	c.327	p.T109	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR9Q2	219957	broad.mit.edu	36	11	57714696	57714696	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	57714696	57714696	G	A	SNP	OR9Q2	NM_001005283	human	genbank	54_36p	1	provisional	missense	c.158	p.R53H	0.02	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR1S2	219958	broad.mit.edu	36	11	57727663	57727663	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	57727663	57727663	G	A	SNP	OR1S2	NM_001004459	human	genbank	54_36p	-1	provisional	silent	c.567	p.H189	0.98	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR1S2	219958	broad.mit.edu	36	11	57727866	57727866	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	57727866	57727866	C	T	SNP	OR1S2	NM_001004459	human	genbank	54_36p	-1	provisional	missense	c.364	p.V122I	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR10W1	81341	broad.mit.edu	36	11	57791742	57791742	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	57791742	57791742	G	A	SNP	OR10W1	NM_207374	human	genbank	54_36p	-1	provisional	silent	c.165	p.G55	0.02	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5B3	441608	broad.mit.edu	36	11	57927449	57927449	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	57927449	57927449	T	C	SNP	OR5B3	NM_001005469	human	genbank	54_36p	-1	provisional	missense	c.10	p.K4E	0.08	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5B2	390190	broad.mit.edu	36	11	57947077	57947077	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	57947077	57947077	C	A	SNP	OR5B2	NM_001005566	human	genbank	54_36p	-1	provisional	missense	c.234	p.K78N	0.09	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LPXN	9404	broad.mit.edu	36	11	58073901	58073901	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	58073901	58073901	T	C	SNP	LPXN	NM_004811	human	genbank	54_36p	-1	reviewed	missense	c.676	p.M226V	1	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
ZFP91	80829	broad.mit.edu	36	11	58141539	58141539	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	58141539	58141539	G	C	SNP	ZFP91	NM_053023	human	genbank	54_36p	1	reviewed	missense	c.1497	p.L499F	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
FAM111B	374393	broad.mit.edu	36	11	58649831	58649831	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	58649831	58649831	G	A	SNP	FAM111B	NM_198947	human	genbank	54_36p	1	validated	nonsense	c.1685	p.W562*	0	superfamily_Trypsin-like serine proteases	superfamily_Trypsin-like serine proteases	-	no_errors
OR5AN1	390195	broad.mit.edu	36	11	58888817	58888817	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	58888817	58888817	A	T	SNP	OR5AN1	NM_001004729	human	genbank	54_36p	1	provisional	missense	c.310	p.I104F	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5A1	219982	broad.mit.edu	36	11	58967856	58967856	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	58967856	58967856	G	A	SNP	OR5A1	NM_001004728	human	genbank	54_36p	1	provisional	silent	c.639	p.S213	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR5A1	219982	broad.mit.edu	36	11	58967926	58967926	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	58967926	58967926	C	T	SNP	OR5A1	NM_001004728	human	genbank	54_36p	1	provisional	nonsense	c.709	p.R237*	0.13	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR4D10	390197	broad.mit.edu	36	11	59001784	59001784	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	59001784	59001784	T	C	SNP	OR4D10	NM_001004705	human	genbank	54_36p	1	provisional	silent	c.306	p.F102	0.72	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OSBP	5007	broad.mit.edu	36	11	59118142	59118142	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	59118142	59118142	T	C	SNP	OSBP	NM_002556	human	genbank	54_36p	-1	reviewed	missense	c.1474	p.S492G	1	HMMPfam_Oxysterol_BP	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
GIF	2694	broad.mit.edu	36	11	59369478	59369478	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	59369478	59369478	G	A	SNP	GIF	NM_005142	human	genbank	54_36p	-1	reviewed	silent	c.25	p.L9	0	HMMPfam_Cobalamin_bind	"HMMPfam_Cobalamin_bind,PatternScan_COBALAMIN_BINDING"	-	no_errors
TCN1	6947	broad.mit.edu	36	11	59386668	59386668	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	59386668	59386668	C	A	SNP	TCN1	NM_001062	human	genbank	54_36p	-1	reviewed	missense	c.363	p.K121N	0	HMMPfam_Cobalamin_bind	"HMMPfam_Cobalamin_bind,PatternScan_ABC_TRANSPORTER_1,PatternScan_COBALAMIN_BINDING"	-	no_errors
PLAC1L	219990	broad.mit.edu	36	11	59571087	59571087	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	59571087	59571087	T	A	SNP	PLAC1L	NM_173801	human	genbank	54_36p	1	provisional	missense	c.442	p.L148I	0.46	NULL	NULL	-	no_errors
MS4A3	932	broad.mit.edu	36	11	59591034	59591034	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	59591034	59591034	C	A	SNP	MS4A3	NM_006138	human	genbank	54_36p	1	reviewed	missense	c.386	p.A129D	0.06	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MS4A6A	64231	broad.mit.edu	36	11	59702353	59702353	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	59702353	59702353	C	T	SNP	MS4A6A	NM_152852	human	genbank	54_36p	-1	reviewed	missense	c.295	p.G99S	0.95	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MS4A5	64232	broad.mit.edu	36	11	59957856	59957856	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	59957856	59957856	G	A	SNP	MS4A5	NM_023945	human	genbank	54_36p	1	reviewed	missense	c.382	p.A128T	0.66	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MS4A1	931	broad.mit.edu	36	11	59987094	59987094	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	59987094	59987094	G	T	SNP	MS4A1	NM_021950	human	genbank	54_36p	1	reviewed	missense	c.203	p.G68V	0.72	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
MS4A8B	83661	broad.mit.edu	36	11	60227519	60227519	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	60227519	60227519	C	G	SNP	MS4A8B	NM_031457	human	genbank	54_36p	1	reviewed	nonsense	c.312	p.Y104*	0.45	HMMPfam_CD20	HMMPfam_CD20	-	no_errors
PRPF19	27339	broad.mit.edu	36	11	60425396	60425396	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	60425396	60425396	C	A	SNP	PRPF19	NM_014502	human	genbank	54_36p	-1	validated	nonsense	c.589	p.E197*	1	superfamily_WD40_like	"HMMSmart_Ubox,superfamily_SSF57850,HMMPfam_U-box,HMMPfam_Prp19,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
TMEM109	79073	broad.mit.edu	36	11	60443814	60443814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	60443814	60443814	C	T	SNP	TMEM109	NM_024092	human	genbank	54_36p	1	validated	missense	c.73	p.L25F	0.52	NULL	NULL	-	no_errors
TMEM132A	54972	broad.mit.edu	36	11	60457758	60457758	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	60457758	60457758	G	T	SNP	TMEM132A	NM_017870	human	genbank	54_36p	1	reviewed	missense	c.1528	p.V510F	1	NULL	NULL	-	no_errors
TMEM132A	54972	broad.mit.edu	36	11	60460030	60460030	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	60460030	60460030	C	G	SNP	TMEM132A	NM_017870	human	genbank	54_36p	1	reviewed	missense	c.2150	p.P717R	0.87	NULL	NULL	-	no_errors
CD5	921	broad.mit.edu	36	11	60645770	60645770	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	60645770	60645770	C	A	SNP	CD5	NM_014207	human	genbank	54_36p	1	validated	missense	c.917	p.A306D	0	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	-	no_errors
VWCE	220001	broad.mit.edu	36	11	60793047	60793047	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	60793047	60793047	C	T	SNP	VWCE	NM_152718	human	genbank	54_36p	-1	validated	missense	c.1805	p.C602Y	1	"HMMSmart_SM00214,PatternScan_VWFC_1"	###############################################################################################################################################################################################################################################################	-	no_errors
SDHAF2	54949	broad.mit.edu	36	11	60961684	60961684	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	60961684	60961684	G	T	SNP	C11orf79	NM_017841	human	genbank	54_36p	1	predicted	silent	c.48	p.L16	0	NULL	"superfamily_DUF339,HMMPfam_DUF339"	-	no_errors
SYT7	9066	broad.mit.edu	36	11	61047909	61047909	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	61047909	61047909	C	G	SNP	SYT7	NM_004200	human	genbank	54_36p	-1	validated	silent	c.873	p.R291	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SYT7	9066	broad.mit.edu	36	11	61057099	61057099	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	61057099	61057099	G	A	SNP	SYT7	NM_004200	human	genbank	54_36p	-1	validated	missense	c.289	p.R97W	1	NULL	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
FADS2	9415	broad.mit.edu	36	11	61361848	61361848	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	61361848	61361848	C	G	SNP	FADS2	NM_004265	human	genbank	54_36p	1	reviewed	missense	c.230	p.P77R	0.07	"superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5"	"superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_FA_desaturase"	-	no_errors
FADS3	3995	broad.mit.edu	36	11	61400413	61400413	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	61400413	61400413	G	T	SNP	FADS3	NM_021727	human	genbank	54_36p	-1	reviewed	missense	c.1074	p.S358R	0.4	HMMPfam_FA_desaturase	"PatternScan_CYTOCHROME_B5_1,superfamily_Cyt_B5,HMMPfam_Cyt-b5,HMMPfam_FA_desaturase"	-	no_errors
FTH1	2495	broad.mit.edu	36	11	61488897	61488897	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	61488897	61488897	T	C	SNP	FTH1	NM_002032	human	genbank	54_36p	-1	reviewed	missense	c.430	p.K144E	1	"superfamily_Ferritin-like,HMMPfam_Ferritin,PatternScan_FERRITIN_2"	"superfamily_Ferritin-like,HMMPfam_Ferritin,PatternScan_FERRITIN_1,PatternScan_FERRITIN_2"	-	no_errors
ASRGL1	80150	broad.mit.edu	36	11	61881104	61881104	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	61881104	61881104	C	G	SNP	ASRGL1	NM_001083926	human	genbank	54_36p	1	validated	missense	c.403	p.P135A	0.1	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Asparaginase_2"	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Asparaginase_2"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62041330	62041330	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62041330	62041330	A	G	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.17135	p.I5712T	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62043091	62043091	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62043091	62043091	G	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.15374	p.S5125C	0	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62044940	62044940	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62044940	62044940	T	G	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.13525	p.M4509L	0.99	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62045707	62045707	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	62045707	62045707	T	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.12758	p.K4253R	1	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62047742	62047742	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	62047742	62047742	G	A	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.10723	p.P3575S	0.67	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62050498	62050498	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62050498	62050498	G	A	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.7967	p.P2656L	0.91	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62055266	62055266	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62055266	62055266	T	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.3199	p.M1067V	0.94	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
AHNAK	79026	broad.mit.edu	36	11	62057585	62057585	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	62057585	62057585	G	T	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.880	p.P294T	0.26	NULL	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC"	-	no_errors
MTA2	9219	broad.mit.edu	36	11	62122408	62122408	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62122408	62122408	C	A	SNP	MTA2	NM_004739	human	genbank	54_36p	-1	reviewed	missense	c.339	p.E113D	1	"HMMPfam_BAH,HMMSmart_BAH"	"PatternScan_GATA_ZN_FINGER_1,HMMPfam_BAH,HMMSmart_BAH,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_SSF57716,HMMSmart_ZnF_GATA,HMMPfam_GATA"	-	no_errors
B3GAT3	26229	broad.mit.edu	36	11	62141083	62141083	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	62141083	62141083	G	A	SNP	B3GAT3	NM_012200	human	genbank	54_36p	-1	reviewed	silent	c.570	p.V190	0.96	"superfamily_SSF53448,HMMPfam_Glyco_transf_43"	"superfamily_SSF53448,HMMPfam_Glyco_transf_43"	-	no_errors
B3GAT3	26229	broad.mit.edu	36	11	62141167	62141167	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	62141167	62141167	G	C	SNP	B3GAT3	NM_012200	human	genbank	54_36p	-1	reviewed	missense	c.486	p.N162K	1	"HMMPfam_Glyco_transf_43,superfamily_SSF53448"	"HMMPfam_Glyco_transf_43,superfamily_SSF53448"	-	no_errors
GANAB	23193	broad.mit.edu	36	11	62154461	62154461	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	62154461	62154461	C	G	SNP	GANAB	NM_198335	human	genbank	54_36p	-1	validated	silent	c.1545	p.R515	0.99	HMMPfam_Glyco_hydro_31	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2"	-	no_errors
GANAB	23193	broad.mit.edu	36	11	62155158	62155158	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62155158	62155158	G	C	SNP	GANAB	NM_198335	human	genbank	54_36p	-1	validated	nonsense	c.1136	p.S379*	1	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2"	-	no_errors
INTS5	80789	broad.mit.edu	36	11	62172743	62172743	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62172743	62172743	A	G	SNP	INTS5	NM_030628	human	genbank	54_36p	-1	provisional	missense	c.1385	p.L462P	0.95	NULL	NULL	-	no_errors
INTS5	80789	broad.mit.edu	36	11	62173408	62173408	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62173408	62173408	G	A	SNP	INTS5	NM_030628	human	genbank	54_36p	-1	provisional	silent	c.720	p.S240	1	NULL	NULL	-	no_errors
ZBTB3	79842	broad.mit.edu	36	11	62278032	62278032	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	62278032	62278032	C	A	SNP	ZBTB3	NM_024784	human	genbank	54_36p	-1	validated	nonsense	c.79	p.G27*	0	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
TAF6L	10629	broad.mit.edu	36	11	62302026	62302026	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62302026	62302026	G	A	SNP	TAF6L	NM_006473	human	genbank	54_36p	1	reviewed	missense	c.235	p.A79T	1	NULL	"superfamily_Histone-fold,HMMPfam_TAF,HMMSmart_SM00803,HMMPfam_DUF1546"	-	no_errors
TAF6L	10629	broad.mit.edu	36	11	62310742	62310742	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62310742	62310742	C	T	SNP	TAF6L	NM_006473	human	genbank	54_36p	1	reviewed	missense	c.1267	p.P423S	0	NULL	"HMMPfam_TAF,HMMSmart_SM00803,superfamily_Histone-fold,HMMPfam_DUF1546"	-	no_errors
NXF1	10482	broad.mit.edu	36	11	62327610	62327610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	62327610	62327610	T	C	SNP	NXF1	NM_006362	human	genbank	54_36p	-1	reviewed	missense	c.226	p.T76A	0.02	NULL	"superfamily_SSF54928,HMMPfam_Tap-RNA_bind,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRcap,superfamily_SSF54427,HMMPfam_NTF2,superfamily_UBA_like,HMMSmart_TAP_C,HMMPfam_TAP_C"	-	no_errors
STX5	6811	broad.mit.edu	36	11	62351640	62351640	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	62351640	62351640	G	A	SNP	STX5	NM_003164	human	genbank	54_36p	-1	validated	nonsense	c.265	p.R89*	0.94	superfamily_t-snare proteins	"superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
SLC22A25	387601	broad.mit.edu	36	11	62753477	62753477	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62753477	62753477	A	G	SNP	SLC22A25	NM_199352	human	genbank	54_36p	-1	validated	missense	c.224	p.I75T	0.95	NULL	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	-	no_errors
SLC22A10	387775	broad.mit.edu	36	11	62814454	62814454	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62814454	62814454	T	A	SNP	SLC22A10	NM_001039752	human	genbank	54_36p	1	validated	missense	c.241	p.S81T	0.1	NULL	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
HRASLS5	117245	broad.mit.edu	36	11	62990168	62990168	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	62990168	62990168	C	T	SNP	HRASLS5	NM_054108	human	genbank	54_36p	-1	provisional	missense	c.737	p.R246Q	1	HMMPfam_NC	HMMPfam_NC	-	no_errors
LGALS12	85329	broad.mit.edu	36	11	63032877	63032877	+	Silent	SNP	C	C	A	rs12289952	by-hapmap	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	63032877	63032877	C	A	SNP	LGALS12	NM_033101	human	genbank	54_36p	1	validated	silent	c.276	p.I92	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin"	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin"	-	no_errors
ATL3	25923	broad.mit.edu	36	11	63183284	63183284	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	63183284	63183284	G	A	SNP	ATL3	NM_015459	human	genbank	54_36p	-1	validated	silent	c.63	p.S21	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain"	-	no_errors
RCOR2	283248	broad.mit.edu	36	11	63438132	63438132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	63438132	63438132	C	T	SNP	RCOR2	NM_173587	human	genbank	54_36p	-1	provisional	missense	c.761	p.R254Q	0.99	NULL	"HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	-	no_errors
RCOR2	283248	broad.mit.edu	36	11	63438490	63438510	+	In_Frame_Del	DEL	CCAGCCGCCGGGCCTGTCTGT	-	CCAGCCGCCGGGCCTGTCTGT	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	CCAGCCGCCGGGCCTGTCTGT	CCAGCCGCCGGGCCTGTCTGT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	63438490	63438510	CCAGCCGCCGGGCCTGTCTGT	-	DEL	RCOR2	NM_173587	human	genbank	54_36p	-1	provisional	in_frame_del	c.580_560	p.DRQARRL187in_frame_del	0.934:0.948:1.000:1.000:0.999:1.000:1.000:0.997:0.998:0.969:0.675:0.999:1.000:1.000:1.000:1.000:0.992:1.000:1.000:1.000:1.000	NULL	"HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	"(deletion:cds_exon[63438465,63438589])"	no_errors
STIP1	10963	broad.mit.edu	36	11	63718643	63718643	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	63718643	63718643	C	T	SNP	STIP1	NM_006819	human	genbank	54_36p	1	validated	nonsense	c.478	p.R160*	0.33	"superfamily_SSF48452,HMMSmart_STI1"	"HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,HMMSmart_STI1"	-	no_errors
SLC22A12	116085	broad.mit.edu	36	11	64115975	64115975	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64115975	64115975	G	A	SNP	SLC22A12	NM_144585	human	genbank	54_36p	1	reviewed	missense	c.371	p.R124H	0.91	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
NRXN2	9379	broad.mit.edu	36	11	64131861	64131862	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	64131861	64131862	-	G	INS	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.4522_4521	p.T1507fs	1.000:0.993	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294"	-	no_errors
NRXN2	9379	broad.mit.edu	36	11	64172824	64172824	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	64172824	64172824	C	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	missense	c.3241	p.D1081N	1	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294"	-	no_errors
NRXN2	9379	broad.mit.edu	36	11	64184880	64184880	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64184880	64184880	C	A	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	silent	c.2106	p.G702	0.83	"HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases"	"HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
NRXN2	9379	broad.mit.edu	36	11	64184952	64184952	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64184952	64184952	C	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	silent	c.2034	p.G678	0.99	superfamily_Concanavalin A-like lectins/glucanases	"HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
NRXN2	9379	broad.mit.edu	36	11	64209946	64209946	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64209946	64209946	G	A	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	silent	c.900	p.Y300	1	superfamily_Concanavalin A-like lectins/glucanases	"HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
RASGRP2	10235	broad.mit.edu	36	11	64264122	64264123	+	Missense_Mutation	DNP	TC	TC	GA	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64264122	64264123	TC	GA	DNP	RASGRP2	NM_001098670	human	genbank	54_36p	-1	reviewed	missense	c.461_460	p.E154S	1.000:1.000	"superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147"	"HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1"	-	no_errors
PYGM	5837	broad.mit.edu	36	11	64270790	64270790	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	64270790	64270790	G	C	SNP	PYGM	NM_005609	human	genbank	54_36p	-1	validated	missense	c.2446	p.R816G	1	"superfamily_SSF53756,HMMPfam_Phosphorylase"	"superfamily_SSF53756,HMMPfam_Phosphorylase,PatternScan_PHOSPHORYLASE"	-	no_errors
PYGM	5837	broad.mit.edu	36	11	64277171	64277171	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64277171	64277171	G	A	SNP	PYGM	NM_005609	human	genbank	54_36p	-1	validated	missense	c.1468	p.R490W	1	"HMMPfam_Phosphorylase,superfamily_SSF53756"	"HMMPfam_Phosphorylase,PatternScan_PHOSPHORYLASE,superfamily_SSF53756"	-	no_errors
SF1	7536	broad.mit.edu	36	11	64293596	64293596	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	64293596	64293596	C	T	SNP	SF1	NM_004630	human	genbank	54_36p	-1	validated	missense	c.541	p.G181R	1	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1"	"HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
MAP4K2	5871	broad.mit.edu	36	11	64313672	64313672	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	64313672	64313672	T	C	SNP	MAP4K2	NM_004579	human	genbank	54_36p	-1	reviewed	silent	c.2376	p.R792	1	"HMMSmart_CNH,HMMPfam_CNH"	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_CNH,HMMPfam_CNH"	-	no_errors
CDC42BPG	55561	broad.mit.edu	36	11	64358982	64358982	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64358982	64358982	T	C	SNP	CDC42BPG	NM_017525	human	genbank	54_36p	-1	validated	missense	c.2090	p.Y697C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CDC42BPG	55561	broad.mit.edu	36	11	64365872	64365872	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64365872	64365872	C	G	SNP	CDC42BPG	NM_017525	human	genbank	54_36p	-1	validated	missense	c.241	p.A81P	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
ATG2A	23130	broad.mit.edu	36	11	64431868	64431870	+	Missense_Mutation	TNP	CTG	CTG	TCA	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	CTG	CTG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64431868	64431870	CTG	TCA	TNP	ATG2A	NM_015104	human	genbank	54_36p	-1	provisional	missense	c.2433_2435	p.S812D	0.831:0.848:0.857	NULL	"PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C,PatternScan_ADH_ZINC"	-	no_errors
NAALADL1	10004	broad.mit.edu	36	11	64569328	64569328	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64569328	64569328	A	G	SNP	NAALADL1	NM_005468	human	genbank	54_36p	-1	validated	silent	c.2214	p.A738	0.89	superfamily_Transferrin receptor ectodomain C-terminal domain	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_PA,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M28,superfamily_Transferrin receptor ectodomain C-terminal domain,HMMPfam_TFR_dimer"	-	no_errors
ZFPL1	7542	broad.mit.edu	36	11	64612082	64612082	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	64612082	64612082	C	T	SNP	ZFPL1	NM_006782	human	genbank	54_36p	1	validated	missense	c.853	p.R285C	0.99	NULL	"PatternScan_ZF_RING_1,HMMSmart_RING"	-	no_errors
MRPL49	740	broad.mit.edu	36	11	64649815	64649815	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	64649815	64649815	G	T	SNP	MRPL49	NM_004927	human	genbank	54_36p	1	reviewed	silent	c.396	p.L132	1	HMMPfam_Img2	HMMPfam_Img2	-	no_errors
CAPN1	823	broad.mit.edu	36	11	64707243	64707243	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	64707243	64707243	G	A	SNP	CAPN1	NM_005186	human	genbank	54_36p	1	reviewed	silent	c.336	p.L112	1	"superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS"	###############################################################################################################################################################################################################################################################	-	no_errors
DPF2	5977	broad.mit.edu	36	11	64865046	64865046	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	64865046	64865046	C	A	SNP	DPF2	NM_006268	human	genbank	54_36p	1	reviewed	missense	c.227	p.A76D	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
SSSCA1	10534	broad.mit.edu	36	11	65094555	65094555	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65094555	65094555	C	A	SNP	SSSCA1	NM_006396	human	genbank	54_36p	1	provisional	missense	c.17	p.A6D	0.91	NULL	HMMPfam_Auto_anti-p27	-	no_errors
EHBP1L1	254102	broad.mit.edu	36	11	65105943	65105943	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65105943	65105943	A	G	SNP	EHBP1L1	NM_001099409	human	genbank	54_36p	1	validated	silent	c.1224	p.S408	0	NULL	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH"	-	no_errors
DKFZp761E198	91056	broad.mit.edu	36	11	65302963	65302963	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65302963	65302963	A	C	SNP	DKFZp761E198	NM_138368	human	genbank	54_36p	-1	validated	missense	c.1406	p.V469G	0.01	NULL	NULL	-	no_errors
EFEMP2	30008	broad.mit.edu	36	11	65391929	65391929	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65391929	65391929	C	T	SNP	EFEMP2	NM_016938	human	genbank	54_36p	-1	reviewed	silent	c.1149	p.S383	0.72	NULL	"PatternScan_EGF_1,superfamily_SSF57196,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_EGF"	-	no_errors
FOSL1	8061	broad.mit.edu	36	11	65421052	65421052	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65421052	65421052	T	C	SNP	FOSL1	NM_005438	human	genbank	54_36p	-1	reviewed	missense	c.101	p.K34R	1	NULL	"HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC"	-	no_errors
CST6	1474	broad.mit.edu	36	11	65536897	65536897	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65536897	65536897	C	T	SNP	CST6	NM_001323	human	genbank	54_36p	1	reviewed	silent	c.265	p.L89	1	"HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN"	"HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN"	-	no_errors
CATSPER1	117144	broad.mit.edu	36	11	65545150	65545150	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65545150	65545150	T	G	SNP	CATSPER1	NM_053054	human	genbank	54_36p	-1	reviewed	missense	c.1774	p.T592P	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
GAL3ST3	89792	broad.mit.edu	36	11	65567636	65567636	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65567636	65567636	G	A	SNP	GAL3ST3	NM_033036	human	genbank	54_36p	-1	reviewed	missense	c.214	p.H72Y	1	HMMPfam_Gal-3-0_sulfotr	HMMPfam_Gal-3-0_sulfotr	-	no_errors
SF3B2	10992	broad.mit.edu	36	11	65584674	65584674	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65584674	65584674	C	T	SNP	SF3B2	NM_006842	human	genbank	54_36p	1	reviewed	missense	c.1675	p.P559S	1	HMMPfam_DUF382	"HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_DUF382,HMMSmart_SM00581,HMMPfam_PSP"	-	no_errors
PACS1	55690	broad.mit.edu	36	11	65594709	65594709	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65594709	65594709	C	G	SNP	PACS1	NM_018026	human	genbank	54_36p	1	reviewed	missense	c.176	p.S59C	0.99	NULL	HMMPfam_Pacs-1	-	no_errors
PACS1	55690	broad.mit.edu	36	11	65735253	65735253	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65735253	65735253	C	T	SNP	PACS1	NM_018026	human	genbank	54_36p	1	reviewed	missense	c.607	p.R203W	1	NULL	HMMPfam_Pacs-1	-	no_errors
PACS1	55690	broad.mit.edu	36	11	65740818	65740830	+	Splice_Site	DEL	CAAGGGTGAGCCT	-	CAAGGGTGAGCCT	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	CAAGGGTGAGCCT	CAAGGGTGAGCCT	-	-	CAAGGGTGAGCCT	CAAGGGTGAGCCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	65740818	65740830	CAAGGGTGAGCCT	-	DEL	PACS1	NM_018026	human	genbank	54_36p	1	reviewed	splice_site_del	c.974_978	p.R326fs	0.985:0.240:0.305:0.991:0.999	NULL	HMMPfam_Pacs-1	"(deletion:cds_exon[65740742,65740822], intron[65740823,65743792])"	no_errors
PACS1	55690	broad.mit.edu	36	11	65757079	65757079	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65757079	65757079	G	A	SNP	PACS1	NM_018026	human	genbank	54_36p	1	reviewed	missense	c.1804	p.V602M	0.97	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors
PACS1	55690	broad.mit.edu	36	11	65757102	65757102	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65757102	65757102	G	C	SNP	PACS1	NM_018026	human	genbank	54_36p	1	reviewed	silent	c.1827	p.R609	0.96	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors
RAB1B	81876	broad.mit.edu	36	11	65800133	65800133	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65800133	65800133	G	A	SNP	RAB1B	NM_030981	human	genbank	54_36p	1	validated	missense	c.454	p.A152T	1	"HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
CD248	57124	broad.mit.edu	36	11	65839126	65839126	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65839126	65839126	C	A	SNP	CD248	NM_020404	human	genbank	54_36p	-1	validated	missense	c.1949	p.G650V	0	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL"	-	no_errors
RIN1	9610	broad.mit.edu	36	11	65857419	65857419	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65857419	65857419	G	C	SNP	RIN1	NM_004292	human	genbank	54_36p	-1	validated	silent	c.1761	p.A587	1	"superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9"	"superfamily_SH2 domain,HMMSmart_SM00252,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314"	-	no_errors
SLC29A2	3177	broad.mit.edu	36	11	65887526	65887526	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	65887526	65887526	G	T	SNP	SLC29A2	NM_001532	human	genbank	54_36p	-1	validated	missense	c.1328	p.S443Y	1	HMMPfam_Nucleoside_tran	HMMPfam_Nucleoside_tran	-	no_errors
MRPL11	65003	broad.mit.edu	36	11	65961438	65961438	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65961438	65961438	A	G	SNP	MRPL11	NM_016050	human	genbank	54_36p	-1	reviewed	missense	c.272	p.L91P	1	"HMMSmart_SM00649,superfamily_Ribosomal protein L11 C-terminal domain,HMMPfam_Ribosomal_L11"	"HMMPfam_Ribosomal_L11_N,superfamily_Ribosomal protein L11 N-terminal domain,HMMSmart_SM00649,superfamily_Ribosomal protein L11 C-terminal domain,HMMPfam_Ribosomal_L11"	-	no_errors
PELI3	246330	broad.mit.edu	36	11	65999994	65999994	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	65999994	65999994	G	C	SNP	PELI3	NM_145065	human	genbank	54_36p	1	validated	missense	c.1190	p.W397S	1	HMMPfam_Pellino	HMMPfam_Pellino	-	no_errors
BBS1	582	broad.mit.edu	36	11	66055715	66055715	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	66055715	66055715	G	C	SNP	BBS1	NM_024649	human	genbank	54_36p	1	reviewed	missense	c.1621	p.V541L	1	NULL	NULL	-	no_errors
ACTN3	89	broad.mit.edu	36	11	66083371	66083374	+	Frame_Shift_Del	DEL	GAGC	-	GAGC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GAGC	GAGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	66083371	66083374	GAGC	-	DEL	ACTN3	NM_001104	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1365_1368	p.S456fs	1.000:1.000:1.000:1.000	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[66083283,66083433])"	pseudogene
ACTN3	89	broad.mit.edu	36	11	66087148	66087148	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66087148	66087148	C	A	SNP	ACTN3	NM_001104	human	genbank	54_36p	1	reviewed	missense	c.2614	p.R872S	1	"superfamily_EF-hand,HMMPfam_efhand_Ca_insen"	###############################################################################################################################################################################################################################################################	-	pseudogene
CCDC87	55231	broad.mit.edu	36	11	66114997	66115015	+	Frame_Shift_Del	DEL	GACCACAGTTGTTCCAGAT	-	GACCACAGTTGTTCCAGAT	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	GACCACAGTTGTTCCAGAT	GACCACAGTTGTTCCAGAT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66114997	66115015	GACCACAGTTGTTCCAGAT	-	DEL	CCDC87	NM_018219	human	genbank	54_36p	-1	validated	frame_shift_del	c.2066_2048	p.H683fs	0.048:0.077:0.307:0.332:0.320:0.204:0.187:0.045:0.013:0.007:0.039:0.096:0.184:0.195:0.194:0.286:0.295:0.254:0.369	NULL	NULL	"(deletion:cds_exon[66114513,66117062])"	no_errors
SPTBN2	6712	broad.mit.edu	36	11	66223550	66223550	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66223550	66223550	G	A	SNP	SPTBN2	NM_006946	human	genbank	54_36p	-1	validated	missense	c.3679	p.R1227W	1	"HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
C11orf80	79703	broad.mit.edu	36	11	66338022	66338022	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66338022	66338022	T	C	SNP	C11orf80	NM_024650	human	genbank	54_36p	1	validated	silent	c.684	p.H228	0.94	NULL	NULL	-	no_errors
ANKRD13D	338692	broad.mit.edu	36	11	66825128	66825128	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	66825128	66825128	G	A	SNP	ANKRD13D	NM_207354	human	genbank	54_36p	1	provisional	missense	c.904	p.A302T	1	NULL	"HMMPfam_UIM,HMMSmart_SM00726"	-	no_errors
SSH3	54961	broad.mit.edu	36	11	66831645	66831645	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	66831645	66831645	G	T	SNP	SSH3	NM_017857	human	genbank	54_36p	1	provisional	missense	c.652	p.G218C	0.59	NULL	"HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
SSH3	54961	broad.mit.edu	36	11	66831958	66831958	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66831958	66831958	G	T	SNP	SSH3	NM_017857	human	genbank	54_36p	1	provisional	missense	c.857	p.S286I	0.42	HMMPfam_DEK_C	"HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
SSH3	54961	broad.mit.edu	36	11	66835861	66835861	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66835861	66835861	C	T	SNP	SSH3	NM_017857	human	genbank	54_36p	1	provisional	missense	c.1907	p.S636F	0.03	NULL	"HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
TBC1D10C	374403	broad.mit.edu	36	11	66929688	66929688	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66929688	66929688	G	C	SNP	TBC1D10C	NM_198517	human	genbank	54_36p	1	provisional	missense	c.407	p.G136A	1	"superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC"	"superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC"	-	no_errors
RPS6KB2	6199	broad.mit.edu	36	11	66957080	66957080	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	66957080	66957080	T	C	SNP	RPS6KB2	NM_003952	human	genbank	54_36p	1	reviewed	missense	c.698	p.I233T	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
CORO1B	57175	broad.mit.edu	36	11	66966579	66966579	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	66966579	66966579	G	A	SNP	CORO1B	NM_001018070	human	genbank	54_36p	-1	validated	missense	c.97	p.R33C	1	"HMMPfam_DUF1899,superfamily_WD40 repeat-like"	"HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900"	-	no_errors
GPR152	390212	broad.mit.edu	36	11	66975882	66975882	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66975882	66975882	A	T	SNP	GPR152	NM_206997	human	genbank	54_36p	-1	provisional	missense	c.890	p.M297K	0.99	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
CABP4	57010	broad.mit.edu	36	11	66982457	66982457	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	66982457	66982457	C	T	SNP	CABP4	NM_145200	human	genbank	54_36p	1	validated	silent	c.691	p.L231	1	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
PITPNM1	9600	broad.mit.edu	36	11	67022229	67022230	+	Missense_Mutation	DNP	GC	GC	TG	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67022229	67022230	GC	TG	DNP	PITPNM1	NM_004910	human	genbank	54_36p	-1	validated	missense	c.1625_1624	p.A542H	1.000:1.000	NULL	"HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
GSTP1	2950	broad.mit.edu	36	11	67110474	67110474	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	67110474	67110474	G	T	SNP	GSTP1	NM_000852	human	genbank	54_36p	1	reviewed	silent	c.483	p.L161	0.94	"superfamily_GST_C_like,HMMPfam_GST_C"	"superfamily_Thiordxn-like_fd,HMMPfam_GST_N,superfamily_GST_C_like,HMMPfam_GST_C"	-	no_errors
TBX10	347853	broad.mit.edu	36	11	67158235	67158235	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67158235	67158235	C	A	SNP	TBX10	NM_005995	human	genbank	54_36p	-1	provisional	splice_site	c.549+1	e4+1	1	-	-	-	no_errors
TCIRG1	10312	broad.mit.edu	36	11	67569077	67569077	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67569077	67569077	G	T	SNP	TCIRG1	NM_006019	human	genbank	54_36p	1	reviewed	missense	c.1097	p.R366L	0.73	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
TCIRG1	10312	broad.mit.edu	36	11	67573234	67573234	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67573234	67573234	T	C	SNP	TCIRG1	NM_006019	human	genbank	54_36p	1	reviewed	missense	c.1784	p.V595A	0	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
C11orf24	53838	broad.mit.edu	36	11	67786710	67786711	+	Missense_Mutation	DNP	AC	AC	GA	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67786710	67786711	AC	GA	DNP	C11orf24	NM_022338	human	genbank	54_36p	-1	validated	missense	c.329_328	p.V110S	0.002:0.000	NULL	PatternScan_ALDOKETO_REDUCTASE_3	-	no_errors
LRP5	4041	broad.mit.edu	36	11	67910716	67910716	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67910716	67910716	C	G	SNP	LRP5	NM_002335	human	genbank	54_36p	1	validated	missense	c.1372	p.L458V	1	"superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135"	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
LRP5	4041	broad.mit.edu	36	11	67934074	67934074	+	Silent	SNP	C	C	T	rs35298380	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67934074	67934074	C	T	SNP	LRP5	NM_002335	human	genbank	54_36p	1	validated	silent	c.2208	p.D736	1	"HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain"	"HMMPfam_Ldl_recept_b,HMMSmart_SM00135,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin,superfamily_YWTD domain"	-	no_errors
LRP5	4041	broad.mit.edu	36	11	67949190	67949190	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	67949190	67949190	A	G	SNP	LRP5	NM_002335	human	genbank	54_36p	1	validated	missense	c.3281	p.E1094G	1	"HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain"	"HMMPfam_Ldl_recept_b,HMMSmart_SM00135,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin,superfamily_YWTD domain"	-	no_errors
MTL5	9633	broad.mit.edu	36	11	68234924	68234924	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	68234924	68234924	T	A	SNP	MTL5	NM_004923	human	genbank	54_36p	-1	reviewed	missense	c.1328	p.H443L	0	NULL	HMMPfam_CXC	-	no_errors
CPT1A	1374	broad.mit.edu	36	11	68304710	68304710	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	68304710	68304710	C	A	SNP	CPT1A	NM_001876	human	genbank	54_36p	-1	reviewed	missense	c.1432	p.A478S	1	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2"	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2"	-	no_errors
CPT1A	1374	broad.mit.edu	36	11	68308909	68308909	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	68308909	68308909	C	T	SNP	CPT1A	NM_001876	human	genbank	54_36p	-1	reviewed	silent	c.1113	p.S371	0.39	"HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases"	"HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases"	-	no_errors
CPT1A	1374	broad.mit.edu	36	11	68309007	68309007	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	68309007	68309007	G	A	SNP	CPT1A	NM_001876	human	genbank	54_36p	-1	reviewed	nonsense	c.1015	p.R339*	0.94	"HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases"	"HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases"	-	no_errors
IGHMBP2	3508	broad.mit.edu	36	11	68457489	68457490	+	Missense_Mutation	DNP	TC	TC	GT	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	68457489	68457490	TC	GT	DNP	IGHMBP2	NM_002180	human	genbank	54_36p	1	reviewed	missense	c.1382_1383	p.L461R	1.000:0.992	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMSmart_SM00382,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H,HMMSmart_SM00154"	-	no_errors
FGF3	2248	broad.mit.edu	36	11	69334464	69334464	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	69334464	69334464	G	A	SNP	FGF3	NM_005247	human	genbank	54_36p	-1	reviewed	silent	c.510	p.R170	1	"superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF"	"superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
ANO1	55107	broad.mit.edu	36	11	69649920	69649920	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	69649920	69649920	A	T	SNP	ANO1	NM_018043	human	genbank	54_36p	1	validated	silent	c.1068	p.G356	1	NULL	HMMPfam_DUF590	-	no_errors
ANO1	55107	broad.mit.edu	36	11	69655709	69655709	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	69655709	69655709	G	A	SNP	ANO1	NM_018043	human	genbank	54_36p	1	validated	missense	c.1134	p.M378I	1	NULL	HMMPfam_DUF590	-	no_errors
ANO1	55107	broad.mit.edu	36	11	69706267	69706267	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	69706267	69706267	C	A	SNP	ANO1	NM_018043	human	genbank	54_36p	1	validated	silent	c.2337	p.I779	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
FADD	8772	broad.mit.edu	36	11	69729942	69729942	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	11	69729942	69729942	G	C	SNP	FADD	NM_003824	human	genbank	54_36p	1	reviewed	missense	c.342	p.R114S	0.36	"superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	"superfamily_DEATH_like,HMMSmart_DED,HMMPfam_DED,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
CTTN	2017	broad.mit.edu	36	11	69946724	69946724	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	69946724	69946724	G	C	SNP	CTTN	NM_005231	human	genbank	54_36p	1	reviewed	missense	c.932	p.G311A	1	HMMPfam_HS1_rep	"HMMPfam_HS1_rep,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
SHANK2	22941	broad.mit.edu	36	11	70026568	70026568	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	70026568	70026568	G	C	SNP	SHANK2	NM_012309	human	genbank	54_36p	-1	reviewed	missense	c.414	p.D138E	1	NULL	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
NADSYN1	55191	broad.mit.edu	36	11	70879624	70879624	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	70879624	70879624	T	A	SNP	NADSYN1	NM_018161	human	genbank	54_36p	1	validated	missense	c.1648	p.F550I	1	"superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_NAD_synthase"	"superfamily_Carbon-nitrogen hydrolase,HMMPfam_CN_hydrolase,superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_NAD_synthase"	-	no_errors
KRTAP5-7	440050	broad.mit.edu	36	11	70916252	70916252	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	70916252	70916252	C	T	SNP	KRTAP5-7	NM_001012503	human	genbank	54_36p	1	validated	silent	c.258	p.G86	0.97	NULL	"PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1"	-	no_errors
NUMA1	4926	broad.mit.edu	36	11	71402374	71402374	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	71402374	71402374	C	T	SNP	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	missense	c.3823	p.E1275K	1	NULL	superfamily_Prefoldin	-	no_errors
NUMA1	4926	broad.mit.edu	36	11	71403242	71403242	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	71403242	71403242	C	A	SNP	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	silent	c.2955	p.R985	0	NULL	superfamily_Prefoldin	-	no_errors
NUMA1	4926	broad.mit.edu	36	11	71404395	71404395	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	71404395	71404395	G	A	SNP	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	missense	c.1802	p.A601V	0	NULL	superfamily_Prefoldin	-	no_errors
NUMA1	4926	broad.mit.edu	36	11	71404873	71404873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	71404873	71404873	C	T	SNP	NUMA1	NM_006185	human	genbank	54_36p	-1	validated	missense	c.1324	p.E442K	0.2	NULL	superfamily_Prefoldin	-	no_errors
FOLR2	2350	broad.mit.edu	36	11	71610286	71610286	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	11	71610286	71610286	C	A	SNP	FOLR2	NM_000803	human	genbank	54_36p	1	reviewed	missense	c.651	p.S217R	0.28	HMMPfam_Folate_rec	HMMPfam_Folate_rec	-	no_errors
CLPB	81570	broad.mit.edu	36	11	71823138	71823138	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	71823138	71823138	T	C	SNP	CLPB	NM_030813	human	genbank	54_36p	-1	provisional	missense	c.29	p.K10R	0.91	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_2,HMMPfam_ClpB_D2-small"	-	no_errors
PDE2A	5138	broad.mit.edu	36	11	71974286	71974286	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	71974286	71974286	C	A	SNP	PDE2A	NM_002599	human	genbank	54_36p	-1	validated	splice_site	c.1183-1	e15-1	1	-	-	-	no_errors
ARHGEF17	89798	broad.mit.edu	36	11	72753257	72753257	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	72753257	72753257	A	G	SNP	ARHGEF17	NM_014786	human	genbank	54_36p	1	validated	silent	c.5514	p.R1838	0.95	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase"	-	no_errors
PAAF1	80227	broad.mit.edu	36	11	73289042	73289042	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	73289042	73289042	T	A	SNP	PAAF1	NM_025155	human	genbank	54_36p	1	provisional	missense	c.461	p.M154K	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
C2CD3	26005	broad.mit.edu	36	11	73511754	73511754	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	73511754	73511754	A	G	SNP	C2CD3	NM_015531	human	genbank	54_36p	-1	validated	missense	c.1292	p.V431A	0.96	NULL	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
PGM2L1	283209	broad.mit.edu	36	11	73725393	73725393	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	73725393	73725393	C	G	SNP	PGM2L1	NM_173582	human	genbank	54_36p	-1	validated	missense	c.1821	p.E607D	1	superfamily_Phosphoglucomutase C-terminal domain	"superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase C-terminal domain"	-	no_errors
KCNE3	10008	broad.mit.edu	36	11	73845994	73845994	+	Missense_Mutation	SNP	C	C	A	rs17221833	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	73845994	73845994	C	A	SNP	KCNE3	NM_005472	human	genbank	54_36p	-1	reviewed	missense	c.263	p.R88L	1	NULL	NULL	-	no_errors
XRRA1	143570	broad.mit.edu	36	11	74233764	74233764	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	74233764	74233764	A	G	SNP	XRRA1	NM_182969	human	genbank	54_36p	-1	validated	splice_site	c.1903+2	e14+2	0.96	-	-	-	no_errors
NEU3	10825	broad.mit.edu	36	11	74383296	74383296	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	74383296	74383296	C	T	SNP	NEU3	NM_006656	human	genbank	54_36p	1	reviewed	silent	c.189	p.L63	1	superfamily_Sialidase	superfamily_Sialidase	-	no_errors
NEU3	10825	broad.mit.edu	36	11	74395108	74395108	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	74395108	74395108	C	T	SNP	NEU3	NM_006656	human	genbank	54_36p	1	reviewed	missense	c.1309	p.H437Y	0.02	superfamily_Sialidase	superfamily_Sialidase	-	no_errors
OR2AT4	341152	broad.mit.edu	36	11	74477819	74477819	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	74477819	74477819	G	T	SNP	OR2AT4	NM_001005285	human	genbank	54_36p	-1	provisional	missense	c.588	p.D196E	0.24	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SLCO2B1	11309	broad.mit.edu	36	11	74557927	74557927	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	74557927	74557927	G	C	SNP	SLCO2B1	NM_007256	human	genbank	54_36p	1	validated	silent	c.510	p.S170	0	"superfamily_MFS general substrate transporter,HMMPfam_OATP"	"superfamily_MFS general substrate transporter,HMMPfam_OATP"	-	no_errors
SLCO2B1	11309	broad.mit.edu	36	11	74588976	74588976	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	74588976	74588976	C	A	SNP	SLCO2B1	NM_007256	human	genbank	54_36p	1	validated	nonsense	c.1659	p.C553*	0.96	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	-	no_errors
SLCO2B1	11309	broad.mit.edu	36	11	74593133	74593133	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	74593133	74593133	A	T	SNP	SLCO2B1	NM_007256	human	genbank	54_36p	1	validated	missense	c.1990	p.I664F	0.01	superfamily_MFS general substrate transporter	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	-	no_errors
GDPD5	81544	broad.mit.edu	36	11	74831132	74831132	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	74831132	74831132	C	T	SNP	GDPD5	NM_030792	human	genbank	54_36p	-1	validated	missense	c.1091	p.R364Q	0.09	"superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD"	"superfamily_PLC-like phosphodiesterases,HMMPfam_GDPD"	-	no_errors
GDPD5	81544	broad.mit.edu	36	11	74837673	74837673	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	74837673	74837673	G	C	SNP	GDPD5	NM_030792	human	genbank	54_36p	-1	validated	silent	c.711	p.P237	1	"HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases"	"HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases"	-	no_errors
SERPINH1	871	broad.mit.edu	36	11	74955282	74955282	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	74955282	74955282	C	G	SNP	SERPINH1	NM_001235	human	genbank	54_36p	1	reviewed	silent	c.240	p.L80	1	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
SERPINH1	871	broad.mit.edu	36	11	74960735	74960735	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	74960735	74960735	C	G	SNP	SERPINH1	NM_001235	human	genbank	54_36p	1	reviewed	missense	c.1216	p.L406V	1	"HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins"	"HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins"	-	no_errors
C11orf30	56946	broad.mit.edu	36	11	75885041	75885041	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	11	75885041	75885041	G	C	SNP	C11orf30	NM_020193	human	genbank	54_36p	1	validated	missense	c.1243	p.V415L	0.9	NULL	HMMPfam_ENT	-	no_errors
C11orf30	56946	broad.mit.edu	36	11	75930920	75930920	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	75930920	75930920	C	A	SNP	C11orf30	NM_020193	human	genbank	54_36p	1	validated	missense	c.2570	p.S857Y	1	NULL	HMMPfam_ENT	-	no_errors
MYO7A	4647	broad.mit.edu	36	11	76547025	76547025	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	76547025	76547025	C	T	SNP	MYO7A	NM_000260	human	genbank	54_36p	1	reviewed	missense	c.904	p.R302C	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
CLNS1A	1207	broad.mit.edu	36	11	77018591	77018591	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77018591	77018591	G	A	SNP	CLNS1A	NM_001293	human	genbank	54_36p	-1	reviewed	missense	c.127	p.R43C	1	HMMPfam_ICln_channel	HMMPfam_ICln_channel	-	no_errors
RSF1	51773	broad.mit.edu	36	11	77055836	77055836	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77055836	77055836	T	C	SNP	RSF1	NM_016578	human	genbank	54_36p	-1	validated	missense	c.4100	p.D1367G	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
RSF1	51773	broad.mit.edu	36	11	77129624	77129624	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77129624	77129624	G	A	SNP	RSF1	NM_016578	human	genbank	54_36p	-1	validated	silent	c.378	p.L126	1	NULL	"HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
INTS4	92105	broad.mit.edu	36	11	77317144	77317144	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77317144	77317144	G	A	SNP	INTS4	NM_033547	human	genbank	54_36p	-1	validated	silent	c.1263	p.N421	1	"superfamily_ARM repeat,HMMPfam_HEAT"	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
KCTD14	65987	broad.mit.edu	36	11	77405940	77405940	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77405940	77405940	C	T	SNP	KCTD14	NM_023930	human	genbank	54_36p	-1	validated	missense	c.115	p.V39I	0.99	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra"	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra"	-	no_errors
ALG8	79053	broad.mit.edu	36	11	77509759	77509759	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77509759	77509759	G	A	SNP	ALG8	NM_024079	human	genbank	54_36p	-1	reviewed	missense	c.478	p.H160Y	1	HMMPfam_Alg6_Alg8	HMMPfam_Alg6_Alg8	-	no_errors
USP35	57558	broad.mit.edu	36	11	77585054	77585054	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77585054	77585054	C	T	SNP	USP35	NM_020798	human	genbank	54_36p	1	validated	silent	c.115	p.L39	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
GAB2	9846	broad.mit.edu	36	11	77612164	77612164	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77612164	77612164	G	C	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	missense	c.1509	p.S503R	0.98	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
GAB2	9846	broad.mit.edu	36	11	77615374	77615374	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	77615374	77615374	G	T	SNP	GAB2	NM_080491	human	genbank	54_36p	-1	reviewed	missense	c.992	p.T331N	0.99	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
ODZ4	26011	broad.mit.edu	36	11	78061015	78061015	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	78061015	78061015	T	A	SNP	ODZ4	NM_001098816	human	genbank	54_36p	-1	validated	missense	c.3518	p.N1173I	1	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_TolB C-terminal domain,HMMPfam_NHL,HMMPfam_RHS_repeat"	-	no_errors
C11orf82	220042	broad.mit.edu	36	11	82303441	82303441	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	82303441	82303441	C	T	SNP	C11orf82	NM_145018	human	genbank	54_36p	1	validated	nonsense	c.13	p.R5*	0.99	NULL	superfamily_Nucleic acid-binding proteins	-	no_errors
C11orf82	220042	broad.mit.edu	36	11	82317532	82317532	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	82317532	82317532	C	T	SNP	C11orf82	NM_145018	human	genbank	54_36p	1	validated	missense	c.179	p.S60F	1	superfamily_Nucleic acid-binding proteins	superfamily_Nucleic acid-binding proteins	-	no_errors
C11orf82	220042	broad.mit.edu	36	11	82322093	82322093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	82322093	82322093	A	T	SNP	C11orf82	NM_145018	human	genbank	54_36p	1	validated	missense	c.2065	p.I689F	0	NULL	superfamily_Nucleic acid-binding proteins	-	no_errors
CCDC90B	60492	broad.mit.edu	36	11	82674662	82674662	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	82674662	82674662	A	G	SNP	CCDC90B	NM_021825	human	genbank	54_36p	-1	provisional	missense	c.2	p.M1T	0.03	NULL	HMMPfam_DUF1640	-	no_errors
DLG2	1740	broad.mit.edu	36	11	83448129	83448129	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	83448129	83448129	C	A	SNP	DLG2	NM_001364	human	genbank	54_36p	-1	reviewed	missense	c.481	p.V161F	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	###############################################################################################################################################################################################################################################################	-	no_errors
EED	8726	broad.mit.edu	36	11	85633952	85633952	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	85633952	85633952	G	A	SNP	EED	NM_003797	human	genbank	54_36p	1	reviewed	silent	c.33	p.A11	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
EED	8726	broad.mit.edu	36	11	85639051	85639051	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	85639051	85639051	A	G	SNP	EED	NM_003797	human	genbank	54_36p	1	reviewed	silent	c.180	p.P60	0.99	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
ME3	10873	broad.mit.edu	36	11	85830125	85830125	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	85830125	85830125	G	A	SNP	ME3	NM_001014811	human	genbank	54_36p	-1	reviewed	silent	c.1659	p.L553	0.95	"HMMPfam_Malic_M,superfamily_NAD(P)-bd"	"superfamily_SSF53223,HMMPfam_malic,PatternScan_MALIC_ENZYMES,HMMPfam_Malic_M,superfamily_NAD(P)-bd"	-	no_errors
ME3	10873	broad.mit.edu	36	11	85835783	85835783	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	85835783	85835783	G	C	SNP	ME3	NM_001014811	human	genbank	54_36p	-1	reviewed	missense	c.1352	p.T451R	1	"HMMPfam_Malic_M,superfamily_NAD(P)-bd"	"HMMPfam_malic,HMMPfam_Malic_M,PatternScan_MALIC_ENZYMES,superfamily_NAD(P)-bd,superfamily_SSF53223"	-	no_errors
CTSC	1075	broad.mit.edu	36	11	87682116	87682116	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	87682116	87682116	G	T	SNP	CTSC	NM_001814	human	genbank	54_36p	-1	reviewed	nonsense	c.504	p.Y168*	0.08	superfamily_Cysteine proteinases	"HMMPfam_CathepsinC_exc,superfamily_Dipeptidyl peptidase I (cathepsin C) exclusion domain,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1,HMMSmart_SM00645,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN"	-	no_errors
CTSC	1075	broad.mit.edu	36	11	87710479	87710479	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	87710479	87710479	C	A	SNP	CTSC	NM_001814	human	genbank	54_36p	-1	reviewed	missense	c.10	p.G4W	0	NULL	"PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_SM00645,HMMPfam_CathepsinC_exc,superfamily_Cysteine proteinases,superfamily_Dipeptidyl peptidase I (cathepsin C) exclusion domain"	-	no_errors
GRM5	2915	broad.mit.edu	36	11	88420415	88420415	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	88420415	88420415	C	G	SNP	GRM5	NM_000842	human	genbank	54_36p	-1	reviewed	missense	c.274	p.G92R	1	"superfamily_SSF53822,HMMPfam_ANF_receptor"	"superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3,HMMPfam_GluR_Homer-bdg"	-	no_errors
TYR	7299	broad.mit.edu	36	11	88551390	88551390	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	11	88551390	88551390	T	C	SNP	TYR	NM_000372	human	genbank	54_36p	1	reviewed	silent	c.621	p.F207	1	"superfamily_Di-copper centre-containing domain,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1"	"superfamily_Di-copper centre-containing domain,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2"	-	no_errors
FOLH1B	219595	broad.mit.edu	36	11	89048986	89048986	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	89048986	89048986	T	A	SNP	PSMAL	NM_153696	human	genbank	54_36p	1	predicted	splice_site	c.448+2	e5+2	1	-	-	-	no_errors
FOLH1B	219595	broad.mit.edu	36	11	89063844	89063845	+	Missense_Mutation	DNP	CA	CA	TT	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	89063844	89063845	CA	TT	DNP	PSMAL	NM_153696	human	genbank	54_36p	1	predicted	missense	c.846_847	p.I283L	0.795:0.071	"superfamily_SSF53187,superfamily_Transferrin_rcpt-like_dimerise"	"superfamily_SSF53187,HMMPfam_Peptidase_M28,superfamily_Transferrin_rcpt-like_dimerise,HMMPfam_TFR_dimer"	-	no_errors
SLC36A4	120103	broad.mit.edu	36	11	92540844	92540844	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	92540844	92540844	C	G	SNP	SLC36A4	NM_152313	human	genbank	54_36p	-1	provisional	missense	c.682	p.E228Q	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC36A4	120103	broad.mit.edu	36	11	92557273	92557273	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	92557273	92557273	G	C	SNP	SLC36A4	NM_152313	human	genbank	54_36p	-1	provisional	missense	c.241	p.P81A	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
MED17	9440	broad.mit.edu	36	11	93166659	93166659	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	93166659	93166659	A	G	SNP	MED17	NM_004268	human	genbank	54_36p	1	reviewed	missense	c.755	p.E252G	1	HMMPfam_DUF2364	HMMPfam_DUF2364	-	no_errors
HEPHL1	341208	broad.mit.edu	36	11	93458971	93458978	+	Frame_Shift_Del	DEL	CCACAACA	-	CCACAACA	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	CCACAACA	CCACAACA	-	-	CCACAACA	CCACAACA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	93458971	93458978	CCACAACA	-	DEL	HEPHL1	NM_001098672	human	genbank	54_36p	1	validated	frame_shift_del	c.2048_2055	p.A683fs	0.048:0.003:0.000:0.000:0.000:0.599:0.650:0.443	superfamily_Cupredoxin	"superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE1,PatternScan_MULTICOPPER_OXIDASE2"	"(deletion:cds_exon[93458791,93459003])"	no_errors
MRE11A	4361	broad.mit.edu	36	11	93849165	93849165	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	93849165	93849165	T	A	SNP	MRE11A	NM_005591	human	genbank	54_36p	-1	reviewed	silent	c.597	p.T199	0.95	"HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases"	"HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases,HMMPfam_Mre11_DNA_bind"	-	no_errors
AMOTL1	154810	broad.mit.edu	36	11	94173036	94173036	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	94173036	94173036	G	C	SNP	AMOTL1	NM_130847	human	genbank	54_36p	1	reviewed	missense	c.1032	p.E344D	0.97	NULL	NULL	-	no_errors
SRSF8	10929	broad.mit.edu	36	11	94440692	94440692	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	94440692	94440692	C	T	SNP	SFRS2B	NM_032102	human	genbank	54_36p	1	reviewed	silent	c.654	p.L218	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CCDC82	79780	broad.mit.edu	36	11	95757511	95757511	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	95757511	95757511	C	T	SNP	CCDC82	NM_024725	human	genbank	54_36p	-1	validated	missense	c.49	p.V17M	0.78	NULL	NULL	-	no_errors
CNTN5	53942	broad.mit.edu	36	11	99220797	99220797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	99220797	99220797	G	A	SNP	CNTN5	NM_014361	human	genbank	54_36p	1	reviewed	missense	c.281	p.S94N	1	NULL	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
TRPC6	7225	broad.mit.edu	36	11	100867523	100867523	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	100867523	100867523	G	T	SNP	TRPC6	NM_004621	human	genbank	54_36p	-1	reviewed	missense	c.1102	p.L368I	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_TRP_2,HMMPfam_Ion_trans"	-	no_errors
TRPC6	7225	broad.mit.edu	36	11	100880101	100880101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	100880101	100880101	G	T	SNP	TRPC6	NM_004621	human	genbank	54_36p	-1	reviewed	missense	c.809	p.S270Y	1	HMMPfam_TRP_2	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2"	-	no_errors
ANGPTL5	253935	broad.mit.edu	36	11	101267415	101267415	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	101267415	101267415	G	A	SNP	ANGPTL5	NM_178127	human	genbank	54_36p	-1	validated	silent	c.972	p.C324	1	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C"	"superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
KIAA1377	57562	broad.mit.edu	36	11	101320316	101320316	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	101320316	101320316	G	A	SNP	KIAA1377	NM_020802	human	genbank	54_36p	1	validated	missense	c.359	p.R120H	1	NULL	NULL	-	no_errors
C11orf70	85016	broad.mit.edu	36	11	101442564	101442564	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	101442564	101442564	C	T	SNP	C11orf70	NM_032930	human	genbank	54_36p	1	predicted	missense	c.293	p.P98L	0.87	NULL	NULL	-	no_errors
BIRC3	330	broad.mit.edu	36	11	101712728	101712728	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	101712728	101712728	C	G	SNP	BIRC3	NM_001165	human	genbank	54_36p	1	reviewed	missense	c.1607	p.T536R	1	"superfamily_SSF57924,superfamily_DEATH_like"	"PatternScan_ZF_RING_1,superfamily_SSF57924,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
MMP27	64066	broad.mit.edu	36	11	102078699	102078699	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	102078699	102078699	C	T	SNP	MMP27	NM_022122	human	genbank	54_36p	-1	reviewed	missense	c.614	p.G205E	0	"HMMSmart_SM00235,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Peptidase_M10"	###############################################################################################################################################################################################################################################################	-	no_errors
MMP8	4317	broad.mit.edu	36	11	102090553	102090553	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	102090553	102090553	G	A	SNP	MMP8	NM_002424	human	genbank	54_36p	-1	reviewed	silent	c.1134	p.D378	1	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
MMP3	4314	broad.mit.edu	36	11	102216153	102216153	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	102216153	102216153	C	G	SNP	MMP3	NM_002422	human	genbank	54_36p	-1	reviewed	silent	c.831	p.T277	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MMP13	4322	broad.mit.edu	36	11	102331557	102331557	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	102331557	102331557	C	T	SNP	MMP13	NM_002427	human	genbank	54_36p	-1	reviewed	missense	c.88	p.D30N	0.08	NULL	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
DYNC2H1	79659	broad.mit.edu	36	11	102532374	102532374	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	102532374	102532374	A	T	SNP	DYNC2H1	NM_001080463	human	genbank	54_36p	1	provisional	missense	c.3792	p.L1264F	1	HMMPfam_DHC_N2	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DYNC2H1	79659	broad.mit.edu	36	11	102575379	102575379	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	102575379	102575379	A	G	SNP	DYNC2H1	NM_001080463	human	genbank	54_36p	1	provisional	silent	c.8052	p.G2684	0.85	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DYNC2H1	79659	broad.mit.edu	36	11	102844528	102844528	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	102844528	102844528	T	A	SNP	DYNC2H1	NM_001080463	human	genbank	54_36p	1	provisional	missense	c.12671	p.I4224N	1	HMMPfam_Dynein_heavy	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CASP4	837	broad.mit.edu	36	11	104325680	104325680	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	104325680	104325680	C	G	SNP	CASP4	NM_001225	human	genbank	54_36p	-1	reviewed	missense	c.581	p.R194T	0	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14"	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
CASP5	838	broad.mit.edu	36	11	104383020	104383020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	104383020	104383020	G	A	SNP	CASP5	NM_004347	human	genbank	54_36p	-1	reviewed	missense	c.385	p.P129S	0.07	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD"	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD,superfamily_SSF52129,HMMSmart_CASc,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
CASP1	834	broad.mit.edu	36	11	104406280	104406280	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	104406280	104406280	T	A	SNP	CASP1	NM_033292	human	genbank	54_36p	-1	reviewed	missense	c.614	p.N205I	0.18	"superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14"	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD,PatternScan_AMP_BINDING,superfamily_Caspase-like,HMMSmart_SM00115,HMMPfam_Peptidase_C14,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS"	-	no_errors
CARD17	440068	broad.mit.edu	36	11	104477348	104477348	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	104477348	104477348	C	G	SNP	CARD17	NM_001007232	human	genbank	54_36p	-1	provisional	missense	c.4	p.A2P	0.88	"HMMSmart_CARD,superfamily_DEATH_like"	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD"	-	no_errors
CARD18	59082	broad.mit.edu	36	11	104514961	104514961	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	104514961	104514961	G	T	SNP	CARD18	NM_021571	human	genbank	54_36p	-1	validated	missense	c.62	p.T21K	0.01	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD"	"HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD"	-	no_errors
GRIA4	2893	broad.mit.edu	36	11	104988219	104988219	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	104988219	104988219	T	C	SNP	GRIA4	NM_000829	human	genbank	54_36p	1	reviewed	missense	c.95	p.L32P	1	superfamily_SSF53822	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRIA4	2893	broad.mit.edu	36	11	105274336	105274336	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	105274336	105274336	G	A	SNP	GRIA4	NM_000829	human	genbank	54_36p	1	reviewed	silent	c.858	p.E286	0.87	"HMMPfam_ANF_receptor,superfamily_SSF53822"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850"	-	no_errors
GRIA4	2893	broad.mit.edu	36	11	105309706	105309706	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	105309706	105309706	G	C	SNP	GRIA4	NM_000829	human	genbank	54_36p	1	reviewed	missense	c.2095	p.A699P	1	"HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850"	-	no_errors
AASDHPPT	60496	broad.mit.edu	36	11	105453820	105453820	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	105453820	105453820	A	G	SNP	AASDHPPT	NM_015423	human	genbank	54_36p	1	reviewed	missense	c.173	p.K58R	1	superfamily_4-PPT_transf	"superfamily_4-PPT_transf,HMMPfam_ACPS"	-	no_errors
GUCY1A2	2977	broad.mit.edu	36	11	106152495	106152495	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	106152495	106152495	G	A	SNP	GUCY1A2	NM_000855	human	genbank	54_36p	-1	validated	silent	c.1716	p.Y572	1	"HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc"	"HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ALKBH8	91801	broad.mit.edu	36	11	106908244	106908244	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	106908244	106908244	C	G	SNP	ALKBH8	ENST00000389568	human	ensembl	54_36p	-1	known	missense	c.870	p.W290C	1	HMMPfam_2OG-FeII_Oxy	"HMMPfam_DUF1891,PatternScan_RIBOSOMAL_L23,HMMPfam_2OG-FeII_Oxy,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11"	-	no_errors
ACAT1	38	broad.mit.edu	36	11	107517594	107517594	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	107517594	107517594	T	C	SNP	ACAT1	NM_000019	human	genbank	54_36p	1	reviewed	silent	c.783	p.F261	1	"superfamily_Thiolase-like,HMMPfam_Thiolase_N"	"superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3"	-	no_errors
NPAT	4863	broad.mit.edu	36	11	107549693	107549693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	107549693	107549693	G	C	SNP	NPAT	NM_002519	human	genbank	54_36p	-1	validated	missense	c.1228	p.Q410E	0.03	NULL	HMMSmart_SM00667	-	no_errors
ATM	472	broad.mit.edu	36	11	107620790	107620790	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	107620790	107620790	T	C	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	missense	c.728	p.L243S	0.64	NULL	"superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
ATM	472	broad.mit.edu	36	11	107705108	107705108	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	107705108	107705108	C	T	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	nonsense	c.7240	p.Q2414*	1	"HMMPfam_FAT,superfamily_ARM repeat"	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
ATM	472	broad.mit.edu	36	11	107741029	107741029	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	107741029	107741029	A	G	SNP	ATM	NM_000051	human	genbank	54_36p	1	reviewed	missense	c.8861	p.Y2954C	1	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat"	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
C11orf65	160140	broad.mit.edu	36	11	107783049	107783049	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	107783049	107783049	C	T	SNP	C11orf65	NM_152587	human	genbank	54_36p	-1	validated	missense	c.212	p.R71Q	0.99	NULL	NULL	-	no_errors
C11orf65	160140	broad.mit.edu	36	11	107783085	107783085	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	107783085	107783085	G	C	SNP	C11orf65	NM_152587	human	genbank	54_36p	-1	validated	missense	c.176	p.A59G	1	NULL	NULL	-	no_errors
KDELC2	143888	broad.mit.edu	36	11	107855403	107855403	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	107855403	107855403	G	A	SNP	KDELC2	NM_153705	human	genbank	54_36p	-1	validated	silent	c.1128	p.T376	0.31	HMMSmart_SM00672	"HMMPfam_Filamin,superfamily_E set domains,HMMSmart_SM00557,HMMSmart_SM00672"	-	no_errors
EXPH5	23086	broad.mit.edu	36	11	107887170	107887170	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	107887170	107887170	G	A	SNP	EXPH5	NM_015065	human	genbank	54_36p	-1	validated	missense	c.4274	p.S1425F	0	NULL	NULL	-	no_errors
EXPH5	23086	broad.mit.edu	36	11	107890584	107890584	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	107890584	107890584	A	G	SNP	EXPH5	NM_015065	human	genbank	54_36p	-1	validated	missense	c.860	p.F287S	1	NULL	NULL	-	no_errors
C11orf87	399947	broad.mit.edu	36	11	108800039	108800039	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	108800039	108800039	C	G	SNP	C11orf87	NM_207645	human	genbank	54_36p	1	predicted	missense	c.470	p.P157R	0.53	NULL	NULL	-	no_errors
FDXACB1	91893	broad.mit.edu	36	11	111254995	111254995	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	111254995	111254995	C	T	SNP	FDXACB1	NM_138378	human	genbank	54_36p	-1	validated	silent	c.72	p.L24	0.01	HMMPfam_DUF2431	"HMMPfam_DUF2431,superfamily_Anticodon-binding domain of PheRS,HMMPfam_FDX-ACB"	-	no_errors
C11orf52	91894	broad.mit.edu	36	11	111301625	111301625	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	111301625	111301625	C	T	SNP	C11orf52	NM_080659	human	genbank	54_36p	1	validated	nonsense	c.109	p.Q37*	0.01	NULL	NULL	-	no_errors
DIXDC1	85458	broad.mit.edu	36	11	111361233	111361233	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	111361233	111361233	G	A	SNP	DIXDC1	ENST00000389821	human	ensembl	54_36p	1	known	missense	c.983	p.G328D	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_DIX,HMMSmart_SM00021"	-	no_errors
C11orf57	55216	broad.mit.edu	36	11	111458848	111458848	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	111458848	111458848	G	A	SNP	C11orf57	NM_001082969	human	genbank	54_36p	1	validated	missense	c.824	p.R275H	1	NULL	NULL	-	no_errors
NCAM1	4684	broad.mit.edu	36	11	112609226	112609226	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	112609226	112609226	C	T	SNP	NCAM1	ENST00000404693	human	ensembl	54_36p	1	known	missense	c.1286	p.S429F	0.57	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
NCAM1	4684	broad.mit.edu	36	11	112636188	112636188	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	112636188	112636188	C	T	SNP	NCAM1	NM_181351	human	genbank	54_36p	1	validated	missense	c.2065	p.P689S	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ANKK1	255239	broad.mit.edu	36	11	112775938	112775938	+	Silent	SNP	A	A	T	rs10615370	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	112775938	112775938	A	T	SNP	ANKK1	NM_178510	human	genbank	54_36p	1	provisional	silent	c.2037	p.L679	0.98	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ST,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
ZBTB16	7704	broad.mit.edu	36	11	113440093	113440093	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	113440093	113440093	C	G	SNP	ZBTB16	NM_001018011	human	genbank	54_36p	1	reviewed	missense	c.861	p.S287R	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2"	-	no_errors
RBM7	10179	broad.mit.edu	36	11	113778779	113778779	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	113778779	113778779	A	G	SNP	RBM7	NM_016090	human	genbank	54_36p	1	provisional	silent	c.279	p.Q93	0.99	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
FAM55D	54827	broad.mit.edu	36	11	113956229	113956229	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	113956229	113956229	T	A	SNP	FAM55D	NM_001077639	human	genbank	54_36p	-1	validated	missense	c.934	p.T312S	0.04	NULL	superfamily_E set domains	-	no_errors
FAM55D	54827	broad.mit.edu	36	11	113958227	113958227	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	113958227	113958227	A	G	SNP	FAM55D	NM_001077639	human	genbank	54_36p	-1	validated	missense	c.823	p.F275L	0.95	NULL	superfamily_E set domains	-	no_errors
SIK3	23387	broad.mit.edu	36	11	116239701	116239701	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	11	116239701	116239701	G	A	SNP	KIAA0999	NM_025164	human	genbank	54_36p	-1	validated	missense	c.1678	p.R560C	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SIDT2	51092	broad.mit.edu	36	11	116557414	116557414	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	116557414	116557414	C	A	SNP	SIDT2	NM_001040455	human	genbank	54_36p	1	validated	missense	c.256	p.Q86K	1	NULL	NULL	-	no_errors
BACE1	23621	broad.mit.edu	36	11	116691544	116691544	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	116691544	116691544	A	G	SNP	BACE1	NM_012104	human	genbank	54_36p	-1	reviewed	missense	c.178	p.F60L	1	superfamily_Acid proteases	"superfamily_Acid proteases,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
CEP164	22897	broad.mit.edu	36	11	116788066	116788066	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	116788066	116788066	A	C	SNP	CEP164	NM_014956	human	genbank	54_36p	1	validated	missense	c.4355	p.H1452P	0.61	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW"	-	no_errors
DSCAML1	57453	broad.mit.edu	36	11	116804321	116804321	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	116804321	116804321	G	A	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.6275	p.T2092I	1	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
DSCAML1	57453	broad.mit.edu	36	11	116834697	116834697	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	116834697	116834697	A	G	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.3731	p.I1244T	1	superfamily_Fibronectin type III	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
DSCAML1	57453	broad.mit.edu	36	11	116857947	116857947	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	116857947	116857947	C	T	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.2680	p.V894I	0.95	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
DSCAML1	57453	broad.mit.edu	36	11	116892526	116892526	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	116892526	116892526	C	A	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.1829	p.R610L	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
DSCAML1	57453	broad.mit.edu	36	11	116897285	116897285	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	116897285	116897285	A	G	SNP	DSCAML1	NM_020693	human	genbank	54_36p	-1	provisional	missense	c.1163	p.I388T	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
IL10RA	3587	broad.mit.edu	36	11	117369302	117369302	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	117369302	117369302	G	C	SNP	IL10RA	NM_001558	human	genbank	54_36p	1	reviewed	missense	c.504	p.E168D	0.01	"HMMPfam_IL10Ra-bind,superfamily_Fibronectin type III"	"HMMPfam_IL10Ra-bind,superfamily_Fibronectin type III"	-	no_errors
TMPRSS4	56649	broad.mit.edu	36	11	117483781	117483781	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	117483781	117483781	C	T	SNP	TMPRSS4	NM_019894	human	genbank	54_36p	1	reviewed	missense	c.523	p.R175C	0.82	"superfamily_SRCR-like,HMMSmart_SM00202"	"superfamily_LDL receptor-like module,HMMSmart_SM00192,HMMPfam_Ldl_recept_a,superfamily_SRCR-like,HMMSmart_SM00202,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
SCN4B	6330	broad.mit.edu	36	11	117517214	117517214	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	117517214	117517214	C	A	SNP	SCN4B	NM_174934	human	genbank	54_36p	-1	reviewed	missense	c.511	p.G171C	1	NULL	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin"	-	no_errors
UBE4A	9354	broad.mit.edu	36	11	117758581	117758581	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	117758581	117758581	C	G	SNP	UBE4A	NM_004788	human	genbank	54_36p	1	reviewed	missense	c.2098	p.Q700E	0.95	HMMPfam_Ufd2P_core	"HMMPfam_Ufd2P_core,HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box"	-	no_errors
MLL	4297	broad.mit.edu	36	11	117864597	117864597	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	117864597	117864597	A	G	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	missense	c.4391	p.E1464G	1	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	###############################################################################################################################################################################################################################################################	-	no_errors
MLL	4297	broad.mit.edu	36	11	117881432	117881432	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	117881432	117881432	C	A	SNP	MLL	NM_005933	human	genbank	54_36p	1	validated	missense	c.9606	p.S3202R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
PHLDB1	23187	broad.mit.edu	36	11	118003566	118003566	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	118003566	118003566	A	T	SNP	PHLDB1	NM_015157	human	genbank	54_36p	1	validated	missense	c.817	p.S273C	1	NULL	"superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
TREH	11181	broad.mit.edu	36	11	118036560	118036560	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	118036560	118036560	T	G	SNP	TREH	ENST00000264029	human	ensembl	54_36p	-1	known	missense	c.1000	p.N334H	0.06	"HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases"	"HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases,PatternScan_TREHALASE_1,PatternScan_TREHALASE_2"	-	no_errors
DDX6	1656	broad.mit.edu	36	11	118133101	118133101	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	11	118133101	118133101	T	C	SNP	DDX6	NM_004397	human	genbank	54_36p	-1	reviewed	missense	c.1066	p.K356E	1	"superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
HMBS	3145	broad.mit.edu	36	11	118464151	118464177	+	Splice_Site	DEL	GTGACCTGGGGACTTTTTCTGCAGGAA	-	GTGACCTGGGGACTTTTTCTGCAGGAA	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GTGACCTGGGGACTTTTTCTGCAGGAA	GTGACCTGGGGACTTTTTCTGCAGGAA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	118464151	118464177	GTGACCTGGGGACTTTTTCTGCAGGAA	-	DEL	HMBS	NM_000190	human	genbank	54_36p	1	reviewed	splice_site_del	c.34-24_34-1	e2-1	0.026:0.010:0.002:0.002:0.000:0.000:0.000:0.007:0.010:0.013:0.002:0.009:0.029:0.050:0.050:0.056:0.042:0.041:0.017:0.033:0.727:0.986:1.000:1.000:1.000:0.998:0.967	-	-	"(deletion:intron[118460987,118464174], cds_exon[118464175,118464228])"	no_errors
DPAGT1	1798	broad.mit.edu	36	11	118476625	118476625	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	118476625	118476625	A	G	SNP	DPAGT1	NM_001382	human	genbank	54_36p	-1	reviewed	missense	c.421	p.F141L	1	HMMPfam_Glycos_transf_4	HMMPfam_Glycos_transf_4	-	no_errors
NLRX1	79671	broad.mit.edu	36	11	118558087	118558087	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	118558087	118558087	C	T	SNP	NLRX1	NM_024618	human	genbank	54_36p	1	reviewed	missense	c.2429	p.T810M	0.02	"superfamily_RNI-like,HMMSmart_SM00368"	"HMMPfam_NACHT,HMMSmart_SM00368,superfamily_RNI-like"	-	no_errors
CBL	867	broad.mit.edu	36	11	118653681	118653681	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	118653681	118653681	T	C	SNP	CBL	NM_005188	human	genbank	54_36p	1	reviewed	silent	c.1012	p.L338	1	"HMMPfam_Cbl_N3,superfamily_SSF55550"	"HMMPfam_Cbl_N,superfamily_Adaptor_Cbl_N,HMMPfam_Cbl_N2,superfamily_SSF47473,HMMPfam_Cbl_N3,superfamily_SSF55550,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_UBA"	-	no_errors
MCAM	4162	broad.mit.edu	36	11	118687796	118687796	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	118687796	118687796	C	G	SNP	MCAM	NM_006500	human	genbank	54_36p	-1	validated	missense	c.1217	p.R406P	0.99	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
USP2	9099	broad.mit.edu	36	11	118733205	118733205	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	118733205	118733205	G	A	SNP	USP2	NM_004205	human	genbank	54_36p	-1	validated	silent	c.1632	p.Y544	0.92	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_2"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP2	9099	broad.mit.edu	36	11	118735051	118735051	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	118735051	118735051	C	G	SNP	USP2	NM_004205	human	genbank	54_36p	-1	validated	missense	c.1065	p.Q355H	1	"HMMPfam_UCH,superfamily_Cysteine proteinases"	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
TRIM29	23650	broad.mit.edu	36	11	119501780	119501780	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	119501780	119501780	A	T	SNP	TRIM29	NM_012101	human	genbank	54_36p	-1	reviewed	missense	c.1162	p.S388T	1	NULL	"HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain"	-	no_errors
POU2F3	25833	broad.mit.edu	36	11	119685431	119685431	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	119685431	119685431	C	T	SNP	POU2F3	NM_014352	human	genbank	54_36p	1	validated	nonsense	c.994	p.R332*	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	"HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ARHGEF12	23365	broad.mit.edu	36	11	119827526	119827526	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	119827526	119827526	C	T	SNP	ARHGEF12	NM_015313	human	genbank	54_36p	1	reviewed	missense	c.1939	p.R647C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
GRIK4	2900	broad.mit.edu	36	11	120281358	120281358	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	120281358	120281358	C	T	SNP	GRIK4	NM_014619	human	genbank	54_36p	1	reviewed	silent	c.1422	p.G474	0.99	"HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd"	"superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
TECTA	7007	broad.mit.edu	36	11	120533837	120533837	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	120533837	120533837	G	A	SNP	TECTA	NM_005422	human	genbank	54_36p	1	reviewed	silent	c.4383	p.P1461	0.98	"PatternScan_FA58C_2,HMMSmart_SM00215"	###############################################################################################################################################################################################################################################################	-	no_errors
TECTA	7007	broad.mit.edu	36	11	120536216	120536216	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	120536216	120536216	G	T	SNP	TECTA	NM_005422	human	genbank	54_36p	1	reviewed	missense	c.4852	p.V1618L	1	"HMMPfam_VWD,HMMSmart_SM00216"	###############################################################################################################################################################################################################################################################	-	no_errors
TECTA	7007	broad.mit.edu	36	11	120542593	120542593	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	120542593	120542593	G	C	SNP	TECTA	NM_005422	human	genbank	54_36p	1	reviewed	missense	c.5480	p.R1827T	1	"HMMPfam_Zona_pellucida,HMMSmart_SM00241"	###############################################################################################################################################################################################################################################################	-	no_errors
SORL1	6653	broad.mit.edu	36	11	120919645	120919645	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	120919645	120919645	G	T	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	nonsense	c.1864	p.G622*	1	"HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase"	###############################################################################################################################################################################################################################################################	-	no_errors
SORL1	6653	broad.mit.edu	36	11	120962233	120962233	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	120962233	120962233	G	A	SNP	SORL1	NM_003105	human	genbank	54_36p	1	reviewed	missense	c.3799	p.D1267N	1	"HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module"	###############################################################################################################################################################################################################################################################	-	no_errors
CRTAM	56253	broad.mit.edu	36	11	122231653	122231653	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	122231653	122231653	T	A	SNP	CRTAM	NM_019604	human	genbank	54_36p	1	validated	nonsense	c.531	p.C177*	0.12	"superfamily_Immunoglobulin,HMMPfam_C2-set_2"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2"	-	no_errors
GRAMD1B	57476	broad.mit.edu	36	11	122979344	122979344	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	122979344	122979344	C	T	SNP	GRAMD1B	NM_020716	human	genbank	54_36p	1	validated	missense	c.622	p.P208S	1	NULL	"HMMPfam_GRAM,HMMSmart_SM00568"	-	no_errors
GRAMD1B	57476	broad.mit.edu	36	11	122985727	122985727	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	122985727	122985727	C	T	SNP	GRAMD1B	NM_020716	human	genbank	54_36p	1	validated	missense	c.1243	p.P415S	0.99	NULL	"HMMPfam_GRAM,HMMSmart_SM00568"	-	no_errors
OR6X1	390260	broad.mit.edu	36	11	123129939	123129939	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123129939	123129939	G	A	SNP	OR6X1	NM_001005188	human	genbank	54_36p	-1	provisional	silent	c.498	p.F166	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR6X1	390260	broad.mit.edu	36	11	123130340	123130340	+	Frame_Shift_Del	DEL	A	-	-	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	11	123130340	123130340	A	-	DEL	OR6X1	NM_001005188	human	genbank	54_36p	-1	provisional	frame_shift_del	c.97	p.Y33fs	0.29	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[123129498,123130436])"	no_errors
OR10S1	219873	broad.mit.edu	36	11	123353334	123353334	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123353334	123353334	G	A	SNP	OR10S1	NM_001004474	human	genbank	54_36p	-1	provisional	missense	c.275	p.P92L	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OR10G4	390264	broad.mit.edu	36	11	123392381	123392381	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123392381	123392381	C	T	SNP	OR10G4	NM_001004462	human	genbank	54_36p	1	provisional	missense	c.890	p.A297V	0	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10G8	219869	broad.mit.edu	36	11	123406421	123406421	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123406421	123406421	G	T	SNP	OR10G8	NM_001004464	human	genbank	54_36p	1	provisional	silent	c.882	p.V294	0.96	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
VWA5A	4013	broad.mit.edu	36	11	123494936	123494936	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123494936	123494936	C	G	SNP	VWA5A	NM_014622	human	genbank	54_36p	1	validated	silent	c.690	p.L230	1	NULL	"HMMSmart_SM00609,HMMPfam_VIT,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	-	no_errors
OR8G2	26492	broad.mit.edu	36	11	123600700	123600700	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123600700	123600700	A	G	SNP	OR8G2	NM_001007249	human	genbank	54_36p	1	provisional	silent	c.93	p.S31	0.01	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR8G2	26492	broad.mit.edu	36	11	123601219	123601219	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123601219	123601219	C	A	SNP	OR8G2	NM_001007249	human	genbank	54_36p	1	provisional	missense	c.612	p.S204R	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR8D1	283159	broad.mit.edu	36	11	123685294	123685294	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	123685294	123685294	G	C	SNP	OR8D1	NM_001002917	human	genbank	54_36p	-1	provisional	missense	c.579	p.H193Q	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
VSIG2	23584	broad.mit.edu	36	11	124127207	124127207	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	124127207	124127207	G	T	SNP	VSIG2	NM_014312	human	genbank	54_36p	-1	provisional	missense	c.37	p.L13M	0.18	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig"	-	no_errors
ROBO3	64221	broad.mit.edu	36	11	124251398	124251399	+	Missense_Mutation	DNP	GA	GA	AG	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	124251398	124251399	GA	AG	DNP	ROBO3	NM_022370	human	genbank	54_36p	1	validated	missense	c.2611_2612	p.E871R	0.143:0.143	superfamily_Fibronectin type III	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ROBO3	64221	broad.mit.edu	36	11	124253130	124253130	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	124253130	124253130	C	T	SNP	ROBO3	NM_022370	human	genbank	54_36p	1	validated	missense	c.3074	p.A1025V	0.91	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
SLC37A2	219855	broad.mit.edu	36	11	124455789	124455789	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	124455789	124455789	C	A	SNP	SLC37A2	NM_198277	human	genbank	54_36p	1	validated	silent	c.597	p.A199	0.9	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SLC37A2	219855	broad.mit.edu	36	11	124459931	124459931	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	124459931	124459931	A	G	SNP	SLC37A2	NM_198277	human	genbank	54_36p	1	validated	missense	c.1126	p.M376V	1	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
PKNOX2	63876	broad.mit.edu	36	11	124726450	124726450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	124726450	124726450	G	C	SNP	PKNOX2	NM_022062	human	genbank	54_36p	1	validated	missense	c.39	p.M13I	1	NULL	"PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
PKNOX2	63876	broad.mit.edu	36	11	124805219	124805219	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	124805219	124805219	G	A	SNP	PKNOX2	NM_022062	human	genbank	54_36p	1	validated	silent	c.1164	p.Q388	1	NULL	"HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1"	-	no_errors
FEZ1	9638	broad.mit.edu	36	11	124864833	124864833	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	124864833	124864833	G	C	SNP	FEZ1	NM_005103	human	genbank	54_36p	-1	reviewed	silent	c.51	p.P17	1	NULL	HMMPfam_FEZ	-	no_errors
EI24	9538	broad.mit.edu	36	11	124952674	124952674	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	124952674	124952674	T	C	SNP	EI24	ENST00000397776	human	ensembl	54_36p	1	known	missense	c.314	p.I105T	1	HMMPfam_EI24	HMMPfam_EI24	-	no_errors
PUS3	83480	broad.mit.edu	36	11	125270366	125270366	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	125270366	125270366	G	T	SNP	PUS3	NM_031307	human	genbank	54_36p	-1	validated	missense	c.907	p.L303M	1	"superfamily_PsdUridine_synth_cat_dom,HMMPfam_PseudoU_synth_1"	"superfamily_PsdUridine_synth_cat_dom,HMMPfam_PseudoU_synth_1"	-	no_errors
CDON	50937	broad.mit.edu	36	11	125381080	125381080	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	125381080	125381080	A	C	SNP	CDON	NM_016952	human	genbank	54_36p	-1	validated	silent	c.1635	p.G545	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
CDON	50937	broad.mit.edu	36	11	125398520	125398520	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	125398520	125398520	G	C	SNP	CDON	NM_016952	human	genbank	54_36p	-1	validated	missense	c.62	p.S21C	0.95	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
FAM118B	79607	broad.mit.edu	36	11	125631830	125631830	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	125631830	125631830	G	C	SNP	FAM118B	NM_024556	human	genbank	54_36p	1	validated	missense	c.855	p.E285D	1	NULL	NULL	-	no_errors
TIRAP	114609	broad.mit.edu	36	11	125668158	125668158	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	125668158	125668158	G	A	SNP	TIRAP	NM_148910	human	genbank	54_36p	1	reviewed	missense	c.644	p.R215H	0.04	superfamily_Toll/Interleukin receptor TIR domain	superfamily_Toll/Interleukin receptor TIR domain	-	no_errors
DCPS	28960	broad.mit.edu	36	11	125720539	125720539	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	125720539	125720539	C	A	SNP	DCPS	NM_014026	human	genbank	54_36p	1	validated	missense	c.835	p.H279N	1	"HMMPfam_DcpS,superfamily_His_triad-like_motif,PatternScan_HIT_1"	"HMMPfam_DcpS,superfamily_Scavenger_mRNA_decap_enz_N,superfamily_His_triad-like_motif,PatternScan_HIT_1"	-	no_errors
KIRREL3	84623	broad.mit.edu	36	11	125811947	125811947	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	125811947	125811947	G	A	SNP	KIRREL3	NM_032531	human	genbank	54_36p	-1	provisional	silent	c.1521	p.S507	0.7	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set"	-	no_errors
KIRREL3	84623	broad.mit.edu	36	11	125812085	125812085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	125812085	125812085	C	A	SNP	KIRREL3	NM_032531	human	genbank	54_36p	-1	provisional	missense	c.1383	p.E461D	1	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
KIRREL3	84623	broad.mit.edu	36	11	125821979	125821979	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	125821979	125821979	A	T	SNP	KIRREL3	NM_032531	human	genbank	54_36p	-1	provisional	missense	c.1010	p.M337K	1	"HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
ETS1	2113	broad.mit.edu	36	11	127860089	127860089	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	127860089	127860089	G	C	SNP	ETS1	NM_005238	human	genbank	54_36p	-1	validated	missense	c.569	p.P190R	1	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
FLI1	2313	broad.mit.edu	36	11	128185730	128185730	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	128185730	128185730	C	T	SNP	FLI1	NM_002017	human	genbank	54_36p	1	validated	silent	c.996	p.Y332	0.99	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
FLI1	2313	broad.mit.edu	36	11	128185915	128185915	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	11	128185915	128185915	A	G	SNP	FLI1	NM_002017	human	genbank	54_36p	1	validated	missense	c.1181	p.H394R	1	superfamily_Winged helix DNA-binding domain	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_Winged helix DNA-binding domain"	-	no_errors
KCNJ1	3758	broad.mit.edu	36	11	128214814	128214814	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	128214814	128214814	C	T	SNP	KCNJ1	NM_000220	human	genbank	54_36p	-1	reviewed	missense	c.592	p.A198T	0.99	"HMMPfam_IRK,superfamily_E set domains"	"superfamily_Voltage-gated potassium channels,HMMPfam_IRK,superfamily_E set domains"	-	no_errors
ARHGAP32	9743	broad.mit.edu	36	11	128348499	128348499	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	128348499	128348499	C	A	SNP	RICS	NM_014715	human	genbank	54_36p	-1	validated	missense	c.2023	p.V675F	1	NULL	"superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
ARHGAP32	9743	broad.mit.edu	36	11	128498618	128498618	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	128498618	128498618	C	G	SNP	uc009zcp.1	ENST00000356092	human	ensembl	54_36p	-1	known	missense	c.335	p.G112A	1	NULL	"superfamily_PX domain,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_stop_codon
BARX2	8538	broad.mit.edu	36	11	128812028	128812028	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	128812028	128812028	G	T	SNP	BARX2	NM_003658	human	genbank	54_36p	1	reviewed	missense	c.360	p.E120D	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
NFRKB	4798	broad.mit.edu	36	11	129245037	129245037	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	129245037	129245037	G	A	SNP	NFRKB	NM_006165	human	genbank	54_36p	-1	validated	silent	c.3168	p.A1056	0	NULL	NULL	-	no_errors
ST14	6768	broad.mit.edu	36	11	129563297	129563297	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	129563297	129563297	C	T	SNP	ST14	NM_021978	human	genbank	54_36p	1	reviewed	missense	c.160	p.R54C	0.93	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ST14	6768	broad.mit.edu	36	11	129565684	129565684	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	129565684	129565684	T	G	SNP	ST14	NM_021978	human	genbank	54_36p	1	reviewed	missense	c.760	p.S254A	0.03	"HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB"	###############################################################################################################################################################################################################################################################	-	no_errors
ZBTB44	29068	broad.mit.edu	36	11	129635972	129635972	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	129635972	129635972	G	A	SNP	ZBTB44	NM_014155	human	genbank	54_36p	-1	validated	missense	c.1007	p.S336F	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ADAMTS8	11095	broad.mit.edu	36	11	129780955	129780955	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	129780955	129780955	A	G	SNP	ADAMTS8	NM_007037	human	genbank	54_36p	-1	reviewed	missense	c.2378	p.V793A	0.57	HMMPfam_ADAM_spacer1	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
NTM	50863	broad.mit.edu	36	11	131521429	131521429	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	131521429	131521429	C	T	SNP	NTM	NM_001048209	human	genbank	54_36p	1	reviewed	missense	c.211	p.R71C	1	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig"	-	no_errors
IGSF9B	22997	broad.mit.edu	36	11	133295556	133295556	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	133295556	133295556	G	T	SNP	IGSF9B	NM_014987	human	genbank	54_36p	-1	validated	missense	c.3274	p.P1092T	1	NULL	"superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3"	-	no_errors
NCAPD3	23310	broad.mit.edu	36	11	133567979	133567979	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	133567979	133567979	C	T	SNP	NCAPD3	NM_015261	human	genbank	54_36p	-1	validated	nonsense	c.1860	p.W620*	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_HEAT"	-	no_errors
NCAPD3	23310	broad.mit.edu	36	11	133595723	133595723	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	133595723	133595723	A	T	SNP	NCAPD3	NM_015261	human	genbank	54_36p	-1	validated	missense	c.172	p.Y58N	0.93	NULL	"HMMPfam_HEAT,superfamily_ARM-type_fold"	-	no_errors
ACAD8	27034	broad.mit.edu	36	11	133632324	133632325	+	Missense_Mutation	DNP	GG	GG	AT	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	133632324	133632325	GG	AT	DNP	ACAD8	NM_014384	human	genbank	54_36p	1	validated	missense	c.343_344	p.G115I	1.000:1.000	"superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N"	"PatternScan_ACYL_COA_DH_2,superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like"	-	no_errors
GLB1L3	112937	broad.mit.edu	36	11	133682227	133682227	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	11	133682227	133682227	G	T	SNP	GLB1L3	NM_001080407	human	genbank	54_36p	1	validated	splice_site	c.1000-1	e9-1	0.05	-	-	-	no_errors
GLB1L2	89944	broad.mit.edu	36	11	133717917	133717917	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	133717917	133717917	C	T	SNP	GLB1L2	NM_138342	human	genbank	54_36p	1	provisional	missense	c.146	p.A49V	0.43	NULL	"HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F35"	-	no_errors
KDM5A	5927	broad.mit.edu	36	12	287126	287126	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	287126	287126	G	A	SNP	JARID1A	NM_001042603	human	genbank	54_36p	-1	reviewed	missense	c.3685	p.L1229F	1	NULL	"HMMSmart_SM00545,HMMSmart_SM00501,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMSmart_SM00558"	-	no_errors
CCDC77	84318	broad.mit.edu	36	12	420055	420055	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	420055	420055	T	C	SNP	CCDC77	NM_032358	human	genbank	54_36p	1	validated	silent	c.1053	p.D351	1	NULL	NULL	-	no_errors
NINJ2	4815	broad.mit.edu	36	12	544825	544825	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	544825	544825	C	T	SNP	NINJ2	NM_016533	human	genbank	54_36p	-1	validated	missense	c.404	p.R135Q	0	HMMPfam_Ninjurin	HMMPfam_Ninjurin	-	no_errors
NINJ2	4815	broad.mit.edu	36	12	545486	545486	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	545486	545486	C	T	SNP	NINJ2	NM_016533	human	genbank	54_36p	-1	validated	silent	c.291	p.K97	1	HMMPfam_Ninjurin	HMMPfam_Ninjurin	-	no_errors
WNK1	65125	broad.mit.edu	36	12	809542	809542	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	809542	809542	C	T	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	silent	c.1266	p.Y422	1	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
WNK1	65125	broad.mit.edu	36	12	848090	848090	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	848090	848090	A	G	SNP	HSN2	NM_213655	human	genbank	54_36p	1	reviewed	silent	c.834	p.G278	1	NULL	NULL	-	no_errors
WNK1	65125	broad.mit.edu	36	12	875810	875810	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	875810	875810	A	G	SNP	WNK1	NM_018979	human	genbank	54_36p	1	validated	missense	c.5896	p.K1966E	1	NULL	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
ERC1	23085	broad.mit.edu	36	12	1351370	1351370	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	1351370	1351370	A	G	SNP	ERC1	NM_178040	human	genbank	54_36p	1	reviewed	missense	c.2891	p.E964G	1	HMMPfam_Cast	"HMMPfam_Cast,superfamily_Prefoldin,HMMPfam_RBD-FIP"	-	no_errors
CACNA2D4	93589	broad.mit.edu	36	12	1781036	1781036	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	1781036	1781036	G	C	SNP	CACNA2D4	NM_172364	human	genbank	54_36p	-1	reviewed	silent	c.2757	p.V919	0.04	NULL	"HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1"	-	no_errors
LRTM2	654429	broad.mit.edu	36	12	1814040	1814040	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	1814040	1814040	C	T	SNP	LRTM2	NM_001039029	human	genbank	54_36p	1	provisional	silent	c.1005	p.Y335	0.97	NULL	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082"	-	no_errors
CACNA1C	775	broad.mit.edu	36	12	2492406	2492406	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	2492406	2492406	G	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.1385	p.R462Q	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1C	775	broad.mit.edu	36	12	2586462	2586462	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	2586462	2586462	A	T	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.3261	p.Q1087H	0.99	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1C	775	broad.mit.edu	36	12	2644415	2644415	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	2644415	2644415	C	G	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.4396	p.L1466V	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1C	775	broad.mit.edu	36	12	2645016	2645016	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	2645016	2645016	C	T	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	silent	c.4407	p.N1469	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1C	775	broad.mit.edu	36	12	2658978	2658978	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	2658978	2658978	G	A	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	silent	c.5199	p.A1733	0.71	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1C	775	broad.mit.edu	36	12	2667995	2667995	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	2667995	2667995	T	C	SNP	CACNA1C	NM_000719	human	genbank	54_36p	1	reviewed	missense	c.5906	p.V1969A	0.98	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
NRIP2	83714	broad.mit.edu	36	12	2814317	2814317	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	2814317	2814317	C	G	SNP	NRIP2	NM_031474	human	genbank	54_36p	-1	validated	missense	c.94	p.E32Q	0	NULL	"superfamily_Acid proteases,PatternScan_ASP_PROTEASE"	-	no_errors
PRMT8	56341	broad.mit.edu	36	12	3556335	3556335	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	3556335	3556335	C	G	SNP	PRMT8	NM_019854	human	genbank	54_36p	1	validated	missense	c.750	p.I250M	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"PatternScan_HSP70_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
PRMT8	56341	broad.mit.edu	36	12	3572531	3572531	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	3572531	3572531	C	T	SNP	PRMT8	NM_019854	human	genbank	54_36p	1	validated	silent	c.1107	p.D369	1	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"PatternScan_HSP70_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
FGF23	8074	broad.mit.edu	36	12	4350108	4350108	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	4350108	4350108	G	A	SNP	FGF23	NM_020638	human	genbank	54_36p	-1	reviewed	missense	c.418	p.R140W	0.1	"superfamily_Cytok_IL1_like,HMMSmart_FGF"	"PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF"	-	no_errors
AKAP3	10566	broad.mit.edu	36	12	4607565	4607565	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	4607565	4607565	C	A	SNP	AKAP3	NM_006422	human	genbank	54_36p	-1	reviewed	missense	c.764	p.R255I	0.82	"HMMSmart_SM00807,HMMPfam_AKAP_110"	"HMMSmart_SM00807,HMMPfam_RII_binding_1,HMMPfam_AKAP_110"	-	no_errors
GALNT8	26290	broad.mit.edu	36	12	4723978	4723978	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	4723978	4723978	G	C	SNP	GALNT8	NM_017417	human	genbank	54_36p	1	reviewed	missense	c.711	p.K237N	0	"superfamily_SSF53448,HMMPfam_Glycos_transf_2"	"superfamily_SSF53448,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,HMMPfam_Ricin_B_lectin,HMMSmart_RICIN"	-	no_errors
KCNA1	3736	broad.mit.edu	36	12	4890821	4890821	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	4890821	4890821	G	C	SNP	KCNA1	NM_000217	human	genbank	54_36p	1	reviewed	missense	c.16	p.G6R	1	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans"	-	no_errors
KCNA1	3736	broad.mit.edu	36	12	4891810	4891810	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	4891810	4891810	C	T	SNP	KCNA1	NM_000217	human	genbank	54_36p	1	reviewed	silent	c.1005	p.I335	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324"	-	no_errors
KCNA5	3741	broad.mit.edu	36	12	5023889	5023889	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	5023889	5023889	C	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	1	reviewed	silent	c.315	p.G105	0.16	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
KCNA5	3741	broad.mit.edu	36	12	5024204	5024204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	5024204	5024204	G	A	SNP	KCNA5	NM_002234	human	genbank	54_36p	1	reviewed	missense	c.630	p.M210I	1	"HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain"	"HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels"	-	no_errors
NTF3	4908	broad.mit.edu	36	12	5474014	5474014	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	5474014	5474014	G	C	SNP	NTF3	NM_001102654	human	genbank	54_36p	1	reviewed	missense	c.412	p.G138R	1	NULL	"superfamily_SSF57501,HMMPfam_NGF,HMMSmart_NGF,PatternScan_NGF_1"	-	no_errors
ANO2	57101	broad.mit.edu	36	12	5555330	5555330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	5555330	5555330	T	C	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	missense	c.2555	p.N852S	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
ANO2	57101	broad.mit.edu	36	12	5579037	5579037	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	5579037	5579037	G	A	SNP	ANO2	NM_020373	human	genbank	54_36p	-1	validated	nonsense	c.2110	p.R704*	1	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
VWF	7450	broad.mit.edu	36	12	5971280	5971280	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	5971280	5971280	G	C	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	missense	c.6764	p.T2255S	0.95	superfamily_Serine proterase inhibitors	###############################################################################################################################################################################################################################################################	-	no_errors
VWF	7450	broad.mit.edu	36	12	5998813	5998813	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	5998813	5998813	G	A	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	silent	c.4032	p.A1344	0.03	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	###############################################################################################################################################################################################################################################################	-	no_errors
VWF	7450	broad.mit.edu	36	12	6054778	6054778	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	6054778	6054778	G	A	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	silent	c.858	p.T286	0.01	HMMPfam_C8	###############################################################################################################################################################################################################################################################	-	no_errors
CD9	928	broad.mit.edu	36	12	6179991	6179991	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6179991	6179991	G	T	SNP	CD9	NM_001769	human	genbank	54_36p	1	reviewed	missense	c.65	p.W22L	1	HMMPfam_Tetraspannin	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
PLEKHG6	55200	broad.mit.edu	36	12	6295019	6295019	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	6295019	6295019	G	A	SNP	PLEKHG6	NM_018173	human	genbank	54_36p	1	validated	silent	c.498	p.L166	0.96	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
LTBR	4055	broad.mit.edu	36	12	6370101	6370101	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	6370101	6370101	C	T	SNP	LTBR	NM_002342	human	genbank	54_36p	1	reviewed	missense	c.1045	p.H349Y	0.97	NULL	"superfamily_SSF57586,HMMPfam_TNFR_c6,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1"	-	no_errors
NCAPD2	9918	broad.mit.edu	36	12	6505594	6505594	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6505594	6505594	C	T	SNP	NCAPD2	NM_014865	human	genbank	54_36p	1	validated	silent	c.2448	p.C816	0.99	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NOP2	4839	broad.mit.edu	36	12	6543333	6543333	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6543333	6543333	C	T	SNP	NOP2	NM_001033714	human	genbank	54_36p	-1	validated	missense	c.503	p.R168Q	0.98	NULL	"superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu,PatternScan_NOL1_NOP2_SUN,HMMPfam_P120R"	-	no_errors
CHD4	1108	broad.mit.edu	36	12	6562294	6562294	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6562294	6562294	C	A	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.4217	p.R1406L	1	HMMPfam_DUF1086	###############################################################################################################################################################################################################################################################	-	no_errors
CHD4	1108	broad.mit.edu	36	12	6571219	6571219	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	6571219	6571219	C	A	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.3124	p.G1042C	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	###############################################################################################################################################################################################################################################################	-	no_errors
CHD4	1108	broad.mit.edu	36	12	6577366	6577366	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6577366	6577366	C	T	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.1847	p.G616E	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CHD4	1108	broad.mit.edu	36	12	6577472	6577472	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	6577472	6577472	C	G	SNP	CHD4	NM_001273	human	genbank	54_36p	-1	reviewed	missense	c.1741	p.D581H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LPAR5	57121	broad.mit.edu	36	12	6600556	6600556	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6600556	6600556	G	T	SNP	LPAR5	NM_020400	human	genbank	54_36p	-1	reviewed	missense	c.120	p.N40K	0.78	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ACRBP	84519	broad.mit.edu	36	12	6626372	6626372	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	6626372	6626372	A	C	SNP	ACRBP	NM_032489	human	genbank	54_36p	-1	reviewed	silent	c.111	p.P37	0.47	HMMPfam_PBP_sp32	"HMMPfam_PBP_sp32,superfamily_SSF100895,HMMSmart_KAZAL"	-	no_errors
ING4	51147	broad.mit.edu	36	12	6632438	6632438	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	6632438	6632438	G	A	SNP	ING4	NM_016162	human	genbank	54_36p	-1	reviewed	missense	c.316	p.R106C	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
COPS7A	50813	broad.mit.edu	36	12	6708813	6708813	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6708813	6708813	A	G	SNP	COPS7A	NM_016319	human	genbank	54_36p	1	provisional	missense	c.467	p.Y156C	1	"HMMPfam_PCI,HMMSmart_SM00088"	"HMMPfam_PCI,HMMSmart_SM00088"	-	no_errors
CD4	920	broad.mit.edu	36	12	6796678	6796678	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	6796678	6796678	G	T	SNP	CD4	NM_000616	human	genbank	54_36p	1	validated	missense	c.1077	p.W359C	0	"superfamily_Immunoglobulin,HMMPfam_C2-set"	"HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ig,HMMSmart_SM00406,HMMPfam_C2-set,HMMPfam_CD4-extracel"	-	no_errors
GPR162	27239	broad.mit.edu	36	12	6806506	6806506	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6806506	6806506	T	C	SNP	GPR162	NM_019858	human	genbank	54_36p	1	reviewed	missense	c.1643	p.V548A	0.02	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
LRRC23	10233	broad.mit.edu	36	12	6885137	6885137	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6885137	6885137	G	C	SNP	LRRC23	NM_201650	human	genbank	54_36p	1	validated	missense	c.79	p.E27Q	0.99	superfamily_L domain-like	"superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00365"	-	no_errors
ATN1	1822	broad.mit.edu	36	12	6915115	6915115	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6915115	6915115	G	A	SNP	ATN1	NM_001007026	human	genbank	54_36p	1	reviewed	missense	c.424	p.E142K	1	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
PHB2	11331	broad.mit.edu	36	12	6946612	6946612	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	6946612	6946612	G	C	SNP	PHB2	NM_007273	human	genbank	54_36p	-1	provisional	missense	c.772	p.Q258E	1	NULL	"HMMSmart_SM00244,HMMPfam_Band_7"	-	no_errors
RBP5	83758	broad.mit.edu	36	12	7172153	7172153	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7172153	7172153	C	G	SNP	RBP5	NM_031491	human	genbank	54_36p	-1	provisional	missense	c.202	p.G68R	1	"superfamily_Calycin,HMMPfam_Lipocalin"	"PatternScan_FABP,superfamily_Calycin,HMMPfam_Lipocalin"	-	no_errors
ACSM4	341392	broad.mit.edu	36	12	7348377	7348377	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7348377	7348377	G	A	SNP	ACSM4	NM_001080454	human	genbank	54_36p	1	inferred	silent	c.183	p.Q61	1	superfamily_SSF56801	"superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
CD163L1	283316	broad.mit.edu	36	12	7413464	7413464	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7413464	7413464	G	A	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	silent	c.3795	p.G1265	0.03	"HMMSmart_SM00202,superfamily_SRCR-like,HMMPfam_SRCR,PatternScan_SRCR_1"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CD163L1	283316	broad.mit.edu	36	12	7418493	7418512	+	Frame_Shift_Del	DEL	CACACCACGTGGGCATCGCT	-	CACACCACGTGGGCATCGCT	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	CACACCACGTGGGCATCGCT	CACACCACGTGGGCATCGCT	-	-	CACACCACGTGGGCATCGCT	CACACCACGTGGGCATCGCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	7418493	7418512	CACACCACGTGGGCATCGCT	-	DEL	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.3221_3202	p.D1069fs	1.000:1.000:0.964:0.999:1.000:1.000:1.000:0.977:0.004:0.011:0.034:0.247:0.958:0.967:0.940:0.938:0.917:0.000:0.000:0.001	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	"(deletion:cds_exon[7418305,7418619])"	no_errors
CD163L1	283316	broad.mit.edu	36	12	7419173	7419173	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7419173	7419173	T	C	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	missense	c.2972	p.H991R	0.01	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
CD163L1	283316	broad.mit.edu	36	12	7422901	7422901	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7422901	7422901	G	A	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	nonsense	c.2311	p.R771*	0	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
CD163L1	283316	broad.mit.edu	36	12	7422921	7422921	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7422921	7422921	G	T	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	missense	c.2291	p.A764D	0.01	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
CD163L1	283316	broad.mit.edu	36	12	7476563	7476563	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7476563	7476563	T	C	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	missense	c.482	p.N161S	0	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
CD163L1	283316	broad.mit.edu	36	12	7477313	7477313	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7477313	7477313	A	G	SNP	CD163L1	NM_174941	human	genbank	54_36p	-1	reviewed	silent	c.369	p.A123	0.15	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
CD163	9332	broad.mit.edu	36	12	7526584	7526584	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7526584	7526584	G	C	SNP	CD163	NM_004244	human	genbank	54_36p	-1	validated	missense	c.3169	p.L1057V	0	NULL	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1"	-	no_errors
CD163	9332	broad.mit.edu	36	12	7529120	7529120	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	12	7529120	7529120	C	T	SNP	CD163	NM_004244	human	genbank	54_36p	-1	validated	missense	c.2618	p.G873E	0.05	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
CD163	9332	broad.mit.edu	36	12	7531354	7531354	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	7531354	7531354	T	C	SNP	CD163	NM_004244	human	genbank	54_36p	-1	validated	missense	c.1918	p.K640E	1	"HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like"	"HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like"	-	no_errors
GDF3	9573	broad.mit.edu	36	12	7739588	7739588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7739588	7739588	G	T	SNP	GDF3	NM_020634	human	genbank	54_36p	-1	reviewed	missense	c.4	p.L2I	0.57	NULL	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
SLC2A14	144195	broad.mit.edu	36	12	7858391	7858391	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	7858391	7858391	A	C	SNP	SLC2A14	NM_153449	human	genbank	54_36p	-1	provisional	missense	c.1351	p.L451V	0.42	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
SLC2A3	6515	broad.mit.edu	36	12	7975292	7975292	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	7975292	7975292	C	A	SNP	SLC2A3	NM_006931	human	genbank	54_36p	-1	validated	missense	c.326	p.G109V	1	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
FOXJ2	55810	broad.mit.edu	36	12	8083874	8083881	+	Frame_Shift_Del	DEL	CAGTGCAC	-	CAGTGCAC	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	CAGTGCAC	CAGTGCAC	-	-	CAGTGCAC	CAGTGCAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	8083874	8083881	CAGTGCAC	-	DEL	FOXJ2	NM_018416	human	genbank	54_36p	1	validated	frame_shift_del	c.179_186	p.V61fs	0.862:0.823:0.986:0.989:0.986:1.000:1.000:1.000	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	"(deletion:cds_exon[8083696,8084028])"	no_errors
FOXJ2	55810	broad.mit.edu	36	12	8091930	8091930	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	8091930	8091930	C	G	SNP	FOXJ2	NM_018416	human	genbank	54_36p	1	validated	missense	c.1003	p.P335A	0.36	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
NECAP1	25977	broad.mit.edu	36	12	8136905	8136905	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	8136905	8136905	A	G	SNP	NECAP1	NM_015509	human	genbank	54_36p	1	validated	silent	c.663	p.G221	1	NULL	HMMPfam_DUF1681	-	no_errors
FAM90A1	55138	broad.mit.edu	36	12	8268675	8268675	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	8268675	8268675	G	C	SNP	FAM90A1	NM_018088	human	genbank	54_36p	-1	validated	silent	c.21	p.P7	0	NULL	NULL	-	no_errors
AICDA	57379	broad.mit.edu	36	12	8648783	8648783	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	8648783	8648783	A	G	SNP	AICDA	NM_020661	human	genbank	54_36p	-1	reviewed	missense	c.430	p.Y144H	1	"superfamily_Cytidine deaminase-like,HMMPfam_APOBEC_C"	"HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like,PatternScan_CYT_DCMP_DEAMINASES,HMMPfam_APOBEC_C"	-	no_errors
A2ML1	144568	broad.mit.edu	36	12	8882236	8882236	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	8882236	8882236	T	A	SNP	A2ML1	NM_144670	human	genbank	54_36p	1	validated	missense	c.893	p.M298K	0.98	NULL	"HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep"	-	no_errors
A2ML1	144568	broad.mit.edu	36	12	8882264	8882264	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	8882264	8882264	G	A	SNP	A2ML1	NM_144670	human	genbank	54_36p	1	validated	silent	c.921	p.A307	0	NULL	"HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN"	-	no_errors
A2ML1	144568	broad.mit.edu	36	12	8907744	8907744	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	8907744	8907744	C	G	SNP	A2ML1	NM_144670	human	genbank	54_36p	1	validated	missense	c.3590	p.T1197R	0.74	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp"	"HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN"	-	no_errors
A2ML1	144568	broad.mit.edu	36	12	8912192	8912192	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	8912192	8912192	C	T	SNP	A2ML1	NM_144670	human	genbank	54_36p	1	validated	nonsense	c.4033	p.R1345*	0.01	superfamily_Alpha-macroglobulin receptor domain	"HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN"	-	no_errors
PHC1	1911	broad.mit.edu	36	12	8974644	8974644	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	8974644	8974644	C	T	SNP	PHC1	NM_004426	human	genbank	54_36p	1	reviewed	missense	c.959	p.T320I	0.99	NULL	"HMMPfam_zf-FCS,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1"	-	no_errors
DDX12	440081	broad.mit.edu	36	12	9481918	9481919	+	In_Frame_Ins	INS	-	CTGAGTAAC	-	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	-	-	CTGAGTAAC	CTGAGTAAC	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	9481918	9481919	-	CTGAGTAAC	INS	DDX12	ENST00000290818	human	ensembl	54_36p	-1	known	in_frame_ins	c.349_348	p.116in_frame_insVTQ	1.000:0.990	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491"	-	no_errors
CLEC1A	51267	broad.mit.edu	36	12	10125126	10125126	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	10125126	10125126	C	T	SNP	CLEC1A	NM_016511	human	genbank	54_36p	-1	reviewed	missense	c.368	p.R123H	0.96	NULL	"PatternScan_C_TYPE_LECTIN_1,HMMPfam_Ly49,superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C"	-	no_errors
STYK1	55359	broad.mit.edu	36	12	10666533	10666533	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	10666533	10666533	C	A	SNP	STYK1	NM_018423	human	genbank	54_36p	-1	validated	missense	c.938	p.G313V	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase_Tyr"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
CSDA	8531	broad.mit.edu	36	12	10757084	10757084	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	10757084	10757084	G	T	SNP	CSDA	NM_003651	human	genbank	54_36p	-1	validated	missense	c.566	p.P189H	1	NULL	"superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK"	-	no_errors
TAS2R8	50836	broad.mit.edu	36	12	10849981	10849981	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	10849981	10849981	T	C	SNP	TAS2R8	NM_023918	human	genbank	54_36p	-1	reviewed	missense	c.866	p.N289S	0	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
TAS2R50	259296	broad.mit.edu	36	12	11030693	11030693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	11030693	11030693	G	C	SNP	TAS2R50	NM_176890	human	genbank	54_36p	-1	validated	missense	c.34	p.L12V	0	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
TAS2R46	259292	broad.mit.edu	36	12	11105796	11105796	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	11105796	11105796	T	C	SNP	TAS2R46	NM_176887	human	genbank	54_36p	-1	validated	missense	c.365	p.K122R	0.04	"HMMPfam_TAS2R,superfamily_SSF81321"	"HMMPfam_TAS2R,superfamily_SSF81321"	-	no_errors
PRB3	5544	broad.mit.edu	36	12	11312160	11312160	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	11312160	11312160	C	G	SNP	PRB3	ENST00000279573	human	ensembl	54_36p	-1	known	missense	c.290	p.G97A	0.01	NULL	NULL	-	no_errors
PRB4	5545	broad.mit.edu	36	12	11352549	11352549	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	11352549	11352549	T	A	SNP	PRB4	NM_002723	human	genbank	54_36p	-1	reviewed	missense	c.635	p.N212I	0	NULL	NULL	-	no_errors
ETV6	2120	broad.mit.edu	36	12	11928759	11928759	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	11928759	11928759	G	C	SNP	ETV6	NM_001987	human	genbank	54_36p	1	reviewed	missense	c.1123	p.G375R	1	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors
LRP6	4040	broad.mit.edu	36	12	12169545	12169545	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	12169545	12169545	T	A	SNP	LRP6	NM_002336	human	genbank	54_36p	-1	validated	silent	c.4401	p.G1467	1	NULL	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
LOH12CR1	118426	broad.mit.edu	36	12	12405482	12405482	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	12405482	12405482	G	A	SNP	LOH12CR1	NM_058169	human	genbank	54_36p	1	validated	missense	c.134	p.R45Q	1	NULL	HMMPfam_LOH1CR12	-	no_errors
CDKN1B	1027	broad.mit.edu	36	12	12762272	12762272	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	12762272	12762272	G	A	SNP	CDKN1B	NM_004064	human	genbank	54_36p	1	validated	missense	c.232	p.E78K	0.88	HMMPfam_CDI	HMMPfam_CDI	-	no_errors
APOLD1	81575	broad.mit.edu	36	12	12831529	12831529	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	12831529	12831529	C	G	SNP	APOLD1	NM_030817	human	genbank	54_36p	1	validated	missense	c.423	p.F141L	1	NULL	NULL	-	no_errors
DDX47	51202	broad.mit.edu	36	12	12865868	12865868	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	12865868	12865868	G	T	SNP	DDX47	NM_016355	human	genbank	54_36p	1	reviewed	missense	c.383	p.G128V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
GPRC5A	9052	broad.mit.edu	36	12	12953037	12953037	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	12953037	12953037	C	T	SNP	GPRC5A	NM_003979	human	genbank	54_36p	1	reviewed	missense	c.587	p.S196F	0	HMMPfam_7tm_3	HMMPfam_7tm_3	-	no_errors
GPRC5D	55507	broad.mit.edu	36	12	12994440	12994440	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	12994440	12994440	C	A	SNP	GPRC5D	NM_018654	human	genbank	54_36p	-1	reviewed	missense	c.146	p.R49L	0	HMMPfam_7tm_3	HMMPfam_7tm_3	-	no_errors
GRIN2B	2904	broad.mit.edu	36	12	13910020	13910020	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	13910020	13910020	G	T	SNP	GRIN2B	NM_000834	human	genbank	54_36p	-1	reviewed	silent	c.390	p.S130	1	superfamily_SSF53822	"superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C"	-	no_errors
ATF7IP	55729	broad.mit.edu	36	12	14468581	14468581	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	14468581	14468581	C	A	SNP	ATF7IP	NM_018179	human	genbank	54_36p	1	validated	silent	c.465	p.T155	0	NULL	"superfamily_Fibronectin type III,HMMPfam_fn3"	-	no_errors
GUCY2C	2984	broad.mit.edu	36	12	14687853	14687853	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	14687853	14687853	T	C	SNP	GUCY2C	NM_004963	human	genbank	54_36p	-1	validated	missense	c.1852	p.T618A	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
GUCY2C	2984	broad.mit.edu	36	12	14740583	14740583	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	14740583	14740583	T	C	SNP	GUCY2C	NM_004963	human	genbank	54_36p	-1	validated	missense	c.67	p.S23G	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
H2AFJ	55766	broad.mit.edu	36	12	14818950	14818950	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	14818950	14818950	G	C	SNP	H2AFJ	NM_177925	human	genbank	54_36p	1	reviewed	missense	c.279	p.E93D	1	"superfamily_Histone-fold,HMMSmart_SM00414"	"superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A"	-	no_errors
C12orf60	144608	broad.mit.edu	36	12	14867807	14867807	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	14867807	14867807	T	G	SNP	C12orf60	NM_175874	human	genbank	54_36p	1	validated	missense	c.671	p.I224S	0.02	NULL	NULL	-	no_errors
RERG	85004	broad.mit.edu	36	12	15153377	15153377	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	15153377	15153377	C	T	SNP	RERG	NM_032918	human	genbank	54_36p	-1	provisional	silent	c.534	p.R178	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	-	no_errors
EPS8	2059	broad.mit.edu	36	12	15702324	15702324	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	15702324	15702324	T	C	SNP	EPS8	NM_004447	human	genbank	54_36p	-1	reviewed	missense	c.1057	p.S353G	0.99	NULL	"HMMSmart_PTB,superfamily_SSF50729,HMMPfam_PTB,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
EPS8	2059	broad.mit.edu	36	12	15709972	15709972	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	15709972	15709972	C	G	SNP	EPS8	NM_004447	human	genbank	54_36p	-1	reviewed	missense	c.721	p.A241P	0.99	NULL	"HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729"	-	no_errors
MGST1	4257	broad.mit.edu	36	12	16408059	16408059	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	16408059	16408059	G	T	SNP	MGST1	NM_020300	human	genbank	54_36p	1	reviewed	missense	c.285	p.L95F	1	HMMPfam_MAPEG	HMMPfam_MAPEG	-	no_errors
PIK3C2G	5288	broad.mit.edu	36	12	18391014	18391014	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	18391014	18391014	C	T	SNP	PIK3C2G	ENST00000266497	human	ensembl	54_36p	1	known	silent	c.1602	p.N534	1	HMMPfam_PI3K_C2	###############################################################################################################################################################################################################################################################	-	no_errors
PIK3C2G	5288	broad.mit.edu	36	12	18549513	18549513	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	12	18549513	18549513	C	T	SNP	PIK3C2G	ENST00000266497	human	ensembl	54_36p	1	known	silent	c.3051	p.Y1017	1	"HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
CAPZA3	93661	broad.mit.edu	36	12	18782876	18782876	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	18782876	18782876	G	C	SNP	CAPZA3	NM_033328	human	genbank	54_36p	1	reviewed	missense	c.407	p.G136A	0.93	"superfamily_SSF90096,HMMPfam_F-actin_cap_A"	"superfamily_SSF90096,HMMPfam_F-actin_cap_A,PatternScan_F_ACTIN_CAPPING_A_1,PatternScan_F_ACTIN_CAPPING_A_2"	-	no_errors
AEBP2	121536	broad.mit.edu	36	12	19484524	19484524	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	19484524	19484524	G	A	SNP	AEBP2	ENST00000266508	human	ensembl	54_36p	1	known	silent	c.624	p.E208	1	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PDE3A	5139	broad.mit.edu	36	12	20674322	20674322	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	20674322	20674322	G	T	SNP	PDE3A	NM_000921	human	genbank	54_36p	1	validated	missense	c.1754	p.C585F	1	NULL	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
PDE3A	5139	broad.mit.edu	36	12	20691141	20691141	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	20691141	20691141	G	C	SNP	PDE3A	NM_000921	human	genbank	54_36p	1	validated	missense	c.2555	p.S852T	1	"HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604"	"HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,superfamily_SSF109604"	-	no_errors
SLCO1C1	53919	broad.mit.edu	36	12	20781368	20781368	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	20781368	20781368	A	T	SNP	SLCO1C1	NM_017435	human	genbank	54_36p	1	reviewed	missense	c.1443	p.K481N	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
SLCO1B3	28234	broad.mit.edu	36	12	20923791	20923791	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	20923791	20923791	C	T	SNP	SLCO1B3	NM_019844	human	genbank	54_36p	1	validated	silent	c.1290	p.C430	0.88	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2"	-	no_errors
SLCO1B3	28234	broad.mit.edu	36	12	20945663	20945663	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	20945663	20945663	T	C	SNP	SLCO1B3	NM_019844	human	genbank	54_36p	1	validated	silent	c.1860	p.F620	0.02	"HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter"	"HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895"	-	no_errors
RECQL	5965	broad.mit.edu	36	12	21515263	21515263	+	Silent	SNP	C	C	G	rs2417989	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	21515263	21515263	C	G	SNP	RECQL	NM_002907	human	genbank	54_36p	-1	reviewed	silent	c.1704	p.S568	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
RECQL	5965	broad.mit.edu	36	12	21517783	21517783	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	21517783	21517783	G	T	SNP	RECQL	NM_002907	human	genbank	54_36p	-1	reviewed	missense	c.1416	p.N472K	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCC9	10060	broad.mit.edu	36	12	21851660	21851660	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	21851660	21851660	C	A	SNP	ABCC9	NM_005691	human	genbank	54_36p	-1	reviewed	missense	c.4336	p.G1446W	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC9	10060	broad.mit.edu	36	12	21903817	21903817	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	21903817	21903817	C	T	SNP	ABCC9	NM_005691	human	genbank	54_36p	-1	reviewed	silent	c.2475	p.A825	0.99	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCC9	10060	broad.mit.edu	36	12	21978114	21978114	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	21978114	21978114	G	A	SNP	ABCC9	NM_005691	human	genbank	54_36p	-1	reviewed	silent	c.153	p.S51	1	NULL	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ST8SIA1	6489	broad.mit.edu	36	12	22331372	22331372	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	22331372	22331372	G	A	SNP	ST8SIA1	NM_003034	human	genbank	54_36p	-1	reviewed	missense	c.359	p.S120L	0.86	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
ST8SIA1	6489	broad.mit.edu	36	12	22378368	22378368	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	22378368	22378368	C	G	SNP	ST8SIA1	NM_003034	human	genbank	54_36p	-1	reviewed	missense	c.66	p.K22N	1	NULL	HMMPfam_Glyco_transf_29	-	no_errors
SOX5	6660	broad.mit.edu	36	12	23607544	23607544	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	23607544	23607544	T	G	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.1403	p.E468A	1	NULL	"PatternScan_TONB_DEPENDENT_REC_1,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
SOX5	6660	broad.mit.edu	36	12	23648643	23648643	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	23648643	23648643	G	A	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.1109	p.S370F	1	NULL	"HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_TONB_DEPENDENT_REC_1"	-	no_errors
SOX5	6660	broad.mit.edu	36	12	23940208	23940208	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	23940208	23940208	G	C	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.56	p.P19R	1	PatternScan_TONB_DEPENDENT_REC_1	"HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_TONB_DEPENDENT_REC_1"	-	no_errors
LRMP	4033	broad.mit.edu	36	12	25146435	25146435	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	25146435	25146435	A	T	SNP	LRMP	NM_006152	human	genbank	54_36p	1	reviewed	missense	c.926	p.N309I	1	HMMPfam_MRVI1	HMMPfam_MRVI1	-	no_errors
LRMP	4033	broad.mit.edu	36	12	25148247	25148247	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	25148247	25148247	G	A	SNP	LRMP	NM_006152	human	genbank	54_36p	1	reviewed	missense	c.1034	p.R345K	0.88	HMMPfam_MRVI1	HMMPfam_MRVI1	-	no_errors
CASC1	55259	broad.mit.edu	36	12	25188760	25188760	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	25188760	25188760	G	A	SNP	CASC1	NM_018272	human	genbank	54_36p	-1	validated	missense	c.808	p.H270Y	0	NULL	NULL	-	no_errors
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	25289551	25289551	C	A	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.35	p.G12V	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
IFLTD1	160492	broad.mit.edu	36	12	25564158	25564158	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	25564158	25564158	C	G	SNP	IFLTD1	NM_152590	human	genbank	54_36p	-1	validated	missense	c.854	p.W285S	0.01	NULL	"superfamily_Lamin A/C globular tail domain,HMMPfam_IF_tail"	-	no_errors
STK38L	23012	broad.mit.edu	36	12	27362215	27362215	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	12	27362215	27362215	C	A	SNP	STK38L	NM_015000	human	genbank	54_36p	1	validated	missense	c.1075	p.L359I	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
ERGIC2	51290	broad.mit.edu	36	12	29401902	29401902	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	29401902	29401902	T	G	SNP	ERGIC2	NM_016570	human	genbank	54_36p	-1	validated	silent	c.397	p.R133	1	NULL	HMMPfam_DUF1692	-	no_errors
OVCH1	341350	broad.mit.edu	36	12	29520447	29520447	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	29520447	29520447	G	A	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	missense	c.1430	p.A477V	0.96	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
OVCH1	341350	broad.mit.edu	36	12	29521596	29521596	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	29521596	29521596	T	C	SNP	OVCH1	NM_183378	human	genbank	54_36p	-1	validated	silent	c.1191	p.E397	0	superfamily_Spermadhesin CUB domain	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
CAPRIN2	65981	broad.mit.edu	36	12	30797725	30797725	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	30797725	30797725	C	T	SNP	CAPRIN2	NM_001002259	human	genbank	54_36p	-1	validated	silent	c.240	p.G80	0.77	NULL	"HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q"	-	no_errors
C12orf35	55196	broad.mit.edu	36	12	32026322	32026322	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	32026322	32026322	C	G	SNP	C12orf35	NM_018169	human	genbank	54_36p	1	validated	missense	c.1166	p.A389G	0.36	NULL	NULL	-	no_errors
C12orf35	55196	broad.mit.edu	36	12	32026913	32026913	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	32026913	32026913	C	G	SNP	C12orf35	NM_018169	human	genbank	54_36p	1	validated	missense	c.1757	p.A586G	0	NULL	NULL	-	no_errors
FGD4	121512	broad.mit.edu	36	12	32642767	32642767	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	32642767	32642767	C	T	SNP	FGD4	NM_139241	human	genbank	54_36p	1	reviewed	nonsense	c.670	p.R224*	1	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
PKP2	5318	broad.mit.edu	36	12	32922444	32922444	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	32922444	32922444	G	A	SNP	PKP2	NM_004572	human	genbank	54_36p	-1	reviewed	missense	c.637	p.H213Y	0	NULL	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	-	no_errors
ALG10B	144245	broad.mit.edu	36	12	36997004	36997004	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	36997004	36997004	C	A	SNP	ALG10B	NM_001013620	human	genbank	54_36p	1	validated	missense	c.42	p.S14R	1	NULL	HMMPfam_DIE2_ALG10	-	no_errors
ALG10B	144245	broad.mit.edu	36	12	36997041	36997041	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	36997041	36997041	T	A	SNP	ALG10B	NM_001013620	human	genbank	54_36p	1	validated	missense	c.79	p.F27I	1	NULL	HMMPfam_DIE2_ALG10	-	no_errors
ALG10B	144245	broad.mit.edu	36	12	37000505	37000505	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	37000505	37000505	G	T	SNP	ALG10B	NM_001013620	human	genbank	54_36p	1	validated	missense	c.645	p.K215N	1	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors
ALG10B	144245	broad.mit.edu	36	12	37000607	37000607	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	37000607	37000607	G	A	SNP	ALG10B	NM_001013620	human	genbank	54_36p	1	validated	missense	c.747	p.M249I	0.39	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors
KIF21A	55605	broad.mit.edu	36	12	37998229	37998229	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	37998229	37998229	G	A	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	missense	c.3782	p.S1261F	1	superfamily_WD40 repeat-like	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40 repeat-like,superfamily_Prefoldin,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
KIF21A	55605	broad.mit.edu	36	12	38020341	38020341	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	38020341	38020341	G	A	SNP	KIF21A	NM_017641	human	genbank	54_36p	-1	validated	missense	c.2164	p.L722F	1	superfamily_WD40 repeat-like	"HMMSmart_SM00320,HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_Prefoldin,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
C12orf40	283461	broad.mit.edu	36	12	38330387	38330387	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	38330387	38330387	C	T	SNP	C12orf40	NM_001031748	human	genbank	54_36p	1	validated	missense	c.650	p.T217I	0	NULL	NULL	-	no_errors
C12orf40	283461	broad.mit.edu	36	12	38362848	38362848	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	38362848	38362848	C	A	SNP	C12orf40	NM_001031748	human	genbank	54_36p	1	validated	missense	c.855	p.N285K	0.79	NULL	NULL	-	no_errors
C12orf40	283461	broad.mit.edu	36	12	38362935	38362935	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	38362935	38362935	G	A	SNP	C12orf40	NM_001031748	human	genbank	54_36p	1	validated	silent	c.942	p.R314	0	NULL	NULL	-	no_errors
C12orf40	283461	broad.mit.edu	36	12	38363090	38363090	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	38363090	38363090	G	T	SNP	C12orf40	NM_001031748	human	genbank	54_36p	1	validated	missense	c.1097	p.S366I	0.01	NULL	NULL	-	no_errors
C12orf40	283461	broad.mit.edu	36	12	38401072	38401072	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	38401072	38401072	T	G	SNP	C12orf40	NM_001031748	human	genbank	54_36p	1	validated	missense	c.1711	p.C571G	0.03	NULL	NULL	-	no_errors
LRRK2	120892	broad.mit.edu	36	12	38954744	38954744	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	38954744	38954744	A	C	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.1749	p.E583D	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52540,HMMPfam_Miro,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,superfamily_WD40_like,HMMSmart_WD40,PatternScan_RCC1_2"	-	no_errors
LRRK2	120892	broad.mit.edu	36	12	38979286	38979286	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	38979286	38979286	T	A	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	nonsense	c.3456	p.C1152*	0.47	"HMMPfam_LRR_1,superfamily_SSF52058"	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
LRRK2	120892	broad.mit.edu	36	12	38982936	38982936	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	38982936	38982936	T	C	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.3575	p.I1192T	1	superfamily_SSF52058	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
LRRK2	120892	broad.mit.edu	36	12	38990519	38990519	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	38990519	38990519	C	T	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.4337	p.P1446L	1	"HMMPfam_Miro,superfamily_SSF52540"	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
LRRK2	120892	broad.mit.edu	36	12	38994218	38994218	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	38994218	38994218	G	A	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.4714	p.A1572T	1	NULL	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
LRRK2	120892	broad.mit.edu	36	12	39002201	39002201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	39002201	39002201	C	A	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.5268	p.D1756E	0.44	NULL	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
LRRK2	120892	broad.mit.edu	36	12	39002427	39002427	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	39002427	39002427	C	T	SNP	LRRK2	NM_198578	human	genbank	54_36p	1	reviewed	missense	c.5357	p.S1786F	1	NULL	"PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540"	-	no_errors
CNTN1	1272	broad.mit.edu	36	12	39623793	39623793	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	39623793	39623793	G	C	SNP	CNTN1	NM_001843	human	genbank	54_36p	1	reviewed	missense	c.1507	p.D503H	1	superfamily_Immunoglobulin	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,PatternScan_N6_MTASE,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
CNTN1	1272	broad.mit.edu	36	12	39694366	39694366	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	39694366	39694366	C	T	SNP	CNTN1	NM_001843	human	genbank	54_36p	1	reviewed	missense	c.2183	p.A728V	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
PDZRN4	29951	broad.mit.edu	36	12	40232766	40232766	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	40232766	40232766	C	A	SNP	PDZRN4	NM_013377	human	genbank	54_36p	1	validated	silent	c.471	p.G157	0.91	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	"superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ"	-	no_errors
PRICKLE1	144165	broad.mit.edu	36	12	41140237	41140237	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	41140237	41140237	T	C	SNP	PRICKLE1	NM_153026	human	genbank	54_36p	-1	validated	missense	c.2137	p.I713V	0.02	NULL	"HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716"	-	no_errors
ADAMTS20	80070	broad.mit.edu	36	12	42110486	42110486	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	42110486	42110486	T	A	SNP	ADAMTS20	NM_025003	human	genbank	54_36p	-1	validated	missense	c.3317	p.E1106V	0.5	"HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_TSP-1 type 1 repeat"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
IRAK4	51135	broad.mit.edu	36	12	42448338	42448338	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	12	42448338	42448338	A	G	SNP	IRAK4	NM_016123	human	genbank	54_36p	1	reviewed	missense	c.157	p.I53V	1	superfamily_DEATH domain	"superfamily_DEATH domain,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220"	-	no_errors
ANO6	196527	broad.mit.edu	36	12	44083507	44083507	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	44083507	44083507	C	T	SNP	ANO6	NM_001025356	human	genbank	54_36p	1	validated	missense	c.1801	p.L601F	1	NULL	HMMPfam_DUF590	-	no_errors
ARID2	196528	broad.mit.edu	36	12	44516673	44516673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	12	44516673	44516673	G	A	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.740	p.R247H	1	NULL	"HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501,superfamily_Winged helix DNA-binding domain,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARID2	196528	broad.mit.edu	36	12	44531603	44531603	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	44531603	44531603	C	T	SNP	ARID2	NM_152641	human	genbank	54_36p	1	validated	missense	c.3430	p.P1144S	0.99	NULL	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Winged helix DNA-binding domain"	-	no_errors
SLC38A1	81539	broad.mit.edu	36	12	44887277	44887277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	44887277	44887277	C	T	SNP	SLC38A1	NM_001077484	human	genbank	54_36p	-1	validated	missense	c.491	p.S164N	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC38A4	55089	broad.mit.edu	36	12	45456983	45456983	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	45456983	45456983	G	A	SNP	SLC38A4	NM_018018	human	genbank	54_36p	-1	validated	missense	c.1145	p.A382V	1	HMMPfam_Aa_trans	"HMMPfam_Aa_trans,PatternScan_RIBOSOMAL_L30"	-	no_errors
SLC38A4	55089	broad.mit.edu	36	12	45459712	45459712	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	45459712	45459712	A	C	SNP	SLC38A4	NM_018018	human	genbank	54_36p	-1	validated	silent	c.666	p.L222	1	HMMPfam_Aa_trans	"HMMPfam_Aa_trans,PatternScan_RIBOSOMAL_L30"	-	no_errors
SLC38A4	55089	broad.mit.edu	36	12	45468075	45468075	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	45468075	45468075	C	T	SNP	SLC38A4	NM_018018	human	genbank	54_36p	-1	validated	missense	c.217	p.G73R	1	HMMPfam_Aa_trans	"HMMPfam_Aa_trans,PatternScan_RIBOSOMAL_L30"	-	no_errors
FAM113B	91523	broad.mit.edu	36	12	45916107	45916107	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	45916107	45916107	C	T	SNP	FAM113B	NM_138371	human	genbank	54_36p	1	predicted	missense	c.994	p.R332W	0.01	NULL	superfamily_SGNH hydrolase	-	no_errors
FAM113B	91523	broad.mit.edu	36	12	45916217	45916217	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	45916217	45916217	C	T	SNP	FAM113B	ENST00000330951	human	ensembl	54_36p	1	known	missense	c.635	p.S212L	0	NULL	NULL	-	no_errors
RPAP3	79657	broad.mit.edu	36	12	46377703	46377703	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	46377703	46377703	A	C	SNP	RPAP3	NM_024604	human	genbank	54_36p	-1	reviewed	missense	c.361	p.S121A	1	NULL	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	-	no_errors
ENDOU	8909	broad.mit.edu	36	12	46390931	46390931	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	46390931	46390931	C	T	SNP	P11	NM_006025	human	genbank	54_36p	-1	reviewed	missense	c.1031	p.R344Q	1	NULL	"HMMPfam_Somatomedin_B,HMMSmart_SO,superfamily_SSF90188,PatternScan_SMB_1,HMMPfam_XendoU"	-	no_errors
VDR	7421	broad.mit.edu	36	12	46537571	46537571	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	46537571	46537571	C	A	SNP	VDR	NM_000376	human	genbank	54_36p	-1	reviewed	missense	c.445	p.D149Y	0.98	superfamily_Nuclear receptor ligand-binding domain	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
VDR	7421	broad.mit.edu	36	12	46537578	46537578	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	46537578	46537578	G	C	SNP	VDR	NM_000376	human	genbank	54_36p	-1	reviewed	silent	c.438	p.T146	1	superfamily_Nuclear receptor ligand-binding domain	"HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
PFKM	5213	broad.mit.edu	36	12	46815382	46815382	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	46815382	46815382	C	G	SNP	PFKM	NM_000289	human	genbank	54_36p	1	validated	silent	c.885	p.V295	0.99	"HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE"	"HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE"	-	no_errors
H1FNT	341567	broad.mit.edu	36	12	47010040	47010040	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	47010040	47010040	G	A	SNP	H1FNT	NM_181788	human	genbank	54_36p	1	provisional	silent	c.699	p.K233	0.22	NULL	NULL	-	no_errors
ZNF641	121274	broad.mit.edu	36	12	47025406	47025406	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	47025406	47025406	A	G	SNP	ZNF641	NM_152320	human	genbank	54_36p	-1	provisional	missense	c.437	p.V146A	1	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CCNT1	904	broad.mit.edu	36	12	47374193	47374193	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	47374193	47374193	A	C	SNP	CCNT1	NM_001240	human	genbank	54_36p	-1	reviewed	silent	c.1071	p.L357	0.84	NULL	"PatternScan_CYCLINS,superfamily_Cyclin_like,HMMPfam_Cyclin_N,HMMSmart_CYCLIN"	-	no_errors
RND1	27289	broad.mit.edu	36	12	47541050	47541050	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	47541050	47541050	C	A	SNP	RND1	NM_014470	human	genbank	54_36p	-1	provisional	missense	c.450	p.E150D	1	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	"HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174"	-	no_errors
CCDC65	85478	broad.mit.edu	36	12	47601482	47601482	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	47601482	47601482	C	G	SNP	CCDC65	NM_033124	human	genbank	54_36p	1	validated	missense	c.1444	p.P482A	0	NULL	NULL	-	no_errors
MLL2	8085	broad.mit.edu	36	12	47718328	47718328	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	47718328	47718328	G	A	SNP	MLL2	NM_003482	human	genbank	54_36p	-1	validated	silent	c.9078	p.G3026	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MLL2	8085	broad.mit.edu	36	12	47723920	47723920	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	47723920	47723920	G	A	SNP	MLL2	NM_003482	human	genbank	54_36p	-1	validated	nonsense	c.5317	p.Q1773*	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DNAJC22	79962	broad.mit.edu	36	12	48029456	48029456	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	48029456	48029456	C	T	SNP	DNAJC22	NM_024902	human	genbank	54_36p	1	provisional	silent	c.534	p.L178	0.53	NULL	"PatternScan_DNAJ_1,superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ"	-	no_errors
FMNL3	91010	broad.mit.edu	36	12	48332205	48332205	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	48332205	48332205	T	C	SNP	FMNL3	NM_175736	human	genbank	54_36p	-1	validated	missense	c.1381	p.K461E	1	HMMPfam_Drf_FH3	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
BCDIN3D	144233	broad.mit.edu	36	12	48518700	48518700	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	48518700	48518700	C	-	DEL	BCDIN3D	NM_181708	human	genbank	54_36p	-1	provisional	frame_shift_del	c.600	p.W200fs	1	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Bin3"	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Bin3"	"(deletion:cds_exon[48518421,48519065])"	no_errors
AQP2	359	broad.mit.edu	36	12	48634705	48634705	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	48634705	48634705	A	T	SNP	AQP2	NM_000486	human	genbank	54_36p	1	reviewed	missense	c.551	p.N184I	1	"superfamily_MIP,HMMPfam_MIP"	"superfamily_MIP,HMMPfam_MIP,PatternScan_MIP"	-	no_errors
ACCN2	41	broad.mit.edu	36	12	48758091	48758091	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	48758091	48758091	A	T	SNP	ACCN2	NM_020039	human	genbank	54_36p	1	reviewed	missense	c.751	p.S251C	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
DIP2B	57609	broad.mit.edu	36	12	49355378	49355378	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	49355378	49355378	G	C	SNP	DIP2B	NM_173602	human	genbank	54_36p	1	validated	splice_site	c.797-1	e7-1	1	-	-	-	no_errors
DIP2B	57609	broad.mit.edu	36	12	49378405	49378405	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	49378405	49378405	A	G	SNP	DIP2B	NM_173602	human	genbank	54_36p	1	validated	silent	c.2076	p.P692	0.99	superfamily_Acetyl-CoA synthetase-like	"HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	-	no_errors
ATF1	466	broad.mit.edu	36	12	49499695	49499695	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	49499695	49499695	C	G	SNP	ATF1	NM_005171	human	genbank	54_36p	1	validated	missense	c.682	p.R228G	1	"HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	"HMMPfam_pKID,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1"	-	no_errors
TMPRSS12	283471	broad.mit.edu	36	12	49523911	49523911	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	49523911	49523911	T	A	SNP	TMPRSS12	NM_182559	human	genbank	54_36p	1	validated	silent	c.207	p.L69	0	superfamily_Trypsin-like serine proteases	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
TFCP2	7024	broad.mit.edu	36	12	49798741	49798741	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	49798741	49798741	T	A	SNP	TFCP2	NM_005653	human	genbank	54_36p	-1	provisional	missense	c.204	p.Q68H	1	HMMPfam_CP2	"HMMPfam_CP2,superfamily_SAM/Pointed domain"	-	no_errors
POU6F1	5463	broad.mit.edu	36	12	49870461	49870461	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	49870461	49870461	C	A	SNP	POU6F1	NM_002702	human	genbank	54_36p	-1	validated	missense	c.742	p.A248S	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
GALNT6	11226	broad.mit.edu	36	12	50034495	50034495	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	50034495	50034495	C	T	SNP	GALNT6	NM_007210	human	genbank	54_36p	-1	reviewed	missense	c.1804	p.D602N	0.11	"superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin"	"superfamily_SSF53448,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin"	-	no_errors
GALNT6	11226	broad.mit.edu	36	12	50039348	50039348	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	50039348	50039348	G	C	SNP	GALNT6	NM_007210	human	genbank	54_36p	-1	reviewed	silent	c.1203	p.P401	1	superfamily_SSF53448	"HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,superfamily_SSF53448"	-	no_errors
GALNT6	11226	broad.mit.edu	36	12	50059624	50059624	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	50059624	50059624	T	C	SNP	GALNT6	NM_007210	human	genbank	54_36p	-1	reviewed	missense	c.209	p.K70R	1	NULL	"HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,superfamily_SSF53448"	-	no_errors
SLC4A8	9498	broad.mit.edu	36	12	50143749	50143749	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	50143749	50143749	C	G	SNP	SLC4A8	NM_001039960	human	genbank	54_36p	1	validated	missense	c.1333	p.L445V	1	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp"	-	no_errors
SLC4A8	9498	broad.mit.edu	36	12	50154489	50154489	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	50154489	50154489	G	T	SNP	SLC4A8	NM_001039960	human	genbank	54_36p	1	validated	silent	c.2001	p.L667	0.98	HMMPfam_HCO3_cotransp	"HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein"	-	no_errors
SCN8A	6334	broad.mit.edu	36	12	50401812	50401812	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	50401812	50401812	C	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	nonsense	c.1851	p.Y617*	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_ODR_DC_2_1,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
SCN8A	6334	broad.mit.edu	36	12	50470514	50470514	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	50470514	50470514	G	C	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	silent	c.4485	p.L1495	1	NULL	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN8A	6334	broad.mit.edu	36	12	50486752	50486752	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	50486752	50486752	C	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.5215	p.P1739T	1	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN8A	6334	broad.mit.edu	36	12	50487072	50487072	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	50487072	50487072	G	A	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	silent	c.5535	p.L1845	1	NULL	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
SCN8A	6334	broad.mit.edu	36	12	50487199	50487199	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	50487199	50487199	A	T	SNP	SCN8A	NM_014191	human	genbank	54_36p	1	validated	missense	c.5662	p.T1888S	1	NULL	"HMMPfam_IQ,HMMSmart_SM00015,PatternScan_ODR_DC_2_1,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels"	-	no_errors
ACVR1B	91	broad.mit.edu	36	12	50664218	50664218	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	50664218	50664218	G	C	SNP	ACVR1B	NM_004302	human	genbank	54_36p	1	reviewed	splice_site	c.979+1	e5+1	1	-	-	-	no_errors
C12orf44	60673	broad.mit.edu	36	12	50753912	50753912	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	50753912	50753912	G	A	SNP	C12orf44	NM_001098673	human	genbank	54_36p	1	validated	missense	c.211	p.E71K	1	HMMPfam_DUF1649	HMMPfam_DUF1649	-	no_errors
KRT85	3891	broad.mit.edu	36	12	51047140	51047140	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51047140	51047140	G	A	SNP	KRT85	NM_002283	human	genbank	54_36p	-1	reviewed	missense	c.317	p.T106M	1	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT82	3888	broad.mit.edu	36	12	51083809	51083821	+	Frame_Shift_Del	DEL	ACGCGGTCCCCGG	-	ACGCGGTCCCCGG	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	ACGCGGTCCCCGG	ACGCGGTCCCCGG	-	-	ACGCGGTCCCCGG	ACGCGGTCCCCGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	51083809	51083821	ACGCGGTCCCCGG	-	DEL	KRT82	NM_033033	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.563_551	p.S184fs	0.003:0.003:0.003:0.153:0.233:0.240:0.901:0.906:0.496:0.540:0.465:0.305:0.685	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	"(deletion:cds_exon[51083752,51083960])"	no_errors
KRT6B	3854	broad.mit.edu	36	12	51129602	51129602	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51129602	51129602	C	G	SNP	KRT6B	NM_005555	human	genbank	54_36p	-1	reviewed	missense	c.995	p.S332T	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6B	3854	broad.mit.edu	36	12	51131927	51131927	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	51131927	51131927	T	C	SNP	KRT6B	NM_005555	human	genbank	54_36p	-1	reviewed	missense	c.203	p.K68R	0.97	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6C	3853	broad.mit.edu	36	12	51149845	51149845	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51149845	51149845	G	A	SNP	KRT6C	NM_173086	human	genbank	54_36p	-1	validated	silent	c.1300	p.L434	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6C	3853	broad.mit.edu	36	12	51151470	51151470	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51151470	51151470	A	G	SNP	KRT6C	NM_173086	human	genbank	54_36p	-1	validated	splice_site	c.912+2	e4+2	1	-	-	-	no_errors
KRT6C	3853	broad.mit.edu	36	12	51153609	51153609	+	Frame_Shift_Del	DEL	A	-	A	rs61740354	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	51153609	51153609	A	-	DEL	KRT6C	NM_173086	human	genbank	54_36p	-1	validated	frame_shift_del	c.180	p.L61fs	0.99	NULL	"HMMPfam_Filament,PatternScan_IF"	"(deletion:cds_exon[51153249,51153788])"	no_errors
KRT6A	3853	broad.mit.edu	36	12	51167847	51167847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51167847	51167847	C	A	SNP	KRT6A	NM_005554	human	genbank	54_36p	-1	reviewed	missense	c.1619	p.S540I	0.47	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT6A	3853	broad.mit.edu	36	12	51171200	51171200	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51171200	51171200	C	T	SNP	KRT6A	NM_005554	human	genbank	54_36p	-1	reviewed	missense	c.779	p.R260H	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT72	140807	broad.mit.edu	36	12	51267845	51267845	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51267845	51267845	T	G	SNP	KRT72	NM_080747	human	genbank	54_36p	-1	provisional	missense	c.1147	p.K383Q	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT72	140807	broad.mit.edu	36	12	51267860	51267860	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51267860	51267860	C	T	SNP	KRT72	NM_080747	human	genbank	54_36p	-1	provisional	missense	c.1132	p.G378R	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT72	140807	broad.mit.edu	36	12	51270960	51270960	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51270960	51270960	G	T	SNP	KRT72	NM_080747	human	genbank	54_36p	-1	provisional	missense	c.1016	p.T339N	0.29	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT72	140807	broad.mit.edu	36	12	51279125	51279125	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51279125	51279125	G	T	SNP	KRT72	NM_080747	human	genbank	54_36p	-1	provisional	silent	c.465	p.T155	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT73	319101	broad.mit.edu	36	12	51298331	51298331	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51298331	51298331	G	A	SNP	KRT73	NM_175068	human	genbank	54_36p	-1	provisional	missense	c.245	p.A82V	0.99	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT77	374454	broad.mit.edu	36	12	51372607	51372614	+	Frame_Shift_Del	DEL	AGGTCCTG	-	AGGTCCTG	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	AGGTCCTG	AGGTCCTG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	51372607	51372614	AGGTCCTG	-	DEL	KRT77	NM_175078	human	genbank	54_36p	-1	validated	frame_shift_del	c.1292_1285	p.Q429fs	0.992:0.933:0.874:0.889:0.861:0.205:0.230:0.254	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	"(deletion:cds_exon[51372472,51372692])"	no_errors
KRT4	3851	broad.mit.edu	36	12	51487870	51487870	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51487870	51487870	C	A	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	nonsense	c.1393	p.E465*	1	HMMPfam_Filament	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
KRT4	3851	broad.mit.edu	36	12	51493696	51493696	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51493696	51493696	G	A	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	silent	c.636	p.R212	0.25	HMMPfam_Filament	"superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT4	3851	broad.mit.edu	36	12	51494186	51494186	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	12	51494186	51494186	C	G	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	missense	c.146	p.R49P	0.06	NULL	"superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT79	338785	broad.mit.edu	36	12	51513997	51513997	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51513997	51513997	A	T	SNP	KRT79	NM_175834	human	genbank	54_36p	-1	validated	missense	c.315	p.F105L	0.08	NULL	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
KRT78	196374	broad.mit.edu	36	12	51524660	51524660	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51524660	51524660	C	A	SNP	KRT78	NM_173352	human	genbank	54_36p	-1	reviewed	nonsense	c.871	p.E291*	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT78	196374	broad.mit.edu	36	12	51528647	51528647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51528647	51528647	G	A	SNP	KRT78	NM_173352	human	genbank	54_36p	-1	reviewed	missense	c.335	p.T112I	1	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT8	3856	broad.mit.edu	36	12	51579919	51579919	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51579919	51579919	G	A	SNP	KRT8	NM_002273	human	genbank	54_36p	-1	reviewed	silent	c.888	p.H296	1	"HMMPfam_Filament,superfamily_Prefoldin"	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
SOAT2	8435	broad.mit.edu	36	12	51795457	51795457	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51795457	51795457	G	C	SNP	SOAT2	NM_003578	human	genbank	54_36p	1	reviewed	missense	c.460	p.D154H	1	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors
CSAD	51380	broad.mit.edu	36	12	51840202	51840202	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	51840202	51840202	G	A	SNP	CSAD	NM_015989	human	genbank	54_36p	-1	validated	missense	c.1135	p.R379W	0.79	"superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC"	"superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC"	-	no_errors
ITGB7	3695	broad.mit.edu	36	12	51876209	51876209	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51876209	51876209	G	A	SNP	ITGB7	NM_000889	human	genbank	54_36p	-1	provisional	silent	c.858	p.F286	1	"HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ITGB7	3695	broad.mit.edu	36	12	51877565	51877565	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51877565	51877565	C	T	SNP	ITGB7	NM_000889	human	genbank	54_36p	-1	provisional	missense	c.553	p.V185I	0.62	"HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ESPL1	9700	broad.mit.edu	36	12	51962339	51962339	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	51962339	51962339	C	T	SNP	ESPL1	NM_012291	human	genbank	54_36p	1	validated	silent	c.2644	p.L882	0.99	NULL	HMMPfam_Peptidase_C50	-	no_errors
ESPL1	9700	broad.mit.edu	36	12	51970987	51970987	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	51970987	51970987	C	G	SNP	ESPL1	NM_012291	human	genbank	54_36p	1	validated	silent	c.5460	p.S1820	0.8	HMMPfam_Peptidase_C50	HMMPfam_Peptidase_C50	-	no_errors
AAAS	8086	broad.mit.edu	36	12	51987696	51987696	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	51987696	51987696	G	A	SNP	AAAS	NM_015665	human	genbank	54_36p	-1	validated	silent	c.1485	p.S495	1	NULL	"HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
SP1	6667	broad.mit.edu	36	12	52086700	52086700	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	52086700	52086700	A	T	SNP	SP1	NM_138473	human	genbank	54_36p	1	validated	silent	c.1740	p.A580	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
MAP3K12	7786	broad.mit.edu	36	12	52162059	52162059	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	52162059	52162059	G	A	SNP	MAP3K12	NM_006301	human	genbank	54_36p	-1	reviewed	missense	c.2414	p.S805L	0.82	NULL	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ATP5G2	517	broad.mit.edu	36	12	52345445	52345445	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	52345445	52345445	C	T	SNP	ATP5G2	NM_005176	human	genbank	54_36p	-1	reviewed	missense	c.517	p.A173T	1	"superfamily_ATPase_F0/V0_c,HMMPfam_ATP-synt_C,PatternScan_ATPASE_C"	"superfamily_ATPase_F0/V0_c,HMMPfam_ATP-synt_C,PatternScan_ATPASE_C"	-	no_errors
CALCOCO1	57658	broad.mit.edu	36	12	52405214	52405214	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	52405214	52405214	T	C	SNP	CALCOCO1	NM_020898	human	genbank	54_36p	-1	validated	missense	c.80	p.N27S	1	HMMPfam_CALCOCO1	HMMPfam_CALCOCO1	-	no_errors
HOXC9	3225	broad.mit.edu	36	12	52682671	52682671	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	52682671	52682671	A	G	SNP	HOXC9	NM_006897	human	genbank	54_36p	1	reviewed	silent	c.729	p.R243	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	"HMMPfam_Hox9_act,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXC8	3224	broad.mit.edu	36	12	52691424	52691424	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	52691424	52691424	A	C	SNP	HOXC8	NM_022658	human	genbank	54_36p	1	reviewed	missense	c.721	p.K241Q	1	NULL	"superfamily_Homeodomain-like,PatternScan_ANTENNAPEDIA,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXC6	3223	broad.mit.edu	36	12	52708799	52708799	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	52708799	52708799	C	A	SNP	HOXC6	NM_004503	human	genbank	54_36p	1	reviewed	missense	c.227	p.S76Y	1	NULL	"PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HOXC6	3223	broad.mit.edu	36	12	52709744	52709744	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	52709744	52709744	A	C	SNP	HOXC6	NM_004503	human	genbank	54_36p	1	reviewed	missense	c.439	p.I147L	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
ZNF385A	25946	broad.mit.edu	36	12	53051593	53051593	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	53051593	53051593	G	A	SNP	ZNF385A	NM_015481	human	genbank	54_36p	-1	validated	missense	c.535	p.R179W	1	HMMSmart_SM00451	"HMMSmart_SM00451,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
NCKAP1L	3071	broad.mit.edu	36	12	53197611	53197611	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	53197611	53197611	T	C	SNP	NCKAP1L	NM_005337	human	genbank	54_36p	1	reviewed	missense	c.1123	p.F375L	1	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
PDE1B	5153	broad.mit.edu	36	12	53256677	53256677	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	53256677	53256677	G	A	SNP	PDE1B	NM_000924	human	genbank	54_36p	1	provisional	missense	c.1432	p.V478M	1	superfamily_SSF109604	"HMMPfam_PDEase_I_N,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
DCD	117159	broad.mit.edu	36	12	53324778	53324778	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	53324778	53324778	C	G	SNP	DCD	NM_053283	human	genbank	54_36p	-1	reviewed	missense	c.319	p.D107H	0	NULL	NULL	-	no_errors
NEUROD4	58158	broad.mit.edu	36	12	53706805	53706805	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	53706805	53706805	C	T	SNP	NEUROD4	NM_021191	human	genbank	54_36p	1	validated	silent	c.315	p.D105	0.97	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
OR10A7	121364	broad.mit.edu	36	12	53901776	53901776	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	53901776	53901776	G	T	SNP	OR10A7	NM_001005280	human	genbank	54_36p	1	provisional	missense	c.701	p.R234L	0.05	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR10A7	121364	broad.mit.edu	36	12	53901976	53901976	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	53901976	53901976	G	A	SNP	OR10A7	NM_001005280	human	genbank	54_36p	1	provisional	missense	c.901	p.V301I	0.07	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR6C1	390321	broad.mit.edu	36	12	54001088	54001088	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54001088	54001088	T	G	SNP	OR6C1	NM_001005182	human	genbank	54_36p	1	provisional	silent	c.438	p.S146	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR6C75	390323	broad.mit.edu	36	12	54045240	54045240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	54045240	54045240	A	G	SNP	OR6C75	NM_001005497	human	genbank	54_36p	1	provisional	missense	c.79	p.I27V	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ITGA7	3679	broad.mit.edu	36	12	54378838	54378838	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54378838	54378838	G	A	SNP	ITGA7	NM_002206	human	genbank	54_36p	-1	reviewed	silent	c.921	p.P307	0.95	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
GDF11	10220	broad.mit.edu	36	12	54423637	54423637	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	54423637	54423637	G	A	SNP	GDF11	NM_005811	human	genbank	54_36p	1	reviewed	silent	c.270	p.K90	1	HMMPfam_TGFb_propeptide	"HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
MMP19	4327	broad.mit.edu	36	12	54520789	54520801	+	Frame_Shift_Del	DEL	CCAGCCTGCACCT	-	CCAGCCTGCACCT	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	CCAGCCTGCACCT	CCAGCCTGCACCT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	54520789	54520801	CCAGCCTGCACCT	-	DEL	MMP19	NM_002429	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.449_437	p.E146fs	1.000:1.000:0.998:0.998:0.996:0.990:0.991:0.985:0.991:1.000:1.000:1.000:1.000	"HMMSmart_SM00235,HMMPfam_Peptidase_M10,superfamily_Metalloproteases (zincins) catalytic domain"	"superfamily_PGBD-like,HMMPfam_PG_binding_1,HMMSmart_SM00235,HMMPfam_Peptidase_M10,superfamily_Metalloproteases (zincins) catalytic domain,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120"	"(deletion:cds_exon[54520718,54520933])"	no_errors
DGKA	1606	broad.mit.edu	36	12	54632843	54632843	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	54632843	54632843	A	C	SNP	DGKA	NM_001345	human	genbank	54_36p	1	reviewed	missense	c.1802	p.N601T	1	"HMMPfam_DAGK_acc,HMMSmart_SM00045"	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
SILV	6490	broad.mit.edu	36	12	54646039	54646039	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54646039	54646039	G	C	SNP	SILV	NM_006928	human	genbank	54_36p	-1	validated	missense	c.24	p.C8W	0.32	NULL	"superfamily_PKD domain,HMMPfam_PKD,HMMSmart_SM00089"	-	no_errors
ERBB3	2065	broad.mit.edu	36	12	54763866	54763866	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	54763866	54763866	G	T	SNP	ERBB3	NM_001982	human	genbank	54_36p	1	reviewed	silent	c.147	p.L49	0.44	superfamily_L domain-like	"superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	-	no_errors
ESYT1	23344	broad.mit.edu	36	12	54817331	54817331	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	54817331	54817331	G	C	SNP	FAM62A	NM_015292	human	genbank	54_36p	1	provisional	missense	c.1845	p.W615C	0	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ESYT1	23344	broad.mit.edu	36	12	54817624	54817624	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54817624	54817624	G	A	SNP	FAM62A	NM_015292	human	genbank	54_36p	1	provisional	silent	c.2013	p.K671	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
ESYT1	23344	broad.mit.edu	36	12	54818532	54818532	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54818532	54818532	G	A	SNP	FAM62A	NM_015292	human	genbank	54_36p	1	provisional	silent	c.2415	p.E805	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
MYL6	4637	broad.mit.edu	36	12	54839636	54839636	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54839636	54839636	A	G	SNP	MYL6	NM_021019	human	genbank	54_36p	1	reviewed	splice_site	c.32-2	e3-2	1	-	-	-	no_errors
SMARCC2	6601	broad.mit.edu	36	12	54854765	54854765	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54854765	54854765	T	A	SNP	SMARCC2	NM_003075	human	genbank	54_36p	-1	reviewed	missense	c.1433	p.Q478L	1	HMMPfam_SWIRM	"superfamily_BRCT domain,HMMSmart_SM00298,HMMPfam_SWIRM,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
OBFC2B	79035	broad.mit.edu	36	12	54909127	54909127	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54909127	54909127	C	A	SNP	OBFC2B	NM_024068	human	genbank	54_36p	1	validated	missense	c.499	p.P167T	0.91	NULL	"superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti"	-	no_errors
SLC39A5	283375	broad.mit.edu	36	12	54916704	54916704	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54916704	54916704	G	A	SNP	SLC39A5	NM_173596	human	genbank	54_36p	1	validated	missense	c.1111	p.G371S	0.99	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
ANKRD52	283373	broad.mit.edu	36	12	54934255	54934255	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54934255	54934255	C	G	SNP	ANKRD52	NM_173595	human	genbank	54_36p	-1	validated	missense	c.769	p.E257Q	1	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	-	no_errors
COQ10A	93058	broad.mit.edu	36	12	54947934	54947934	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	54947934	54947934	G	C	SNP	COQ10A	NM_144576	human	genbank	54_36p	1	validated	missense	c.224	p.G75A	1	NULL	HMMPfam_Polyketide_cyc	-	no_errors
CS	1431	broad.mit.edu	36	12	54953669	54953669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	54953669	54953669	T	C	SNP	CS	NM_004077	human	genbank	54_36p	-1	reviewed	missense	c.1199	p.N400S	1	"superfamily_Citrate_synthase_core,HMMPfam_Citrate_synt"	"superfamily_Citrate_synthase_core,HMMPfam_Citrate_synt,PatternScan_CITRATE_SYNTHASE"	-	no_errors
PAN2	9924	broad.mit.edu	36	12	55003406	55003406	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55003406	55003406	G	T	SNP	PAN2	NM_014871	human	genbank	54_36p	-1	validated	missense	c.2301	p.H767Q	0.01	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_WD40 repeat-like,superfamily_Cysteine proteinases,HMMPfam_UCH,superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T"	-	no_errors
TIMELESS	8914	broad.mit.edu	36	12	55103349	55103349	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55103349	55103349	A	G	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	silent	c.2268	p.S756	0.98	HMMPfam_TIMELESS_C	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
TIMELESS	8914	broad.mit.edu	36	12	55103642	55103642	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55103642	55103642	G	A	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	silent	c.2083	p.L695	1	NULL	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
TIMELESS	8914	broad.mit.edu	36	12	55111012	55111012	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	55111012	55111012	G	T	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	silent	c.829	p.R277	1	HMMPfam_TIMELESS	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
TIMELESS	8914	broad.mit.edu	36	12	55113888	55113888	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	55113888	55113888	T	A	SNP	TIMELESS	NM_003920	human	genbank	54_36p	-1	validated	missense	c.187	p.S63C	1	HMMPfam_TIMELESS	"HMMPfam_TIMELESS,HMMPfam_TIMELESS_C"	-	no_errors
SPRYD4	283377	broad.mit.edu	36	12	55149488	55149488	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	55149488	55149488	C	A	SNP	SPRYD4	NM_207344	human	genbank	54_36p	1	validated	missense	c.484	p.L162M	1	"HMMPfam_SPRY,HMMSmart_SM00449"	"HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
NACA	4666	broad.mit.edu	36	12	55394411	55394411	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	55394411	55394411	A	T	SNP	NACA	NM_005594	human	genbank	54_36p	-1	validated	splice_site	c.234+2	e3+2	1	-	-	-	no_errors
NACA	4666	broad.mit.edu	36	12	55398181	55398181	+	Intron	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55398181	55398181	G	A	SNP	NACA	NM_005594	human	genbank	54_36p	-1	validated	intronic	c.71-3443	e2-3443	0	-	-	-	no_errors
NACA	4666	broad.mit.edu	36	12	55401441	55401441	+	Intron	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55401441	55401441	G	T	SNP	NACA	NM_005594	human	genbank	54_36p	-1	validated	intronic	c.70+3062	e1+3062	0.01	-	-	-	no_errors
TAC3	6866	broad.mit.edu	36	12	55693716	55693716	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55693716	55693716	G	T	SNP	TAC3	NM_013251	human	genbank	54_36p	-1	validated	missense	c.121	p.P41T	0	HMMPfam_Neurokinin_B	"HMMPfam_Neurokinin_B,PatternScan_TACHYKININ"	-	no_errors
STAT6	6778	broad.mit.edu	36	12	55787774	55787774	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	12	55787774	55787774	C	T	SNP	STAT6	NM_003153	human	genbank	54_36p	-1	reviewed	missense	c.136	p.D46N	0.5	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int"	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,HMMPfam_STAT_alpha,superfamily_STAT,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2,HMMSmart_SM00252"	-	no_errors
STAT6	6778	broad.mit.edu	36	12	55788296	55788296	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	55788296	55788296	G	A	SNP	STAT6	NM_003153	human	genbank	54_36p	-1	reviewed	silent	c.33	p.P11	1	"HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain"	"HMMPfam_SH2,HMMSmart_SM00252,superfamily_p53-like transcription factors,HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_STAT,superfamily_SH2 domain"	-	no_errors
STAT6	6778	broad.mit.edu	36	12	55788308	55788308	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55788308	55788308	G	A	SNP	STAT6	NM_003153	human	genbank	54_36p	-1	reviewed	silent	c.21	p.V7	1	"HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain"	"HMMPfam_SH2,HMMSmart_SM00252,superfamily_p53-like transcription factors,HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_STAT,superfamily_SH2 domain"	-	no_errors
LRP1	4035	broad.mit.edu	36	12	55874041	55874041	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55874041	55874041	G	A	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.7897	p.A2633T	1	"superfamily_YWTD domain,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1"	###############################################################################################################################################################################################################################################################	-	no_errors
LRP1	4035	broad.mit.edu	36	12	55884553	55884553	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	55884553	55884553	A	G	SNP	LRP1	NM_002332	human	genbank	54_36p	1	validated	missense	c.11045	p.N3682S	1	"HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module"	###############################################################################################################################################################################################################################################################	-	no_errors
SHMT2	6472	broad.mit.edu	36	12	55913664	55913664	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	55913664	55913664	C	T	SNP	SHMT2	NM_005412	human	genbank	54_36p	1	provisional	missense	c.1075	p.R359W	1	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_SHMT"	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_SHMT,PatternScan_SHMT"	-	no_errors
R3HDM2	22864	broad.mit.edu	36	12	55934959	55934959	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	55934959	55934959	A	C	SNP	R3HDM2	NM_014925	human	genbank	54_36p	-1	validated	missense	c.1778	p.I593S	1	NULL	NULL	-	no_errors
GLI1	2735	broad.mit.edu	36	12	56150731	56150731	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	56150731	56150731	C	A	SNP	GLI1	NM_005269	human	genbank	54_36p	1	reviewed	missense	c.1941	p.D647E	0.65	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARHGAP9	64333	broad.mit.edu	36	12	56159424	56159424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	56159424	56159424	C	A	SNP	ARHGAP9	NM_032496	human	genbank	54_36p	-1	reviewed	missense	c.33	p.W11C	0.93	NULL	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_WW_Rsp5_WWP,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
MARS	4141	broad.mit.edu	36	12	56178523	56178523	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	56178523	56178523	A	G	SNP	MARS	NM_004990	human	genbank	54_36p	1	reviewed	missense	c.941	p.Y314C	1	"superfamily_SSF52374,HMMPfam_tRNA-synt_1g"	"superfamily_GST_C_like,HMMPfam_GST_C,superfamily_SSF52374,HMMPfam_tRNA-synt_1g,PatternScan_AA_TRNA_LIGASE_I,superfamily_SSF57770,superfamily_tRNAsyn_1a_bind,superfamily_S15/NS1_bind,HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1"	-	no_errors
DDIT3	1649	broad.mit.edu	36	12	56197383	56197383	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	56197383	56197383	A	C	SNP	DDIT3	NM_004083	human	genbank	54_36p	-1	validated	missense	c.74	p.L25R	1	NULL	"HMMSmart_SM00338,HMMPfam_bZIP_2"	-	no_errors
MBD6	114785	broad.mit.edu	36	12	56206062	56206062	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	56206062	56206062	C	G	SNP	MBD6	NM_052897	human	genbank	54_36p	1	validated	silent	c.1044	p.A348	1	NULL	HMMPfam_MBD	-	no_errors
DCTN2	10540	broad.mit.edu	36	12	56212815	56212815	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	56212815	56212815	C	T	SNP	DCTN2	NM_006400	human	genbank	54_36p	-1	reviewed	missense	c.835	p.A279T	1	HMMPfam_Dynamitin	HMMPfam_Dynamitin	-	no_errors
DCTN2	10540	broad.mit.edu	36	12	56215838	56215838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	56215838	56215838	C	G	SNP	DCTN2	NM_006400	human	genbank	54_36p	-1	reviewed	missense	c.178	p.D60H	1	HMMPfam_Dynamitin	HMMPfam_Dynamitin	-	no_errors
KIF5A	3798	broad.mit.edu	36	12	56249080	56249080	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	56249080	56249080	C	T	SNP	KIF5A	NM_004984	human	genbank	54_36p	1	reviewed	missense	c.782	p.A261V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_Prefoldin"	-	no_errors
OS9	10956	broad.mit.edu	36	12	56398319	56398319	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	56398319	56398319	G	C	SNP	OS9	NM_006812	human	genbank	54_36p	1	reviewed	missense	c.1258	p.D420H	0.03	NULL	"HMMPfam_PRKCSH,superfamily_Mannose 6-phosphate receptor domain"	-	no_errors
XRCC6BP1	91419	broad.mit.edu	36	12	56627075	56627075	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	56627075	56627075	C	T	SNP	XRCC6BP1	NM_033276	human	genbank	54_36p	1	provisional	silent	c.264	p.C88	1	HMMPfam_Peptidase_M76	"HMMPfam_Peptidase_M76,PatternScan_ZINC_PROTEASE"	-	no_errors
SLC16A7	9194	broad.mit.edu	36	12	58455155	58455155	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	58455155	58455155	A	G	SNP	SLC16A7	NM_004731	human	genbank	54_36p	1	provisional	missense	c.812	p.Y271C	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
USP15	9958	broad.mit.edu	36	12	60994859	60994859	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	60994859	60994859	G	T	SNP	USP15	NM_006313	human	genbank	54_36p	1	provisional	missense	c.370	p.V124L	1	HMMPfam_DUF1055	"HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,PatternScan_UCH_2_2"	-	no_errors
USP15	9958	broad.mit.edu	36	12	61071288	61071288	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	61071288	61071288	A	C	SNP	USP15	NM_006313	human	genbank	54_36p	1	provisional	missense	c.1958	p.D653A	1	"HMMPfam_UCH,superfamily_SSF54001"	"HMMPfam_UCH,HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001"	-	no_errors
MON2	23041	broad.mit.edu	36	12	61258508	61258508	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	61258508	61258508	C	A	SNP	MON2	NM_015026	human	genbank	54_36p	1	validated	missense	c.4531	p.L1511I	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_DUF1981"	-	no_errors
DPY19L2	283417	broad.mit.edu	36	12	62348317	62348317	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	62348317	62348317	G	C	SNP	DPY19L2	NM_173812	human	genbank	54_36p	-1	validated	missense	c.124	p.L42V	0	NULL	HMMPfam_DUF2211	-	no_errors
SRGAP1	57522	broad.mit.edu	36	12	62808180	62808180	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	62808180	62808180	C	G	SNP	SRGAP1	NM_020762	human	genbank	54_36p	1	validated	missense	c.2813	p.S938C	1	NULL	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
C12orf66	144577	broad.mit.edu	36	12	62895970	62895970	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	62895970	62895970	G	A	SNP	C12orf66	NM_152440	human	genbank	54_36p	-1	validated	silent	c.276	p.T92	1	HMMPfam_DUF2003	HMMPfam_DUF2003	-	no_errors
C12orf56	115749	broad.mit.edu	36	12	62955010	62955010	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	62955010	62955010	A	C	SNP	C12orf56	NM_001099676	human	genbank	54_36p	-1	validated	missense	c.1042	p.L348V	1	NULL	NULL	-	no_errors
XPOT	11260	broad.mit.edu	36	12	63100528	63100528	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	63100528	63100528	G	C	SNP	XPOT	NM_007235	human	genbank	54_36p	1	reviewed	missense	c.803	p.C268S	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_Xpo1"	-	no_errors
XPOT	11260	broad.mit.edu	36	12	63110318	63110318	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	63110318	63110318	G	A	SNP	XPOT	NM_007235	human	genbank	54_36p	1	reviewed	missense	c.1960	p.A654T	1	superfamily_ARM-type_fold	"HMMPfam_Xpo1,superfamily_ARM-type_fold"	-	no_errors
XPOT	11260	broad.mit.edu	36	12	63113523	63113523	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	63113523	63113523	G	C	SNP	XPOT	NM_007235	human	genbank	54_36p	1	reviewed	silent	c.2325	p.V775	0.29	superfamily_ARM-type_fold	"HMMPfam_Xpo1,superfamily_ARM-type_fold"	-	no_errors
WIF1	11197	broad.mit.edu	36	12	63757792	63757792	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	63757792	63757792	C	T	SNP	WIF1	NM_007191	human	genbank	54_36p	-1	reviewed	splice_site	c.397+1	e3+1	1	-	-	-	no_errors
WIF1	11197	broad.mit.edu	36	12	63800463	63800463	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	63800463	63800463	C	G	SNP	WIF1	NM_007191	human	genbank	54_36p	-1	reviewed	splice_site	c.288+1	e2+1	1	-	-	-	no_errors
LEMD3	23592	broad.mit.edu	36	12	63849783	63849783	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	63849783	63849783	G	A	SNP	LEMD3	NM_014319	human	genbank	54_36p	1	validated	missense	c.140	p.R47Q	1	"HMMPfam_LEM,HMMSmart_LEM,superfamily_LEM_like"	"HMMPfam_LEM,HMMSmart_LEM,superfamily_LEM_like,HMMPfam_MAN1_C,superfamily_SSF54928"	-	no_errors
GRIP1	23426	broad.mit.edu	36	12	65135508	65135508	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	65135508	65135508	T	A	SNP	GRIP1	NM_021150	human	genbank	54_36p	-1	validated	silent	c.1146	p.P382	0.9	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
DYRK2	8445	broad.mit.edu	36	12	66337947	66337947	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	66337947	66337947	G	A	SNP	DYRK2	NM_006482	human	genbank	54_36p	1	reviewed	silent	c.993	p.S331	0.91	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MDM1	56890	broad.mit.edu	36	12	66977002	66977002	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	66977002	66977002	T	A	SNP	MDM1	NM_017440	human	genbank	54_36p	-1	reviewed	missense	c.2000	p.Q667L	0.84	NULL	NULL	-	no_errors
MDM1	56890	broad.mit.edu	36	12	66982832	66982832	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	66982832	66982832	C	A	SNP	MDM1	NM_017440	human	genbank	54_36p	-1	reviewed	missense	c.1807	p.D603Y	0	NULL	NULL	-	no_errors
PTPRB	5787	broad.mit.edu	36	12	69315912	69315912	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	69315912	69315912	C	T	SNP	PTPRB	NM_001109754	human	genbank	54_36p	-1	reviewed	missense	c.257	p.R86H	0	"superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin"	###############################################################################################################################################################################################################################################################	-	no_errors
ZFC3H1	196441	broad.mit.edu	36	12	70299415	70299415	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	70299415	70299415	A	C	SNP	ZFC3H1	NM_144982	human	genbank	54_36p	-1	validated	missense	c.5091	p.I1697M	1	NULL	"HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase,HMMSmart_SM00386"	-	no_errors
TPH2	121278	broad.mit.edu	36	12	70621660	70621660	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	70621660	70621660	C	T	SNP	TPH2	NM_173353	human	genbank	54_36p	1	reviewed	silent	c.135	p.D45	0.98	NULL	"superfamily_SSF55021,HMMPfam_ACT,superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL"	-	no_errors
TPH2	121278	broad.mit.edu	36	12	70674491	70674491	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	12	70674491	70674491	C	G	SNP	TPH2	NM_173353	human	genbank	54_36p	1	reviewed	missense	c.947	p.T316R	1	"PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase"	"HMMPfam_ACT,PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase,superfamily_SSF55021"	-	no_errors
TRHDE	29953	broad.mit.edu	36	12	71179595	71179595	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	71179595	71179595	C	T	SNP	TRHDE	NM_013381	human	genbank	54_36p	1	reviewed	silent	c.1500	p.D500	0.94	"HMMPfam_Peptidase_M1,superfamily_SSF55486"	"superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE"	-	no_errors
TRHDE	29953	broad.mit.edu	36	12	71179671	71179671	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	71179671	71179671	G	A	SNP	TRHDE	NM_013381	human	genbank	54_36p	1	reviewed	missense	c.1576	p.A526T	1	"HMMPfam_Peptidase_M1,superfamily_SSF55486"	"PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_SSF55486,superfamily_SSF63737"	-	no_errors
KCNC2	3747	broad.mit.edu	36	12	73887921	73887921	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	73887921	73887921	A	G	SNP	KCNC2	NM_139137	human	genbank	54_36p	-1	reviewed	missense	c.110	p.L37P	1	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra"	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
CAPS2	84698	broad.mit.edu	36	12	73973365	73973365	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	73973365	73973365	C	A	SNP	CAPS2	NM_032606	human	genbank	54_36p	-1	validated	missense	c.455	p.S152I	0.94	NULL	"superfamily_SSF47473,HMMSmart_EFh"	-	no_errors
GLIPR1L2	144321	broad.mit.edu	36	12	74090508	74090508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	74090508	74090508	G	C	SNP	GLIPR1L2	NM_152436	human	genbank	54_36p	1	provisional	missense	c.262	p.A88P	1	"superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP"	"superfamily_SCP-like_extracellular,HMMSmart_SCP,HMMPfam_SCP"	-	no_errors
GLIPR1L2	144321	broad.mit.edu	36	12	74102998	74102998	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	74102998	74102998	G	A	SNP	GLIPR1L2	NM_152436	human	genbank	54_36p	1	provisional	missense	c.632	p.R211Q	0	NULL	"HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular"	-	no_errors
OSBPL8	114882	broad.mit.edu	36	12	75315633	75315633	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	75315633	75315633	G	T	SNP	OSBPL8	NM_020841	human	genbank	54_36p	-1	reviewed	missense	c.644	p.P215H	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
E2F7	144455	broad.mit.edu	36	12	75947794	75947794	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	75947794	75947794	T	A	SNP	E2F7	NM_203394	human	genbank	54_36p	-1	validated	missense	c.1832	p.K611I	0.77	NULL	"superfamily_Winged helix DNA-binding domain,HMMPfam_E2F_TDP"	-	no_errors
E2F7	144455	broad.mit.edu	36	12	75947850	75947850	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	75947850	75947850	A	T	SNP	E2F7	NM_203394	human	genbank	54_36p	-1	validated	silent	c.1776	p.A592	0.7	NULL	"HMMPfam_E2F_TDP,superfamily_Winged helix DNA-binding domain"	-	no_errors
NAV3	89795	broad.mit.edu	36	12	77037611	77037611	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	77037611	77037611	C	G	SNP	NAV3	NM_014903	human	genbank	54_36p	1	validated	missense	c.3504	p.S1168R	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	-	no_errors
NAV3	89795	broad.mit.edu	36	12	77040179	77040179	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	77040179	77040179	A	T	SNP	NAV3	NM_014903	human	genbank	54_36p	1	validated	missense	c.4078	p.T1360S	1	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PAWR	5074	broad.mit.edu	36	12	78607731	78607731	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	78607731	78607731	G	T	SNP	PAWR	NM_002583	human	genbank	54_36p	-1	reviewed	missense	c.425	p.P142H	1	NULL	NULL	-	no_errors
PPP1R12A	4659	broad.mit.edu	36	12	78723566	78723566	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	78723566	78723566	G	C	SNP	PPP1R12A	NM_002480	human	genbank	54_36p	-1	reviewed	missense	c.1937	p.T646R	1	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
MYF5	4617	broad.mit.edu	36	12	79635167	79635167	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	79635167	79635167	G	T	SNP	MYF5	NM_005593	human	genbank	54_36p	1	validated	missense	c.194	p.G65V	1	"HMMPfam_Basic,HMMSmart_BASIC"	"HMMPfam_Basic,HMMSmart_BASIC,superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
LIN7A	8825	broad.mit.edu	36	12	79729529	79729529	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	79729529	79729529	T	C	SNP	LIN7A	NM_004664	human	genbank	54_36p	-1	validated	missense	c.548	p.K183R	1	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	"HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
PPFIA2	8499	broad.mit.edu	36	12	80195231	80195231	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	80195231	80195231	T	A	SNP	PPFIA2	NM_003625	human	genbank	54_36p	-1	reviewed	silent	c.3306	p.I1102	1	superfamily_SAM/Pointed domain	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2"	-	no_errors
TMTC2	160335	broad.mit.edu	36	12	81883627	81883627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	81883627	81883627	G	T	SNP	TMTC2	NM_152588	human	genbank	54_36p	1	provisional	missense	c.1842	p.K614N	1	"superfamily_TPR-like,HMMPfam_TPR_2,HMMSmart_SM00028"	"HMMPfam_DUF1736,superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
TSPAN19	144448	broad.mit.edu	36	12	83941283	83941283	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	83941283	83941283	A	G	SNP	TSPAN19	NM_001100917	human	genbank	54_36p	-1	validated	silent	c.291	p.F97	0	HMMPfam_Tetraspannin	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	-	no_errors
LRRIQ1	84125	broad.mit.edu	36	12	83973687	83973687	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	83973687	83973687	C	T	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	nonsense	c.985	p.R329*	0.51	superfamily_RNI-like	"superfamily_RNI-like,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LRRIQ1	84125	broad.mit.edu	36	12	84024434	84024434	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	84024434	84024434	T	C	SNP	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	missense	c.3287	p.L1096P	1	"HMMSmart_SM00369,superfamily_RNI-like"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
LRRIQ1	84125	broad.mit.edu	36	12	84042003	84042003	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	84042003	84042003	A	-	DEL	LRRIQ1	NM_001079910	human	genbank	54_36p	1	validated	frame_shift_del	c.3582	p.E1195fs	0.07	NULL	"superfamily_RNI-like,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"(deletion:cds_exon[84041979,84042428])"	no_errors
ALX1	8092	broad.mit.edu	36	12	84204851	84204851	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	84204851	84204851	T	A	SNP	ALX1	NM_006982	human	genbank	54_36p	1	reviewed	nonsense	c.621	p.Y207*	1	NULL	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR"	-	no_errors
MGAT4C	25834	broad.mit.edu	36	12	84898326	84898326	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	84898326	84898326	A	C	SNP	MGAT4C	NM_013244	human	genbank	54_36p	-1	validated	missense	c.309	p.I103M	1	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
MGAT4C	25834	broad.mit.edu	36	12	84901508	84901508	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	84901508	84901508	G	A	SNP	MGAT4C	NM_013244	human	genbank	54_36p	-1	validated	silent	c.219	p.F73	1	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
C12orf50	160419	broad.mit.edu	36	12	86916075	86916075	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	86916075	86916075	G	A	SNP	C12orf50	NM_152589	human	genbank	54_36p	-1	predicted	nonsense	c.157	p.Q53*	1	NULL	NULL	-	no_errors
C12orf29	91298	broad.mit.edu	36	12	86963564	86963564	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	86963564	86963564	G	A	SNP	C12orf29	NM_001009894	human	genbank	54_36p	1	validated	missense	c.496	p.A166T	1	NULL	NULL	-	no_errors
CEP290	80184	broad.mit.edu	36	12	86989785	86989785	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	86989785	86989785	G	C	SNP	CEP290	NM_025114	human	genbank	54_36p	-1	reviewed	missense	c.5759	p.A1920G	0.99	NULL	NULL	-	no_errors
KITLG	4254	broad.mit.edu	36	12	87436769	87436769	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	87436769	87436769	G	A	SNP	KITLG	NM_000899	human	genbank	54_36p	-1	reviewed	missense	c.199	p.H67Y	1	"HMMPfam_SCF,superfamily_4-helical cytokines"	"HMMPfam_SCF,superfamily_4-helical cytokines"	-	no_errors
POC1B	282809	broad.mit.edu	36	12	88388362	88388362	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	88388362	88388362	C	T	SNP	WDR51B	NM_172240	human	genbank	54_36p	-1	provisional	silent	c.717	p.S239	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
GALNT4	8693	broad.mit.edu	36	12	88442087	88442087	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	88442087	88442087	C	G	SNP	GALNT4	NM_003774	human	genbank	54_36p	-1	reviewed	missense	c.371	p.C124S	0.99	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458"	-	no_errors
ATP2B1	490	broad.mit.edu	36	12	88521684	88521684	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	88521684	88521684	C	G	SNP	ATP2B1	NM_001682	human	genbank	54_36p	-1	reviewed	missense	c.2784	p.M928I	1	"superfamily_SSF81665,HMMPfam_Cation_ATPase_C"	"HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C"	-	no_errors
CLLU1	574028	broad.mit.edu	36	12	91342744	91342744	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	91342744	91342744	T	G	SNP	CLLU1	NM_001025233	human	genbank	54_36p	1	provisional	missense	c.157	p.S53A	0.32	NULL	NULL	-	no_errors
PLEKHG7	440107	broad.mit.edu	36	12	91672073	91672073	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	91672073	91672073	G	A	SNP	PLEKHG7	NM_001004330	human	genbank	54_36p	1	validated	missense	c.392	p.R131Q	0.99	"superfamily_DH-domain,HMMPfam_RhoGEF"	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
EEA1	8411	broad.mit.edu	36	12	91716817	91716817	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	91716817	91716817	T	C	SNP	EEA1	NM_003566	human	genbank	54_36p	-1	validated	silent	c.2949	p.K983	0.1	NULL	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE"	-	no_errors
SOCS2	8835	broad.mit.edu	36	12	92492704	92492704	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	92492704	92492704	T	A	SNP	SOCS2	NM_003877	human	genbank	54_36p	1	reviewed	missense	c.215	p.I72N	1	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00253,HMMPfam_SOCS_box"	-	no_errors
TMCC3	57458	broad.mit.edu	36	12	93499754	93499754	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	93499754	93499754	C	T	SNP	TMCC3	NM_020698	human	genbank	54_36p	-1	validated	missense	c.770	p.C257Y	1	HMMPfam_Tmemb_cc2	HMMPfam_Tmemb_cc2	-	no_errors
FGD6	55785	broad.mit.edu	36	12	94128424	94128424	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	94128424	94128424	C	A	SNP	FGD6	NM_018351	human	genbank	54_36p	-1	validated	missense	c.767	p.C256F	0.1	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
USP44	84101	broad.mit.edu	36	12	94436201	94436218	+	In_Frame_Del	DEL	TGCATACTTCATCCATAG	-	TGCATACTTCATCCATAG	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	TGCATACTTCATCCATAG	TGCATACTTCATCCATAG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	94436201	94436218	TGCATACTTCATCCATAG	-	DEL	USP44	NM_001042403	human	genbank	54_36p	-1	validated	in_frame_del	c.1999_1982	p.TMDEVC661in_frame_del	1.000:1.000:1.000:0.999:0.918:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:0.999:1.000	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	"(deletion:cds_exon[94436061,94436260])"	no_errors
NTN4	59277	broad.mit.edu	36	12	94628389	94628389	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	94628389	94628389	C	T	SNP	NTN4	NM_021229	human	genbank	54_36p	-1	validated	missense	c.1141	p.D381N	1	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1"	"HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR"	-	no_errors
AMDHD1	144193	broad.mit.edu	36	12	94880356	94880356	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	94880356	94880356	C	T	SNP	AMDHD1	NM_152435	human	genbank	54_36p	1	validated	silent	c.906	p.A302	0.81	"superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases"	"HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases"	-	no_errors
ELK3	2004	broad.mit.edu	36	12	95164977	95164977	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	95164977	95164977	C	T	SNP	ELK3	NM_005230	human	genbank	54_36p	1	reviewed	silent	c.336	p.C112	0.97	superfamily_Winged helix DNA-binding domain	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
CDK17	5128	broad.mit.edu	36	12	95207165	95207165	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	95207165	95207165	C	G	SNP	PCTK2	NM_002595	human	genbank	54_36p	-1	reviewed	missense	c.1029	p.K343N	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CDK17	5128	broad.mit.edu	36	12	95212971	95212971	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	95212971	95212971	G	C	SNP	PCTK2	NM_002595	human	genbank	54_36p	-1	reviewed	missense	c.934	p.R312G	1	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CDK17	5128	broad.mit.edu	36	12	95241885	95241885	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	12	95241885	95241885	C	T	SNP	PCTK2	NM_002595	human	genbank	54_36p	-1	reviewed	missense	c.255	p.M85I	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
TMPO	7112	broad.mit.edu	36	12	97451652	97451652	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	97451652	97451652	G	T	SNP	TMPO	NM_003276	human	genbank	54_36p	1	provisional	nonsense	c.1486	p.E496*	1	NULL	"HMMPfam_Thymopoietin,superfamily_LEM domain,HMMPfam_LEM,HMMSmart_SM00540"	-	no_errors
APAF1	317	broad.mit.edu	36	12	97567504	97567504	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	12	97567504	97567504	A	T	SNP	APAF1	NM_181861	human	genbank	54_36p	1	reviewed	missense	c.437	p.E146V	0.99	"superfamily_WD40 repeat-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NB-ARC"	"superfamily_WD40 repeat-like,HMMPfam_CARD,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NB-ARC,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
UHRF1BP1L	23074	broad.mit.edu	36	12	99021836	99021836	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	99021836	99021836	G	A	SNP	UHRF1BP1L	NM_015054	human	genbank	54_36p	-1	validated	missense	c.232	p.H78Y	1	NULL	NULL	-	no_errors
ACTR6	64431	broad.mit.edu	36	12	99122956	99122956	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	99122956	99122956	C	A	SNP	ACTR6	NM_022496	human	genbank	54_36p	1	validated	missense	c.176	p.P59H	1	"superfamily_Actin-like ATPase domain,HMMSmart_SM00268,HMMPfam_Actin"	"superfamily_Actin-like ATPase domain,HMMSmart_SM00268,HMMPfam_Actin"	-	no_errors
ACTR6	64431	broad.mit.edu	36	12	99136382	99136382	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	99136382	99136382	T	G	SNP	ACTR6	NM_022496	human	genbank	54_36p	1	validated	missense	c.809	p.L270W	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	-	no_errors
SCYL2	55681	broad.mit.edu	36	12	99244535	99244535	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	99244535	99244535	G	A	SNP	SCYL2	NM_017988	human	genbank	54_36p	1	provisional	missense	c.1514	p.R505H	1	superfamily_ARM repeat	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_ARM repeat"	-	no_errors
SLC17A8	246213	broad.mit.edu	36	12	99320298	99320298	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	99320298	99320298	G	T	SNP	SLC17A8	NM_139319	human	genbank	54_36p	1	validated	missense	c.813	p.E271D	1	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
NR1H4	9971	broad.mit.edu	36	12	99428782	99428783	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	99428782	99428783	CC	AA	DNP	NR1H4	NM_005123	human	genbank	54_36p	1	provisional	missense	c.175_176	p.P59K	0.999:0.988	NULL	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
ANO4	121601	broad.mit.edu	36	12	100014529	100014529	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	100014529	100014529	C	T	SNP	ANO4	NM_178826	human	genbank	54_36p	1	validated	missense	c.1718	p.T573I	1	NULL	HMMPfam_DUF590	-	no_errors
UTP20	27340	broad.mit.edu	36	12	100208167	100208167	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	100208167	100208167	A	T	SNP	UTP20	NM_014503	human	genbank	54_36p	1	validated	missense	c.719	p.H240L	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_DRIM"	-	no_errors
UTP20	27340	broad.mit.edu	36	12	100281580	100281580	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	100281580	100281580	C	G	SNP	UTP20	NM_014503	human	genbank	54_36p	1	validated	nonsense	c.5886	p.Y1962*	0.97	superfamily_ARM repeat	"HMMPfam_DRIM,superfamily_ARM repeat"	-	no_errors
MYBPC1	4604	broad.mit.edu	36	12	100567277	100567277	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	100567277	100567277	T	C	SNP	MYBPC1	NM_002465	human	genbank	54_36p	1	validated	silent	c.1305	p.A435	0.09	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
MYBPC1	4604	broad.mit.edu	36	12	100598365	100598365	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	100598365	100598365	T	G	SNP	MYBPC1	NM_002465	human	genbank	54_36p	1	validated	missense	c.3360	p.D1120E	0.99	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
MYBPC1	4604	broad.mit.edu	36	12	100598386	100598386	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	100598386	100598386	A	G	SNP	MYBPC1	NM_002465	human	genbank	54_36p	1	validated	silent	c.3381	p.K1127	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin"	-	no_errors
DRAM1	55332	broad.mit.edu	36	12	100839133	100839133	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	100839133	100839133	C	A	SNP	DRAM	NM_018370	human	genbank	54_36p	1	reviewed	silent	c.681	p.T227	0.97	NULL	HMMPfam_Frag1	-	no_errors
NUP37	79023	broad.mit.edu	36	12	101036303	101036303	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	101036303	101036303	T	C	SNP	NUP37	NM_024057	human	genbank	54_36p	-1	provisional	missense	c.124	p.N42D	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
PAH	5053	broad.mit.edu	36	12	101762268	101762268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	101762268	101762268	G	A	SNP	PAH	NM_000277	human	genbank	54_36p	-1	reviewed	silent	c.1041	p.L347	1	"superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H"	"superfamily_SSF55021,HMMPfam_ACT,superfamily_Aaa_hydroxylase,HMMPfam_Biopterin_H,PatternScan_BIOPTERIN_HYDROXYL"	-	no_errors
PAH	5053	broad.mit.edu	36	12	101770838	101770838	+	Nonsense_Mutation	SNP	G	G	A	rs5030846	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	101770838	101770838	G	A	SNP	PAH	NM_000277	human	genbank	54_36p	-1	reviewed	nonsense	c.727	p.R243*	1	"HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase"	"HMMPfam_ACT,PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase,superfamily_SSF55021"	-	no_errors
STAB2	55576	broad.mit.edu	36	12	102642987	102642987	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	102642987	102642987	C	T	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	silent	c.4788	p.R1596	0.61	"HMMSmart_EGF,superfamily_BIgH3_FAS1"	###############################################################################################################################################################################################################################################################	-	no_errors
STAB2	55576	broad.mit.edu	36	12	102658568	102658568	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	102658568	102658568	C	A	SNP	STAB2	NM_017564	human	genbank	54_36p	1	reviewed	missense	c.5785	p.P1929T	0.74	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NT5DC3	51559	broad.mit.edu	36	12	102695829	102695829	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	102695829	102695829	G	C	SNP	NT5DC3	NM_001031701	human	genbank	54_36p	-1	validated	missense	c.1555	p.R519G	0.97	HMMPfam_5_nucleotid	"superfamily_HAD-like,HMMPfam_5_nucleotid"	-	no_errors
NUAK1	9891	broad.mit.edu	36	12	104985605	104985605	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	104985605	104985605	C	T	SNP	NUAK1	NM_014840	human	genbank	54_36p	-1	validated	missense	c.1091	p.R364Q	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TCP11L2	255394	broad.mit.edu	36	12	105239423	105239423	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	105239423	105239423	C	T	SNP	TCP11L2	NM_152772	human	genbank	54_36p	1	provisional	silent	c.444	p.G148	1	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
CRY1	1407	broad.mit.edu	36	12	105917967	105917967	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	105917967	105917967	T	C	SNP	CRY1	NM_004075	human	genbank	54_36p	-1	validated	silent	c.708	p.R236	1	"superfamily_Cryptochrome/photolyase FAD-binding domain,HMMPfam_FAD_binding_7"	"superfamily_Cryptochrome/photolyase N-terminal domain,HMMPfam_DNA_photolyase,superfamily_Cryptochrome/photolyase FAD-binding domain,HMMPfam_FAD_binding_7"	-	no_errors
CRY1	1407	broad.mit.edu	36	12	105919188	105919188	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	105919188	105919188	T	A	SNP	CRY1	NM_004075	human	genbank	54_36p	-1	validated	missense	c.684	p.K228N	1	"HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain"	"HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain,HMMPfam_DNA_photolyase,superfamily_Cryptochrome/photolyase N-terminal domain"	-	no_errors
CRY1	1407	broad.mit.edu	36	12	105919271	105919271	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	105919271	105919271	C	T	SNP	CRY1	NM_004075	human	genbank	54_36p	-1	validated	missense	c.601	p.D201N	1	"superfamily_Cryptochrome/photolyase FAD-binding domain,superfamily_Cryptochrome/photolyase N-terminal domain"	"HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain,HMMPfam_DNA_photolyase,superfamily_Cryptochrome/photolyase N-terminal domain"	-	no_errors
BTBD11	121551	broad.mit.edu	36	12	106536157	106536157	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	106536157	106536157	C	T	SNP	BTBD11	NM_001018072	human	genbank	54_36p	1	validated	missense	c.2324	p.A775V	0.98	NULL	"superfamily_Histone-fold,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
WSCD2	9671	broad.mit.edu	36	12	107128162	107128162	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	107128162	107128162	A	C	SNP	WSCD2	NM_014653	human	genbank	54_36p	1	validated	missense	c.632	p.N211T	1	HMMSmart_SM00321	"HMMSmart_SM00321,HMMPfam_WSC,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
WSCD2	9671	broad.mit.edu	36	12	107166130	107166130	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	107166130	107166130	C	T	SNP	WSCD2	NM_014653	human	genbank	54_36p	1	validated	silent	c.1578	p.L526	0.97	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_WSC,HMMSmart_SM00321,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CMKLR1	1240	broad.mit.edu	36	12	107210540	107210540	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	107210540	107210540	G	C	SNP	CMKLR1	NM_004072	human	genbank	54_36p	-1	validated	silent	c.324	p.A108	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SSH1	54434	broad.mit.edu	36	12	107729204	107729204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	107729204	107729204	C	T	SNP	SSH1	NM_018984	human	genbank	54_36p	-1	provisional	missense	c.431	p.R144Q	0.97	NULL	"superfamily_DEK C-terminal domain,HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
ACACB	32	broad.mit.edu	36	12	108089161	108089161	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	108089161	108089161	G	A	SNP	ACACB	NM_001093	human	genbank	54_36p	1	reviewed	missense	c.766	p.G256R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
FOXN4	121643	broad.mit.edu	36	12	108202014	108202022	+	In_Frame_Del	DEL	GGGTTAGGC	-	GGGTTAGGC	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	GGGTTAGGC	GGGTTAGGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	108202014	108202022	GGGTTAGGC	-	DEL	FOXN4	NM_213596	human	genbank	54_36p	-1	validated	in_frame_del	c.859_851	p.GLTP284in_frame_delA	0.997:1.000:1.000:1.000:0.997:1.000:0.998:0.984:0.721	NULL	"HMMSmart_SM00339,superfamily_Winged helix DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	"(deletion:cds_exon[108201859,108202118])"	no_errors
UBE3B	89910	broad.mit.edu	36	12	108446298	108446298	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	108446298	108446298	A	T	SNP	UBE3B	NM_130466	human	genbank	54_36p	1	reviewed	missense	c.2497	p.I833F	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
UBE3B	89910	broad.mit.edu	36	12	108452778	108452778	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	108452778	108452778	G	T	SNP	UBE3B	NM_130466	human	genbank	54_36p	1	reviewed	missense	c.2854	p.V952F	1	"HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain"	-	no_errors
C12orf34	84915	broad.mit.edu	36	12	108690202	108690202	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	108690202	108690202	G	A	SNP	C12orf34	NM_032829	human	genbank	54_36p	1	predicted	missense	c.85	p.E29K	1	NULL	NULL	-	no_errors
C12orf34	84915	broad.mit.edu	36	12	108690738	108690738	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	108690738	108690738	C	G	SNP	C12orf34	NM_032829	human	genbank	54_36p	1	predicted	missense	c.621	p.N207K	1	NULL	NULL	-	no_errors
C12orf34	84915	broad.mit.edu	36	12	108691299	108691299	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	108691299	108691299	G	C	SNP	C12orf34	NM_032829	human	genbank	54_36p	1	predicted	missense	c.1182	p.K394N	1	NULL	NULL	-	no_errors
TRPV4	59341	broad.mit.edu	36	12	108725281	108725281	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	108725281	108725281	T	A	SNP	TRPV4	NM_021625	human	genbank	54_36p	-1	reviewed	missense	c.610	p.N204Y	0	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
TCHP	84260	broad.mit.edu	36	12	108836700	108836700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	108836700	108836700	T	C	SNP	TCHP	NM_032300	human	genbank	54_36p	1	validated	missense	c.1205	p.L402P	0.97	NULL	NULL	-	no_errors
C12orf76	400073	broad.mit.edu	36	12	108964569	108964569	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	108964569	108964569	C	T	SNP	FLJ40142	NM_207435	human	genbank	54_36p	-1	predicted	silent	c.378	p.A126	1	NULL	NULL	-	no_errors
ATP2A2	488	broad.mit.edu	36	12	109262911	109262911	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	109262911	109262911	C	A	SNP	ATP2A2	NM_170665	human	genbank	54_36p	1	reviewed	missense	c.1826	p.S609Y	1	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Hydrolase,superfamily_HAD-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP2A2	488	broad.mit.edu	36	12	109267487	109267487	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	109267487	109267487	T	C	SNP	ATP2A2	NM_170665	human	genbank	54_36p	1	reviewed	silent	c.2658	p.D886	1	"HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M"	###############################################################################################################################################################################################################################################################	-	no_errors
MYL2	4633	broad.mit.edu	36	12	109837929	109837929	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	109837929	109837929	C	A	SNP	MYL2	NM_000432	human	genbank	54_36p	-1	reviewed	missense	c.142	p.D48Y	1	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
MYL2	4633	broad.mit.edu	36	12	109841372	109841372	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	109841372	109841372	C	T	SNP	MYL2	NM_000432	human	genbank	54_36p	-1	reviewed	silent	c.12	p.K4	1	NULL	"HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand"	-	no_errors
CUX2	23316	broad.mit.edu	36	12	110260538	110260538	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	110260538	110260538	C	T	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	missense	c.3262	p.R1088W	1	HMMPfam_CUT	"HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
CUX2	23316	broad.mit.edu	36	12	110269817	110269817	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	110269817	110269817	C	T	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	missense	c.3766	p.P1256S	0.29	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
CUX2	23316	broad.mit.edu	36	12	110270422	110270422	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	110270422	110270422	G	C	SNP	CUX2	NM_015267	human	genbank	54_36p	1	validated	silent	c.4371	p.R1457	1	NULL	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1"	-	no_errors
FAM109A	144717	broad.mit.edu	36	12	110285217	110285218	+	Missense_Mutation	DNP	CC	CC	AT	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	110285217	110285218	CC	AT	DNP	FAM109A	NM_144671	human	genbank	54_36p	-1	validated	missense	c.398_397	p.G133M	0.035:0.033	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
ATXN2	6311	broad.mit.edu	36	12	110392426	110392426	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	110392426	110392426	T	C	SNP	ATXN2	NM_002973	human	genbank	54_36p	-1	reviewed	missense	c.3185	p.H1062R	1	NULL	"superfamily_Sm-like ribonucleoproteins,HMMPfam_LsmAD,HMMPfam_PAM2"	-	no_errors
ACAD10	80724	broad.mit.edu	36	12	110631810	110631810	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	110631810	110631810	T	G	SNP	ACAD10	NM_025247	human	genbank	54_36p	1	reviewed	missense	c.629	p.F210C	1	"HMMPfam_Hydrolase,superfamily_HAD-like"	###############################################################################################################################################################################################################################################################	-	no_errors
ACAD10	80724	broad.mit.edu	36	12	110668393	110668393	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	110668393	110668393	A	G	SNP	ACAD10	NM_025247	human	genbank	54_36p	1	reviewed	silent	c.2178	p.K726	0.96	"HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like"	###############################################################################################################################################################################################################################################################	-	no_errors
MAPKAPK5	8550	broad.mit.edu	36	12	110802716	110802716	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	110802716	110802716	T	A	SNP	MAPKAPK5	NM_139078	human	genbank	54_36p	1	reviewed	splice_site	c.660+2	e8+2	1	-	-	-	no_errors
C12orf51	283450	broad.mit.edu	36	12	111090030	111090030	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	111090030	111090030	A	C	SNP	C12orf51	NM_001109662	human	genbank	54_36p	-1	validated	missense	c.11017	p.C3673G	1	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	"superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
C12orf51	283450	broad.mit.edu	36	12	111092551	111092551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	111092551	111092551	C	A	SNP	C12orf51	NM_001109662	human	genbank	54_36p	-1	validated	missense	c.10755	p.E3585D	0.99	NULL	"HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain"	-	no_errors
C12orf51	283450	broad.mit.edu	36	12	111152049	111152049	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	111152049	111152049	T	C	SNP	C12orf51	NM_001109662	human	genbank	54_36p	-1	validated	missense	c.5089	p.M1697V	1	NULL	"HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain"	-	no_errors
C12orf51	283450	broad.mit.edu	36	12	111228320	111228320	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	111228320	111228320	C	T	SNP	C12orf51	NM_001109662	human	genbank	54_36p	-1	validated	nonsense	c.84	p.W28*	1	NULL	"HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain"	-	no_errors
RPH3A	22895	broad.mit.edu	36	12	111770015	111770015	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	111770015	111770015	A	T	SNP	RPH3A	NM_014954	human	genbank	54_36p	1	validated	missense	c.203	p.E68V	1	"HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF"	"HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
RPH3A	22895	broad.mit.edu	36	12	111787659	111787659	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	111787659	111787659	C	T	SNP	RPH3A	NM_014954	human	genbank	54_36p	1	validated	silent	c.276	p.N92	1	"HMMPfam_RPH3A_effector,superfamily_FYVE_PHD_ZnF"	"HMMPfam_C2,HMMSmart_C2,HMMPfam_RPH3A_effector,superfamily_C2_CaLB,superfamily_FYVE_PHD_ZnF"	-	no_errors
OAS2	4939	broad.mit.edu	36	12	111927340	111927340	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	111927340	111927340	C	A	SNP	OAS2	NM_016817	human	genbank	54_36p	1	reviewed	missense	c.1398	p.S466R	0.24	"superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2"	"superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMPfam_NTP_transf_2"	-	no_errors
IQCD	115811	broad.mit.edu	36	12	112129788	112129788	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	112129788	112129788	C	T	SNP	IQCD	NM_138451	human	genbank	54_36p	-1	provisional	silent	c.567	p.E189	0	NULL	"HMMSmart_IQ,HMMPfam_IQ"	-	no_errors
IQCD	115811	broad.mit.edu	36	12	112129957	112129957	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	112129957	112129957	G	C	SNP	IQCD	NM_138451	human	genbank	54_36p	-1	provisional	missense	c.398	p.S133C	0	NULL	"HMMPfam_IQ,HMMSmart_IQ"	-	no_errors
TPCN1	53373	broad.mit.edu	36	12	112191059	112191059	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	112191059	112191059	C	T	SNP	TPCN1	NM_017901	human	genbank	54_36p	1	validated	missense	c.658	p.R220C	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
TPCN1	53373	broad.mit.edu	36	12	112213821	112213821	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	112213821	112213821	C	T	SNP	TPCN1	NM_017901	human	genbank	54_36p	1	validated	missense	c.1984	p.H662Y	0.99	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	"HMMPfam_Ion_trans,PatternScan_LECTIN_LEGUME_BETA,superfamily_Voltage-gated potassium channels"	-	no_errors
RBM19	9904	broad.mit.edu	36	12	112859282	112859282	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	112859282	112859282	C	T	SNP	RBM19	NM_016196	human	genbank	54_36p	-1	provisional	missense	c.1981	p.V661I	0.99	superfamily_RNA-binding domain RBD	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMSmart_SM00361"	-	no_errors
TBX5	6910	broad.mit.edu	36	12	113277927	113277927	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	113277927	113277927	C	T	SNP	TBX5	NM_000192	human	genbank	54_36p	-1	reviewed	silent	c.1350	p.L450	0.65	NULL	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TBX5	6910	broad.mit.edu	36	12	113278154	113278154	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	113278154	113278154	G	A	SNP	TBX5	NM_000192	human	genbank	54_36p	-1	reviewed	missense	c.1123	p.R375W	1	NULL	"HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1"	-	no_errors
TBX5	6910	broad.mit.edu	36	12	113278161	113278161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	12	113278161	113278161	C	T	SNP	TBX5	ENST00000392559	human	ensembl	54_36p	-1	known	missense	c.962	p.R321Q	0.79	NULL	"HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1"	-	no_errors
TBX3	6926	broad.mit.edu	36	12	113598654	113598654	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	113598654	113598654	G	C	SNP	TBX3	NM_016569	human	genbank	54_36p	-1	reviewed	missense	c.946	p.Q316E	1	NULL	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TBX3	6926	broad.mit.edu	36	12	113605310	113605310	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	113605310	113605310	C	A	SNP	TBX3	NM_016569	human	genbank	54_36p	-1	reviewed	missense	c.79	p.D27Y	1	NULL	"HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1"	-	no_errors
MED13L	23389	broad.mit.edu	36	12	114905449	114905449	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	114905449	114905449	G	A	SNP	MED13L	NM_015335	human	genbank	54_36p	-1	validated	missense	c.4811	p.S1604F	1	HMMPfam_TRAP_240kDa	HMMPfam_TRAP_240kDa	-	no_errors
C12orf49	79794	broad.mit.edu	36	12	115642535	115642535	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	115642535	115642535	G	A	SNP	C12orf49	NM_024738	human	genbank	54_36p	-1	predicted	silent	c.369	p.G123	1	HMMPfam_DUF2054	HMMPfam_DUF2054	-	no_errors
RNFT2	84900	broad.mit.edu	36	12	115756109	115756109	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	115756109	115756109	G	C	SNP	RNFT2	NM_001109903	human	genbank	54_36p	1	validated	missense	c.1012	p.V338L	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
FBXW8	26259	broad.mit.edu	36	12	115946377	115946377	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	115946377	115946377	G	T	SNP	FBXW8	NM_153348	human	genbank	54_36p	1	reviewed	silent	c.1410	p.S470	0.97	"superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
NOS1	4842	broad.mit.edu	36	12	116149679	116149679	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	116149679	116149679	G	T	SNP	NOS1	NM_000620	human	genbank	54_36p	-1	validated	missense	c.3556	p.P1186T	1	"superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1"	###############################################################################################################################################################################################################################################################	-	no_errors
WSB2	55884	broad.mit.edu	36	12	116956429	116956429	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	116956429	116956429	T	C	SNP	WSB2	NM_018639	human	genbank	54_36p	-1	reviewed	silent	c.1170	p.P390	1	"HMMSmart_SOCS,HMMPfam_SOCS_box"	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SOCS,HMMPfam_SOCS_box"	-	no_errors
PEBP1	5037	broad.mit.edu	36	12	117060263	117060263	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	117060263	117060263	C	G	SNP	PEBP1	NM_002567	human	genbank	54_36p	1	validated	missense	c.172	p.L58V	0.99	"superfamily_PEBP-like,HMMPfam_PBP"	"superfamily_PEBP-like,HMMPfam_PBP,PatternScan_PBP"	-	no_errors
TAOK3	51347	broad.mit.edu	36	12	117121365	117121365	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	117121365	117121365	G	T	SNP	TAOK3	NM_016281	human	genbank	54_36p	-1	validated	missense	c.1068	p.S356R	1	superfamily_Kinase_like	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SRRM4	84530	broad.mit.edu	36	12	118052871	118052871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	118052871	118052871	G	A	SNP	KIAA1853	NM_194286	human	genbank	54_36p	1	validated	missense	c.620	p.R207H	0.85	NULL	NULL	-	no_errors
CIT	11113	broad.mit.edu	36	12	118619884	118619884	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	118619884	118619884	C	T	SNP	CIT	NM_007174	human	genbank	54_36p	-1	validated	missense	c.5719	p.G1907S	0.71	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CIT	11113	broad.mit.edu	36	12	118619990	118619990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	12	118619990	118619990	C	T	SNP	CIT	NM_007174	human	genbank	54_36p	-1	validated	silent	c.5613	p.P1871	0.98	"HMMPfam_CNH,HMMSmart_SM00036"	###############################################################################################################################################################################################################################################################	-	no_errors
CIT	11113	broad.mit.edu	36	12	118635783	118635783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	118635783	118635783	C	T	SNP	CIT	NM_007174	human	genbank	54_36p	-1	validated	missense	c.4234	p.G1412S	1	"HMMPfam_C1_1,superfamily_Cysteine-rich domain"	###############################################################################################################################################################################################################################################################	-	no_errors
GCN1L1	10985	broad.mit.edu	36	12	119070500	119070500	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	119070500	119070500	C	A	SNP	GCN1L1	NM_006836	human	genbank	54_36p	-1	validated	missense	c.4580	p.C1527F	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
GCN1L1	10985	broad.mit.edu	36	12	119085085	119085085	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	119085085	119085085	C	T	SNP	GCN1L1	NM_006836	human	genbank	54_36p	-1	validated	silent	c.2112	p.R704	1	superfamily_ARM repeat	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
RPLP0	6175	broad.mit.edu	36	12	119119580	119119580	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	119119580	119119580	A	G	SNP	RPLP0	NM_001002	human	genbank	54_36p	-1	reviewed	silent	c.720	p.S240	0.99	HMMPfam_Ribosomal_60s	"HMMPfam_Ribosomal_L10,HMMPfam_Ribosomal_60s"	-	no_errors
PXN	5829	broad.mit.edu	36	12	119134669	119134669	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	12	119134669	119134669	G	T	SNP	PXN	NM_002859	human	genbank	54_36p	-1	validated	missense	c.1505	p.S502Y	1	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	"HMMPfam_Paxillin,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
PXN	5829	broad.mit.edu	36	12	119137799	119137799	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	119137799	119137799	C	T	SNP	PXN	ENST00000228307	human	ensembl	54_36p	-1	known	missense	c.880	p.G294S	0.15	NULL	"HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_Paxillin,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
PXN	5829	broad.mit.edu	36	12	119143917	119143917	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	119143917	119143917	C	G	SNP	PXN	NM_002859	human	genbank	54_36p	-1	validated	missense	c.723	p.E241D	1	HMMPfam_Paxillin	"HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_Paxillin,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
COQ5	84274	broad.mit.edu	36	12	119426212	119426212	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	119426212	119426212	C	A	SNP	COQ5	NM_032314	human	genbank	54_36p	-1	validated	nonsense	c.826	p.G276*	1	"HMMPfam_Ubie_methyltran,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_Ubie_methyltran,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_UBIE_1,PatternScan_UBIE_2"	-	no_errors
POP5	51367	broad.mit.edu	36	12	119503411	119503411	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	119503411	119503411	G	A	SNP	POP5	NM_015918	human	genbank	54_36p	-1	validated	missense	c.53	p.P18L	1	HMMPfam_RNase_P_Rpp14	HMMPfam_RNase_P_Rpp14	-	no_errors
SPPL3	121665	broad.mit.edu	36	12	119688520	119688520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	119688520	119688520	C	T	SNP	SPPL3	NM_139015	human	genbank	54_36p	-1	validated	missense	c.1012	p.A338T	1	"HMMPfam_Peptidase_A22B,HMMSmart_SM00730"	"HMMPfam_Peptidase_A22B,HMMSmart_SM00730"	-	no_errors
WDR66	144406	broad.mit.edu	36	12	120854166	120854166	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	120854166	120854166	C	A	SNP	WDR66	NM_144668	human	genbank	54_36p	1	validated	nonsense	c.879	p.Y293*	0.86	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,superfamily_EF-hand"	-	no_errors
WDR66	144406	broad.mit.edu	36	12	120873797	120873797	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	120873797	120873797	G	C	SNP	WDR66	NM_144668	human	genbank	54_36p	1	validated	missense	c.1298	p.S433T	0.99	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,superfamily_EF-hand"	-	no_errors
MLXIP	22877	broad.mit.edu	36	12	121178416	121178416	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	121178416	121178416	T	C	SNP	MLXIP	ENST00000319080	human	ensembl	54_36p	1	known	missense	c.553	p.F185L	1	NULL	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353"	-	no_errors
B3GNT4	79369	broad.mit.edu	36	12	121257149	121257149	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121257149	121257149	G	A	SNP	B3GNT4	NM_030765	human	genbank	54_36p	1	reviewed	missense	c.398	p.R133Q	0.89	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
B3GNT4	79369	broad.mit.edu	36	12	121257289	121257289	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	121257289	121257289	G	A	SNP	B3GNT4	NM_030765	human	genbank	54_36p	1	reviewed	missense	c.538	p.D180N	1	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors
DIABLO	56616	broad.mit.edu	36	12	121259056	121259056	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom;ManualReview;Sequenom			Illumina GAIIx	12	121259056	121259056	G	T	SNP	DIABLO	NM_019887	human	genbank	54_36p	-1	reviewed	missense	c.545	p.T182N	0.02	"HMMPfam_Smac_DIABLO,superfamily_Smac/diablo"	"HMMPfam_Smac_DIABLO,superfamily_Smac/diablo"	-	no_errors
CLIP1	6249	broad.mit.edu	36	12	121404952	121404952	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121404952	121404952	C	T	SNP	CLIP1	NM_002956	human	genbank	54_36p	-1	validated	splice_site	c.1307+1	e6+1	1	-	-	-	no_errors
RSRC2	65117	broad.mit.edu	36	12	121572739	121572739	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121572739	121572739	T	A	SNP	RSRC2	NM_023012	human	genbank	54_36p	-1	validated	nonsense	c.67	p.K23*	1	NULL	NULL	-	no_errors
KNTC1	9735	broad.mit.edu	36	12	121607955	121607955	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121607955	121607955	G	C	SNP	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	missense	c.1344	p.Q448H	0.18	NULL	"PatternScan_BZIP_BASIC,HMMPfam_Rod_C"	-	no_errors
KNTC1	9735	broad.mit.edu	36	12	121623710	121623710	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121623710	121623710	C	A	SNP	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	silent	c.2208	p.I736	0.09	NULL	"PatternScan_BZIP_BASIC,HMMPfam_Rod_C"	-	no_errors
KNTC1	9735	broad.mit.edu	36	12	121653718	121653718	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121653718	121653718	C	T	SNP	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	silent	c.5076	p.I1692	0.99	HMMPfam_Rod_C	"PatternScan_BZIP_BASIC,HMMPfam_Rod_C"	-	no_errors
KNTC1	9735	broad.mit.edu	36	12	121655545	121655548	+	Frame_Shift_Del	DEL	ATCA	-	ATCA	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	ATCA	ATCA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	121655545	121655548	ATCA	-	DEL	KNTC1	NM_014708	human	genbank	54_36p	1	reviewed	frame_shift_del	c.5344_5347	p.N1783fs	0.921:0.910:0.010:0.009	HMMPfam_Rod_C	"HMMPfam_Rod_C,PatternScan_BZIP_BASIC"	"(deletion:cds_exon[121655377,121655587])"	no_errors
GPR109A	338442	broad.mit.edu	36	12	121753766	121753766	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121753766	121753766	C	T	SNP	NIACR1	NM_177551	human	genbank	54_36p	-1	validated	silent	c.18	p.L6	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR109B	8843	broad.mit.edu	36	12	121766190	121766190	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121766190	121766190	C	T	SNP	NIACR2	NM_006018	human	genbank	54_36p	-1	validated	missense	c.1048	p.G350S	0	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR109B	8843	broad.mit.edu	36	12	121767220	121767220	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121767220	121767220	C	T	SNP	NIACR2	NM_006018	human	genbank	54_36p	-1	validated	silent	c.18	p.L6	0	superfamily_Family A G protein-coupled receptor-like	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
CCDC62	84660	broad.mit.edu	36	12	121842531	121842531	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	121842531	121842531	G	A	SNP	CCDC62	NM_201435	human	genbank	54_36p	1	validated	missense	c.682	p.E228K	1	NULL	NULL	-	no_errors
ABCB9	23457	broad.mit.edu	36	12	121980614	121980614	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	121980614	121980614	G	A	SNP	ABCB9	NM_019625	human	genbank	54_36p	-1	reviewed	missense	c.2098	p.R700W	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
PITPNM2	57605	broad.mit.edu	36	12	122063189	122063189	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	122063189	122063189	G	C	SNP	PITPNM2	NM_020845	human	genbank	54_36p	-1	validated	silent	c.339	p.T113	1	"HMMPfam_IP_trans,superfamily_Bet v1-like"	"HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
SBNO1	55206	broad.mit.edu	36	12	122355111	122355112	+	Missense_Mutation	DNP	AA	AA	TT	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	AA	AA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	122355111	122355112	AA	TT	DNP	SBNO1	NM_018183	human	genbank	54_36p	-1	provisional	missense	c.3736_3735	p.Y1246N	0.998:0.991	NULL	NULL	-	no_errors
SBNO1	55206	broad.mit.edu	36	12	122361599	122361599	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	12	122361599	122361599	A	G	SNP	SBNO1	NM_018183	human	genbank	54_36p	-1	provisional	missense	c.3248	p.L1083P	1	NULL	NULL	-	no_errors
TCTN2	79867	broad.mit.edu	36	12	122745445	122745445	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	122745445	122745445	T	A	SNP	TCTN2	NM_024809	human	genbank	54_36p	1	validated	silent	c.1203	p.I401	0	HMMPfam_DUF1619	HMMPfam_DUF1619	-	no_errors
ATP6V0A2	23545	broad.mit.edu	36	12	122786043	122786043	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	122786043	122786043	C	T	SNP	ATP6V0A2	NM_012463	human	genbank	54_36p	1	validated	silent	c.744	p.H248	0.97	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
ATP6V0A2	23545	broad.mit.edu	36	12	122799083	122799083	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	122799083	122799083	G	A	SNP	ATP6V0A2	NM_012463	human	genbank	54_36p	1	validated	missense	c.1733	p.R578K	1	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
DNAH10	196385	broad.mit.edu	36	12	122849786	122849786	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	122849786	122849786	A	G	SNP	DNAH10	NM_207437	human	genbank	54_36p	1	validated	missense	c.1304	p.E435G	1	HMMPfam_DHC_N1	HMMPfam_DHC_N1	-	no_errors
DNAH10	196385	broad.mit.edu	36	12	122898462	122898462	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	122898462	122898462	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	54_36p	1	known	missense	c.5462	p.A1821V	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH10	196385	broad.mit.edu	36	12	122918013	122918013	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	122918013	122918013	A	G	SNP	DNAH10	ENST00000409039	human	ensembl	54_36p	1	known	missense	c.6860	p.Y2287C	0.45	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH10	196385	broad.mit.edu	36	12	122961116	122961116	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	122961116	122961116	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	54_36p	1	known	missense	c.9724	p.E3242K	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
UBC	7316	broad.mit.edu	36	12	123963649	123963649	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	123963649	123963649	G	C	SNP	UBC	NM_021009	human	genbank	54_36p	-1	validated	missense	c.622	p.L208V	1	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin"	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	-	no_errors
UBC	7316	broad.mit.edu	36	12	123963914	123963939	+	Frame_Shift_Del	DEL	CAACCTCTGCTGGTCAGGAGGAATGC	-	CAACCTCTGCTGGTCAGGAGGAATGC	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	CAACCTCTGCTGGTCAGGAGGAATGC	CAACCTCTGCTGGTCAGGAGGAATGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	123963914	123963939	CAACCTCTGCTGGTCAGGAGGAATGC	-	DEL	UBC	NM_021009	human	genbank	54_36p	-1	validated	frame_shift_del	c.357_332	p.G111fs	1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.975:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	"HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1"	"(deletion:cds_exon[123962213,123964270])"	no_errors
DHX37	57647	broad.mit.edu	36	12	124017294	124017294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	124017294	124017294	C	T	SNP	DHX37	NM_032656	human	genbank	54_36p	-1	reviewed	missense	c.1588	p.E530K	0	superfamily_SSF52540	"PatternScan_DEAH_ATP_HELICASE,HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
AACS	65985	broad.mit.edu	36	12	124184519	124184519	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	124184519	124184519	G	T	SNP	AACS	NM_023928	human	genbank	54_36p	1	validated	missense	c.1567	p.D523Y	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
TMEM132B	114795	broad.mit.edu	36	12	124570120	124570120	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	124570120	124570120	C	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	missense	c.1274	p.A425V	0.99	NULL	NULL	-	no_errors
TMEM132B	114795	broad.mit.edu	36	12	124701239	124701239	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	124701239	124701239	C	T	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	silent	c.1686	p.S562	1	NULL	NULL	-	no_errors
TMEM132B	114795	broad.mit.edu	36	12	124704761	124704761	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	124704761	124704761	G	C	SNP	TMEM132B	NM_052907	human	genbank	54_36p	1	provisional	missense	c.2789	p.R930T	1	NULL	NULL	-	no_errors
TMEM132D	121256	broad.mit.edu	36	12	128125002	128125002	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	128125002	128125002	G	A	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	nonsense	c.2671	p.Q891*	1	NULL	NULL	-	no_errors
TMEM132D	121256	broad.mit.edu	36	12	128129077	128129077	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	128129077	128129077	G	T	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	silent	c.2070	p.I690	1	NULL	NULL	-	no_errors
TMEM132D	121256	broad.mit.edu	36	12	128132269	128132269	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	128132269	128132269	C	T	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	missense	c.1911	p.M637I	1	NULL	NULL	-	no_errors
TMEM132D	121256	broad.mit.edu	36	12	128751112	128751112	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	128751112	128751112	T	G	SNP	TMEM132D	NM_133448	human	genbank	54_36p	-1	validated	missense	c.164	p.N55T	0.6	NULL	NULL	-	no_errors
PIWIL1	9271	broad.mit.edu	36	12	129397538	129397538	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	129397538	129397538	T	A	SNP	PIWIL1	NM_004764	human	genbank	54_36p	1	reviewed	missense	c.631	p.F211I	1	superfamily_PAZ domain	"superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi"	-	no_errors
PIWIL1	9271	broad.mit.edu	36	12	129413273	129413273	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	129413273	129413273	A	C	SNP	PIWIL1	NM_004764	human	genbank	54_36p	1	reviewed	silent	c.1980	p.S660	0.69	"HMMPfam_Piwi,superfamily_Ribonuclease H-like"	"HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,superfamily_PAZ domain"	-	no_errors
RIMBP2	23504	broad.mit.edu	36	12	129463099	129463127	+	Splice_Site	DEL	ATAGGGGTTTGCGCTTACCTATTTTCTCC	-	ATAGGGGTTTGCGCTTACCTATTTTCTCC	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	ATAGGGGTTTGCGCTTACCTATTTTCTCC	ATAGGGGTTTGCGCTTACCTATTTTCTCC	-	-	ATAGGGGTTTGCGCTTACCTATTTTCTCC	ATAGGGGTTTGCGCTTACCTATTTTCTCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	12	129463099	129463127	ATAGGGGTTTGCGCTTACCTATTTTCTCC	-	DEL	RIMBP2	NM_015347	human	genbank	54_36p	-1	validated	splice_site_del	c.2821+12_2821+1	e14-1	0.003:0.012:0.042:0.041:0.011:0.007:0.001:0.000:0.000:0.000:0.000:0.000:0.011:0.980:0.986:0.988:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	"(deletion:intron[129458328,129463116], cds_exon[129463117,129463285])"	no_errors
RIMBP2	23504	broad.mit.edu	36	12	129492506	129492506	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	129492506	129492506	G	T	SNP	RIMBP2	NM_015347	human	genbank	54_36p	-1	validated	silent	c.1293	p.I431	0.99	"superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060"	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060"	-	no_errors
GPR133	283383	broad.mit.edu	36	12	130032443	130032443	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	12	130032443	130032443	G	A	SNP	GPR133	NM_198827	human	genbank	54_36p	1	validated	silent	c.372	p.A124	0.07	superfamily_Concanavalin A-like lectins/glucanases	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
PUS1	80324	broad.mit.edu	36	12	130980501	130980501	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	130980501	130980501	C	T	SNP	PUS1	NM_025215	human	genbank	54_36p	1	validated	silent	c.171	p.R57	0.03	NULL	"superfamily_Pseudouridine synthase,HMMPfam_PseudoU_synth_1"	-	no_errors
EP400	57634	broad.mit.edu	36	12	131063515	131063515	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	131063515	131063515	C	T	SNP	EP400	NM_015409	human	genbank	54_36p	1	validated	silent	c.3447	p.A1149	0.01	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N"	"HMMPfam_HSA,HMMSmart_HSA,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Homeodomain_like"	-	no_errors
EP400	57634	broad.mit.edu	36	12	131082509	131082509	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	131082509	131082509	A	C	SNP	EP400	NM_015409	human	genbank	54_36p	1	validated	missense	c.5810	p.H1937P	1	"HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540"	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HSA,superfamily_Homeodomain_like,HMMSmart_HSA,HMMSmart_DEXDc,superfamily_SSF52540"	-	no_errors
DDX51	317781	broad.mit.edu	36	12	131193236	131193236	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	131193236	131193236	G	T	SNP	DDX51	NM_175066	human	genbank	54_36p	-1	validated	silent	c.660	p.S220	0.67	"superfamily_SSF52540,HMMSmart_DEXDc"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
P2RX2	22953	broad.mit.edu	36	12	131708475	131708475	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	131708475	131708475	C	A	SNP	P2RX2	NM_170683	human	genbank	54_36p	1	reviewed	silent	c.1338	p.G446	0	NULL	"HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR"	-	no_errors
POLE	5426	broad.mit.edu	36	12	131730604	131730604	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	131730604	131730604	G	A	SNP	POLE	NM_006231	human	genbank	54_36p	-1	validated	silent	c.4182	p.V1394	1	NULL	"superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744"	-	no_errors
ANKLE2	23141	broad.mit.edu	36	12	131814717	131814717	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	131814717	131814717	C	A	SNP	ANKLE2	NM_015114	human	genbank	54_36p	-1	validated	silent	c.2589	p.L863	1	NULL	"HMMPfam_LEM,superfamily_LEM domain,superfamily_Ankyrin repeat"	-	no_errors
GOLGA3	2802	broad.mit.edu	36	12	131875697	131875697	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	131875697	131875697	T	C	SNP	GOLGA3	NM_005895	human	genbank	54_36p	-1	reviewed	missense	c.2800	p.T934A	0.79	superfamily_Prefoldin	"superfamily_Spectrin repeat,superfamily_Prefoldin"	-	no_errors
GOLGA3	2802	broad.mit.edu	36	12	131894955	131894955	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	131894955	131894955	T	G	SNP	GOLGA3	NM_005895	human	genbank	54_36p	-1	reviewed	missense	c.773	p.N258T	0	NULL	"superfamily_Prefoldin,superfamily_Spectrin repeat"	-	no_errors
ZNF605	100289635	broad.mit.edu	36	12	132013728	132013728	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	132013728	132013728	T	C	SNP	ZNF605	NM_183238	human	genbank	54_36p	-1	provisional	missense	c.230	p.K77R	0.17	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
ZNF605	100289635	broad.mit.edu	36	12	132019805	132019805	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	132019805	132019805	C	G	SNP	ZNF605	NM_183238	human	genbank	54_36p	-1	provisional	missense	c.25	p.E9Q	1	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF140	7699	broad.mit.edu	36	12	132169760	132169760	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	132169760	132169760	A	C	SNP	ZNF140	NM_003440	human	genbank	54_36p	1	validated	splice_site	c.10-2	e2-2	0.99	-	-	-	no_errors
ZNF268	10795	broad.mit.edu	36	12	132274621	132274621	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	132274621	132274621	C	G	SNP	ZNF268	NM_003415	human	genbank	54_36p	1	provisional	missense	c.124	p.L42V	0.01	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_stop_codon:bad_bp_length_for_coding_region
TUBA3C	7278	broad.mit.edu	36	13	18646092	18646092	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	18646092	18646092	G	C	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	missense	c.1264	p.R422G	1	superfamily_Tubulin C-terminal domain-like	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
TUBA3C	7278	broad.mit.edu	36	13	18649364	18649364	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	18649364	18649364	C	T	SNP	TUBA3C	NM_006001	human	genbank	54_36p	-1	reviewed	silent	c.759	p.T253	0.96	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
TPTE2	93492	broad.mit.edu	36	13	18939412	18939412	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	18939412	18939412	A	G	SNP	TPTE2	NM_199254	human	genbank	54_36p	-1	validated	silent	c.465	p.D155	0.97	superfamily_Voltage-gated potassium channels	"superfamily_Voltage-gated potassium channels,superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2"	-	no_errors
XPO4	64328	broad.mit.edu	36	13	20294414	20294414	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	20294414	20294414	G	C	SNP	XPO4	NM_022459	human	genbank	54_36p	-1	validated	missense	c.855	p.I285M	1	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
LATS2	26524	broad.mit.edu	36	13	20447312	20447312	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	20447312	20447312	G	T	SNP	LATS2	NM_014572	human	genbank	54_36p	-1	reviewed	silent	c.2964	p.P988	1	"superfamily_Kinase_like,HMMSmart_S_TK_X"	"HMMPfam_UBA,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
SKA3	221150	broad.mit.edu	36	13	20648551	20648551	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	20648551	20648551	C	T	SNP	C13orf3	NM_145061	human	genbank	54_36p	-1	validated	silent	c.66	p.T22	1	NULL	NULL	-	no_errors
SACS	26278	broad.mit.edu	36	13	22809439	22809439	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;ManualReview;Capture			Illumina GAIIx	13	22809439	22809439	G	A	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	silent	c.6135	p.I2045	1	NULL	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Chaperone J-domain,HMMPfam_HEPN,superfamily_Nucleotidyltransferase substrate binding subunit/domain,HMMSmart_SM00748"	-	no_errors
SACS	26278	broad.mit.edu	36	13	22810946	22810946	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	22810946	22810946	A	T	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	missense	c.4628	p.V1543E	1	NULL	"superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Nucleotidyltransferase substrate binding subunit/domain"	-	no_errors
SACS	26278	broad.mit.edu	36	13	22812961	22812961	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	22812961	22812961	C	G	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	missense	c.2613	p.E871D	1	NULL	"superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Nucleotidyltransferase substrate binding subunit/domain"	-	no_errors
PARP4	143	broad.mit.edu	36	13	23919310	23919310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	23919310	23919310	C	T	SNP	PARP4	NM_006437	human	genbank	54_36p	-1	reviewed	missense	c.3129	p.M1043I	0.01	"superfamily_SSF53300,HMMPfam_VWA"	"HMMPfam_BRCT,superfamily_BRCT,HMMSmart_BRCT,superfamily_PARP_reg,HMMPfam_PARP,superfamily_SSF56399,HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	-	no_errors
PARP4	143	broad.mit.edu	36	13	23958373	23958373	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	23958373	23958373	T	C	SNP	PARP4	NM_006437	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.K429E	0	"HMMPfam_PARP,superfamily_SSF56399"	"HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_VWA,HMMSmart_VWA,superfamily_PARP_reg,HMMSmart_VIT,HMMPfam_PARP,HMMPfam_VIT,superfamily_SSF53300,superfamily_SSF56399"	-	no_errors
ATP12A	479	broad.mit.edu	36	13	24162510	24162510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	24162510	24162510	C	A	SNP	ATP12A	NM_001676	human	genbank	54_36p	1	reviewed	missense	c.581	p.T194N	0	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP12A	479	broad.mit.edu	36	13	24172938	24172938	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	24172938	24172938	G	T	SNP	ATP12A	NM_001676	human	genbank	54_36p	1	reviewed	missense	c.1759	p.D587Y	1	"HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M"	###############################################################################################################################################################################################################################################################	-	no_errors
RNF17	56163	broad.mit.edu	36	13	24272504	24272504	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	24272504	24272504	A	T	SNP	RNF17	NM_031277	human	genbank	54_36p	1	reviewed	silent	c.1590	p.G530	0.99	NULL	"superfamily_RING/U-box,PatternScan_ZF_RING_1,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,superfamily_Staphylococcal nuclease"	-	no_errors
CENPJ	55835	broad.mit.edu	36	13	24378452	24378452	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	24378452	24378452	A	G	SNP	CENPJ	NM_018451	human	genbank	54_36p	-1	reviewed	missense	c.1724	p.L575S	1	NULL	HMMPfam_Tcp10_C	-	no_errors
CENPJ	55835	broad.mit.edu	36	13	24378632	24378632	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	24378632	24378632	G	T	SNP	CENPJ	NM_018451	human	genbank	54_36p	-1	reviewed	missense	c.1544	p.T515K	0	NULL	HMMPfam_Tcp10_C	-	no_errors
CENPJ	55835	broad.mit.edu	36	13	24384797	24384797	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	13	24384797	24384797	T	A	SNP	CENPJ	NM_018451	human	genbank	54_36p	-1	reviewed	missense	c.367	p.N123Y	0.15	NULL	HMMPfam_Tcp10_C	-	no_errors
CENPJ	55835	broad.mit.edu	36	13	24385017	24385017	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	24385017	24385017	G	A	SNP	CENPJ	NM_018451	human	genbank	54_36p	-1	reviewed	silent	c.147	p.D49	0	NULL	HMMPfam_Tcp10_C	-	no_errors
PABPC3	5042	broad.mit.edu	36	13	24568542	24568542	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	24568542	24568542	T	G	SNP	PABPC3	NM_030979	human	genbank	54_36p	1	validated	missense	c.206	p.L69R	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361,superfamily_PABC (PABP) domain,HMMPfam_PABP,HMMSmart_SM00517"	-	no_errors
PABPC3	5042	broad.mit.edu	36	13	24569197	24569197	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	24569197	24569197	G	C	SNP	PABPC3	NM_030979	human	genbank	54_36p	1	validated	missense	c.861	p.R287S	1	NULL	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain,HMMSmart_SM00361,superfamily_RNA-binding domain RBD"	-	no_errors
FAM123A	219287	broad.mit.edu	36	13	24641819	24641819	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	24641819	24641819	G	A	SNP	FAM123A	NM_152704	human	genbank	54_36p	-1	validated	missense	c.1939	p.R647C	1	NULL	HMMPfam_WTX	-	no_errors
FAM123A	219287	broad.mit.edu	36	13	24642713	24642713	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	24642713	24642713	C	A	SNP	FAM123A	NM_152704	human	genbank	54_36p	-1	validated	missense	c.1045	p.A349S	0.91	HMMPfam_WTX	HMMPfam_WTX	-	no_errors
FAM123A	219287	broad.mit.edu	36	13	24643687	24643687	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	24643687	24643687	C	A	SNP	FAM123A	NM_152704	human	genbank	54_36p	-1	validated	missense	c.71	p.G24V	1	NULL	HMMPfam_WTX	-	no_errors
ATP8A2	51761	broad.mit.edu	36	13	25042928	25042928	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	25042928	25042928	G	T	SNP	ATP8A2	NM_016529	human	genbank	54_36p	1	validated	missense	c.1497	p.E499D	1	"superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ATP8A2	51761	broad.mit.edu	36	13	25484707	25484707	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	25484707	25484707	G	A	SNP	ATP8A2	NM_016529	human	genbank	54_36p	1	validated	missense	c.3416	p.R1139Q	1	NULL	"HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
SHISA2	387914	broad.mit.edu	36	13	25518663	25518663	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	25518663	25518663	C	T	SNP	SHISA2	NM_001007538	human	genbank	54_36p	-1	provisional	silent	c.876	p.A292	0.44	NULL	NULL	-	no_errors
RNF6	6049	broad.mit.edu	36	13	25687649	25687649	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	25687649	25687649	T	C	SNP	RNF6	NM_005977	human	genbank	54_36p	-1	reviewed	missense	c.370	p.T124A	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
CDK8	1024	broad.mit.edu	36	13	25854987	25854987	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	25854987	25854987	G	C	SNP	CDK8	NM_001260	human	genbank	54_36p	1	reviewed	missense	c.493	p.E165Q	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
GPR12	2835	broad.mit.edu	36	13	26231719	26231719	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	26231719	26231719	T	C	SNP	GPR12	NM_005288	human	genbank	54_36p	-1	validated	silent	c.246	p.L82	0.94	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MTIF3	219402	broad.mit.edu	36	13	26909388	26909388	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	26909388	26909388	C	A	SNP	MTIF3	NM_152912	human	genbank	54_36p	-1	provisional	silent	c.483	p.L161	0.03	superfamily_Translation initiation factor IF3 C-terminal domain	"HMMPfam_IF3_N,superfamily_Translation initiation factor IF3 N-terminal domain,superfamily_Translation initiation factor IF3 C-terminal domain"	-	no_errors
FLT3	2322	broad.mit.edu	36	13	27507758	27507758	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	27507758	27507758	C	G	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.1471	p.V491L	0.03	NULL	"superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
MTUS2	23281	broad.mit.edu	36	13	28497077	28497077	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	28497077	28497077	T	C	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	1	validated	missense	c.272	p.L91P	0.38	NULL	NULL	-	no_errors
MTUS2	23281	broad.mit.edu	36	13	28497284	28497284	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	28497284	28497284	G	T	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	1	validated	missense	c.479	p.R160M	0.25	NULL	NULL	-	no_errors
MTUS2	23281	broad.mit.edu	36	13	28831456	28831456	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	28831456	28831456	C	A	SNP	KIAA0774	NM_001033602	human	genbank	54_36p	1	validated	missense	c.2993	p.P998Q	0.81	NULL	NULL	-	no_errors
HMGB1	3146	broad.mit.edu	36	13	29935343	29935343	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	29935343	29935343	C	T	SNP	HMGB1	NM_002128	human	genbank	54_36p	-1	validated	splice_site	c.296+1	e2+1	1	-	-	-	no_errors
C13orf26	122046	broad.mit.edu	36	13	30438436	30438436	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	30438436	30438436	C	T	SNP	C13orf26	NM_152325	human	genbank	54_36p	1	predicted	nonsense	c.547	p.R183*	0.96	NULL	NULL	-	no_errors
HSPH1	10808	broad.mit.edu	36	13	30624998	30624998	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	30624998	30624998	T	A	SNP	HSPH1	NM_006644	human	genbank	54_36p	-1	validated	missense	c.520	p.M174L	1	"superfamily_Actin-like ATPase domain,HMMPfam_HSP70"	"superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain"	-	no_errors
FRY	10129	broad.mit.edu	36	13	31550987	31550987	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	13	31550987	31550987	C	T	SNP	FRY	NM_023037	human	genbank	54_36p	1	validated	silent	c.87	p.N29	1	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
FRY	10129	broad.mit.edu	36	13	31709670	31709670	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	31709670	31709670	G	T	SNP	FRY	NM_023037	human	genbank	54_36p	1	validated	missense	c.5965	p.G1989C	1	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
FRY	10129	broad.mit.edu	36	13	31733801	31733801	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	31733801	31733801	G	T	SNP	FRY	NM_023037	human	genbank	54_36p	1	validated	missense	c.7465	p.D2489Y	1	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
BRCA2	675	broad.mit.edu	36	13	31808625	31808625	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	13	31808625	31808625	C	A	SNP	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	nonsense	c.2133	p.C711*	0	NULL	"HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3"	-	no_errors
BRCA2	675	broad.mit.edu	36	13	31810553	31810553	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	31810553	31810553	C	T	SNP	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	missense	c.4061	p.T1354M	0.06	NULL	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	-	no_errors
BRCA2	675	broad.mit.edu	36	13	31812137	31812137	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	31812137	31812137	C	A	SNP	BRCA2	NM_000059	human	genbank	54_36p	1	reviewed	nonsense	c.5645	p.S1882*	0.01	NULL	"HMMPfam_BRCA2,HMMPfam_BRCA-2_OB1,HMMPfam_BRCA-2_OB3,HMMPfam_Tower,HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical,superfamily_Nucleic_acid_OB,superfamily_SSF81878"	-	no_errors
N4BP2L1	90634	broad.mit.edu	36	13	31876397	31876397	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	13	31876397	31876397	G	A	SNP	N4BP2L1	NM_001079691	human	genbank	54_36p	-1	validated	silent	c.408	p.T136	0.81	NULL	superfamily_SSF52540	-	no_errors
N4BP2L2	10443	broad.mit.edu	36	13	31915740	31915740	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	31915740	31915740	G	T	SNP	N4BP2L2	NM_033111	human	genbank	54_36p	-1	validated	missense	c.934	p.L312I	0	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KL	9365	broad.mit.edu	36	13	32533040	32533040	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	32533040	32533040	G	C	SNP	KL	NM_004795	human	genbank	54_36p	1	reviewed	missense	c.1824	p.Q608H	1	superfamily_(Trans)glycosidases	"HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F1_2"	-	no_errors
NBEA	26960	broad.mit.edu	36	13	34513220	34513220	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	34513220	34513220	C	T	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.445	p.R149W	1	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
NBEA	26960	broad.mit.edu	36	13	34520725	34520725	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	34520725	34520725	A	C	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	missense	c.749	p.K250T	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat"	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
NBEA	26960	broad.mit.edu	36	13	34583048	34583048	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	13	34583048	34583048	C	T	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	silent	c.1935	p.H645	1	superfamily_ARM repeat	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
NBEA	26960	broad.mit.edu	36	13	34636551	34636567	+	Frame_Shift_Del	DEL	CATAACACAATTCACCT	-	CATAACACAATTCACCT	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	CATAACACAATTCACCT	CATAACACAATTCACCT	-	-	CATAACACAATTCACCT	CATAACACAATTCACCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	13	34636551	34636567	CATAACACAATTCACCT	-	DEL	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	frame_shift_del	c.4138_4154	p.N1381fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.990:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"(deletion:cds_exon[34636493,34636646])"	no_errors
NBEA	26960	broad.mit.edu	36	13	34668278	34668278	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	34668278	34668278	T	C	SNP	NBEA	NM_015678	human	genbank	54_36p	1	reviewed	silent	c.5205	p.I1735	0.9	superfamily_ARM repeat	"HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like"	-	no_errors
MAB21L1	4081	broad.mit.edu	36	13	34947751	34947751	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	34947751	34947751	T	G	SNP	MAB21L1	NM_005584	human	genbank	54_36p	-1	validated	missense	c.525	p.K175N	1	HMMPfam_Mab-21	HMMPfam_Mab-21	-	no_errors
MAB21L1	4081	broad.mit.edu	36	13	34947848	34947848	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	34947848	34947848	C	T	SNP	MAB21L1	NM_005584	human	genbank	54_36p	-1	validated	missense	c.428	p.C143Y	1	HMMPfam_Mab-21	HMMPfam_Mab-21	-	no_errors
POSTN	10631	broad.mit.edu	36	13	37054560	37054560	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	37054560	37054560	G	A	SNP	POSTN	NM_006475	human	genbank	54_36p	-1	validated	silent	c.1335	p.N445	1	"superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554"	"HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554"	-	no_errors
TRPC4	7223	broad.mit.edu	36	13	37109452	37109452	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	37109452	37109452	T	G	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	missense	c.2522	p.D841A	0.98	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2,PatternScan_RIBOSOMAL_S2_1"	-	no_errors
TRPC4	7223	broad.mit.edu	36	13	37123457	37123457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	37123457	37123457	G	A	SNP	TRPC4	NM_016179	human	genbank	54_36p	-1	validated	missense	c.2024	p.T675I	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans,HMMPfam_TRP_2,PatternScan_RIBOSOMAL_S2_1"	-	no_errors
FREM2	341640	broad.mit.edu	36	13	38160554	38160554	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	38160554	38160554	A	G	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.1073	p.N358S	1	NULL	"HMMSmart_SM00237,HMMPfam_Calx-beta"	-	no_errors
FREM2	341640	broad.mit.edu	36	13	38160686	38160686	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	38160686	38160686	C	T	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.1205	p.S402F	1	NULL	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
FREM2	341640	broad.mit.edu	36	13	38160931	38160931	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	38160931	38160931	G	A	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.1450	p.V484M	1	NULL	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
FREM2	341640	broad.mit.edu	36	13	38161731	38161731	+	Missense_Mutation	SNP	C	C	A	rs41292755	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	38161731	38161731	C	A	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	missense	c.2250	p.D750E	1	NULL	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
FREM2	341640	broad.mit.edu	36	13	38351024	38351024	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	38351024	38351024	C	A	SNP	FREM2	NM_207361	human	genbank	54_36p	1	reviewed	silent	c.8916	p.A2972	0.96	NULL	"HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
C13orf23	80209	broad.mit.edu	36	13	38484999	38484999	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	38484999	38484999	G	C	SNP	C13orf23	NM_025138	human	genbank	54_36p	-1	validated	missense	c.2390	p.P797R	0.35	NULL	NULL	-	no_errors
C13orf23	80209	broad.mit.edu	36	13	38485390	38485390	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	38485390	38485390	T	C	SNP	C13orf23	NM_025138	human	genbank	54_36p	-1	validated	missense	c.1999	p.S667G	0.87	NULL	NULL	-	no_errors
C13orf23	80209	broad.mit.edu	36	13	38498450	38498450	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	38498450	38498450	G	C	SNP	C13orf23	NM_025138	human	genbank	54_36p	-1	validated	silent	c.444	p.P148	1	NULL	NULL	-	no_errors
ELF1	1997	broad.mit.edu	36	13	40415221	40415221	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	13	40415221	40415221	G	C	SNP	ELF1	NM_172373	human	genbank	54_36p	-1	reviewed	missense	c.673	p.P225A	1	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS"	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
KBTBD7	84078	broad.mit.edu	36	13	40666107	40666111	+	Frame_Shift_Del	DEL	AAGTA	-	AAGTA	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	AAGTA	AAGTA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	13	40666107	40666111	AAGTA	-	DEL	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	frame_shift_del	c.287_283	p.Y95fs	1.000:1.000:1.000:1.000:1.000	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1"	"(deletion:cds_exon[40664339,40666393])"	no_errors
KBTBD7	84078	broad.mit.edu	36	13	40666239	40666276	+	Frame_Shift_Del	DEL	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	-	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	13	40666239	40666276	TGTGCCAGCAGGGCTGCAGAATGGGCCGTGTCCTTTAA	-	DEL	KBTBD7	NM_032138	human	genbank	54_36p	-1	provisional	frame_shift_del	c.155_118	p.L40fs	1.000:0.980:0.257:0.892:0.970:1.000:1.000:1.000:1.000:1.000:0.998:0.998:1.000:1.000:0.995:0.994:0.972:0.672:0.998:1.000:1.000:1.000:0.998:0.633:0.667:0.734:0.741:0.750:0.608:0.998:1.000:1.000:1.000:1.000:1.000:0.986:0.991:0.962	superfamily_POZ domain	"HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB"	"(deletion:cds_exon[40664339,40666393])"	no_errors
KIAA0564	23078	broad.mit.edu	36	13	41305524	41305524	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	41305524	41305524	C	T	SNP	KIAA0564	NM_015058	human	genbank	54_36p	-1	validated	silent	c.1569	p.T523	0.99	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMSmart_SM00382,superfamily_vWA-like,HMMSmart_SM00327"	-	no_errors
DGKH	160851	broad.mit.edu	36	13	41670647	41670647	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	41670647	41670647	G	C	SNP	DGKH	NM_178009	human	genbank	54_36p	1	reviewed	missense	c.2201	p.G734A	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DGKH	160851	broad.mit.edu	36	13	41681575	41681575	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	41681575	41681575	A	G	SNP	DGKH	NM_178009	human	genbank	54_36p	1	reviewed	missense	c.2824	p.R942G	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
AKAP11	11215	broad.mit.edu	36	13	41771737	41771737	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	41771737	41771737	T	C	SNP	AKAP11	NM_016248	human	genbank	54_36p	1	reviewed	silent	c.855	p.S285	0	NULL	NULL	-	no_errors
SPERT	220082	broad.mit.edu	36	13	45185931	45185931	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	45185931	45185931	T	A	SNP	SPERT	NM_152719	human	genbank	54_36p	1	provisional	missense	c.770	p.L257Q	1	NULL	NULL	-	no_errors
ZC3H13	23091	broad.mit.edu	36	13	45461023	45461023	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	45461023	45461023	C	G	SNP	ZC3H13	NM_015070	human	genbank	54_36p	-1	validated	missense	c.1155	p.K385N	1	NULL	"superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH"	-	no_errors
LCP1	3936	broad.mit.edu	36	13	45630677	45630677	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	45630677	45630677	G	T	SNP	LCP1	NM_002298	human	genbank	54_36p	-1	reviewed	silent	c.339	p.G113	1	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2"	-	no_errors
ESD	2098	broad.mit.edu	36	13	46259170	46259170	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	46259170	46259170	C	A	SNP	ESD	NM_001984	human	genbank	54_36p	-1	reviewed	silent	c.144	p.L48	0.08	"superfamily_SSF53474,HMMPfam_Esterase"	"superfamily_SSF53474,HMMPfam_Esterase"	-	no_errors
LPAR6	10161	broad.mit.edu	36	13	47884114	47884114	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	47884114	47884114	T	G	SNP	P2RY5	NM_005767	human	genbank	54_36p	-1	reviewed	silent	c.447	p.A149	0.66	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LPAR6	10161	broad.mit.edu	36	13	47884114	47884114	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	47884114	47884114	T	G	SNP	P2RY5	NM_005767	human	genbank	54_36p	-1	reviewed	silent	c.447	p.A149	0.66	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
LPAR6	10161	broad.mit.edu	36	13	47884114	47884114	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	47884114	47884114	T	G	SNP	P2RY5	NM_005767	human	genbank	54_36p	-1	reviewed	silent	c.447	p.A149	0.66	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LPAR6	10161	broad.mit.edu	36	13	47884286	47884286	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	47884286	47884286	G	A	SNP	P2RY5	NM_005767	human	genbank	54_36p	-1	reviewed	missense	c.275	p.S92F	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
RCBTB2	1102	broad.mit.edu	36	13	47975029	47975029	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	47975029	47975029	G	A	SNP	RCBTB2	NM_001268	human	genbank	54_36p	-1	reviewed	missense	c.949	p.H317Y	1	"superfamily_RCC1/BLIP-II,HMMPfam_RCC1"	"superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	-	no_errors
MLNR	2862	broad.mit.edu	36	13	48693313	48693313	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	48693313	48693313	C	T	SNP	MLNR	NM_001507	human	genbank	54_36p	1	provisional	missense	c.839	p.P280L	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RCBTB1	55213	broad.mit.edu	36	13	49013926	49013926	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	49013926	49013926	T	G	SNP	RCBTB1	NM_018191	human	genbank	54_36p	-1	reviewed	missense	c.1211	p.N404T	1	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	"PatternScan_RCC1_1,superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB"	-	no_errors
ARL11	115761	broad.mit.edu	36	13	49102630	49102630	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	49102630	49102630	G	T	SNP	ARL11	NM_138450	human	genbank	54_36p	1	validated	missense	c.46	p.V16L	1	"HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540"	"PatternScan_ARF,HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540"	-	no_errors
EBPL	84650	broad.mit.edu	36	13	49163537	49163538	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	49163537	49163538	CC	AG	DNP	EBPL	NM_032565	human	genbank	54_36p	-1	provisional	missense	c.25_24	p.A9S	0.022:0.000	NULL	HMMPfam_EBP	-	no_errors
KPNA3	3839	broad.mit.edu	36	13	49181737	49181741	+	Frame_Shift_Del	DEL	AAGAG	-	-	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	AAGAG	AAGAG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	49181737	49181741	AAGAG	-	DEL	KPNA3	NM_002267	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1004_1000	p.L334fs	1.000:1.000:1.000:1.000:1.000	"superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	"HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185"	"(deletion:cds_exon[49181709,49181837])"	no_errors
DLEU7	220107	broad.mit.edu	36	13	50315471	50315473	+	Missense_Mutation	TNP	GGG	GGG	TAT	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	GGG	GGG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	50315471	50315473	GGG	TAT	TNP	DLEU7	NM_198989	human	genbank	54_36p	-1	provisional	missense	c.311_313	p.P104H	0.051:0.041:0.139	NULL	NULL	-	no_errors
SERPINE3	647174	broad.mit.edu	36	13	50819273	50819273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	50819273	50819273	G	T	SNP	SERPINE3	NM_001101320	human	genbank	54_36p	1	validated	missense	c.602	p.R201I	0.25	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
INTS6	26512	broad.mit.edu	36	13	50846393	50846393	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	50846393	50846393	T	C	SNP	INTS6	NM_012141	human	genbank	54_36p	-1	reviewed	missense	c.2056	p.T686A	0	NULL	"superfamily_vWA-like,PatternScan_DEAD_ATP_HELICASE"	-	no_errors
ATP7B	540	broad.mit.edu	36	13	51407060	51407060	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	51407060	51407060	G	A	SNP	ATP7B	NM_000053	human	genbank	54_36p	-1	reviewed	missense	c.4231	p.R1411W	0.26	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ALG11	440138	broad.mit.edu	36	13	51491265	51491265	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	51491265	51491265	G	C	SNP	ALG11	NM_001004127	human	genbank	54_36p	1	provisional	missense	c.260	p.R87T	1	superfamily_SSF53756	"superfamily_SSF53756,HMMPfam_Glycos_transf_1"	-	no_errors
UTP14C	9724	broad.mit.edu	36	13	51501443	51501443	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	51501443	51501443	G	A	SNP	UTP14C	NM_021645	human	genbank	54_36p	1	validated	missense	c.502	p.A168T	0.02	HMMPfam_Utp14	HMMPfam_Utp14	-	no_errors
UTP14C	9724	broad.mit.edu	36	13	51502309	51502309	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	51502309	51502309	C	T	SNP	UTP14C	NM_021645	human	genbank	54_36p	1	validated	silent	c.1368	p.S456	0	HMMPfam_Utp14	HMMPfam_Utp14	-	no_errors
UTP14C	9724	broad.mit.edu	36	13	51502326	51502326	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	51502326	51502326	C	T	SNP	UTP14C	NM_021645	human	genbank	54_36p	1	validated	missense	c.1385	p.S462F	0.02	HMMPfam_Utp14	HMMPfam_Utp14	-	no_errors
NEK3	4752	broad.mit.edu	36	13	51607938	51607938	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	51607938	51607938	C	A	SNP	NEK3	ENST00000258597	human	ensembl	54_36p	-1	known	missense	c.1240	p.D414Y	0.97	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
THSD1	55901	broad.mit.edu	36	13	51850087	51850087	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	51850087	51850087	C	T	SNP	THSD1	NM_018676	human	genbank	54_36p	-1	reviewed	silent	c.2019	p.L673	0.97	NULL	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	-	no_errors
LECT1	11061	broad.mit.edu	36	13	52175822	52175822	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	52175822	52175822	G	C	SNP	LECT1	NM_007015	human	genbank	54_36p	-1	reviewed	missense	c.914	p.P305R	1	NULL	HMMPfam_BRICHOS	-	no_errors
PCDH8	5100	broad.mit.edu	36	13	52318357	52318357	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	52318357	52318357	A	C	SNP	PCDH8	NM_002590	human	genbank	54_36p	-1	reviewed	missense	c.2216	p.V739G	0.13	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDH17	27253	broad.mit.edu	36	13	57107191	57107191	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	57107191	57107191	C	A	SNP	PCDH17	NM_001040429	human	genbank	54_36p	1	reviewed	missense	c.2510	p.T837N	1	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin"	-	no_errors
PCDH9	5101	broad.mit.edu	36	13	66103410	66103410	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	66103410	66103410	G	A	SNP	PCDH9	NM_203487	human	genbank	54_36p	-1	reviewed	silent	c.3273	p.D1091	1	NULL	"HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMPfam_Protocadherin"	-	no_errors
PCDH9	5101	broad.mit.edu	36	13	66375734	66375734	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	66375734	66375734	T	C	SNP	PCDH9	NM_203487	human	genbank	54_36p	-1	reviewed	missense	c.3041	p.N1014S	1	NULL	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like"	-	no_errors
PCDH9	5101	broad.mit.edu	36	13	66697664	66697664	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	66697664	66697664	G	T	SNP	PCDH9	NM_203487	human	genbank	54_36p	-1	reviewed	missense	c.2910	p.D970E	1	HMMPfam_Protocadherin	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,HMMPfam_Protocadherin,superfamily_Cadherin-like"	-	no_errors
KLHL1	57626	broad.mit.edu	36	13	69579662	69579662	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	69579662	69579662	G	A	SNP	KLHL1	NM_020866	human	genbank	54_36p	-1	validated	silent	c.171	p.L57	1	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
PIBF1	10464	broad.mit.edu	36	13	72326219	72326219	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	72326219	72326219	A	G	SNP	PIBF1	NM_006346	human	genbank	54_36p	1	validated	missense	c.1247	p.N416S	1	NULL	NULL	-	no_errors
KLF5	688	broad.mit.edu	36	13	72534581	72534581	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	72534581	72534581	G	T	SNP	KLF5	NM_001730	human	genbank	54_36p	1	reviewed	missense	c.843	p.M281I	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
TBC1D4	9882	broad.mit.edu	36	13	74767050	74767050	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	74767050	74767050	G	A	SNP	TBC1D4	NM_014832	human	genbank	54_36p	-1	validated	missense	c.3257	p.P1086L	1	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p"	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
TBC1D4	9882	broad.mit.edu	36	13	74767118	74767118	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	74767118	74767118	A	G	SNP	TBC1D4	NM_014832	human	genbank	54_36p	-1	validated	silent	c.3189	p.H1063	1	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p"	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	-	no_errors
TBC1D4	9882	broad.mit.edu	36	13	74771643	74771643	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	74771643	74771643	G	C	SNP	TBC1D4	NM_014832	human	genbank	54_36p	-1	validated	missense	c.2980	p.L994V	1	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p"	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	-	no_errors
TBC1D4	9882	broad.mit.edu	36	13	74784899	74784899	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	74784899	74784899	A	C	SNP	TBC1D4	NM_014832	human	genbank	54_36p	-1	validated	missense	c.2359	p.S787A	1	NULL	"HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	-	no_errors
KCTD12	115207	broad.mit.edu	36	13	76357361	76357361	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	76357361	76357361	C	A	SNP	KCTD12	NM_138444	human	genbank	54_36p	-1	validated	missense	c.924	p.Q308H	1	NULL	"superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra"	-	no_errors
SCEL	8796	broad.mit.edu	36	13	77035969	77035969	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	77035969	77035969	A	G	SNP	SCEL	NM_144777	human	genbank	54_36p	1	reviewed	missense	c.224	p.K75R	0.49	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1"	-	no_errors
SCEL	8796	broad.mit.edu	36	13	77074235	77074235	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	77074235	77074235	C	T	SNP	SCEL	NM_144777	human	genbank	54_36p	1	reviewed	nonsense	c.952	p.Q318*	0.17	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1"	-	no_errors
SCEL	8796	broad.mit.edu	36	13	77074835	77074835	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	77074835	77074835	T	A	SNP	SCEL	NM_144777	human	genbank	54_36p	1	reviewed	missense	c.1023	p.N341K	0	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1"	-	no_errors
SCEL	8796	broad.mit.edu	36	13	77075255	77075255	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	77075255	77075255	C	T	SNP	SCEL	NM_144777	human	genbank	54_36p	1	reviewed	missense	c.1081	p.H361Y	0	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1"	-	no_errors
NDFIP2	54602	broad.mit.edu	36	13	78993032	78993032	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	78993032	78993032	G	A	SNP	NDFIP2	NM_019080	human	genbank	54_36p	1	provisional	silent	c.408	p.A136	0	NULL	HMMPfam_DUF2370	-	no_errors
NDFIP2	54602	broad.mit.edu	36	13	78993083	78993083	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	13	78993083	78993083	T	A	SNP	NDFIP2	NM_019080	human	genbank	54_36p	1	provisional	missense	c.459	p.S153R	0.99	HMMPfam_DUF2370	HMMPfam_DUF2370	-	no_errors
SLITRK1	114798	broad.mit.edu	36	13	83352093	83352093	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	83352093	83352093	C	A	SNP	SLITRK1	NM_052910	human	genbank	54_36p	-1	validated	missense	c.1551	p.Q517H	1	superfamily_SSF52058	"superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMSmart_LRRNT"	-	no_errors
SLITRK1	114798	broad.mit.edu	36	13	83352756	83352756	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	83352756	83352756	C	A	SNP	SLITRK1	NM_052910	human	genbank	54_36p	-1	validated	missense	c.888	p.E296D	0.98	NULL	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
SLITRK1	114798	broad.mit.edu	36	13	83352936	83352936	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	83352936	83352936	G	A	SNP	SLITRK1	NM_052910	human	genbank	54_36p	-1	validated	silent	c.708	p.I236	1	"HMMSmart_LRRCT,superfamily_SSF52058"	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058"	-	no_errors
SLITRK5	26050	broad.mit.edu	36	13	87128419	87128419	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	87128419	87128419	A	G	SNP	SLITRK5	NM_015567	human	genbank	54_36p	1	validated	silent	c.2775	p.V925	1	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT"	-	no_errors
GPC5	2262	broad.mit.edu	36	13	91143783	91143783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	91143783	91143783	C	T	SNP	GPC5	NM_004466	human	genbank	54_36p	1	reviewed	missense	c.667	p.R223C	0.83	HMMPfam_Glypican	"HMMPfam_Glypican,PatternScan_GLYPICAN"	-	no_errors
GPC5	2262	broad.mit.edu	36	13	91178860	91178860	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	91178860	91178860	A	G	SNP	GPC5	NM_004466	human	genbank	54_36p	1	reviewed	missense	c.1094	p.E365G	1	HMMPfam_Glypican	"HMMPfam_Glypican,PatternScan_GLYPICAN"	-	no_errors
DCT	1638	broad.mit.edu	36	13	93919161	93919161	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	93919161	93919161	T	G	SNP	DCT	NM_001922	human	genbank	54_36p	-1	validated	missense	c.435	p.L145F	1	superfamily_Di-copper_centre	"superfamily_Di-copper_centre,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2"	-	no_errors
DZIP1	22873	broad.mit.edu	36	13	95040593	95040593	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	95040593	95040593	C	T	SNP	DZIP1	NM_198968	human	genbank	54_36p	-1	validated	missense	c.1784	p.R595Q	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
UGGT2	55757	broad.mit.edu	36	13	95334927	95334927	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	95334927	95334927	C	T	SNP	UGCGL2	NM_020121	human	genbank	54_36p	-1	provisional	missense	c.3047	p.R1016H	1	HMMPfam_UDP-g_GGTase	"HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases"	-	no_errors
OXGR1	27199	broad.mit.edu	36	13	96437140	96437141	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	96437140	96437141	GC	AA	DNP	OXGR1	NM_080818	human	genbank	54_36p	-1	reviewed	missense	c.875_874	p.A292F	1.000:1.000	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
OXGR1	27199	broad.mit.edu	36	13	96437261	96437261	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	96437261	96437261	C	T	SNP	OXGR1	NM_080818	human	genbank	54_36p	-1	reviewed	missense	c.754	p.V252I	0.47	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
FARP1	10160	broad.mit.edu	36	13	97841105	97841105	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	97841105	97841105	A	T	SNP	FARP1	NM_005766	human	genbank	54_36p	1	reviewed	missense	c.1058	p.E353V	1	"superfamily_PH domain-like,HMMPfam_FA"	###############################################################################################################################################################################################################################################################	-	no_errors
STK24	8428	broad.mit.edu	36	13	97913946	97913946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	13	97913946	97913946	G	C	SNP	STK24	NM_003576	human	genbank	54_36p	-1	validated	missense	c.965	p.A322G	0.09	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
DOCK9	23348	broad.mit.edu	36	13	98250647	98250647	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	98250647	98250647	C	G	SNP	DOCK9	NM_015296	human	genbank	54_36p	-1	validated	missense	c.5857	p.D1953H	1	HMMPfam_Ded_cyto	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto"	-	no_errors
UBAC2	337867	broad.mit.edu	36	13	98764371	98764371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	98764371	98764371	C	G	SNP	UBAC2	NM_177967	human	genbank	54_36p	1	validated	missense	c.304	p.L102V	1	NULL	"superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA"	-	no_errors
TM9SF2	9375	broad.mit.edu	36	13	99005865	99005865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	99005865	99005865	C	T	SNP	TM9SF2	NM_004800	human	genbank	54_36p	1	provisional	missense	c.1715	p.A572V	1	HMMPfam_EMP70	HMMPfam_EMP70	-	no_errors
FGF14	2259	broad.mit.edu	36	13	101177047	101177047	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	101177047	101177047	A	G	SNP	FGF14	NM_175929	human	genbank	54_36p	-1	reviewed	silent	c.538	p.L180	1	"superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF"	"superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF"	-	no_errors
TPP2	7174	broad.mit.edu	36	13	102128653	102128653	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	102128653	102128653	T	G	SNP	TPP2	NM_003291	human	genbank	54_36p	1	reviewed	missense	c.3736	p.Y1246D	1	NULL	"PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER"	-	no_errors
ERCC5	2073	broad.mit.edu	36	13	102302613	102302613	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	102302613	102302613	G	T	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	missense	c.233	p.G78V	1	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1"	"HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279"	-	no_errors
ERCC5	2073	broad.mit.edu	36	13	102325926	102325926	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	102325926	102325926	C	T	SNP	ERCC5	NM_000123	human	genbank	54_36p	1	reviewed	missense	c.3233	p.S1078F	0.05	NULL	"HMMPfam_XPG_N,HMMSmart_SM00485,HMMPfam_XPG_I,HMMSmart_SM00484,PatternScan_XPG_2,HMMSmart_SM00279,PatternScan_XPG_1,superfamily_5' to 3' exonuclease C-terminal subdomain,superfamily_PIN domain-like"	-	no_errors
SLC10A2	6555	broad.mit.edu	36	13	102501610	102501610	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	102501610	102501610	G	C	SNP	SLC10A2	NM_000452	human	genbank	54_36p	-1	validated	nonsense	c.759	p.Y253*	1	NULL	HMMPfam_SBF	-	no_errors
SLC10A2	6555	broad.mit.edu	36	13	102501769	102501769	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	102501769	102501769	C	T	SNP	SLC10A2	NM_000452	human	genbank	54_36p	-1	validated	silent	c.600	p.A200	0	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
EFNB2	1948	broad.mit.edu	36	13	105943609	105943609	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	105943609	105943609	G	A	SNP	EFNB2	NM_004093	human	genbank	54_36p	-1	reviewed	missense	c.782	p.P261L	1	NULL	"HMMPfam_Ephrin,superfamily_Cupredoxin,PatternScan_EPHRIN"	-	no_errors
LIG4	3981	broad.mit.edu	36	13	107659829	107659829	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	107659829	107659829	C	A	SNP	LIG4	NM_001098268	human	genbank	54_36p	-1	reviewed	missense	c.1789	p.D597Y	1	NULL	"HMMPfam_DNA_ligase_A_N,superfamily_SSF56091,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A1,PatternScan_DNA_LIGASE_A2,HMMPfam_DNA_ligase_A_C,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT"	-	no_errors
LIG4	3981	broad.mit.edu	36	13	107660143	107660143	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	107660143	107660143	G	A	SNP	LIG4	NM_001098268	human	genbank	54_36p	-1	reviewed	missense	c.1475	p.P492L	0.95	HMMPfam_DNA_ligase_A_C	"HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_DNA_ligase_A_N,HMMPfam_DNA_ligase_A_C,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A2,PatternScan_DNA_LIGASE_A1,superfamily_SSF56091"	-	no_errors
ABHD13	84945	broad.mit.edu	36	13	107680236	107680236	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	13	107680236	107680236	A	G	SNP	ABHD13	NM_032859	human	genbank	54_36p	1	validated	silent	c.669	p.P223	0.9	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_1"	-	no_errors
TNFSF13B	10673	broad.mit.edu	36	13	107720506	107720506	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	107720506	107720506	G	C	SNP	TNFSF13B	NM_006573	human	genbank	54_36p	1	reviewed	missense	c.262	p.A88P	0	NULL	"superfamily_TNF-like,HMMPfam_TNF"	-	no_errors
MYO16	23026	broad.mit.edu	36	13	108270690	108270691	+	Missense_Mutation	DNP	AT	AT	TA	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	AT	AT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	108270690	108270691	AT	TA	DNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.806_807	p.N269I	0.740:0.891	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ"	-	no_errors
MYO16	23026	broad.mit.edu	36	13	108502774	108502774	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	13	108502774	108502774	A	G	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	missense	c.2932	p.T978A	0	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO16	23026	broad.mit.edu	36	13	108591694	108591694	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	108591694	108591694	C	T	SNP	MYO16	NM_015011	human	genbank	54_36p	1	validated	silent	c.5067	p.S1689	0.99	NULL	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
COL4A1	1282	broad.mit.edu	36	13	109629692	109629692	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	109629692	109629692	C	G	SNP	COL4A1	NM_001845	human	genbank	54_36p	-1	reviewed	missense	c.2271	p.K757N	1	HMMPfam_Collagen	"HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111"	-	no_errors
ARHGEF7	8874	broad.mit.edu	36	13	110733538	110733538	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	110733538	110733538	G	A	SNP	ARHGEF7	NM_145735	human	genbank	54_36p	1	reviewed	missense	c.1777	p.A593T	0.89	NULL	"superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
ATP11A	23250	broad.mit.edu	36	13	112521659	112521659	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	112521659	112521659	A	G	SNP	ATP11A	NM_032189	human	genbank	54_36p	1	reviewed	missense	c.611	p.E204G	0.99	"superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A"	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ATP11A	23250	broad.mit.edu	36	13	112533842	112533842	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	112533842	112533842	G	A	SNP	ATP11A	NM_032189	human	genbank	54_36p	1	reviewed	silent	c.1374	p.S458	0.35	"superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M"	"HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M"	-	no_errors
ATP11A	23250	broad.mit.edu	36	13	112560572	112560572	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	112560572	112560572	G	A	SNP	ATP11A	NM_032189	human	genbank	54_36p	1	reviewed	silent	c.2634	p.R878	1	superfamily_Calcium ATPase transmembrane domain M	"HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M"	-	no_errors
MCF2L	23263	broad.mit.edu	36	13	112682002	112682002	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	112682002	112682002	C	G	SNP	MCF2L	ENST00000375601	human	ensembl	54_36p	1	known	missense	c.20	p.S7C	0	NULL	"HMMSmart_SEC14,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
MCF2L	23263	broad.mit.edu	36	13	112747657	112747657	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	112747657	112747657	C	T	SNP	MCF2L	NM_024979	human	genbank	54_36p	1	validated	missense	c.344	p.A115V	0.97	HMMSmart_SEC14	"HMMSmart_SEC14,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,PatternScan_DH_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
F7	2155	broad.mit.edu	36	13	112821173	112821173	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	112821173	112821173	C	A	SNP	F7	NM_000131	human	genbank	54_36p	1	reviewed	nonsense	c.1251	p.Y417*	0.99	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	###############################################################################################################################################################################################################################################################	-	no_errors
GRK1	6011	broad.mit.edu	36	13	113372123	113372123	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	13	113372123	113372123	G	T	SNP	GRK1	NM_002929	human	genbank	54_36p	1	reviewed	missense	c.820	p.D274Y	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_stop_codon:bad_bp_length_for_coding_region
GAS6	100128430	broad.mit.edu	36	13	113572816	113572816	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	113572816	113572816	C	T	SNP	LOC100128430	XM_001721612	human	genbank	54_36p	-1	model	nonsense	c.147	p.W49*	0.73	NULL	NULL	-	no_errors
FAM70B	348013	broad.mit.edu	36	13	113599140	113599140	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	113599140	113599140	G	A	SNP	FAM70B	NM_182614	human	genbank	54_36p	-1	provisional	missense	c.908	p.P303L	0	NULL	NULL	-	no_errors
RASA3	22821	broad.mit.edu	36	13	113769356	113769356	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	13	113769356	113769356	T	G	SNP	RASA3	NM_007368	human	genbank	54_36p	-1	reviewed	missense	c.2261	p.K754T	1	NULL	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMSmart_RasGAP,superfamily_Rho_GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK"	-	no_errors
ZNF828	283489	broad.mit.edu	36	13	114108760	114108760	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	13	114108760	114108760	T	C	SNP	ZNF828	NM_032436	human	genbank	54_36p	1	provisional	silent	c.1341	p.D447	0.32	NULL	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
POTEG	404785	broad.mit.edu	36	14	18623823	18623823	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	18623823	18623823	G	A	SNP	POTEG	NM_001005356	human	genbank	54_36p	1	validated	missense	c.407	p.R136H	0	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
OR4N2	390429	broad.mit.edu	36	14	19365760	19365760	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19365760	19365760	C	T	SNP	OR4N2	NM_001004723	human	genbank	54_36p	1	provisional	missense	c.313	p.H105Y	0.81	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K5	79317	broad.mit.edu	36	14	19458896	19458896	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19458896	19458896	C	T	SNP	OR4K5	NM_001005483	human	genbank	54_36p	1	provisional	silent	c.291	p.C97	0.64	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K15	81127	broad.mit.edu	36	14	19513894	19513894	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19513894	19513894	T	A	SNP	OR4K15	NM_001005486	human	genbank	54_36p	1	provisional	missense	c.377	p.F126Y	0.61	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K13	390433	broad.mit.edu	36	14	19571894	19571894	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19571894	19571894	T	C	SNP	OR4K13	NM_001004714	human	genbank	54_36p	-1	provisional	silent	c.864	p.T288	0.18	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4K13	390433	broad.mit.edu	36	14	19571935	19571935	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	19571935	19571935	A	G	SNP	OR4K13	NM_001004714	human	genbank	54_36p	-1	provisional	missense	c.823	p.Y275H	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR4K13	390433	broad.mit.edu	36	14	19572157	19572157	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19572157	19572157	C	A	SNP	OR4K13	NM_001004714	human	genbank	54_36p	-1	provisional	missense	c.601	p.A201S	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
OR11G2	390439	broad.mit.edu	36	14	19735809	19735809	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19735809	19735809	G	C	SNP	OR11G2	NM_001005503	human	genbank	54_36p	1	provisional	missense	c.475	p.D159H	1	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR11G2	390439	broad.mit.edu	36	14	19735929	19735929	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	19735929	19735929	G	A	SNP	OR11G2	NM_001005503	human	genbank	54_36p	1	provisional	missense	c.595	p.V199I	0	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
TTC5	91875	broad.mit.edu	36	14	19827741	19827741	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19827741	19827741	T	A	SNP	TTC5	NM_138376	human	genbank	54_36p	-1	provisional	missense	c.1208	p.Y403F	0.99	NULL	"superfamily_SSF48452,HMMPfam_TPR_1"	-	no_errors
TEP1	7011	broad.mit.edu	36	14	19906445	19906445	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	19906445	19906445	A	G	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	silent	c.7875	p.N2625	0.94	superfamily_WD40 repeat-like	"HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
TEP1	7011	broad.mit.edu	36	14	19916456	19916456	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19916456	19916456	C	G	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	missense	c.5431	p.E1811Q	0.92	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	"HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TEP1	7011	broad.mit.edu	36	14	19921788	19921788	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	19921788	19921788	G	T	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	missense	c.3664	p.L1222M	0.99	"HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TEP1	7011	broad.mit.edu	36	14	19933904	19933904	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	19933904	19933904	G	A	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	silent	c.1704	p.N568	1	HMMPfam_TROVE	"HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TEP1	7011	broad.mit.edu	36	14	19939105	19939105	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	19939105	19939105	C	T	SNP	TEP1	NM_007110	human	genbank	54_36p	-1	reviewed	missense	c.1427	p.R476H	1	HMMPfam_TROVE	"HMMSmart_SM00320,HMMPfam_NACHT,HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PNP	4860	broad.mit.edu	36	14	20010384	20010385	+	Frame_Shift_Del	DEL	TC	-	TC	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	TC	TC	-	-	TC	TC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	20010384	20010385	TC	-	DEL	NP	NM_000270	human	genbank	54_36p	1	reviewed	frame_shift_del	c.89_90	p.I30fs	1.000:0.991	"superfamily_SSF53167,HMMPfam_PNP_UDP_1"	"superfamily_SSF53167,HMMPfam_PNP_UDP_1,PatternScan_PNP_MTAP_2"	"(deletion:cds_exon[20010307,20010476])"	no_errors
RNASE9	390443	broad.mit.edu	36	14	20094609	20094609	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20094609	20094609	T	G	SNP	RNASE9	NM_001001673	human	genbank	54_36p	-1	provisional	missense	c.460	p.K154Q	0	superfamily_RNase A-like	superfamily_RNase A-like	-	no_errors
RNASE9	390443	broad.mit.edu	36	14	20094690	20094690	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20094690	20094690	T	G	SNP	RNASE9	NM_001001673	human	genbank	54_36p	-1	provisional	missense	c.379	p.I127L	0	superfamily_RNase A-like	superfamily_RNase A-like	-	no_errors
OR6S1	341799	broad.mit.edu	36	14	20179490	20179490	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20179490	20179490	G	C	SNP	OR6S1	NM_001001968	human	genbank	54_36p	-1	provisional	missense	c.201	p.N67K	0.96	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
EDDM3B	64184	broad.mit.edu	36	14	20308225	20308225	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20308225	20308225	A	G	SNP	FAM12B	NM_022360	human	genbank	54_36p	1	validated	missense	c.76	p.K26E	0	NULL	superfamily_RNaseA	-	no_errors
RNASE1	6035	broad.mit.edu	36	14	20339645	20339645	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	20339645	20339645	G	T	SNP	RNASE1	NM_002933	human	genbank	54_36p	-1	reviewed	missense	c.423	p.S141R	0.84	"superfamily_RNase A-like,HMMSmart_SM00092,HMMPfam_RnaseA"	"superfamily_RNase A-like,HMMSmart_SM00092,HMMPfam_RnaseA,PatternScan_RNASE_PANCREATIC"	-	no_errors
RNASE3	6037	broad.mit.edu	36	14	20429984	20429984	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	20429984	20429984	G	A	SNP	RNASE3	NM_002935	human	genbank	54_36p	1	validated	missense	c.299	p.R100Q	0	"superfamily_RNaseA,HMMSmart_RNAse_Pc,HMMPfam_RnaseA"	"superfamily_RNaseA,HMMSmart_RNAse_Pc,HMMPfam_RnaseA,PatternScan_RNASE_PANCREATIC"	-	no_errors
SLC39A2	29986	broad.mit.edu	36	14	20537526	20537526	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20537526	20537526	C	T	SNP	SLC39A2	NM_014579	human	genbank	54_36p	1	validated	silent	c.81	p.I27	1	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
SLC39A2	29986	broad.mit.edu	36	14	20539252	20539252	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20539252	20539252	C	T	SNP	SLC39A2	NM_014579	human	genbank	54_36p	1	validated	missense	c.604	p.H202Y	1	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
RNASE13	440163	broad.mit.edu	36	14	20572058	20572058	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	20572058	20572058	G	T	SNP	RNASE13	NM_001012264	human	genbank	54_36p	-1	validated	missense	c.230	p.A77D	0.02	superfamily_RNaseA	superfamily_RNaseA	-	no_errors
RNASE7	84659	broad.mit.edu	36	14	20581370	20581370	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20581370	20581370	A	C	SNP	RNASE7	NM_032572	human	genbank	54_36p	1	validated	missense	c.379	p.N127H	0	"superfamily_RNase A-like,HMMSmart_SM00092,HMMPfam_RnaseA"	"superfamily_RNase A-like,HMMSmart_SM00092,HMMPfam_RnaseA,PatternScan_RNASE_PANCREATIC"	-	no_errors
FLJ10357	55701	broad.mit.edu	36	14	20616962	20616962	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	20616962	20616962	C	A	SNP	FLJ10357	NM_018071	human	genbank	54_36p	1	validated	missense	c.2326	p.H776N	0.28	NULL	"superfamily_DBL homology domain (DH-domain),superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
FLJ10357	55701	broad.mit.edu	36	14	20620094	20620094	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	20620094	20620094	G	T	SNP	FLJ10357	NM_018071	human	genbank	54_36p	1	validated	missense	c.3227	p.R1076L	0.72	NULL	"superfamily_DBL homology domain (DH-domain),HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
RPGRIP1	57096	broad.mit.edu	36	14	20855751	20855751	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20855751	20855751	C	A	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	1	reviewed	missense	c.1208	p.A403E	0	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	-	no_errors
RPGRIP1	57096	broad.mit.edu	36	14	20863383	20863383	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20863383	20863383	G	T	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	1	reviewed	splice_site	c.2367+1	e15+1	1	-	-	-	no_errors
RPGRIP1	57096	broad.mit.edu	36	14	20881203	20881203	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20881203	20881203	G	A	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	1	reviewed	missense	c.3508	p.E1170K	1	NULL	"HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
RPGRIP1	57096	broad.mit.edu	36	14	20889180	20889180	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20889180	20889180	A	G	SNP	RPGRIP1	NM_020366	human	genbank	54_36p	1	reviewed	missense	c.3826	p.I1276V	0.72	NULL	"HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	-	no_errors
SUPT16H	11198	broad.mit.edu	36	14	20901013	20901037	+	Splice_Site	DEL	TGCTCAGTGAAAACTCTTACTTCTG	-	TGCTCAGTGAAAACTCTTACTTCTG	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	TGCTCAGTGAAAACTCTTACTTCTG	TGCTCAGTGAAAACTCTTACTTCTG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	20901013	20901037	TGCTCAGTGAAAACTCTTACTTCTG	-	DEL	SUPT16H	NM_007192	human	genbank	54_36p	-1	reviewed	splice_site_del	c.1511+6_1511+1	e14-1	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.024:0.035:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	"(deletion:intron[20900947,20901032], cds_exon[20901033,20901148])"	no_errors
CHD8	57680	broad.mit.edu	36	14	20946781	20946781	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20946781	20946781	T	C	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.1571	p.H524R	0.89	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
CHD8	57680	broad.mit.edu	36	14	20966253	20966253	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	20966253	20966253	C	G	SNP	CHD8	NM_020920	human	genbank	54_36p	-1	validated	missense	c.379	p.A127P	1	NULL	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SALL2	6297	broad.mit.edu	36	14	21061409	21061409	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	21061409	21061409	C	A	SNP	SALL2	NM_005407	human	genbank	54_36p	-1	validated	nonsense	c.2293	p.E765*	0.02	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
DAD1	1603	broad.mit.edu	36	14	22127883	22127884	+	Frame_Shift_Del	DEL	AG	-	AG	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	AG	AG	-	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	22127883	22127884	AG	-	DEL	DAD1	NM_001344	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.21_20	p.S7fs	0.997:1.000	HMMPfam_DAD	HMMPfam_DAD	"(deletion:cds_exon[22127693,22127903])"	no_errors
SLC7A7	9056	broad.mit.edu	36	14	22317889	22317889	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	22317889	22317889	G	C	SNP	SLC7A7	NM_003982	human	genbank	54_36p	-1	reviewed	silent	c.723	p.G241	1	HMMPfam_AA_permease	"PatternScan_AMINO_ACID_PERMEASE_1,HMMPfam_AA_permease"	-	no_errors
REM2	161253	broad.mit.edu	36	14	22425178	22425178	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	22425178	22425178	A	G	SNP	REM2	NM_173527	human	genbank	54_36p	1	validated	missense	c.625	p.T209A	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00174,HMMPfam_Ras"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMPfam_Ras"	-	no_errors
ACIN1	22985	broad.mit.edu	36	14	22617242	22617242	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	22617242	22617242	T	G	SNP	ACIN1	NM_014977	human	genbank	54_36p	-1	validated	missense	c.2255	p.Q752P	1	NULL	"superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_RNA-binding domain RBD"	-	no_errors
CEBPE	1053	broad.mit.edu	36	14	22656582	22656582	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	22656582	22656582	A	G	SNP	CEBPE	NM_001805	human	genbank	54_36p	-1	reviewed	missense	c.800	p.I267T	1	NULL	"PatternScan_BZIP_BASIC,HMMSmart_BRLZ,HMMPfam_bZIP_2"	-	no_errors
SLC7A8	23428	broad.mit.edu	36	14	22679626	22679626	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	22679626	22679626	C	T	SNP	SLC7A8	NM_012244	human	genbank	54_36p	-1	validated	missense	c.682	p.E228K	1	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC22A17	51310	broad.mit.edu	36	14	22886663	22886663	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	22886663	22886663	G	C	SNP	SLC22A17	NM_020372	human	genbank	54_36p	-1	provisional	missense	c.1062	p.F354L	1	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter"	"HMMPfam_MFS_1,superfamily_MFS general substrate transporter,PatternScan_SUGAR_TRANSPORT_1,PatternScan_AA_TRNA_LIGASE_I"	-	no_errors
MYH7	4625	broad.mit.edu	36	14	22958572	22958572	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	22958572	22958572	G	A	SNP	MYH7	NM_000257	human	genbank	54_36p	-1	reviewed	silent	c.3813	p.N1271	0.99	"HMMPfam_Myosin_tail_1,superfamily_Prefoldin"	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
MYH7	4625	broad.mit.edu	36	14	22965067	22965067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	22965067	22965067	C	T	SNP	MYH7	NM_000257	human	genbank	54_36p	-1	reviewed	missense	c.2108	p.R703H	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH7	4625	broad.mit.edu	36	14	22971763	22971763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	22971763	22971763	G	A	SNP	MYH7	NM_000257	human	genbank	54_36p	-1	reviewed	missense	c.427	p.R143W	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AP1G2	8906	broad.mit.edu	36	14	23105182	23105182	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23105182	23105182	G	A	SNP	AP1G2	NM_003917	human	genbank	54_36p	-1	reviewed	missense	c.499	p.R167W	1	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N"	"superfamily_ARM-type_fold,HMMPfam_Adaptin_N,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2"	-	no_errors
JPH4	84502	broad.mit.edu	36	14	23110511	23110511	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23110511	23110511	T	A	SNP	JPH4	NM_032452	human	genbank	54_36p	-1	reviewed	splice_site	c.1271-2	e4-2	1	-	-	-	no_errors
DHRS2	10202	broad.mit.edu	36	14	23178002	23178002	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23178002	23178002	G	A	SNP	DHRS2	NM_182908	human	genbank	54_36p	1	validated	missense	c.89	p.R30K	0	NULL	"superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
LRRC16B	90668	broad.mit.edu	36	14	23595742	23595742	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23595742	23595742	G	C	SNP	LRRC16B	NM_138360	human	genbank	54_36p	1	validated	missense	c.937	p.A313P	1	superfamily_RNI-like	"superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
LRRC16B	90668	broad.mit.edu	36	14	23601595	23601595	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23601595	23601595	C	G	SNP	LRRC16B	NM_138360	human	genbank	54_36p	1	validated	silent	c.2547	p.L849	0.86	NULL	"HMMSmart_SM00368,superfamily_RNI-like"	-	no_errors
RNF31	55072	broad.mit.edu	36	14	23689492	23689492	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23689492	23689492	C	A	SNP	RNF31	NM_017999	human	genbank	54_36p	1	validated	missense	c.1192	p.L398I	1	NULL	"HMMPfam_PUB,superfamily_Znf265 first zinc-finger domain,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_NZF domain,HMMPfam_zf-RanBP,superfamily_RING/U-box,HMMSmart_SM00647,PatternScan_ZF_RING_1"	-	no_errors
GMPR2	51292	broad.mit.edu	36	14	23776199	23776199	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23776199	23776199	G	C	SNP	GMPR2	NM_016576	human	genbank	54_36p	1	validated	splice_site	c.601+1	e5+1	1	-	-	-	no_errors
GMPR2	51292	broad.mit.edu	36	14	23777318	23777318	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	14	23777318	23777318	G	C	SNP	GMPR2	NM_016576	human	genbank	54_36p	1	validated	missense	c.778	p.G260R	1	"superfamily_Inosine monophosphate dehydrogenase (IMPDH),HMMPfam_IMPDH"	"superfamily_Inosine monophosphate dehydrogenase (IMPDH),HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED"	-	no_errors
GMPR2	51292	broad.mit.edu	36	14	23777660	23777660	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	23777660	23777660	G	C	SNP	GMPR2	NM_016576	human	genbank	54_36p	1	validated	missense	c.937	p.V313L	1	"HMMPfam_IMPDH,superfamily_Inosine monophosphate dehydrogenase (IMPDH)"	"HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED,superfamily_Inosine monophosphate dehydrogenase (IMPDH)"	-	no_errors
TGM1	7051	broad.mit.edu	36	14	23793822	23793822	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23793822	23793822	A	G	SNP	TGM1	NM_000359	human	genbank	54_36p	-1	reviewed	missense	c.1976	p.L659P	1	"superfamily_Transglut_C,HMMPfam_Transglut_C"	"superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C"	-	no_errors
TGM1	7051	broad.mit.edu	36	14	23800742	23800743	+	Missense_Mutation	DNP	GA	GA	AT	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	23800742	23800743	GA	AT	DNP	TGM1	NM_000359	human	genbank	54_36p	-1	reviewed	missense	c.507_506	p.I169N	0.123:0.133	"HMMPfam_Transglut_N,superfamily_Ig_E-set"	"HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001"	-	no_errors
LTB4R2	56413	broad.mit.edu	36	14	23849749	23849749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	23849749	23849749	G	A	SNP	LTB4R2	NM_019839	human	genbank	54_36p	1	provisional	silent	c.132	p.L44	0.16	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
ADCY4	196883	broad.mit.edu	36	14	23861158	23861158	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	23861158	23861158	G	A	SNP	ADCY4	NM_139247	human	genbank	54_36p	-1	reviewed	missense	c.2540	p.P847L	1	HMMSmart_SM00044	"HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053"	-	no_errors
NFATC4	4776	broad.mit.edu	36	14	23908629	23908629	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	23908629	23908629	C	A	SNP	NFATC4	NM_004554	human	genbank	54_36p	1	reviewed	missense	c.185	p.P62H	0.85	NULL	"superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
KHNYN	23351	broad.mit.edu	36	14	23970921	23970921	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	23970921	23970921	C	T	SNP	KIAA0323	NM_015299	human	genbank	54_36p	1	validated	missense	c.614	p.A205V	0	NULL	NULL	-	no_errors
CTSG	1511	broad.mit.edu	36	14	24113465	24113465	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	24113465	24113465	C	T	SNP	CTSG	NM_001911	human	genbank	54_36p	-1	reviewed	silent	c.420	p.T140	0	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
GZMH	2999	broad.mit.edu	36	14	24146728	24146728	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	24146728	24146728	G	T	SNP	GZMH	NM_033423	human	genbank	54_36p	-1	provisional	missense	c.269	p.P90H	0.02	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
FOXG1	2290	broad.mit.edu	36	14	28306971	28306971	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	28306971	28306971	C	T	SNP	FOXG1	NM_005249	human	genbank	54_36p	1	reviewed	silent	c.735	p.H245	1	"HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head"	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
PRKD1	5587	broad.mit.edu	36	14	29169942	29169942	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	29169942	29169942	C	T	SNP	PRKD1	NM_002742	human	genbank	54_36p	-1	validated	missense	c.1429	p.V477I	1	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PRKD1	5587	broad.mit.edu	36	14	29177679	29177679	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	29177679	29177679	C	G	SNP	PRKD1	NM_002742	human	genbank	54_36p	-1	validated	silent	c.879	p.G293	0.84	"HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889"	"HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF50729,superfamily_SSF57889"	-	no_errors
G2E3	55632	broad.mit.edu	36	14	30151266	30151266	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	30151266	30151266	G	A	SNP	G2E3	NM_017769	human	genbank	54_36p	1	validated	missense	c.1603	p.D535N	1	"superfamily_HECT,HMMPfam_HECT"	"HMMSmart_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING,superfamily_HECT,HMMPfam_HECT"	-	no_errors
HECTD1	25831	broad.mit.edu	36	14	30653011	30653011	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	30653011	30653011	G	C	SNP	HECTD1	NM_015382	human	genbank	54_36p	-1	validated	missense	c.5679	p.C1893W	1	NULL	"superfamily_ARM repeat,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC,HMMPfam_MIB_HERC2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT"	-	no_errors
ARHGAP5	394	broad.mit.edu	36	14	31632657	31632657	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	31632657	31632657	A	C	SNP	ARHGAP5	NM_001030055	human	genbank	54_36p	1	reviewed	silent	c.3031	p.R1011	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
AKAP6	9472	broad.mit.edu	36	14	32084933	32084933	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	32084933	32084933	G	A	SNP	AKAP6	NM_004274	human	genbank	54_36p	1	reviewed	silent	c.1323	p.L441	0.71	NULL	"HMMSmart_SM00150,superfamily_Spectrin repeat,PatternScan_PFKB_KINASES_2"	-	no_errors
AKAP6	9472	broad.mit.edu	36	14	32361192	32361192	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	32361192	32361192	A	C	SNP	AKAP6	NM_004274	human	genbank	54_36p	1	reviewed	missense	c.4422	p.Q1474H	1	NULL	"PatternScan_PFKB_KINASES_2,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
AKAP6	9472	broad.mit.edu	36	14	32361328	32361328	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	32361328	32361328	C	A	SNP	AKAP6	NM_004274	human	genbank	54_36p	1	reviewed	missense	c.4558	p.P1520T	1	NULL	"PatternScan_PFKB_KINASES_2,HMMSmart_SM00150,superfamily_Spectrin repeat"	-	no_errors
SNX6	58533	broad.mit.edu	36	14	34120520	34120520	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	34120520	34120520	T	G	SNP	SNX6	NM_152233	human	genbank	54_36p	-1	reviewed	silent	c.868	p.R290	1	HMMPfam_Vps5	"superfamily_PX domain,HMMPfam_PX,HMMPfam_Vps5"	-	no_errors
SRP54	6729	broad.mit.edu	36	14	34561934	34561934	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	34561934	34561934	A	G	SNP	SRP54	NM_003136	human	genbank	54_36p	1	provisional	silent	c.1224	p.R408	1	"superfamily_Signal peptide-binding domain,HMMPfam_SRP_SPB"	"HMMPfam_SRP54_N,superfamily_Domain of the SRP/SRP receptor G-proteins,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_SRP54,PatternScan_SRP54,superfamily_Signal peptide-binding domain,HMMPfam_SRP_SPB"	-	no_errors
MIPOL1	145282	broad.mit.edu	36	14	36847325	36847325	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	36847325	36847325	C	A	SNP	MIPOL1	NM_138731	human	genbank	54_36p	1	validated	missense	c.678	p.N226K	1	NULL	NULL	-	no_errors
SSTR1	6751	broad.mit.edu	36	14	37749231	37749231	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T	-	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	37749231	37749231	T	-	DEL	SSTR1	NM_001049	human	genbank	54_36p	1	reviewed	frame_shift_del	c.886	p.F296fs	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	"(deletion:cds_exon[37748346,37749521])"	no_errors
CLEC14A	161198	broad.mit.edu	36	14	37794073	37794073	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	37794073	37794073	G	C	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	silent	c.906	p.P302	0	superfamily_SSF57196	"PatternScan_EGF_1,PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMSmart_EGF,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2"	-	no_errors
CLEC14A	161198	broad.mit.edu	36	14	37794184	37794184	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	37794184	37794184	G	C	SNP	CLEC14A	NM_175060	human	genbank	54_36p	-1	provisional	missense	c.795	p.D265E	0	"PatternScan_ASX_HYDROXYL,HMMSmart_EGF,superfamily_SSF57196"	"PatternScan_ASX_HYDROXYL,HMMSmart_CLECT,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196"	-	no_errors
SEC23A	10484	broad.mit.edu	36	14	38606220	38606220	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	38606220	38606220	T	C	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	missense	c.1135	p.T379A	1	"superfamily_SSF81995,HMMPfam_Sec23_trunk,superfamily_SSF53300"	"superfamily_SSF81995,superfamily_Znf_Sec23_Sec24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_SSF53300,HMMPfam_Sec23_BS,superfamily_Sec23_helical,HMMPfam_Sec23_helical,superfamily_SSF82754,HMMPfam_Gelsolin"	-	no_errors
SEC23A	10484	broad.mit.edu	36	14	38635059	38635059	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	38635059	38635059	C	A	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	missense	c.15	p.L5F	1	NULL	"HMMPfam_zf-Sec23_Sec24,superfamily_Znf_Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Sec23_helical,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_SSF53300,superfamily_SSF81995,superfamily_SSF82754"	-	no_errors
PNN	5411	broad.mit.edu	36	14	38719972	38719972	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	38719972	38719972	T	A	SNP	PNN	NM_002687	human	genbank	54_36p	1	validated	missense	c.1308	p.D436E	1	NULL	"HMMPfam_Pinin_SDK_N,HMMPfam_Pinin_SDK_memA"	-	no_errors
MIA2	117153	broad.mit.edu	36	14	38792090	38792090	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	38792090	38792090	T	A	SNP	MIA2	NM_054024	human	genbank	54_36p	1	validated	missense	c.1851	p.N617K	0.01	NULL	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2"	-	no_errors
LRFN5	145581	broad.mit.edu	36	14	41425761	41425761	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	41425761	41425761	T	A	SNP	LRFN5	NM_152447	human	genbank	54_36p	1	validated	missense	c.183	p.N61K	1	superfamily_SSF52058	"HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like"	-	no_errors
LRFN5	145581	broad.mit.edu	36	14	41426911	41426911	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	41426911	41426911	C	T	SNP	LRFN5	NM_152447	human	genbank	54_36p	1	validated	missense	c.1333	p.R445C	1	"HMMPfam_fn3,superfamily_FN_III-like"	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058"	-	no_errors
LRFN5	145581	broad.mit.edu	36	14	41430889	41430889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	41430889	41430889	C	T	SNP	LRFN5	NM_152447	human	genbank	54_36p	1	validated	missense	c.2072	p.T691M	0.98	NULL	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058"	-	no_errors
LRFN5	145581	broad.mit.edu	36	14	41443117	41443117	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	41443117	41443117	G	T	SNP	LRFN5	NM_152447	human	genbank	54_36p	1	validated	nonsense	c.2149	p.E717*	1	NULL	"HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058"	-	no_errors
FSCB	84075	broad.mit.edu	36	14	44044601	44044601	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	14	44044601	44044601	T	A	SNP	FSCB	NM_032135	human	genbank	54_36p	-1	validated	missense	c.1340	p.E447V	0	NULL	NULL	-	no_errors
C14orf28	122525	broad.mit.edu	36	14	44439458	44439458	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	44439458	44439458	A	T	SNP	C14orf28	NM_001017923	human	genbank	54_36p	1	validated	missense	c.70	p.R24W	1	NULL	NULL	-	no_errors
PRPF39	55015	broad.mit.edu	36	14	44653189	44653191	+	In_Frame_Del	DEL	TAA	-	TAA	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	TAA	TAA	-	-	TAA	TAA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	44653189	44653191	TAA	-	DEL	PRPF39	NM_017922	human	genbank	54_36p	1	validated	in_frame_del	c.1811_1813	p.LKRKA604in_frame_del*	1.000:1.000:1.000	NULL	"superfamily_TPR-like,HMMSmart_SM00386"	"(deletion:cds_exon[44653136,44653210])"	no_errors
FANCM	57697	broad.mit.edu	36	14	44714326	44714326	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	44714326	44714326	T	C	SNP	FANCM	NM_020937	human	genbank	54_36p	1	reviewed	silent	c.2619	p.G873	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Restriction endonuclease-like,HMMPfam_ERCC4,superfamily_RuvA domain 2-like"	-	no_errors
FANCM	57697	broad.mit.edu	36	14	44727972	44727972	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	44727972	44727972	G	T	SNP	FANCM	NM_020937	human	genbank	54_36p	1	reviewed	missense	c.4997	p.R1666I	1	NULL	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_ERCC4,superfamily_RuvA domain 2-like,superfamily_Restriction endonuclease-like,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MDGA2	161357	broad.mit.edu	36	14	46412452	46412452	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	46412452	46412452	G	T	SNP	MDGA2	NM_182830	human	genbank	54_36p	-1	validated	missense	c.1792	p.P598T	1	"HMMSmart_MAM,HMMPfam_MAM"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_MAM,HMMPfam_MAM"	-	no_errors
MDGA2	161357	broad.mit.edu	36	14	46458974	46458974	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	46458974	46458974	G	T	SNP	MDGA2	NM_182830	human	genbank	54_36p	-1	validated	silent	c.1335	p.G445	0.95	superfamily_FN_III-like	"HMMPfam_MAM,HMMSmart_MAM,HMMSmart_IGc2,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
POLE2	5427	broad.mit.edu	36	14	49210610	49210610	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	49210610	49210610	C	T	SNP	POLE2	NM_002692	human	genbank	54_36p	-1	provisional	missense	c.398	p.R133Q	1	NULL	HMMPfam_DNA_pol_E_B	-	no_errors
KLHDC1	122773	broad.mit.edu	36	14	49265981	49265981	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	49265981	49265981	C	T	SNP	KLHDC1	NM_172193	human	genbank	54_36p	1	provisional	silent	c.675	p.H225	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2"	"HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2"	-	no_errors
KLHDC2	23588	broad.mit.edu	36	14	49314664	49314664	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	49314664	49314664	G	A	SNP	KLHDC2	NM_014315	human	genbank	54_36p	1	validated	silent	c.486	p.G162	0.94	superfamily_Galactose oxidase central domain	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMPfam_Kelch_1"	-	no_errors
ARF6	382	broad.mit.edu	36	14	49430725	49430725	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	14	49430725	49430725	A	G	SNP	ARF6	NM_001663	human	genbank	54_36p	1	reviewed	missense	c.521	p.K174R	1	"HMMSmart_SM00178,HMMSmart_SM00177"	"HMMPfam_Arf,HMMSmart_SM00178,HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,PatternScan_ARF"	-	no_errors
L2HGDH	79944	broad.mit.edu	36	14	49805729	49805729	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	14	49805729	49805729	T	C	SNP	L2HGDH	NM_024884	human	genbank	54_36p	-1	reviewed	missense	c.808	p.S270G	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO"	-	no_errors
L2HGDH	79944	broad.mit.edu	36	14	49839442	49839442	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	49839442	49839442	C	G	SNP	L2HGDH	NM_024884	human	genbank	54_36p	-1	reviewed	missense	c.184	p.A62P	1	"HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
NID2	22795	broad.mit.edu	36	14	51548066	51548066	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	51548066	51548066	G	C	SNP	NID2	NM_007361	human	genbank	54_36p	-1	validated	missense	c.3506	p.A1169G	0.07	"superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b"	###############################################################################################################################################################################################################################################################	-	no_errors
GPR137C	283554	broad.mit.edu	36	14	52170020	52170020	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	52170020	52170020	G	T	SNP	GPR137C	NM_001099652	human	genbank	54_36p	1	provisional	missense	c.890	p.G297V	1	NULL	NULL	-	no_errors
ERO1L	30001	broad.mit.edu	36	14	52189733	52189733	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	52189733	52189733	G	A	SNP	ERO1L	NM_014584	human	genbank	54_36p	-1	provisional	nonsense	c.859	p.R287*	1	"superfamily_ERO1,HMMPfam_ERO1"	"superfamily_ERO1,HMMPfam_ERO1"	-	no_errors
FERMT2	10979	broad.mit.edu	36	14	52396912	52396912	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	52396912	52396912	C	A	SNP	FERMT2	NM_006832	human	genbank	54_36p	-1	validated	missense	c.1624	p.A542S	1	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M"	"HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
DDHD1	80821	broad.mit.edu	36	14	52640269	52640269	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	52640269	52640269	C	T	SNP	DDHD1	NM_030637	human	genbank	54_36p	-1	provisional	silent	c.894	p.Q298	0.99	NULL	HMMPfam_DDHD	-	no_errors
CGRRF1	10668	broad.mit.edu	36	14	54059023	54059023	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	54059023	54059023	G	C	SNP	CGRRF1	NM_006568	human	genbank	54_36p	1	validated	missense	c.206	p.G69A	1	NULL	"PatternScan_ZF_RING_1,superfamily_SSF57850,HMMSmart_RING"	-	no_errors
CGRRF1	10668	broad.mit.edu	36	14	54074630	54074630	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	54074630	54074630	T	C	SNP	CGRRF1	NM_006568	human	genbank	54_36p	1	validated	missense	c.778	p.S260P	0.03	superfamily_SSF57850	"HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF57850"	-	no_errors
WDHD1	11169	broad.mit.edu	36	14	54518072	54518072	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	54518072	54518072	G	A	SNP	WDHD1	NM_007086	human	genbank	54_36p	-1	reviewed	missense	c.1999	p.H667Y	1	superfamily_WD40_like	"superfamily_WD40_like,HMMPfam_WD40,HMMSmart_WD40,PatternScan_WD_REPEATS_1,superfamily_HMG-box,HMMSmart_HMG"	-	no_errors
DLGAP5	9787	broad.mit.edu	36	14	54706022	54706022	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	54706022	54706022	G	C	SNP	DLGAP5	NM_014750	human	genbank	54_36p	-1	provisional	missense	c.1396	p.L466V	1	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
FBXO34	55030	broad.mit.edu	36	14	54887810	54887810	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	54887810	54887810	C	A	SNP	FBXO34	NM_017943	human	genbank	54_36p	1	validated	missense	c.949	p.L317I	1	NULL	"superfamily_SSF81383,HMMSmart_FBOX,HMMPfam_F-box"	-	no_errors
PELI2	57161	broad.mit.edu	36	14	55833216	55833216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	55833216	55833216	G	A	SNP	PELI2	NM_021255	human	genbank	54_36p	1	validated	missense	c.842	p.R281Q	1	HMMPfam_Pellino	HMMPfam_Pellino	-	no_errors
EXOC5	10640	broad.mit.edu	36	14	56768034	56768034	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	56768034	56768034	A	T	SNP	EXOC5	NM_006544	human	genbank	54_36p	-1	reviewed	missense	c.1091	p.I364N	1	HMMPfam_Sec10	HMMPfam_Sec10	-	no_errors
EXOC5	10640	broad.mit.edu	36	14	56780668	56780668	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	56780668	56780668	A	G	SNP	EXOC5	NM_006544	human	genbank	54_36p	-1	reviewed	silent	c.433	p.L145	1	HMMPfam_Sec10	HMMPfam_Sec10	-	no_errors
MUDENG	55745	broad.mit.edu	36	14	56822720	56822720	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	56822720	56822720	A	G	SNP	MUDENG	NM_018229	human	genbank	54_36p	1	validated	silent	c.1320	p.T440	1	"superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub"	"superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,HMMPfam_Adap_comp_sub"	-	no_errors
NAA30	122830	broad.mit.edu	36	14	56927998	56927998	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	56927998	56927998	C	A	SNP	NAT12	NM_001011713	human	genbank	54_36p	1	validated	silent	c.570	p.S190	0.75	NULL	"superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1"	-	no_errors
NAA30	122830	broad.mit.edu	36	14	56927999	56927999	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	56927999	56927999	C	T	SNP	NAT12	NM_001011713	human	genbank	54_36p	1	validated	silent	c.571	p.L191	0.68	NULL	"HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)"	-	no_errors
SLC35F4	341880	broad.mit.edu	36	14	57117782	57117782	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	57117782	57117782	A	T	SNP	SLC35F4	NM_001080455	human	genbank	54_36p	-1	inferred	missense	c.818	p.L273Q	1	"superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_DUF6"	"superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_DUF6"	-	no_errors
ARID4A	5926	broad.mit.edu	36	14	57901165	57901165	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	57901165	57901165	A	G	SNP	ARID4A	NM_002892	human	genbank	54_36p	1	reviewed	missense	c.2605	p.I869V	0.07	NULL	"HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00298"	-	no_errors
KIAA0586	9786	broad.mit.edu	36	14	58008728	58008728	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	58008728	58008728	A	G	SNP	KIAA0586	NM_014749	human	genbank	54_36p	1	validated	missense	c.2384	p.D795G	1	NULL	NULL	-	no_errors
DACT1	51339	broad.mit.edu	36	14	58182236	58182236	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	58182236	58182236	C	T	SNP	DACT1	NM_016651	human	genbank	54_36p	1	validated	missense	c.1142	p.P381L	0.04	NULL	NULL	-	no_errors
DAAM1	23002	broad.mit.edu	36	14	58891744	58891744	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	58891744	58891744	C	G	SNP	DAAM1	NM_014992	human	genbank	54_36p	1	reviewed	missense	c.2495	p.A832G	1	"superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	-	no_errors
C14orf135	64430	broad.mit.edu	36	14	59651732	59651732	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	59651732	59651732	A	G	SNP	C14orf135	NM_022495	human	genbank	54_36p	1	validated	missense	c.455	p.N152S	0.02	NULL	HMMPfam_Pecanex_C	-	no_errors
C14orf135	64430	broad.mit.edu	36	14	59661565	59661565	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	59661565	59661565	G	C	SNP	C14orf135	NM_022495	human	genbank	54_36p	1	validated	missense	c.2221	p.V741L	0.99	NULL	HMMPfam_Pecanex_C	-	no_errors
SIX1	6495	broad.mit.edu	36	14	60182811	60182811	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	60182811	60182811	C	A	SNP	SIX1	NM_005982	human	genbank	54_36p	-1	reviewed	missense	c.798	p.Q266H	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
SIX4	51804	broad.mit.edu	36	14	60256912	60256912	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	60256912	60256912	A	C	SNP	SIX4	NM_017420	human	genbank	54_36p	-1	validated	missense	c.868	p.S290A	1	superfamily_Homeodomain_like	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
MNAT1	4331	broad.mit.edu	36	14	60348548	60348548	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	60348548	60348548	C	G	SNP	MNAT1	NM_002431	human	genbank	54_36p	1	validated	missense	c.511	p.L171V	0.84	HMMPfam_MAT1	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_MAT1"	-	no_errors
KCNH5	27133	broad.mit.edu	36	14	62244875	62244875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	62244875	62244875	G	A	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	missense	c.2071	p.R691W	0.02	NULL	"superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
KCNH5	27133	broad.mit.edu	36	14	62553362	62553362	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	62553362	62553362	C	A	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	missense	c.137	p.G46V	1	superfamily_PYP-like sensor domain (PAS domain)	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
GPHB5	122876	broad.mit.edu	36	14	62854276	62854276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	62854276	62854276	A	G	SNP	GPHB5	NM_145171	human	genbank	54_36p	-1	validated	missense	c.41	p.L14P	0.99	NULL	NULL	-	no_errors
SYNE2	23224	broad.mit.edu	36	14	63588192	63588192	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	63588192	63588192	T	C	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	missense	c.7808	p.L2603P	0.09	NULL	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH"	-	no_errors
SYNE2	23224	broad.mit.edu	36	14	63612455	63612455	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	63612455	63612455	G	C	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	missense	c.10906	p.E3636Q	1	NULL	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
SYNE2	23224	broad.mit.edu	36	14	63674394	63674394	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	63674394	63674394	T	G	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	missense	c.14783	p.L4928R	0.05	"HMMSmart_SPEC,superfamily_Spectrin"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
SYNE2	23224	broad.mit.edu	36	14	63759661	63759661	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	63759661	63759661	A	C	SNP	SYNE2	NM_182914	human	genbank	54_36p	1	validated	missense	c.20192	p.Q6731P	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin"	-	no_errors
ZBTB25	7597	broad.mit.edu	36	14	64024422	64024422	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	64024422	64024422	G	A	SNP	ZBTB25	NM_006977	human	genbank	54_36p	-1	validated	missense	c.280	p.R94C	1	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZBTB25	7597	broad.mit.edu	36	14	64024495	64024495	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	64024495	64024495	T	G	SNP	ZBTB25	NM_006977	human	genbank	54_36p	-1	validated	missense	c.207	p.Q69H	0.99	"HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB"	"HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
HSPA2	3306	broad.mit.edu	36	14	64078539	64078539	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	64078539	64078539	G	A	SNP	HSPA2	NM_021979	human	genbank	54_36p	1	validated	missense	c.1219	p.E407K	1	"HMMPfam_HSP70,superfamily_SSF100920"	"superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934"	-	no_errors
SPTB	6710	broad.mit.edu	36	14	64329952	64329952	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	14	64329952	64329952	G	C	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.2182	p.L728V	1	"HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC"	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
SPTB	6710	broad.mit.edu	36	14	64329966	64329966	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	64329966	64329966	G	A	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.2168	p.A723V	0	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729"	-	no_errors
SPTB	6710	broad.mit.edu	36	14	64330975	64330975	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	64330975	64330975	G	C	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	silent	c.1758	p.A586	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729"	-	no_errors
SPTB	6710	broad.mit.edu	36	14	64333093	64333093	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	64333093	64333093	G	T	SNP	SPTB	NM_001024858	human	genbank	54_36p	-1	validated	missense	c.1276	p.R426S	1	"HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729"	-	no_errors
FNTB	2342	broad.mit.edu	36	14	64591083	64591083	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	64591083	64591083	G	A	SNP	FNTB	NM_002028	human	genbank	54_36p	1	validated	missense	c.1105	p.G369S	1	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Prenyltrans"	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Prenyltrans"	-	no_errors
FUT8	2530	broad.mit.edu	36	14	65205925	65205925	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	65205925	65205925	C	T	SNP	FUT8	NM_178154	human	genbank	54_36p	1	reviewed	missense	c.809	p.S270F	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
FAM71D	161142	broad.mit.edu	36	14	66741163	66741163	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	66741163	66741163	C	T	SNP	FAM71D	NM_173526	human	genbank	54_36p	1	validated	silent	c.516	p.S172	0.06	NULL	NULL	-	no_errors
EIF2S1	1965	broad.mit.edu	36	14	66901240	66901240	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	66901240	66901240	G	T	SNP	EIF2S1	NM_004094	human	genbank	54_36p	1	validated	missense	c.3	p.M1I	1	NULL	"superfamily_Nucleic acid-binding proteins,HMMPfam_S1,HMMSmart_SM00316,HMMPfam_EIF_2_alpha,superfamily_eIF-2-alpha C-terminal domain"	-	no_errors
PIGH	5283	broad.mit.edu	36	14	67130374	67130374	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	67130374	67130374	G	A	SNP	PIGH	NM_004569	human	genbank	54_36p	-1	reviewed	missense	c.229	p.L77F	1	NULL	HMMPfam_PIG-H	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67319340	67319340	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	67319340	67319340	G	T	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	silent	c.4282	p.R1428	0.96	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67322609	67322609	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	67322609	67322609	A	C	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	silent	c.3114	p.L1038	0.01	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67330180	67330180	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	14	67330180	67330180	C	T	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	silent	c.2451	p.L817	0	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67334190	67334190	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	67334190	67334190	G	A	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.2284	p.R762C	0.09	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67334698	67334698	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	67334698	67334698	A	G	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	silent	c.2034	p.F678	1	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67338572	67338572	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	67338572	67338572	G	A	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.1616	p.A539V	0.01	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67343890	67343890	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	67343890	67343890	C	T	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	silent	c.864	p.P288	0	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
ZFYVE26	23503	broad.mit.edu	36	14	67344228	67344228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	67344228	67344228	G	C	SNP	ZFYVE26	NM_015346	human	genbank	54_36p	-1	reviewed	missense	c.526	p.L176V	0.84	NULL	"HMMPfam_FYVE,HMMSmart_SM00064,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger"	-	no_errors
C14orf181	400223	broad.mit.edu	36	14	68332643	68332643	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	68332643	68332643	G	C	SNP	C14orf181	NM_207442	human	genbank	54_36p	-1	validated	missense	c.122	p.P41R	0	NULL	NULL	-	no_errors
DCAF5	8816	broad.mit.edu	36	14	68590696	68590696	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	68590696	68590696	A	T	SNP	WDR22	NM_003861	human	genbank	54_36p	-1	validated	missense	c.2460	p.S820R	1	NULL	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like"	-	no_errors
GALNTL1	57452	broad.mit.edu	36	14	68878199	68878199	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	68878199	68878199	C	T	SNP	GALNTL1	NM_020692	human	genbank	54_36p	1	provisional	silent	c.1236	p.F412	1	superfamily_Nucleotide-diphospho-sugar transferases	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458"	-	no_errors
KIAA0247	9766	broad.mit.edu	36	14	69241113	69241113	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	14	69241113	69241113	C	A	SNP	KIAA0247	NM_014734	human	genbank	54_36p	1	validated	missense	c.359	p.S120Y	1	NULL	"superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	-	no_errors
SLC10A1	6554	broad.mit.edu	36	14	69314964	69314964	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	69314964	69314964	T	G	SNP	SLC10A1	NM_003049	human	genbank	54_36p	-1	validated	missense	c.782	p.Q261P	1	NULL	HMMPfam_SBF	-	no_errors
SLC10A1	6554	broad.mit.edu	36	14	69333346	69333346	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	69333346	69333346	A	C	SNP	SLC10A1	NM_003049	human	genbank	54_36p	-1	validated	missense	c.280	p.L94V	1	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
SMOC1	64093	broad.mit.edu	36	14	69416213	69416213	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	69416213	69416213	C	T	SNP	SMOC1	NM_001034852	human	genbank	54_36p	1	validated	missense	c.65	p.S22F	0.38	NULL	"superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
SLC8A3	6547	broad.mit.edu	36	14	69703480	69703480	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	69703480	69703480	G	A	SNP	SLC8A3	NM_183002	human	genbank	54_36p	-1	reviewed	silent	c.1413	p.D471	1	"HMMSmart_SM00237,HMMPfam_Calx-beta"	"HMMPfam_Na_Ca_ex,HMMSmart_SM00237,HMMPfam_Calx-beta"	-	no_errors
MAP3K9	4293	broad.mit.edu	36	14	70345527	70345529	+	In_Frame_Del	DEL	CCT	-	CCT	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	CCT	CCT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	70345527	70345529	CCT	-	DEL	MAP3K9	NM_033141	human	genbank	54_36p	-1	validated	in_frame_del	c.115_113	p.E38in_frame_del	0.064:0.105:0.155	NULL	"superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Kinase_like,HMMSmart_TyrKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	"(deletion:cds_exon[70345236,70345641])"	no_errors
PCNX	22990	broad.mit.edu	36	14	70562597	70562597	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	14	70562597	70562597	G	A	SNP	PCNX	NM_014982	human	genbank	54_36p	1	validated	missense	c.3194	p.R1065H	1	NULL	HMMPfam_Pecanex_C	-	no_errors
DCAF4	26094	broad.mit.edu	36	14	72490687	72490687	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	72490687	72490687	T	A	SNP	WDR21A	NM_015604	human	genbank	54_36p	1	reviewed	missense	c.871	p.S291T	1	superfamily_WD40 repeat-like	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
RBM25	58517	broad.mit.edu	36	14	72648087	72648087	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	72648087	72648087	G	A	SNP	RBM25	NM_021239	human	genbank	54_36p	1	validated	missense	c.2116	p.V706I	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_PWI domain,HMMSmart_SM00311,HMMPfam_PWI"	-	no_errors
PAPLN	89932	broad.mit.edu	36	14	72789167	72789167	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	72789167	72789167	T	A	SNP	PAPLN	NM_173462	human	genbank	54_36p	1	validated	missense	c.944	p.M315K	1	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1"	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMSmart_KU,HMMPfam_Kunitz_BPTI,superfamily_Prot_inh_Kunz-m,PatternScan_BPTI_KUNITZ_1,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC"	-	no_errors
PAPLN	89932	broad.mit.edu	36	14	72800793	72800793	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	72800793	72800793	A	G	SNP	PAPLN	NM_173462	human	genbank	54_36p	1	validated	missense	c.2902	p.I968V	1	NULL	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,HMMSmart_IGc2,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
NUMB	8650	broad.mit.edu	36	14	72813185	72813185	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	72813185	72813185	T	C	SNP	NUMB	NM_001005743	human	genbank	54_36p	-1	reviewed	missense	c.1810	p.T604A	0	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,HMMPfam_NumbF"	-	no_errors
C14orf169	79697	broad.mit.edu	36	14	73028361	73028361	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	73028361	73028361	T	C	SNP	C14orf169	NM_024644	human	genbank	54_36p	1	validated	missense	c.886	p.C296R	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PNMA1	9240	broad.mit.edu	36	14	73249158	73249158	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	73249158	73249158	G	T	SNP	PNMA1	NM_006029	human	genbank	54_36p	-1	validated	missense	c.938	p.A313D	0.35	NULL	NULL	-	no_errors
C14orf43	91748	broad.mit.edu	36	14	73275501	73275501	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	73275501	73275501	G	A	SNP	C14orf43	NM_001043318	human	genbank	54_36p	-1	validated	missense	c.964	p.R322C	1	NULL	"HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	-	no_errors
C14orf43	91748	broad.mit.edu	36	14	73276041	73276041	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	73276041	73276041	A	C	SNP	C14orf43	NM_001043318	human	genbank	54_36p	-1	validated	missense	c.424	p.Y142D	0.2	NULL	"HMMPfam_ELM2,HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding"	-	no_errors
FAM161B	145483	broad.mit.edu	36	14	73481016	73481016	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	73481016	73481016	T	C	SNP	FAM161B	NM_152445	human	genbank	54_36p	-1	predicted	missense	c.700	p.M234V	0.92	HMMPfam_UPF0564	HMMPfam_UPF0564	-	no_errors
ALDH6A1	4329	broad.mit.edu	36	14	73597102	73597102	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	73597102	73597102	C	T	SNP	ALDH6A1	NM_005589	human	genbank	54_36p	-1	reviewed	missense	c.1604	p.R535H	1	NULL	"superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
VRTN	55237	broad.mit.edu	36	14	73893552	73893552	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	73893552	73893552	C	T	SNP	C14orf115	NM_018228	human	genbank	54_36p	1	validated	missense	c.313	p.R105W	1	NULL	HMMPfam_Transposase_8	-	no_errors
VRTN	55237	broad.mit.edu	36	14	73893578	73893578	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	73893578	73893578	G	A	SNP	C14orf115	NM_018228	human	genbank	54_36p	1	validated	silent	c.339	p.L113	1	NULL	HMMPfam_Transposase_8	-	no_errors
VRTN	55237	broad.mit.edu	36	14	73894675	73894675	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	73894675	73894675	C	T	SNP	C14orf115	NM_018228	human	genbank	54_36p	1	validated	missense	c.1436	p.A479V	0	NULL	HMMPfam_Transposase_8	-	no_errors
VRTN	55237	broad.mit.edu	36	14	73894783	73894783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Sequenom			Illumina GAIIx	14	73894783	73894783	C	T	SNP	C14orf115	NM_018228	human	genbank	54_36p	1	validated	missense	c.1544	p.A515V	0.5	NULL	HMMPfam_Transposase_8	-	no_errors
YLPM1	56252	broad.mit.edu	36	14	74300206	74300206	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	74300206	74300206	G	C	SNP	YLPM1	NM_019589	human	genbank	54_36p	1	validated	silent	c.261	p.P87	1	NULL	"HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
YLPM1	56252	broad.mit.edu	36	14	74334890	74334890	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	74334890	74334890	G	A	SNP	YLPM1	NM_019589	human	genbank	54_36p	1	validated	missense	c.3137	p.S1046N	0	NULL	"HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
YLPM1	56252	broad.mit.edu	36	14	74334998	74335001	+	Frame_Shift_Del	DEL	GGTT	-	GGTT	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GGTT	GGTT	-	-	GGTT	GGTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	74334998	74335001	GGTT	-	DEL	YLPM1	NM_019589	human	genbank	54_36p	1	validated	frame_shift_del	c.3245_3248	p.L1083fs	0.661:0.264:0.040:0.037	NULL	"HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"(deletion:cds_exon[74334036,74336153])"	no_errors
PROX2	283571	broad.mit.edu	36	14	74399290	74399290	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	74399290	74399290	A	T	SNP	PROX2	NM_001080408	human	genbank	54_36p	-1	provisional	nonsense	c.1001	p.L334*	0.94	NULL	"HMMPfam_Prox1,superfamily_Homeodomain-like"	-	no_errors
DLST	1743	broad.mit.edu	36	14	74437622	74437622	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	74437622	74437622	A	G	SNP	DLST	NM_001933	human	genbank	54_36p	1	validated	missense	c.1160	p.N387S	1	"HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases"	"superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,PatternScan_LIPOYL,HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases"	-	no_errors
EIF2B2	8892	broad.mit.edu	36	14	74545605	74545605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	74545605	74545605	G	A	SNP	EIF2B2	NM_014239	human	genbank	54_36p	1	validated	silent	c.1017	p.L339	1	superfamily_NagB/RpiA/CoA transferase-like	"HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like"	-	no_errors
MLH3	27030	broad.mit.edu	36	14	74584640	74584640	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	74584640	74584640	A	G	SNP	MLH3	NM_001040108	human	genbank	54_36p	-1	reviewed	missense	c.1472	p.F491S	0	NULL	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_DNA_mis_repair,HMMPfam_MutL_C"	-	no_errors
MLH3	27030	broad.mit.edu	36	14	74585341	74585341	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	74585341	74585341	T	C	SNP	MLH3	NM_001040108	human	genbank	54_36p	-1	reviewed	silent	c.771	p.R257	1	"HMMPfam_DNA_mis_repair,superfamily_Ribosomal protein S5 domain 2-like"	"HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_DNA_mis_repair,PatternScan_DNA_MISMATCH_REPAIR_1,HMMPfam_MutL_C,superfamily_Ribosomal protein S5 domain 2-like"	-	no_errors
FAM164C	79696	broad.mit.edu	36	14	74607132	74607132	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	74607132	74607132	T	A	SNP	FAM164C	NM_024643	human	genbank	54_36p	1	validated	missense	c.103	p.Y35N	0.72	NULL	NULL	-	no_errors
TTLL5	23093	broad.mit.edu	36	14	75281651	75281651	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	75281651	75281651	T	A	SNP	TTLL5	NM_015072	human	genbank	54_36p	1	validated	silent	c.1461	p.P487	1	NULL	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
C14orf118	55668	broad.mit.edu	36	14	75714093	75714093	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	75714093	75714093	A	T	SNP	C14orf118	NM_017926	human	genbank	54_36p	1	validated	missense	c.1062	p.K354N	1	NULL	NULL	-	no_errors
ANGEL1	23357	broad.mit.edu	36	14	76345445	76345445	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	76345445	76345445	G	A	SNP	ANGEL1	NM_015305	human	genbank	54_36p	-1	validated	missense	c.359	p.A120V	0.01	NULL	"HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos"	-	no_errors
TMEM63C	57156	broad.mit.edu	36	14	76785535	76785535	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	76785535	76785535	C	G	SNP	TMEM63C	NM_020431	human	genbank	54_36p	1	validated	missense	c.2019	p.F673L	1	HMMPfam_DUF221	HMMPfam_DUF221	-	no_errors
POMT2	29954	broad.mit.edu	36	14	76832350	76832350	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	76832350	76832350	C	A	SNP	POMT2	NM_013382	human	genbank	54_36p	-1	reviewed	silent	c.1026	p.V342	1	"superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472"	"HMMPfam_PMT,PatternScan_SERPIN,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR"	-	no_errors
SPTLC2	9517	broad.mit.edu	36	14	77057633	77057633	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	77057633	77057633	T	G	SNP	SPTLC2	NM_004863	human	genbank	54_36p	-1	validated	silent	c.1348	p.R450	1	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2"	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2"	-	no_errors
ALKBH1	8846	broad.mit.edu	36	14	77230865	77230865	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	77230865	77230865	C	T	SNP	ALKBH1	NM_006020	human	genbank	54_36p	-1	reviewed	missense	c.424	p.D142N	0.03	NULL	NULL	-	no_errors
NRXN3	9369	broad.mit.edu	36	14	79199991	79199991	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	79199991	79199991	G	A	SNP	NRXN3	NM_004796	human	genbank	54_36p	1	reviewed	missense	c.2443	p.G815S	1	"superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2"	"superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,HMMSmart_LamG,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m"	-	no_errors
C14orf145	145508	broad.mit.edu	36	14	80367273	80367273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	80367273	80367273	G	T	SNP	C14orf145	NM_152446	human	genbank	54_36p	-1	validated	missense	c.1176	p.D392E	1	NULL	NULL	-	no_errors
KCNK10	54207	broad.mit.edu	36	14	87721965	87721965	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	87721965	87721965	C	T	SNP	KCNK10	NM_138317	human	genbank	54_36p	-1	reviewed	silent	c.1299	p.P433	0.89	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	-	no_errors
PTPN21	11099	broad.mit.edu	36	14	88006112	88006112	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	14	88006112	88006112	G	C	SNP	PTPN21	NM_007039	human	genbank	54_36p	-1	reviewed	silent	c.2907	p.A969	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPN21	11099	broad.mit.edu	36	14	88016272	88016272	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	88016272	88016272	G	T	SNP	PTPN21	NM_007039	human	genbank	54_36p	-1	reviewed	missense	c.1256	p.P419H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ZC3H14	79882	broad.mit.edu	36	14	88104225	88104225	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	88104225	88104225	A	T	SNP	ZC3H14	NM_024824	human	genbank	54_36p	1	validated	missense	c.169	p.N57Y	1	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
ZC3H14	79882	broad.mit.edu	36	14	88109076	88109076	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	88109076	88109076	G	C	SNP	ZC3H14	NM_024824	human	genbank	54_36p	1	validated	missense	c.833	p.R278T	0.99	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
EML5	161436	broad.mit.edu	36	14	88199128	88199128	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	88199128	88199128	C	T	SNP	EML5	NM_183387	human	genbank	54_36p	-1	validated	silent	c.3498	p.E1166	1	superfamily_WD40 repeat-like	"HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1"	-	no_errors
TDP1	55775	broad.mit.edu	36	14	89525057	89525063	+	Frame_Shift_Del	DEL	GTCAGTT	-	GTCAGTT	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GTCAGTT	GTCAGTT	-	-	GTCAGTT	GTCAGTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	89525057	89525063	GTCAGTT	-	DEL	TDP1	NM_001008744	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1187_1193	p.G396fs	1.000:0.991:1.000:1.000:1.000:1.000:1.000	"HMMPfam_Tyr-DNA_phospho,superfamily_SSF56024"	"superfamily_SSF56024,HMMPfam_Tyr-DNA_phospho"	"(deletion:cds_exon[89525002,89525187])"	no_errors
C14orf102	55051	broad.mit.edu	36	14	89825232	89825232	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	89825232	89825232	C	T	SNP	C14orf102	NM_017970	human	genbank	54_36p	-1	validated	missense	c.2240	p.C747Y	1	superfamily_Prenyl_trans	"superfamily_Prenyl_trans,HMMPfam_DUF1740"	-	no_errors
C14orf102	55051	broad.mit.edu	36	14	89838915	89838915	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	89838915	89838915	T	G	SNP	C14orf102	NM_017970	human	genbank	54_36p	-1	validated	missense	c.1313	p.H438P	1	"HMMPfam_DUF1740,superfamily_Prenyl_trans"	"HMMPfam_DUF1740,superfamily_Prenyl_trans"	-	no_errors
TTC7B	145567	broad.mit.edu	36	14	90154079	90154079	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	90154079	90154079	A	T	SNP	TTC7B	NM_001010854	human	genbank	54_36p	-1	provisional	silent	c.1815	p.T605	1	superfamily_TPR-like	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2"	-	no_errors
C14orf159	80017	broad.mit.edu	36	14	90760915	90760915	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	90760915	90760915	C	T	SNP	C14orf159	NM_001102368	human	genbank	54_36p	1	validated	silent	c.1851	p.T617	0.01	NULL	HMMPfam_DUF1445	-	no_errors
CCDC88C	440193	broad.mit.edu	36	14	90815397	90815397	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	90815397	90815397	C	T	SNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	missense	c.4706	p.R1569Q	1	NULL	superfamily_Prefoldin	-	no_errors
CCDC88C	440193	broad.mit.edu	36	14	90825370	90825370	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	90825370	90825370	G	A	SNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	missense	c.4273	p.R1425C	0.93	NULL	superfamily_Prefoldin	-	no_errors
CCDC88C	440193	broad.mit.edu	36	14	90827168	90827169	+	Missense_Mutation	DNP	CA	CA	AC	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	90827168	90827169	CA	AC	DNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	missense	c.4126_4125	p.NA1375KS	1.000:1.000	NULL	superfamily_Prefoldin	-	no_errors
CCDC88C	440193	broad.mit.edu	36	14	90846027	90846028	+	Missense_Mutation	DNP	CA	CA	TG	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	90846027	90846028	CA	TG	DNP	CCDC88C	NM_001080414	human	genbank	54_36p	-1	validated	missense	c.2793_2792	p.L931P	1.000:1.000	NULL	superfamily_Prefoldin	-	no_errors
CATSPERB	79820	broad.mit.edu	36	14	91172645	91172645	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	91172645	91172645	G	C	SNP	CATSPERB	NM_024764	human	genbank	54_36p	-1	validated	missense	c.1619	p.A540G	0.27	NULL	NULL	-	no_errors
TRIP11	9321	broad.mit.edu	36	14	91508929	91508929	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	91508929	91508929	T	A	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	silent	c.5604	p.L1868	0.95	NULL	NULL	-	no_errors
TRIP11	9321	broad.mit.edu	36	14	91540959	91540959	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	91540959	91540959	C	A	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	missense	c.3114	p.K1038N	1	NULL	NULL	-	no_errors
TRIP11	9321	broad.mit.edu	36	14	91542457	91542457	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	14	91542457	91542457	T	G	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	missense	c.1616	p.E539A	1	NULL	NULL	-	no_errors
TRIP11	9321	broad.mit.edu	36	14	91550328	91550328	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	14	91550328	91550328	T	C	SNP	TRIP11	NM_004239	human	genbank	54_36p	-1	validated	silent	c.1170	p.L390	0.2	NULL	NULL	-	no_errors
CPSF2	53981	broad.mit.edu	36	14	91691307	91691307	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	91691307	91691307	G	T	SNP	CPSF2	NM_017437	human	genbank	54_36p	1	validated	missense	c.1329	p.M443I	1	NULL	"superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B,HMMPfam_RMMBL"	-	no_errors
GOLGA5	9950	broad.mit.edu	36	14	92352454	92352454	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	92352454	92352454	G	C	SNP	GOLGA5	NM_005113	human	genbank	54_36p	1	reviewed	missense	c.1426	p.E476Q	1	"HMMPfam_Golgin_A5,superfamily_Prefoldin"	"HMMPfam_Golgin_A5,superfamily_Prefoldin"	-	no_errors
GOLGA5	9950	broad.mit.edu	36	14	92352502	92352502	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	92352502	92352502	C	T	SNP	GOLGA5	NM_005113	human	genbank	54_36p	1	reviewed	missense	c.1474	p.L492F	1	"superfamily_Prefoldin,HMMPfam_Golgin_A5"	"superfamily_Prefoldin,HMMPfam_Golgin_A5"	-	no_errors
ITPK1	3705	broad.mit.edu	36	14	92494301	92494301	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	14	92494301	92494301	G	A	SNP	ITPK1	NM_014216	human	genbank	54_36p	-1	validated	missense	c.668	p.S223L	1	"HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like"	"HMMPfam_Ins134_P3_kin,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
MOAP1	64112	broad.mit.edu	36	14	92720042	92720042	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	92720042	92720042	T	C	SNP	MOAP1	NM_022151	human	genbank	54_36p	-1	reviewed	missense	c.299	p.N100S	0	NULL	NULL	-	no_errors
BTBD7	55727	broad.mit.edu	36	14	92778882	92778882	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	92778882	92778882	G	A	SNP	BTBD7	NM_001002860	human	genbank	54_36p	-1	validated	silent	c.2889	p.R963	0.97	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK"	-	no_errors
KIAA1409	57578	broad.mit.edu	36	14	93116303	93116353	+	In_Frame_Del	DEL	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	-	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	-	-	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	93116303	93116353	ACATTATTTCTATTATAAACAATGTCTTCCAAGCCCCCTGGGGGGGATCCC	-	DEL	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	in_frame_del	c.1958_2008	p.IISIINNVFQAPWGGSH654in_frame_del	###############################################################################################################################################################################################################################################################	NULL	NULL	"(deletion:cds_exon[93116248,93116475])"	no_errors
KIAA1409	57578	broad.mit.edu	36	14	93148948	93148948	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	93148948	93148948	C	T	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	silent	c.3276	p.D1092	1	NULL	NULL	-	no_errors
KIAA1409	57578	broad.mit.edu	36	14	93173385	93173385	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	14	93173385	93173385	A	G	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	silent	c.5373	p.P1791	0.93	NULL	NULL	-	no_errors
KIAA1409	57578	broad.mit.edu	36	14	93179705	93179705	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	93179705	93179705	G	C	SNP	KIAA1409	NM_020818	human	genbank	54_36p	1	validated	missense	c.5539	p.G1847R	0.97	NULL	NULL	-	no_errors
ASB2	51676	broad.mit.edu	36	14	93487194	93487194	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	93487194	93487194	C	T	SNP	ASB2	NM_016150	human	genbank	54_36p	-1	reviewed	missense	c.640	p.A214T	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,PatternScan_ODR_DC_2_1,PatternScan_C_TYPE_LECTIN_1,HMMSmart_SM00253,HMMPfam_SOCS_box"	-	no_errors
DDX24	57062	broad.mit.edu	36	14	93591272	93591272	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	93591272	93591272	G	A	SNP	DDX24	NM_020414	human	genbank	54_36p	-1	reviewed	silent	c.2001	p.T667	0.84	"superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C"	"superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C"	-	no_errors
SERPINA10	51156	broad.mit.edu	36	14	93826141	93826141	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	93826141	93826141	T	G	SNP	SERPINA10	NM_001100607	human	genbank	54_36p	-1	validated	missense	c.543	p.L181F	0	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"PatternScan_SERPIN,superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	-	no_errors
SERPINA9	327657	broad.mit.edu	36	14	93999249	93999249	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	93999249	93999249	C	A	SNP	SERPINA9	NM_175739	human	genbank	54_36p	-1	validated	missense	c.1242	p.M414I	0	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
SERPINA4	5267	broad.mit.edu	36	14	94099875	94099875	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	94099875	94099875	C	A	SNP	SERPINA4	NM_006215	human	genbank	54_36p	1	provisional	silent	c.303	p.I101	0.71	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
SERPINA5	5104	broad.mit.edu	36	14	94123603	94123603	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	94123603	94123603	G	C	SNP	SERPINA5	NM_000624	human	genbank	54_36p	1	validated	missense	c.151	p.D51H	0.43	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
SERPINA3	12	broad.mit.edu	36	14	94155545	94155545	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	94155545	94155545	T	C	SNP	SERPINA3	NM_001085	human	genbank	54_36p	1	reviewed	missense	c.904	p.S302P	0	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093"	"superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
SERPINA3	12	broad.mit.edu	36	14	94159877	94159877	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	94159877	94159877	C	G	SNP	SERPINA3	NM_001085	human	genbank	54_36p	1	reviewed	missense	c.1245	p.S415R	0.9	"HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins"	"HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins"	-	no_errors
BDKRB2	624	broad.mit.edu	36	14	95777005	95777005	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	95777005	95777005	G	A	SNP	BDKRB2	NM_000623	human	genbank	54_36p	1	reviewed	missense	c.587	p.R196Q	0.9	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
BDKRB1	623	broad.mit.edu	36	14	95799918	95799918	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	95799918	95799918	T	C	SNP	BDKRB1	NM_000710	human	genbank	54_36p	1	reviewed	missense	c.146	p.F49S	0	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
BDKRB1	623	broad.mit.edu	36	14	95800367	95800367	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	95800367	95800367	C	A	SNP	BDKRB1	NM_000710	human	genbank	54_36p	1	reviewed	missense	c.595	p.H199N	0.18	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
BDKRB1	623	broad.mit.edu	36	14	95800521	95800521	+	Missense_Mutation	SNP	C	C	T	rs2229459	by-hapmap	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	95800521	95800521	C	T	SNP	BDKRB1	NM_000710	human	genbank	54_36p	1	reviewed	missense	c.749	p.A250V	0	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
ATG2B	55102	broad.mit.edu	36	14	95858346	95858347	+	Splice_Site	INS	-	AA	-	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	-	-	AA	AA	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	95858346	95858347	-	AA	INS	ATG2B	NM_018036	human	genbank	54_36p	-1	validated	splice_site_ins	c.2737-3_2737-2	e18-2	0.995:0.579	-	-	-	no_errors
EVL	51466	broad.mit.edu	36	14	99664688	99664688	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	99664688	99664688	A	C	SNP	EVL	NM_016337	human	genbank	54_36p	1	validated	silent	c.567	p.P189	0.71	NULL	"HMMPfam_WH1,HMMSmart_WH1,HMMPfam_VASP_tetra,superfamily_SSF50729"	-	no_errors
EVL	51466	broad.mit.edu	36	14	99664688	99664688	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	99664688	99664688	A	C	SNP	EVL	NM_016337	human	genbank	54_36p	1	validated	silent	c.567	p.P189	0.71	NULL	"superfamily_SSF50729,HMMPfam_WH1,HMMSmart_WH1,HMMPfam_VASP_tetra"	-	no_errors
EVL	51466	broad.mit.edu	36	14	99673694	99673694	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	99673694	99673694	A	T	SNP	EVL	NM_016337	human	genbank	54_36p	1	validated	missense	c.991	p.S331C	1	NULL	"HMMPfam_WH1,HMMSmart_WH1,HMMPfam_VASP_tetra,superfamily_SSF50729"	-	no_errors
SLC25A29	123096	broad.mit.edu	36	14	99829383	99829383	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	99829383	99829383	C	A	SNP	SLC25A29	NM_001039355	human	genbank	54_36p	-1	validated	splice_site	c.162+1	e3+1	1	-	-	-	no_errors
WARS	7453	broad.mit.edu	36	14	99873122	99873169	+	Splice_Site	DEL	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	-	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	99873122	99873169	GGCTGTGGGCCCTTGGGGTTCCCTGCTCACCTTCCTGATCTGCTCGAG	-	DEL	WARS	NM_004184	human	genbank	54_36p	-1	reviewed	splice_site_del	c.1254+19_1254+1	e10-1	###############################################################################################################################################################################################################################################################	-	-	"(deletion:intron[99871127,99873151], cds_exon[99873152,99873292])"	no_errors
DLK1	8788	broad.mit.edu	36	14	100270317	100270317	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	100270317	100270317	C	T	SNP	DLK1	NM_003836	human	genbank	54_36p	1	validated	silent	c.483	p.G161	1	"HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2"	"HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_ASX_HYDROXYL"	-	no_errors
DLK1	8788	broad.mit.edu	36	14	100270974	100270974	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	100270974	100270974	C	T	SNP	DLK1	NM_003836	human	genbank	54_36p	1	validated	silent	c.1140	p.D380	0	NULL	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin"	-	no_errors
DIO3	1735	broad.mit.edu	36	14	101097957	101097957	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	101097957	101097957	A	T	SNP	DIO3	NM_001362	human	genbank	54_36p	1	reviewed	missense	c.293	p.D98V	1	HMMPfam_T4_deiodinase	HMMPfam_T4_deiodinase	-	pseudogene
DIO3	1735	broad.mit.edu	36	14	101098050	101098050	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101098050	101098050	C	T	SNP	DIO3	NM_001362	human	genbank	54_36p	1	reviewed	missense	c.386	p.A129V	0.08	HMMPfam_T4_deiodinase	HMMPfam_T4_deiodinase	-	pseudogene
DIO3	1735	broad.mit.edu	36	14	101098382	101098382	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	101098382	101098382	A	G	SNP	DIO3	NM_001362	human	genbank	54_36p	1	reviewed	missense	c.718	p.S240G	0.98	HMMPfam_T4_deiodinase	HMMPfam_T4_deiodinase	-	pseudogene
DYNC1H1	1778	broad.mit.edu	36	14	101515924	101515924	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101515924	101515924	A	G	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	missense	c.634	p.M212V	0.07	NULL	"HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
DYNC1H1	1778	broad.mit.edu	36	14	101531342	101531342	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101531342	101531342	T	C	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	silent	c.3516	p.Y1172	0.99	NULL	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540"	-	no_errors
DYNC1H1	1778	broad.mit.edu	36	14	101544407	101544407	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	101544407	101544407	C	G	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	missense	c.5957	p.S1986C	1	"HMMSmart_AAA,superfamily_SSF52540"	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540"	-	no_errors
DYNC1H1	1778	broad.mit.edu	36	14	101558972	101558972	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101558972	101558972	T	A	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	splice_site	c.8637+2	e43+2	0.99	-	-	-	no_errors
DYNC1H1	1778	broad.mit.edu	36	14	101562692	101562692	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101562692	101562692	T	A	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	nonsense	c.8666	p.L2889*	1	superfamily_SSF52540	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540"	-	no_errors
DYNC1H1	1778	broad.mit.edu	36	14	101574586	101574586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101574586	101574586	C	G	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	missense	c.10945	p.L3649V	1	NULL	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540"	-	no_errors
DYNC1H1	1778	broad.mit.edu	36	14	101575562	101575562	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101575562	101575562	T	C	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	missense	c.11521	p.Y3841H	1	NULL	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540"	-	no_errors
DYNC1H1	1778	broad.mit.edu	36	14	101586624	101586624	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101586624	101586624	C	T	SNP	DYNC1H1	NM_001376	human	genbank	54_36p	1	reviewed	missense	c.13912	p.R4638W	1	HMMPfam_Dynein_heavy	"HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540"	-	no_errors
HSP90AA1	3320	broad.mit.edu	36	14	101621436	101621436	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101621436	101621436	C	G	SNP	HSP90AA1	NM_001017963	human	genbank	54_36p	-1	validated	missense	c.981	p.E327D	1	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HSP90"	###############################################################################################################################################################################################################################################################	-	no_errors
ZNF839	55778	broad.mit.edu	36	14	101875210	101875210	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	101875210	101875210	G	A	SNP	ZNF839	NM_018335	human	genbank	54_36p	1	validated	silent	c.1824	p.V608	0.02	NULL	PatternScan_ABC_TRANSPORTER_1	-	no_errors
RCOR1	23186	broad.mit.edu	36	14	102237370	102237370	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	102237370	102237370	G	C	SNP	RCOR1	NM_015156	human	genbank	54_36p	1	validated	missense	c.439	p.D147H	1	HMMPfam_ELM2	"HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding"	-	no_errors
CDC42BPB	9578	broad.mit.edu	36	14	102481752	102481752	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	102481752	102481752	C	G	SNP	CDC42BPB	NM_006035	human	genbank	54_36p	-1	reviewed	missense	c.3811	p.V1271L	1	"HMMPfam_CNH,HMMSmart_CNH"	###############################################################################################################################################################################################################################################################	-	no_errors
C14orf73	91828	broad.mit.edu	36	14	102644578	102644578	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	102644578	102644578	G	C	SNP	C14orf73	NM_001077594	human	genbank	54_36p	1	validated	missense	c.1947	p.E649D	0.89	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors
BAG5	9529	broad.mit.edu	36	14	103097175	103097175	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	103097175	103097175	A	C	SNP	BAG5	NM_001015049	human	genbank	54_36p	-1	reviewed	missense	c.203	p.V68G	0.99	"HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain"	"HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain"	-	no_errors
XRCC3	7517	broad.mit.edu	36	14	103247142	103247142	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	103247142	103247142	A	C	SNP	XRCC3	NM_001100118	human	genbank	54_36p	-1	reviewed	missense	c.36	p.I12M	0.88	NULL	"HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
PPP1R13B	23368	broad.mit.edu	36	14	103289126	103289126	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	103289126	103289126	C	T	SNP	PPP1R13B	NM_015316	human	genbank	54_36p	-1	reviewed	silent	c.792	p.A264	0.3	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
TDRD9	122402	broad.mit.edu	36	14	103527287	103527287	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	103527287	103527287	C	T	SNP	TDRD9	NM_153046	human	genbank	54_36p	1	validated	nonsense	c.298	p.R100*	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333"	-	no_errors
ADSSL1	122622	broad.mit.edu	36	14	104278509	104278509	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104278509	104278509	A	G	SNP	ADSSL1	NM_199165	human	genbank	54_36p	1	validated	missense	c.806	p.E269G	1	"HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540"	"HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540,PatternScan_ADENYLOSUCCIN_SYN_2"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104479038	104479038	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104479038	104479038	G	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.13795	p.Q4599K	0.05	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104479745	104479745	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104479745	104479745	T	A	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.13088	p.D4363V	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104480969	104480969	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104480969	104480969	G	A	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.11864	p.S3955F	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104483452	104483452	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104483452	104483452	C	A	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.9381	p.G3127	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104483894	104483894	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104483894	104483894	A	C	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.8939	p.M2980R	1	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104485644	104485680	+	Frame_Shift_Del	DEL	GGCCGGCTCCCTCCGGCACGGGGCCCTCTGGGAGTTT	-	GGCCGGCTCCCTCCGGCACGGGGCCCTCTGGGAGTTT	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	GGCCGGCTCCCTCCGGCACGGGGCCCTCTGGGAGTTT	GGCCGGCTCCCTCCGGCACGGGGCCCTCTGGGAGTTT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	14	104485644	104485680	GGCCGGCTCCCTCCGGCACGGGGCCCTCTGGGAGTTT	-	DEL	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	frame_shift_del	c.7189_7153	p.K2385fs	0.001:0.000:0.000:0.000:0.000:0.001:0.011:0.013:0.025:0.000:0.000:0.005:0.008:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.012:0.014:0.021:0.017:0.002:0.069:0.067:0.013:0.021:0.000:0.000:0.000:0.001	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin"	"(deletion:cds_exon[104475445,104492181])"	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104486219	104486219	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104486219	104486219	G	T	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.6614	p.P2205H	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104487289	104487289	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104487289	104487289	C	G	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.5544	p.V1848	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104489803	104489803	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104489803	104489803	T	C	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	silent	c.3030	p.V1010	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
AHNAK2	113146	broad.mit.edu	36	14	104491545	104491545	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	14	104491545	104491545	C	G	SNP	AHNAK2	NM_138420	human	genbank	54_36p	-1	validated	missense	c.1288	p.E430Q	0	NULL	"HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
GPR132	29933	broad.mit.edu	36	14	104589067	104589067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104589067	104589067	C	T	SNP	GPR132	NM_013345	human	genbank	54_36p	-1	reviewed	missense	c.452	p.R151Q	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
BRF1	2972	broad.mit.edu	36	14	104756594	104756594	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104756594	104756594	T	C	SNP	BRF1	NM_001519	human	genbank	54_36p	-1	reviewed	silent	c.1398	p.E466	1	HMMPfam_BRF1	"HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB,HMMPfam_BRF1"	-	no_errors
PACS2	23241	broad.mit.edu	36	14	104885875	104885875	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104885875	104885875	G	T	SNP	PACS2	NM_001100913	human	genbank	54_36p	1	validated	missense	c.120	p.R40S	1	NULL	HMMPfam_Pacs-1	-	no_errors
PACS2	23241	broad.mit.edu	36	14	104920815	104920815	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	14	104920815	104920815	T	C	SNP	PACS2	NM_001100913	human	genbank	54_36p	1	validated	missense	c.1700	p.I567T	0.95	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors
POTEB	339010	broad.mit.edu	36	15	19336052	19336052	+	Silent	SNP	A	A	T	rs28566570	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	19336052	19336052	A	T	SNP	POTEB	NM_207355	human	genbank	54_36p	-1	validated	silent	c.249	p.S83	0.03	NULL	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
OR4N4	283694	broad.mit.edu	36	15	19883887	19883887	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	19883887	19883887	G	C	SNP	OR4N4	NM_001005241	human	genbank	54_36p	1	provisional	silent	c.51	p.L17	0.01	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR4N4	283694	broad.mit.edu	36	15	19883929	19883929	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	19883929	19883929	C	A	SNP	OR4N4	NM_001005241	human	genbank	54_36p	1	provisional	silent	c.93	p.I31	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
MKRN3	7681	broad.mit.edu	36	15	21362248	21362248	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	15	21362248	21362248	C	T	SNP	MKRN3	NM_005664	human	genbank	54_36p	1	reviewed	missense	c.226	p.P76S	0	NULL	"HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
NDN	4692	broad.mit.edu	36	15	21483337	21483337	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	21483337	21483337	G	A	SNP	NDN	NM_002487	human	genbank	54_36p	-1	reviewed	missense	c.121	p.P41S	0.02	NULL	HMMPfam_MAGE	-	no_errors
C15orf2	23742	broad.mit.edu	36	15	22472345	22472345	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	22472345	22472345	G	A	SNP	C15orf2	NM_018958	human	genbank	54_36p	1	validated	missense	c.238	p.A80T	0	NULL	NULL	-	no_errors
C15orf2	23742	broad.mit.edu	36	15	22472428	22472428	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	22472428	22472428	G	T	SNP	C15orf2	NM_018958	human	genbank	54_36p	1	validated	missense	c.321	p.R107S	0	NULL	NULL	-	no_errors
C15orf2	23742	broad.mit.edu	36	15	22472629	22472629	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	22472629	22472629	C	T	SNP	C15orf2	NM_018958	human	genbank	54_36p	1	validated	silent	c.522	p.D174	0	NULL	NULL	-	no_errors
C15orf2	23742	broad.mit.edu	36	15	22473975	22473975	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	22473975	22473975	C	A	SNP	C15orf2	NM_018958	human	genbank	54_36p	1	validated	missense	c.1868	p.P623Q	0	NULL	NULL	-	no_errors
C15orf2	23742	broad.mit.edu	36	15	22475358	22475358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	22475358	22475358	C	T	SNP	C15orf2	NM_018958	human	genbank	54_36p	1	validated	missense	c.3251	p.A1084V	0	NULL	NULL	-	no_errors
ATP10A	57194	broad.mit.edu	36	15	23477097	23477097	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	23477097	23477097	C	A	SNP	ATP10A	NM_024490	human	genbank	54_36p	-1	reviewed	missense	c.3631	p.A1211S	0.95	NULL	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3"	-	no_errors
GABRB3	2562	broad.mit.edu	36	15	24344296	24344296	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	24344296	24344296	C	T	SNP	GABRB3	NM_000814	human	genbank	54_36p	-1	reviewed	missense	c.1159	p.D387N	0.75	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
OCA2	4948	broad.mit.edu	36	15	25902144	25902144	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	25902144	25902144	G	C	SNP	OCA2	NM_000275	human	genbank	54_36p	-1	reviewed	missense	c.1445	p.T482S	1	HMMPfam_CitMHS	HMMPfam_CitMHS	-	no_errors
OCA2	4948	broad.mit.edu	36	15	25934898	25934898	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	25934898	25934898	A	G	SNP	OCA2	NM_000275	human	genbank	54_36p	-1	reviewed	silent	c.837	p.N279	1	NULL	HMMPfam_CitMHS	-	no_errors
HERC2	8924	broad.mit.edu	36	15	26081966	26081966	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	26081966	26081966	T	A	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.10615	p.S3539C	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC2	8924	broad.mit.edu	36	15	26132622	26132622	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	15	26132622	26132622	C	T	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.6647	p.R2216H	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC2	8924	broad.mit.edu	36	15	26148035	26148035	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	26148035	26148035	G	A	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	missense	c.5173	p.R1725W	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC2	8924	broad.mit.edu	36	15	26152448	26152448	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	26152448	26152448	G	A	SNP	HERC2	NM_004667	human	genbank	54_36p	-1	validated	silent	c.4308	p.V1436	0.97	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
TJP1	7082	broad.mit.edu	36	15	27781168	27781168	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	27781168	27781168	G	C	SNP	TJP1	NM_003257	human	genbank	54_36p	-1	validated	missense	c.5170	p.Q1724E	1	"HMMPfam_ZU5,HMMSmart_SM00218"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218"	-	no_errors
TJP1	7082	broad.mit.edu	36	15	27798088	27798104	+	Frame_Shift_Del	DEL	TGGGCCCTGCTGAAGGG	-	TGGGCCCTGCTGAAGGG	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	TGGGCCCTGCTGAAGGG	TGGGCCCTGCTGAAGGG	-	-	TGGGCCCTGCTGAAGGG	TGGGCCCTGCTGAAGGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	15	27798088	27798104	TGGGCCCTGCTGAAGGG	-	DEL	TJP1	NM_003257	human	genbank	54_36p	-1	validated	frame_shift_del	c.3550_3534	p.H1178fs	0.213:0.126:0.223:0.184:0.005:0.007:0.001:0.000:0.000:0.000:0.000:0.008:0.004:0.006:0.103:0.086:0.089	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218"	"(deletion:cds_exon[27797762,27798634])"	no_errors
TJP1	7082	broad.mit.edu	36	15	27812622	27812622	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	27812622	27812622	C	T	SNP	TJP1	NM_003257	human	genbank	54_36p	-1	validated	silent	c.1704	p.E568	0.99	"superfamily_SH3-domain,HMMPfam_SH3_2"	"HMMPfam_ZU5,HMMSmart_SM00218,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_SH3_2,HMMPfam_Gua_kin_assoc_C,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MTMR10	54893	broad.mit.edu	36	15	29038406	29038406	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	29038406	29038406	C	T	SNP	MTMR10	NM_017762	human	genbank	54_36p	-1	validated	missense	c.887	p.R296Q	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related"	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related"	-	no_errors
MTMR10	54893	broad.mit.edu	36	15	29070994	29070994	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	29070994	29070994	G	A	SNP	MTMR10	NM_017762	human	genbank	54_36p	-1	validated	missense	c.8	p.S3F	0.94	NULL	"HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
TRPM1	4308	broad.mit.edu	36	15	29105687	29105687	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	29105687	29105687	C	T	SNP	TRPM1	NM_002420	human	genbank	54_36p	-1	reviewed	silent	c.3510	p.K1170	1	NULL	HMMPfam_Ion_trans	-	no_errors
TRPM1	4308	broad.mit.edu	36	15	29117636	29117636	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	29117636	29117636	G	A	SNP	TRPM1	NM_002420	human	genbank	54_36p	-1	reviewed	missense	c.2276	p.P759L	1	NULL	HMMPfam_Ion_trans	-	no_errors
FMN1	342184	broad.mit.edu	36	15	30853848	30853848	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	30853848	30853848	C	G	SNP	FMN1	NM_001103184	human	genbank	54_36p	-1	provisional	splice_site	c.3547-1	e17-1	1	-	-	-	no_errors
RYR3	6263	broad.mit.edu	36	15	31646215	31646215	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	31646215	31646215	G	A	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	silent	c.1191	p.L397	1	"HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)"	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
RYR3	6263	broad.mit.edu	36	15	31680950	31680950	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	31680950	31680950	G	T	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	silent	c.1827	p.G609	1	HMMPfam_RYDR_ITPR	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR3	6263	broad.mit.edu	36	15	31682691	31682691	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	31682691	31682691	C	T	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	silent	c.1998	p.I666	0.97	"HMMPfam_SPRY,HMMSmart_SM00449"	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR3	6263	broad.mit.edu	36	15	31775970	31775970	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	31775970	31775970	G	T	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	missense	c.6120	p.M2040I	1	HMMPfam_RYDR_ITPR	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR3	6263	broad.mit.edu	36	15	31819358	31819358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	31819358	31819358	C	T	SNP	RYR3	NM_001036	human	genbank	54_36p	1	validated	missense	c.7690	p.P2564S	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
C15orf29	79768	broad.mit.edu	36	15	32226727	32226727	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	15	32226727	32226727	G	C	SNP	C15orf29	NM_024713	human	genbank	54_36p	-1	validated	missense	c.664	p.L222V	1	NULL	NULL	-	no_errors
SLC12A6	9990	broad.mit.edu	36	15	32315550	32315550	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	32315550	32315550	G	A	SNP	SLC12A6	NM_133647	human	genbank	54_36p	-1	reviewed	missense	c.3185	p.A1062V	0.99	NULL	"HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1"	-	no_errors
C15orf55	256646	broad.mit.edu	36	15	32436004	32436004	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	32436004	32436004	G	T	SNP	C15orf55	NM_175741	human	genbank	54_36p	1	validated	nonsense	c.2419	p.G807*	0	NULL	NULL	-	no_errors
C15orf55	256646	broad.mit.edu	36	15	32436146	32436146	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	15	32436146	32436146	C	T	SNP	C15orf55	NM_175741	human	genbank	54_36p	1	validated	missense	c.2561	p.S854F	0.05	NULL	NULL	-	no_errors
GJD2	57369	broad.mit.edu	36	15	32832807	32832807	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	32832807	32832807	T	C	SNP	GJD2	NM_020660	human	genbank	54_36p	-1	provisional	missense	c.130	p.T44A	1	"HMMPfam_Connexin,HMMSmart_CNX"	"HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2"	-	no_errors
AQR	9716	broad.mit.edu	36	15	33018270	33018270	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	33018270	33018270	G	A	SNP	AQR	NM_014691	human	genbank	54_36p	-1	validated	silent	c.678	p.I226	1	NULL	superfamily_SSF52540	-	no_errors
C15orf41	728257	broad.mit.edu	36	15	34659362	34659362	+	5'Flank	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	34659362	34659362	G	C	SNP	LOC728257	XR_015358	human	genbank	54_36p	1	model	5_prime_flanking_region	c.-37157	NULL	1	-	-	-	pseudogene
SPRED1	161742	broad.mit.edu	36	15	36430560	36430560	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	36430560	36430560	C	G	SNP	SPRED1	NM_152594	human	genbank	54_36p	1	reviewed	silent	c.738	p.V246	0.99	NULL	"HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_Sprouty"	-	no_errors
THBS1	7057	broad.mit.edu	36	15	37663834	37663834	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	15	37663834	37663834	T	A	SNP	THBS1	NM_003246	human	genbank	54_36p	1	reviewed	silent	c.945	p.P315	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
THBS1	7057	broad.mit.edu	36	15	37668063	37668063	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	37668063	37668063	G	C	SNP	THBS1	NM_003246	human	genbank	54_36p	1	reviewed	missense	c.1516	p.V506L	1	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat"	###############################################################################################################################################################################################################################################################	-	no_errors
GPR176	11245	broad.mit.edu	36	15	37880903	37880903	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	37880903	37880903	G	T	SNP	GPR176	NM_007223	human	genbank	54_36p	-1	provisional	missense	c.1270	p.P424T	0.39	NULL	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
EIF2AK4	440275	broad.mit.edu	36	15	38069855	38069855	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	38069855	38069855	C	A	SNP	EIF2AK4	NM_001013703	human	genbank	54_36p	1	validated	missense	c.2616	p.D872E	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
PAK6	56924	broad.mit.edu	36	15	38344471	38344471	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	38344471	38344471	C	A	SNP	PAK6	NM_020168	human	genbank	54_36p	1	reviewed	missense	c.193	p.Q65K	1	HMMPfam_PBD	"HMMPfam_PBD,HMMSmart_SM00285,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
PAK6	56924	broad.mit.edu	36	15	38352839	38352839	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	38352839	38352839	G	C	SNP	PAK6	NM_020168	human	genbank	54_36p	1	reviewed	missense	c.1491	p.R497S	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMPfam_PBD,HMMSmart_SM00285,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
PLCB2	5330	broad.mit.edu	36	15	38368263	38368263	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	38368263	38368263	A	C	SNP	PLCB2	NM_004573	human	genbank	54_36p	-1	validated	missense	c.3503	p.L1168R	0	NULL	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C"	-	no_errors
PLCB2	5330	broad.mit.edu	36	15	38378119	38378119	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	38378119	38378119	G	C	SNP	PLCB2	NM_004573	human	genbank	54_36p	-1	validated	missense	c.933	p.H311Q	0.56	"HMMPfam_efhand_like,superfamily_EF-hand"	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PLC-beta_C,HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand"	-	no_errors
PLCB2	5330	broad.mit.edu	36	15	38381454	38381454	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	38381454	38381454	C	T	SNP	PLCB2	NM_004573	human	genbank	54_36p	-1	validated	missense	c.578	p.G193D	1	superfamily_EF-hand	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PLC-beta_C,HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand"	-	no_errors
DISP2	85455	broad.mit.edu	36	15	38448441	38448441	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	38448441	38448441	T	C	SNP	DISP2	NM_033510	human	genbank	54_36p	1	reviewed	missense	c.2836	p.W946R	1	superfamily_SSF82866	superfamily_SSF82866	-	no_errors
DISP2	85455	broad.mit.edu	36	15	38448638	38448638	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	38448638	38448638	G	A	SNP	DISP2	NM_033510	human	genbank	54_36p	1	reviewed	silent	c.3033	p.E1011	0.94	superfamily_SSF82866	superfamily_SSF82866	-	no_errors
DISP2	85455	broad.mit.edu	36	15	38448827	38448827	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	38448827	38448827	C	A	SNP	DISP2	NM_033510	human	genbank	54_36p	1	reviewed	silent	c.3222	p.G1074	0.24	superfamily_SSF82866	superfamily_SSF82866	-	no_errors
DISP2	85455	broad.mit.edu	36	15	38449614	38449614	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	38449614	38449614	C	T	SNP	DISP2	NM_033510	human	genbank	54_36p	1	reviewed	missense	c.4009	p.R1337W	1	NULL	superfamily_SSF82866	-	no_errors
IVD	3712	broad.mit.edu	36	15	38485439	38485439	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	38485439	38485439	A	C	SNP	IVD	NM_002225	human	genbank	54_36p	1	reviewed	missense	c.119	p.N40T	1	NULL	"superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2"	-	no_errors
VPS18	57617	broad.mit.edu	36	15	38978947	38978947	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	38978947	38978947	C	T	SNP	VPS18	NM_020857	human	genbank	54_36p	1	reviewed	silent	c.639	p.G213	0.99	NULL	"HMMPfam_Pep3_Vps18,superfamily_ARM repeat"	-	no_errors
INO80	54617	broad.mit.edu	36	15	39063352	39063352	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39063352	39063352	G	A	SNP	INO80	NM_017553	human	genbank	54_36p	-1	validated	silent	c.4137	p.D1379	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
INO80	54617	broad.mit.edu	36	15	39171602	39171602	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39171602	39171602	T	C	SNP	INO80	NM_017553	human	genbank	54_36p	-1	validated	missense	c.452	p.N151S	0.94	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
EXD1	161829	broad.mit.edu	36	15	39275431	39275432	+	Missense_Mutation	DNP	TT	TT	AA	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39275431	39275432	TT	AA	DNP	EXD1	NM_152596	human	genbank	54_36p	-1	provisional	missense	c.457_456	p.RI152SF	1.000:0.998	"superfamily_Ribonuclease H-like,HMMSmart_SM00474,HMMPfam_3_5_exonuc"	"superfamily_Ribonuclease H-like,HMMSmart_SM00474,HMMPfam_3_5_exonuc"	-	no_errors
RHOV	171177	broad.mit.edu	36	15	39358311	39358311	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39358311	39358311	G	A	SNP	CHP	NM_007236	human	genbank	54_36p	1	reviewed	missense	c.466	p.A156T	1	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand"	-	no_errors
NUSAP1	51203	broad.mit.edu	36	15	39428673	39428673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39428673	39428673	G	A	SNP	NUSAP1	NM_018454	human	genbank	54_36p	1	validated	missense	c.248	p.G83D	0	NULL	NULL	-	no_errors
RTF1	23168	broad.mit.edu	36	15	39555255	39555255	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39555255	39555255	A	G	SNP	RTF1	NM_015138	human	genbank	54_36p	1	validated	silent	c.1053	p.E351	1	NULL	"HMMSmart_Plus3,HMMPfam_Plus-3"	-	no_errors
LTK	4058	broad.mit.edu	36	15	39583588	39583588	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39583588	39583588	C	G	SNP	LTK	NM_002344	human	genbank	54_36p	-1	reviewed	missense	c.2493	p.W831C	0.11	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II"	-	no_errors
TYRO3	7301	broad.mit.edu	36	15	39646884	39646884	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39646884	39646884	C	G	SNP	TYRO3	NM_006293	human	genbank	54_36p	1	provisional	missense	c.818	p.A273G	1	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
MGA	23269	broad.mit.edu	36	15	39808680	39808680	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39808680	39808680	C	G	SNP	MGA	NM_001080541	human	genbank	54_36p	1	provisional	silent	c.3684	p.V1228	1	NULL	"superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353"	-	no_errors
MGA	23269	broad.mit.edu	36	15	39828855	39828855	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39828855	39828855	A	G	SNP	MGA	NM_001080541	human	genbank	54_36p	1	provisional	missense	c.5905	p.T1969A	1	NULL	"HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,superfamily_HLH helix-loop-helix DNA-binding domain,PatternScan_TBOX_2"	-	no_errors
MGA	23269	broad.mit.edu	36	15	39839925	39839925	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39839925	39839925	G	A	SNP	MGA	NM_001080541	human	genbank	54_36p	1	provisional	missense	c.7451	p.R2484Q	1	"HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain"	"HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,superfamily_HLH helix-loop-helix DNA-binding domain,PatternScan_TBOX_2"	-	no_errors
JMJD7-PLA2G4B	8681	broad.mit.edu	36	15	39916423	39916423	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39916423	39916423	C	G	SNP	JMJD7-PLA2G4B	ENST00000335032	human	ensembl	54_36p	1	known	missense	c.855	p.C285W	1	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558"	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558"	-	no_errors
JMJD7-PLA2G4B	8681	broad.mit.edu	36	15	39924508	39924508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39924508	39924508	G	C	SNP	JMJD7-PLA2G4B	NM_005090	human	genbank	54_36p	1	validated	missense	c.1880	p.S627T	0.36	"HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	-	no_errors
SPTBN5	51332	broad.mit.edu	36	15	39932820	39932820	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39932820	39932820	G	T	SNP	SPTBN5	NM_016642	human	genbank	54_36p	-1	validated	nonsense	c.10098	p.C3366*	0.01	"superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SPTBN5	51332	broad.mit.edu	36	15	39955714	39955715	+	Missense_Mutation	DNP	CA	CA	TT	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39955714	39955715	CA	TT	DNP	SPTBN5	NM_016642	human	genbank	54_36p	-1	validated	missense	c.4012_4011	p.A1338T	0.000:0.000	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like"	-	no_errors
SPTBN5	51332	broad.mit.edu	36	15	39960656	39960656	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39960656	39960656	G	A	SNP	SPTBN5	NM_016642	human	genbank	54_36p	-1	validated	silent	c.2526	p.C842	0.04	"HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like"	-	no_errors
SPTBN5	51332	broad.mit.edu	36	15	39965754	39965754	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	39965754	39965754	C	G	SNP	SPTBN5	NM_016642	human	genbank	54_36p	-1	validated	missense	c.991	p.A331P	0.7	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like"	-	no_errors
EHD4	30844	broad.mit.edu	36	15	39980247	39980247	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	39980247	39980247	G	A	SNP	EHD4	NM_139265	human	genbank	54_36p	-1	provisional	missense	c.1514	p.A505V	1	"superfamily_SSF47473,HMMSmart_EH"	"superfamily_SSF52540,HMMPfam_Dynamin_N,superfamily_SSF47473,HMMSmart_EH,PatternScan_EF_HAND_1"	-	no_errors
PLA2G4F	255189	broad.mit.edu	36	15	40229338	40229338	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	40229338	40229338	G	T	SNP	PLA2G4F	NM_213600	human	genbank	54_36p	-1	provisional	missense	c.924	p.S308R	0.95	HMMSmart_SM00022	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B"	-	no_errors
PLA2G4F	255189	broad.mit.edu	36	15	40229594	40229594	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	40229594	40229594	C	G	SNP	PLA2G4F	NM_213600	human	genbank	54_36p	-1	provisional	missense	c.923	p.S308T	1	HMMSmart_SM00022	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FabD/lysophospholipase-like"	-	no_errors
PLA2G4F	255189	broad.mit.edu	36	15	40230176	40230176	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	15	40230176	40230176	G	C	SNP	PLA2G4F	NM_213600	human	genbank	54_36p	-1	provisional	silent	c.693	p.P231	0	NULL	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FabD/lysophospholipase-like"	-	no_errors
VPS39	23339	broad.mit.edu	36	15	40267316	40267316	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	40267316	40267316	T	C	SNP	VPS39	NM_015289	human	genbank	54_36p	-1	reviewed	missense	c.373	p.M125V	1	HMMPfam_CNH	"HMMPfam_CNH,HMMPfam_Vps39_1,HMMPfam_Vps39_2"	-	no_errors
ZFP106	64397	broad.mit.edu	36	15	40531348	40531348	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	40531348	40531348	C	A	SNP	ZFP106	NM_022473	human	genbank	54_36p	-1	provisional	missense	c.345	p.E115D	0.97	NULL	"PatternScan_WD_REPEATS_1,HMMSmart_ZnF_C2H2,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMSmart_PQQ,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CDAN1	146059	broad.mit.edu	36	15	40805047	40805047	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	40805047	40805047	G	A	SNP	CDAN1	NM_138477	human	genbank	54_36p	-1	validated	missense	c.3382	p.P1128S	1	NULL	NULL	-	no_errors
TTBK2	146057	broad.mit.edu	36	15	40831560	40831560	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	40831560	40831560	C	T	SNP	TTBK2	NM_173500	human	genbank	54_36p	-1	validated	nonsense	c.3176	p.W1059*	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
TTBK2	146057	broad.mit.edu	36	15	40832482	40832482	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	40832482	40832482	G	C	SNP	TTBK2	NM_173500	human	genbank	54_36p	-1	validated	missense	c.2254	p.Q752E	0.46	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CCNDBP1	23582	broad.mit.edu	36	15	41265350	41265350	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41265350	41265350	G	A	SNP	CCNDBP1	NM_012142	human	genbank	54_36p	1	reviewed	silent	c.150	p.E50	0.27	NULL	NULL	-	no_errors
EPB42	2038	broad.mit.edu	36	15	41286022	41286022	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41286022	41286022	G	C	SNP	EPB42	NM_000119	human	genbank	54_36p	-1	reviewed	silent	c.1506	p.A502	0	NULL	"superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C"	-	no_errors
EPB42	2038	broad.mit.edu	36	15	41287794	41287794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41287794	41287794	A	T	SNP	EPB42	NM_000119	human	genbank	54_36p	-1	reviewed	missense	c.1091	p.M364K	1	"HMMPfam_Transglut_core,HMMSmart_TGc,superfamily_SSF54001"	"HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001"	-	no_errors
TGM7	116179	broad.mit.edu	36	15	41358697	41358697	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41358697	41358697	G	A	SNP	TGM7	NM_052955	human	genbank	54_36p	-1	validated	silent	c.1749	p.R583	0.98	"superfamily_Transglut_C,HMMPfam_Transglut_C"	"superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglut_C,HMMPfam_Transglut_C"	-	no_errors
TGM7	116179	broad.mit.edu	36	15	41367123	41367123	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41367123	41367123	G	A	SNP	TGM7	NM_052955	human	genbank	54_36p	-1	validated	silent	c.595	p.L199	0.96	superfamily_SSF54001	"HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001"	-	no_errors
TP53BP1	7158	broad.mit.edu	36	15	41511874	41511874	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41511874	41511874	A	C	SNP	TP53BP1	NM_005657	human	genbank	54_36p	-1	validated	missense	c.3470	p.M1157R	0.26	NULL	"HMMPfam_53-BP1_Tudor,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_BRCT"	-	no_errors
TP53BP1	7158	broad.mit.edu	36	15	41555128	41555133	+	In_Frame_Del	DEL	AAGCCA	-	AAGCCA	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	AAGCCA	AAGCCA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	41555128	41555133	AAGCCA	-	DEL	TP53BP1	NM_005657	human	genbank	54_36p	-1	validated	in_frame_del	c.997_992	p.LA331in_frame_del	0.999:0.988:0.992:0.995:0.998:0.998	NULL	"HMMPfam_53-BP1_Tudor,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00292,superfamily_BRCT domain,HMMPfam_BRCT"	"(deletion:cds_exon[41555055,41555184])"	no_errors
MAP1A	4130	broad.mit.edu	36	15	41601496	41601496	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	41601496	41601496	G	A	SNP	MAP1A	NM_002373	human	genbank	54_36p	1	reviewed	missense	c.533	p.R178H	1	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAP1A	4130	broad.mit.edu	36	15	41604119	41604119	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	41604119	41604119	G	T	SNP	MAP1A	NM_002373	human	genbank	54_36p	1	reviewed	silent	c.3156	p.G1052	0	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAP1A	4130	broad.mit.edu	36	15	41605892	41605892	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41605892	41605892	G	A	SNP	MAP1A	NM_002373	human	genbank	54_36p	1	reviewed	silent	c.4929	p.G1643	0.03	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAP1A	4130	broad.mit.edu	36	15	41606018	41606018	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41606018	41606018	C	A	SNP	MAP1A	NM_002373	human	genbank	54_36p	1	reviewed	silent	c.5055	p.G1685	0.49	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
CATSPER2	117155	broad.mit.edu	36	15	41727460	41727460	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41727460	41727460	T	A	SNP	CATSPER2	NM_172095	human	genbank	54_36p	-1	reviewed	missense	c.92	p.H31L	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
PDIA3	2923	broad.mit.edu	36	15	41826085	41826085	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	41826085	41826085	C	T	SNP	PDIA3	NM_005313	human	genbank	54_36p	1	reviewed	missense	c.56	p.A19V	1	superfamily_Thioredoxin-like	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1"	-	no_errors
C15orf63	25764	broad.mit.edu	36	15	41880188	41880188	+	Silent	SNP	C	C	A	rs34257400	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	41880188	41880188	C	A	SNP	HYPK	NM_016400	human	genbank	54_36p	1	provisional	silent	c.100	p.R34	0.99	NULL	NULL	-	no_errors
WDR76	79968	broad.mit.edu	36	15	41907809	41907809	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	41907809	41907809	G	A	SNP	WDR76	NM_024908	human	genbank	54_36p	1	provisional	missense	c.415	p.E139K	0.67	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
FRMD5	84978	broad.mit.edu	36	15	41953561	41953561	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	41953561	41953561	C	T	SNP	FRMD5	NM_032892	human	genbank	54_36p	-1	validated	missense	c.1527	p.M509I	1	NULL	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA"	-	no_errors
CASC4	113201	broad.mit.edu	36	15	42460296	42460296	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	42460296	42460296	A	G	SNP	CASC4	NM_138423	human	genbank	54_36p	1	reviewed	missense	c.902	p.D301G	0.21	NULL	NULL	-	no_errors
SPG11	80208	broad.mit.edu	36	15	42708804	42708804	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	42708804	42708804	T	G	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	missense	c.1810	p.K604Q	1	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
SPG11	80208	broad.mit.edu	36	15	42740010	42740010	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	42740010	42740010	A	G	SNP	SPG11	NM_025137	human	genbank	54_36p	-1	reviewed	silent	c.354	p.F118	0.99	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
B2M	567	broad.mit.edu	36	15	42791037	42791037	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	42791037	42791037	A	G	SNP	B2M	NM_004048	human	genbank	54_36p	1	validated	missense	c.1	p.M1V	0.06	NULL	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
DUOX2	50506	broad.mit.edu	36	15	43175366	43175366	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	43175366	43175366	C	A	SNP	DUOX2	NM_014080	human	genbank	54_36p	-1	reviewed	missense	c.4032	p.R1344S	1	"superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8"	###############################################################################################################################################################################################################################################################	-	no_errors
DUOX1	53905	broad.mit.edu	36	15	43230189	43230189	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	43230189	43230189	C	T	SNP	DUOX1	NM_017434	human	genbank	54_36p	1	reviewed	silent	c.2886	p.I962	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
DUOX1	53905	broad.mit.edu	36	15	43231933	43231933	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	43231933	43231933	C	G	SNP	DUOX1	NM_017434	human	genbank	54_36p	1	reviewed	silent	c.3351	p.L1117	1	HMMPfam_Ferric_reduct	###############################################################################################################################################################################################################################################################	-	no_errors
DUOX1	53905	broad.mit.edu	36	15	43235335	43235335	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	43235335	43235335	T	A	SNP	DUOX1	NM_017434	human	genbank	54_36p	1	reviewed	nonsense	c.3618	p.Y1206*	0.97	HMMPfam_Ferric_reduct	###############################################################################################################################################################################################################################################################	-	no_errors
SLC28A2	9153	broad.mit.edu	36	15	43345143	43345143	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	43345143	43345143	T	C	SNP	SLC28A2	NM_004212	human	genbank	54_36p	1	provisional	missense	c.851	p.V284A	0.71	HMMPfam_Gate	"HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C"	-	no_errors
SPATA5L1	79029	broad.mit.edu	36	15	43500544	43500544	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	43500544	43500544	G	T	SNP	SPATA5L1	NM_024063	human	genbank	54_36p	1	provisional	silent	c.2106	p.L702	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
FBN1	2200	broad.mit.edu	36	15	46495237	46495237	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	46495237	46495237	G	A	SNP	FBN1	NM_000138	human	genbank	54_36p	-1	reviewed	silent	c.7839	p.S2613	0.76	"superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181"	###############################################################################################################################################################################################################################################################	-	no_errors
FBN1	2200	broad.mit.edu	36	15	46605669	46605669	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	46605669	46605669	C	G	SNP	FBN1	NM_000138	human	genbank	54_36p	-1	reviewed	missense	c.938	p.C313S	1	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
SHC4	399694	broad.mit.edu	36	15	46922940	46922940	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	46922940	46922940	G	A	SNP	SHC4	NM_203349	human	genbank	54_36p	-1	validated	nonsense	c.1441	p.Q481*	0.04	NULL	"superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
SHC4	399694	broad.mit.edu	36	15	46947314	46947314	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	46947314	46947314	A	G	SNP	SHC4	NM_203349	human	genbank	54_36p	-1	validated	silent	c.939	p.N313	1	"HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like"	"HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like,superfamily_SH2 domain"	-	no_errors
HDC	3067	broad.mit.edu	36	15	48331931	48331931	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	48331931	48331931	G	A	SNP	HDC	NM_002112	human	genbank	54_36p	-1	validated	silent	c.1029	p.A343	1	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Pyridoxal_deC"	"superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC"	-	no_errors
USP8	9101	broad.mit.edu	36	15	48544572	48544572	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	15	48544572	48544572	C	T	SNP	USP8	NM_005154	human	genbank	54_36p	1	validated	missense	c.578	p.T193M	1	"superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD"	"HMMPfam_DUF1873,superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
TRPM7	54822	broad.mit.edu	36	15	48671444	48671444	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	15	48671444	48671444	G	C	SNP	TRPM7	NM_017672	human	genbank	54_36p	-1	validated	missense	c.4280	p.S1427C	0.34	NULL	"HMMPfam_Ion_trans,superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase"	-	no_errors
TRPM7	54822	broad.mit.edu	36	15	48689099	48689099	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	15	48689099	48689099	C	A	SNP	TRPM7	NM_017672	human	genbank	54_36p	-1	validated	missense	c.2551	p.A851S	1	NULL	"HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,HMMPfam_Ion_trans,superfamily_Kinase_like"	-	no_errors
GLDN	342035	broad.mit.edu	36	15	49483974	49483974	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	49483974	49483974	G	A	SNP	GLDN	NM_181789	human	genbank	54_36p	1	validated	missense	c.1387	p.V463I	1	"HMMPfam_OLF,HMMSmart_SM00284"	"HMMPfam_Collagen,HMMPfam_OLF,HMMSmart_SM00284"	-	no_errors
DMXL2	23312	broad.mit.edu	36	15	49560649	49560649	+	Missense_Mutation	SNP	G	G	T	rs3751584	"by-cluster,by-frequency,by-hapmap"	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	49560649	49560649	G	T	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.5946	p.H1982Q	0.98	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
DMXL2	23312	broad.mit.edu	36	15	49616223	49616223	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	49616223	49616223	C	G	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.1746	p.E582D	0	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
DMXL2	23312	broad.mit.edu	36	15	49616266	49616266	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	49616266	49616266	A	C	SNP	DMXL2	NM_015263	human	genbank	54_36p	-1	validated	missense	c.1703	p.I568R	0.24	superfamily_WD40 repeat-like	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
TMOD2	29767	broad.mit.edu	36	15	49877791	49877791	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	15	49877791	49877791	G	-	DEL	TMOD2	NM_014548	human	genbank	54_36p	1	reviewed	frame_shift_del	c.838	p.E280fs	1	"HMMPfam_Tropomodulin,superfamily_SSF52047"	"HMMPfam_Tropomodulin,superfamily_SSF52047"	"(deletion:cds_exon[49877686,49877829])"	no_errors
TMOD3	29766	broad.mit.edu	36	15	49968619	49968619	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	49968619	49968619	C	G	SNP	TMOD3	NM_014547	human	genbank	54_36p	1	provisional	missense	c.481	p.Q161E	0.98	HMMPfam_Tropomodulin	"HMMPfam_Tropomodulin,superfamily_SSF52047"	-	no_errors
MAPK6	5597	broad.mit.edu	36	15	50143789	50143789	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	50143789	50143789	A	C	SNP	MAPK6	NM_002748	human	genbank	54_36p	1	reviewed	missense	c.1466	p.K489T	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MYO5C	55930	broad.mit.edu	36	15	50304578	50304578	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	50304578	50304578	T	G	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.3351	p.E1117D	1	NULL	"superfamily_Myosin S1 fragment N-terminal domain,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL"	-	no_errors
MYO5C	55930	broad.mit.edu	36	15	50324876	50324876	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	50324876	50324876	C	A	SNP	MYO5C	NM_018728	human	genbank	54_36p	-1	validated	missense	c.2145	p.E715D	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO5A	4644	broad.mit.edu	36	15	50476768	50476768	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	50476768	50476768	C	G	SNP	MYO5A	NM_000259	human	genbank	54_36p	-1	reviewed	missense	c.1241	p.W414S	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
UNC13C	440279	broad.mit.edu	36	15	52094181	52094181	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	52094181	52094181	C	A	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.1789	p.L597M	0.97	NULL	"superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD"	-	no_errors
UNC13C	440279	broad.mit.edu	36	15	52626254	52626254	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	52626254	52626254	G	C	SNP	UNC13C	NM_001080534	human	genbank	54_36p	1	provisional	missense	c.5739	p.K1913N	1	HMMPfam_Membr_traf_MHD	"HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889"	-	no_errors
RSL24D1	51187	broad.mit.edu	36	15	53262833	53262833	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	53262833	53262833	G	A	SNP	RSL24D1	NM_016304	human	genbank	54_36p	-1	reviewed	silent	c.390	p.N130	1	NULL	"HMMPfam_Ribosomal_L24e,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00746,PatternScan_RIBOSOMAL_L24E"	-	no_errors
PIGB	9488	broad.mit.edu	36	15	53420190	53420191	+	Nonsense_Mutation	DNP	TC	TC	GA	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	53420190	53420191	TC	GA	DNP	PIGB	NM_004855	human	genbank	54_36p	1	reviewed	nonsense	c.935_936	p.FS312*	1.000:1.000	HMMPfam_Glyco_transf_22	HMMPfam_Glyco_transf_22	-	no_errors
NEDD4	4734	broad.mit.edu	36	15	53995840	53995840	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	15	53995840	53995840	G	T	SNP	NEDD4	NM_198400	human	genbank	54_36p	-1	validated	missense	c.482	p.S161Y	1	NULL	"superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT"	-	no_errors
CGNL1	84952	broad.mit.edu	36	15	55517809	55517809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	55517809	55517809	C	T	SNP	CGNL1	NM_032866	human	genbank	54_36p	1	validated	missense	c.320	p.P107L	0.2	NULL	HMMPfam_Myosin_tail_1	-	no_errors
CGNL1	84952	broad.mit.edu	36	15	55518324	55518324	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	55518324	55518324	C	T	SNP	CGNL1	NM_032866	human	genbank	54_36p	1	validated	missense	c.835	p.R279W	1	NULL	HMMPfam_Myosin_tail_1	-	no_errors
CGNL1	84952	broad.mit.edu	36	15	55597894	55597894	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	55597894	55597894	A	T	SNP	CGNL1	NM_032866	human	genbank	54_36p	1	validated	silent	c.2622	p.R874	0.48	NULL	HMMPfam_Myosin_tail_1	-	no_errors
GCOM1	145781	broad.mit.edu	36	15	55697672	55697672	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	55697672	55697672	C	G	SNP	GCOM1	NM_001018090	human	genbank	54_36p	1	reviewed	missense	c.312	p.I104M	1	NULL	NULL	-	no_errors
AQP9	366	broad.mit.edu	36	15	56252647	56252647	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	56252647	56252647	G	C	SNP	AQP9	NM_020980	human	genbank	54_36p	1	reviewed	missense	c.327	p.Q109H	1	"HMMPfam_MIP,superfamily_Aquaporin-like"	"HMMPfam_MIP,superfamily_Aquaporin-like,PatternScan_MIP"	-	no_errors
ADAM10	102	broad.mit.edu	36	15	56720384	56720384	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	56720384	56720384	T	A	SNP	ADAM10	NM_001110	human	genbank	54_36p	-1	reviewed	missense	c.896	p.K299M	1	"superfamily_SSF55486,HMMPfam_Reprolysin"	"PatternScan_CYSTEINE_SWITCH,PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_DISIN,superfamily_Disintegrin"	-	no_errors
FAM63B	54629	broad.mit.edu	36	15	56851602	56851602	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	56851602	56851602	G	A	SNP	FAM63B	NM_001040450	human	genbank	54_36p	1	validated	missense	c.716	p.G239E	1	NULL	"PatternScan_ATPASE_ALPHA_BETA,HMMPfam_DUF544"	-	no_errors
RNF111	54778	broad.mit.edu	36	15	57170618	57170618	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	57170618	57170618	A	T	SNP	RNF111	NM_017610	human	genbank	54_36p	1	reviewed	missense	c.2712	p.R904S	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
LDHAL6B	92483	broad.mit.edu	36	15	57287097	57287097	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	15	57287097	57287097	G	C	SNP	LDHAL6B	NM_033195	human	genbank	54_36p	1	provisional	missense	c.666	p.L222F	1	"superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C"	"superfamily_NAD(P)-bd,HMMPfam_Ldh_1_N,superfamily_Lactate_DH/Glyco_hydro_4_C,HMMPfam_Ldh_1_C,PatternScan_L_LDH"	-	no_errors
FOXB1	27023	broad.mit.edu	36	15	58084726	58084726	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	58084726	58084726	C	G	SNP	FOXB1	NM_012182	human	genbank	54_36p	1	validated	missense	c.272	p.P91R	1	"HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head"	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
FOXB1	27023	broad.mit.edu	36	15	58084968	58084968	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	58084968	58084968	A	T	SNP	FOXB1	NM_012182	human	genbank	54_36p	1	validated	missense	c.514	p.I172F	1	NULL	"HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_SSF46785"	-	no_errors
NARG2	79664	broad.mit.edu	36	15	58521964	58521964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	58521964	58521964	C	T	SNP	NARG2	NM_024611	human	genbank	54_36p	-1	validated	missense	c.2368	p.E790K	1	HMMPfam_NARG2_C	HMMPfam_NARG2_C	-	no_errors
RORA	6095	broad.mit.edu	36	15	58611317	58611317	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	58611317	58611317	C	G	SNP	RORA	NM_134260	human	genbank	54_36p	-1	reviewed	missense	c.321	p.K107N	1	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1"	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
RORA	6095	broad.mit.edu	36	15	58706824	58706824	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	58706824	58706824	C	A	SNP	RORA	NM_134260	human	genbank	54_36p	-1	reviewed	missense	c.42	p.E14D	0.49	NULL	"HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
VPS13C	54832	broad.mit.edu	36	15	59954389	59954389	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	59954389	59954389	T	A	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	missense	c.10392	p.R3464S	1	NULL	HMMPfam_DUF1162	-	no_errors
VPS13C	54832	broad.mit.edu	36	15	59986810	59986810	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	59986810	59986810	G	T	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	missense	c.9050	p.T3017N	0.7	HMMPfam_DUF1162	HMMPfam_DUF1162	-	no_errors
VPS13C	54832	broad.mit.edu	36	15	59988545	59988545	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	59988545	59988545	C	T	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	silent	c.8916	p.E2972	1	HMMPfam_DUF1162	HMMPfam_DUF1162	-	no_errors
TLN2	83660	broad.mit.edu	36	15	60841913	60841913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	60841913	60841913	G	A	SNP	TLN2	NM_015059	human	genbank	54_36p	1	reviewed	missense	c.4930	p.D1644N	1	NULL	"PatternScan_FERM_1,HMMSmart_B41,HMMPfam_FERM_N,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ"	-	no_errors
TLN2	83660	broad.mit.edu	36	15	60899796	60899796	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	60899796	60899796	G	A	SNP	TLN2	NM_015059	human	genbank	54_36p	1	reviewed	silent	c.6936	p.G2312	1	superfamily_SSF109885	"HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729"	-	no_errors
TLN2	83660	broad.mit.edu	36	15	60912774	60912774	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	60912774	60912774	G	A	SNP	TLN2	NM_015059	human	genbank	54_36p	1	reviewed	missense	c.7021	p.D2341N	1	"HMMSmart_ILWEQ,superfamily_SSF109885"	"HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729"	-	no_errors
CA12	771	broad.mit.edu	36	15	61421330	61421330	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	61421330	61421330	T	G	SNP	CA12	NM_001218	human	genbank	54_36p	-1	reviewed	missense	c.449	p.N150T	1	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
HERC1	8925	broad.mit.edu	36	15	61737916	61737942	+	In_Frame_Del	DEL	TGCTCTCCTAACGTTATTCTCCCAGAG	-	TGCTCTCCTAACGTTATTCTCCCAGAG	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	TGCTCTCCTAACGTTATTCTCCCAGAG	TGCTCTCCTAACGTTATTCTCCCAGAG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	15	61737916	61737942	TGCTCTCCTAACGTTATTCTCCCAGAG	-	DEL	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	in_frame_del	c.9479_9453	p.SGRITLGEQ3152in_frame_del	1.000:1.000:0.998:1.000:1.000:0.994:1.000:0.996:0.381:0.402:0.098:0.010:0.997:1.000:1.000:1.000:1.000:0.999:1.000:0.995:0.985:1.000:1.000:0.986:1.000:1.000:0.997	NULL	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[61737796,61737970])"	no_errors
HERC1	8925	broad.mit.edu	36	15	61745371	61745371	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	61745371	61745371	G	A	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	silent	c.8355	p.I2785	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
HERC1	8925	broad.mit.edu	36	15	61792814	61792814	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	61792814	61792814	A	G	SNP	HERC1	NM_003922	human	genbank	54_36p	-1	reviewed	silent	c.4254	p.P1418	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MTFMT	123263	broad.mit.edu	36	15	63082647	63082647	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	63082647	63082647	C	A	SNP	MTFMT	NM_139242	human	genbank	54_36p	-1	validated	missense	c.721	p.D241Y	1	"HMMPfam_Formyl_trans_C,superfamily_FMT C-terminal domain-like"	"HMMPfam_Formyl_trans_N,superfamily_Formyltransferase,HMMPfam_Formyl_trans_C,superfamily_FMT C-terminal domain-like"	-	no_errors
MTFMT	123263	broad.mit.edu	36	15	63101003	63101003	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	63101003	63101003	C	T	SNP	MTFMT	NM_139242	human	genbank	54_36p	-1	validated	missense	c.292	p.D98N	1	"HMMPfam_Formyl_trans_N,superfamily_Formyltransferase"	"HMMPfam_Formyl_trans_N,superfamily_Formyltransferase,HMMPfam_Formyl_trans_C,superfamily_FMT C-terminal domain-like"	-	no_errors
RASL12	51285	broad.mit.edu	36	15	63138788	63138789	+	Missense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	63138788	63138789	TC	AA	DNP	RASL12	NM_016563	human	genbank	54_36p	-1	validated	missense	c.182_181	p.E61L	1.000:1.000	"superfamily_SSF52540,HMMPfam_Ras"	"superfamily_SSF52540,HMMPfam_Ras"	-	no_errors
CILP	8483	broad.mit.edu	36	15	63286379	63286379	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	63286379	63286379	C	T	SNP	CILP	NM_003613	human	genbank	54_36p	-1	reviewed	missense	c.218	p.R73Q	1	NULL	"PatternScan_HEXAPEP_TRANSFERASES,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Carboxypeptidase regulatory domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
IGDCC3	9543	broad.mit.edu	36	15	63408533	63408533	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	63408533	63408533	G	T	SNP	IGDCC3	NM_004884	human	genbank	54_36p	-1	validated	missense	c.2212	p.P738T	0.02	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
IGDCC3	9543	broad.mit.edu	36	15	63411349	63411349	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	63411349	63411349	C	T	SNP	IGDCC3	NM_004884	human	genbank	54_36p	-1	validated	silent	c.1131	p.R377	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
IGDCC3	9543	broad.mit.edu	36	15	63411438	63411438	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	63411438	63411438	T	A	SNP	IGDCC3	NM_004884	human	genbank	54_36p	-1	validated	missense	c.1042	p.M348L	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
IGDCC4	57722	broad.mit.edu	36	15	63489665	63489665	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	63489665	63489665	T	A	SNP	IGDCC4	NM_020962	human	genbank	54_36p	-1	provisional	missense	c.467	p.E156V	0.44	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
DPP8	54878	broad.mit.edu	36	15	63586648	63586648	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	63586648	63586648	A	G	SNP	DPP8	NM_197960	human	genbank	54_36p	-1	reviewed	silent	c.406	p.L136	0.99	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain	"superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9"	-	no_errors
DENND4A	10260	broad.mit.edu	36	15	63831868	63831868	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	63831868	63831868	G	A	SNP	DENND4A	NM_005848	human	genbank	54_36p	-1	validated	missense	c.464	p.T155M	0.69	NULL	"HMMSmart_uDENN,HMMPfam_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_PPR"	-	no_errors
DIS3L	115752	broad.mit.edu	36	15	64412395	64412395	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	64412395	64412395	G	C	SNP	DIS3L	NM_133375	human	genbank	54_36p	1	validated	splice_site	c.2608-1	e16-1	1	-	-	-	no_errors
TIPIN	54962	broad.mit.edu	36	15	64428797	64428797	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	64428797	64428797	C	G	SNP	TIPIN	NM_017858	human	genbank	54_36p	-1	validated	missense	c.321	p.M107I	1	HMMPfam_Swi3	HMMPfam_Swi3	-	no_errors
ZWILCH	55055	broad.mit.edu	36	15	64603096	64603096	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	64603096	64603096	A	G	SNP	ZWILCH	NM_017975	human	genbank	54_36p	1	validated	missense	c.775	p.R259G	0.99	HMMPfam_DUF2352	HMMPfam_DUF2352	-	no_errors
LCTL	197021	broad.mit.edu	36	15	64637123	64637123	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	64637123	64637123	C	T	SNP	LCTL	NM_207338	human	genbank	54_36p	-1	validated	missense	c.913	p.D305N	1	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat"	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1"	-	no_errors
LCTL	197021	broad.mit.edu	36	15	64637179	64637179	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	64637179	64637179	C	G	SNP	LCTL	NM_207338	human	genbank	54_36p	-1	validated	missense	c.857	p.C286S	0.95	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat"	"HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2"	-	no_errors
IQCH	64799	broad.mit.edu	36	15	65573686	65573686	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	65573686	65573686	C	T	SNP	IQCH	NM_022784	human	genbank	54_36p	1	provisional	missense	c.1819	p.L607F	1	NULL	HMMPfam_IQ	-	no_errors
CORO2B	10391	broad.mit.edu	36	15	66798128	66798128	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	66798128	66798128	C	G	SNP	CORO2B	NM_006091	human	genbank	54_36p	1	validated	missense	c.1005	p.C335W	1	"superfamily_WD40 repeat-like,HMMPfam_DUF1900"	"HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900"	-	no_errors
PAQR5	54852	broad.mit.edu	36	15	67483134	67483134	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	67483134	67483134	C	G	SNP	PAQR5	NM_001104554	human	genbank	54_36p	1	validated	missense	c.912	p.I304M	0.9	NULL	HMMPfam_HlyIII	-	no_errors
RPLP1	6176	broad.mit.edu	36	15	67532363	67532363	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	67532363	67532363	G	A	SNP	RPLP1	NM_001003	human	genbank	54_36p	1	reviewed	missense	c.22	p.A8T	1	NULL	HMMPfam_Ribosomal_60s	-	no_errors
UACA	55075	broad.mit.edu	36	15	68747021	68747021	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	68747021	68747021	C	G	SNP	UACA	NM_018003	human	genbank	54_36p	-1	validated	missense	c.3056	p.S1019T	0.01	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_Pox_A_type_inc"	-	no_errors
LRRC49	54839	broad.mit.edu	36	15	69089386	69089386	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	69089386	69089386	G	A	SNP	LRRC49	NM_017691	human	genbank	54_36p	1	validated	splice_site	c.1593+1	e13+1	1	-	-	-	no_errors
THSD4	79875	broad.mit.edu	36	15	69844505	69844505	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	69844505	69844505	A	T	SNP	THSD4	NM_024817	human	genbank	54_36p	1	provisional	missense	c.2682	p.E894D	1	"HMMPfam_TSP_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_ADAM_spacer1,HMMPfam_TSP_1,HMMPfam_PLAC"	-	no_errors
CELF6	60677	broad.mit.edu	36	15	70367937	70367937	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	70367937	70367937	T	G	SNP	BRUNOL6	NM_052840	human	genbank	54_36p	-1	reviewed	missense	c.1170	p.R390S	1	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
HEXA	3073	broad.mit.edu	36	15	70430550	70430550	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	70430550	70430550	G	C	SNP	HEXA	NM_000520	human	genbank	54_36p	-1	reviewed	missense	c.650	p.T217S	0.65	"HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	"superfamily_beta-N-acetylhexosaminidase-like domain,HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases"	-	no_errors
ARIH1	25820	broad.mit.edu	36	15	70634759	70634759	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	70634759	70634759	G	A	SNP	ARIH1	NM_005744	human	genbank	54_36p	1	validated	splice_site	c.681+1	e4+1	1	-	-	-	no_errors
HCN4	10021	broad.mit.edu	36	15	71403146	71403146	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	71403146	71403146	G	C	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.2341	p.P781A	1	NULL	"PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1"	-	no_errors
HCN4	10021	broad.mit.edu	36	15	71404475	71404475	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	71404475	71404475	G	T	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.1852	p.P618T	1	"HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding"	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324"	-	no_errors
HCN4	10021	broad.mit.edu	36	15	71422832	71422832	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	71422832	71422832	A	T	SNP	HCN4	NM_005477	human	genbank	54_36p	-1	reviewed	missense	c.1156	p.L386I	1	"HMMPfam_Ion_trans,superfamily_SSF81324"	"HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324"	-	no_errors
CD276	80381	broad.mit.edu	36	15	71782444	71782444	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	71782444	71782444	A	G	SNP	CD276	NM_001024736	human	genbank	54_36p	1	validated	missense	c.697	p.S233G	0.97	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMSmart_SM00407"	-	no_errors
TBC1D21	161514	broad.mit.edu	36	15	71967843	71967843	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	71967843	71967843	A	T	SNP	TBC1D21	NM_153356	human	genbank	54_36p	1	provisional	missense	c.914	p.D305V	1	superfamily_RabGAP_TBC	"superfamily_RabGAP_TBC,HMMSmart_TBC"	-	no_errors
STOML1	9399	broad.mit.edu	36	15	72063456	72063456	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	72063456	72063456	C	G	SNP	STOML1	NM_004809	human	genbank	54_36p	-1	provisional	missense	c.1072	p.D358H	0.99	"superfamily_Sterol carrier protein SCP,HMMPfam_SCP2"	"HMMSmart_SM00244,HMMPfam_Band_7,superfamily_Sterol carrier protein SCP,HMMPfam_SCP2"	-	no_errors
ISLR2	57611	broad.mit.edu	36	15	72213827	72213827	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	72213827	72213827	C	G	SNP	ISLR2	NM_020851	human	genbank	54_36p	1	validated	missense	c.1679	p.P560R	1	NULL	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG"	-	no_errors
EDC3	80153	broad.mit.edu	36	15	72751170	72751170	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	72751170	72751170	T	C	SNP	EDC3	NM_025083	human	genbank	54_36p	-1	validated	splice_site	c.165-2	e2-2	1	-	-	-	no_errors
CYP1A1	1543	broad.mit.edu	36	15	72802408	72802409	+	Missense_Mutation	DNP	GG	GG	CC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	72802408	72802409	GG	CC	DNP	CYP1A1	NM_000499	human	genbank	54_36p	-1	reviewed	missense	c.84_83	p.A28G	0.000:0.000	NULL	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CSK	1445	broad.mit.edu	36	15	72881724	72881724	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	72881724	72881724	G	T	SNP	CSK	NM_004383	human	genbank	54_36p	1	validated	splice_site	c.1171-1	e12-1	1	-	-	-	no_errors
SIN3A	25942	broad.mit.edu	36	15	73480188	73480188	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	73480188	73480188	T	C	SNP	SIN3A	NM_015477	human	genbank	54_36p	-1	reviewed	missense	c.1673	p.Y558C	1	"HMMPfam_HDAC_interact,HMMSmart_HDAC_interact"	"superfamily_PAH,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_HDAC_interact"	-	no_errors
SIN3A	25942	broad.mit.edu	36	15	73502113	73502113	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	73502113	73502113	C	G	SNP	SIN3A	NM_015477	human	genbank	54_36p	-1	reviewed	silent	c.294	p.V98	1	NULL	"HMMPfam_PAH,superfamily_PAH,HMMPfam_HDAC_interact,HMMSmart_HDAC_interact"	-	no_errors
CSPG4	1464	broad.mit.edu	36	15	73766872	73766872	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	73766872	73766872	C	T	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	missense	c.3589	p.V1197I	0	NULL	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA"	-	no_errors
UBE2Q2	92912	broad.mit.edu	36	15	73952823	73952823	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	73952823	73952823	G	T	SNP	UBE2Q2	NM_173469	human	genbank	54_36p	1	validated	splice_site	c.448-1	e5-1	1	-	-	-	no_errors
UBE2Q2	92912	broad.mit.edu	36	15	73978838	73978838	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	73978838	73978838	C	G	SNP	UBE2Q2	NM_173469	human	genbank	54_36p	1	validated	missense	c.1112	p.P371R	1	NULL	"superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con"	-	no_errors
ISL2	64843	broad.mit.edu	36	15	74417365	74417365	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	74417365	74417365	T	C	SNP	ISL2	NM_145805	human	genbank	54_36p	1	provisional	splice_site	c.248+2	e2+2	1	-	-	-	no_errors
SCAPER	49855	broad.mit.edu	36	15	74455688	74455688	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	74455688	74455688	C	G	SNP	SCAPER	NM_020843	human	genbank	54_36p	-1	validated	missense	c.3722	p.G1241A	1	NULL	"HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SCAPER	49855	broad.mit.edu	36	15	74884026	74884026	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	74884026	74884026	C	T	SNP	SCAPER	NM_020843	human	genbank	54_36p	-1	validated	missense	c.394	p.V132M	1	NULL	"HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PSTPIP1	9051	broad.mit.edu	36	15	75116508	75116509	+	Frame_Shift_Ins	INS	-	AAGT	AAGT	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	75116508	75116509	-	AAGT	INS	PSTPIP1	NM_003978	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1187_1188	p.W396fs	1.000:1.000	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_Prismane protein-like,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
SGK269	79834	broad.mit.edu	36	15	75259106	75259106	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	75259106	75259106	C	T	SNP	SGK269	NM_024776	human	genbank	54_36p	-1	validated	missense	c.2218	p.E740K	0.91	NULL	"PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TBC1D2B	23102	broad.mit.edu	36	15	76077690	76077690	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	76077690	76077690	C	T	SNP	TBC1D2B	NM_015079	human	genbank	54_36p	-1	validated	missense	c.2329	p.D777N	1	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
ACSBG1	23205	broad.mit.edu	36	15	76258093	76258093	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	76258093	76258093	G	A	SNP	ACSBG1	NM_015162	human	genbank	54_36p	-1	reviewed	silent	c.1620	p.I540	0.8	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
DNAJA4	55466	broad.mit.edu	36	15	76344187	76344187	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	76344187	76344187	C	A	SNP	DNAJA4	NM_018602	human	genbank	54_36p	1	validated	missense	c.27	p.D9E	1	"superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ"	"superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40_DnaJ_pep,HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP_DnaJ_cys-rich,HMMPfam_DnaJ_C"	-	no_errors
PSMA4	5685	broad.mit.edu	36	15	76622003	76622003	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	76622003	76622003	A	C	SNP	PSMA4	NM_001102667	human	genbank	54_36p	1	validated	missense	c.170	p.D57A	1	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	"superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome,PatternScan_PROTEASOME_B"	-	no_errors
CHRNA5	1138	broad.mit.edu	36	15	76667716	76667716	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	76667716	76667716	G	C	SNP	CHRNA5	NM_000745	human	genbank	54_36p	1	provisional	missense	c.309	p.W103C	1	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
CHRNA3	1136	broad.mit.edu	36	15	76680771	76680771	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	76680771	76680771	G	A	SNP	CHRNA3	NM_000743	human	genbank	54_36p	-1	validated	missense	c.1268	p.S423F	1	"superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	"superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb"	-	no_errors
ADAMTS7	11173	broad.mit.edu	36	15	76854143	76854143	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	76854143	76854143	C	T	SNP	ADAMTS7	NM_014272	human	genbank	54_36p	-1	reviewed	missense	c.1754	p.R585H	0.95	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
RASGRF1	5923	broad.mit.edu	36	15	77079305	77079305	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	77079305	77079305	G	A	SNP	RASGRF1	NM_002891	human	genbank	54_36p	-1	reviewed	missense	c.2629	p.P877S	0.78	"superfamily_Ras GEF,HMMPfam_RasGEF_N"	###############################################################################################################################################################################################################################################################	-	no_errors
TMED3	23423	broad.mit.edu	36	15	77393308	77393308	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	77393308	77393308	C	A	SNP	TMED3	NM_007364	human	genbank	54_36p	1	validated	missense	c.323	p.T108N	1	"HMMPfam_EMP24_GP25L,superfamily_SSF101576"	"HMMPfam_EMP24_GP25L,superfamily_SSF101576"	-	no_errors
KIAA1024	23251	broad.mit.edu	36	15	77536964	77536964	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	77536964	77536964	G	A	SNP	KIAA1024	NM_015206	human	genbank	54_36p	1	validated	missense	c.1420	p.V474M	1	NULL	HMMPfam_UPF0258	-	no_errors
KIAA1024	23251	broad.mit.edu	36	15	77537150	77537150	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	77537150	77537150	G	T	SNP	KIAA1024	NM_015206	human	genbank	54_36p	1	validated	missense	c.1606	p.V536L	0.03	NULL	HMMPfam_UPF0258	-	no_errors
ZFAND6	54469	broad.mit.edu	36	15	78202096	78202096	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	78202096	78202096	G	C	SNP	ZFAND6	NM_019006	human	genbank	54_36p	1	provisional	splice_site	c.264-1	e3-1	1	-	-	-	no_errors
ARNT2	9915	broad.mit.edu	36	15	78587555	78587555	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	78587555	78587555	G	A	SNP	ARNT2	NM_014862	human	genbank	54_36p	1	reviewed	missense	c.626	p.R209Q	1	HMMPfam_PAS	"superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086"	-	no_errors
KIAA1199	57214	broad.mit.edu	36	15	78960497	78960497	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	78960497	78960497	C	T	SNP	KIAA1199	NM_018689	human	genbank	54_36p	1	validated	silent	c.582	p.I194	0.65	NULL	HMMPfam_G8	-	no_errors
TMC3	342125	broad.mit.edu	36	15	79437872	79437872	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	79437872	79437872	T	A	SNP	TMC3	NM_001080532	human	genbank	54_36p	-1	provisional	missense	c.526	p.S176C	0.99	NULL	HMMPfam_TMC	-	no_errors
AP3B2	8120	broad.mit.edu	36	15	81127729	81127729	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	81127729	81127729	G	A	SNP	AP3B2	NM_004644	human	genbank	54_36p	-1	validated	missense	c.2861	p.A954V	1	NULL	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
C15orf40	123207	broad.mit.edu	36	15	81471355	81471355	+	5'UTR	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	81471355	81471355	C	T	SNP	C15orf40	NM_144597	human	genbank	54_36p	-1	predicted	5_prime_untranslated_region	c.-73	NULL	0	-	-	-	no_errors
TM6SF1	53346	broad.mit.edu	36	15	81596364	81596364	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	81596364	81596364	C	T	SNP	TM6SF1	NM_023003	human	genbank	54_36p	1	validated	missense	c.1049	p.A350V	1	NULL	NULL	-	no_errors
BNC1	646	broad.mit.edu	36	15	81723796	81723796	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	81723796	81723796	C	T	SNP	BNC1	NM_001717	human	genbank	54_36p	-1	reviewed	missense	c.1211	p.R404H	1	HMMSmart_ZnF_C2H2	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
SH3GL3	6457	broad.mit.edu	36	15	82078026	82078026	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	82078026	82078026	G	A	SNP	SH3GL3	NM_003027	human	genbank	54_36p	1	validated	missense	c.1051	p.V351M	1	HMMSmart_SH3	"HMMSmart_BAR,HMMPfam_BAR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
ADAMTSL3	57188	broad.mit.edu	36	15	82383776	82383776	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	82383776	82383776	C	A	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	missense	c.2104	p.P702T	0.98	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209"	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC"	-	no_errors
ADAMTSL3	57188	broad.mit.edu	36	15	82485191	82485191	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	82485191	82485191	G	A	SNP	ADAMTSL3	NM_207517	human	genbank	54_36p	1	validated	missense	c.4655	p.R1552Q	0.98	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
NMB	4828	broad.mit.edu	36	15	82999553	82999553	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	82999553	82999553	C	T	SNP	NMB	NM_205858	human	genbank	54_36p	-1	validated	silent	c.417	p.K139	0.04	NULL	"HMMPfam_Bombesin,PatternScan_BOMBESIN"	-	no_errors
KLHL25	64410	broad.mit.edu	36	15	84113931	84113931	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	84113931	84113931	G	A	SNP	KLHL25	NM_022480	human	genbank	54_36p	-1	validated	missense	c.115	p.L39F	1	"superfamily_BTB/POZ_fold,HMMPfam_BTB"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
AGBL1	123624	broad.mit.edu	36	15	84898708	84898708	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	84898708	84898708	T	C	SNP	AGBL1	NM_152336	human	genbank	54_36p	1	validated	missense	c.2792	p.M931T	1	HMMPfam_Peptidase_M14	"superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14"	-	no_errors
AGBL1	123624	broad.mit.edu	36	15	85018599	85018599	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	85018599	85018599	G	A	SNP	AGBL1	NM_152336	human	genbank	54_36p	1	validated	missense	c.3011	p.S1004N	0.89	NULL	"HMMPfam_Peptidase_M14,superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases"	-	no_errors
NTRK3	4916	broad.mit.edu	36	15	86277384	86277384	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	86277384	86277384	A	T	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	missense	c.1752	p.D584E	1	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
NTRK3	4916	broad.mit.edu	36	15	86284908	86284908	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	86284908	86284908	C	A	SNP	NTRK3	NM_001012338	human	genbank	54_36p	-1	reviewed	nonsense	c.1666	p.E556*	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	###############################################################################################################################################################################################################################################################	-	no_errors
ACAN	176	broad.mit.edu	36	15	87218208	87218208	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	15	87218208	87218208	C	T	SNP	ACAN	NM_013227	human	genbank	54_36p	1	reviewed	missense	c.7123	p.R2375W	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	###############################################################################################################################################################################################################################################################	-	no_errors
HAPLN3	145864	broad.mit.edu	36	15	87223476	87223476	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	87223476	87223476	G	A	SNP	HAPLN3	NM_178232	human	genbank	54_36p	-1	reviewed	silent	c.522	p.N174	0	"HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1"	-	no_errors
ABHD2	11057	broad.mit.edu	36	15	87535326	87535326	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	87535326	87535326	G	T	SNP	ABHD2	NM_007011	human	genbank	54_36p	1	reviewed	missense	c.938	p.G313V	1	"superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_UPF0017"	"superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_UPF0017"	-	no_errors
FANCI	55215	broad.mit.edu	36	15	87634458	87634458	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	87634458	87634458	A	G	SNP	FANCI	NM_018193	human	genbank	54_36p	1	reviewed	missense	c.1832	p.D611G	1	NULL	NULL	-	no_errors
FANCI	55215	broad.mit.edu	36	15	87648148	87648148	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	87648148	87648148	G	A	SNP	FANCI	NM_018193	human	genbank	54_36p	1	reviewed	missense	c.2876	p.R959Q	0.07	NULL	NULL	-	no_errors
POLG	5428	broad.mit.edu	36	15	87666204	87666204	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	87666204	87666204	C	T	SNP	POLG	NM_002693	human	genbank	54_36p	-1	reviewed	missense	c.2473	p.V825M	0.99	"superfamily_SSF56672,HMMPfam_DNA_pol_A"	"superfamily_SSF56672,HMMPfam_DNA_pol_A,HMMSmart_POLAc,PatternScan_DNA_POLYMERASE_A"	-	no_errors
C15orf42	90381	broad.mit.edu	36	15	87920451	87920451	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	87920451	87920451	G	A	SNP	C15orf42	NM_152259	human	genbank	54_36p	1	validated	nonsense	c.630	p.W210*	1	NULL	NULL	-	no_errors
C15orf42	90381	broad.mit.edu	36	15	87946051	87946051	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	87946051	87946051	G	A	SNP	C15orf42	NM_152259	human	genbank	54_36p	1	validated	missense	c.2407	p.V803I	1	NULL	NULL	-	no_errors
C15orf42	90381	broad.mit.edu	36	15	87968095	87968095	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	87968095	87968095	G	A	SNP	C15orf42	NM_152259	human	genbank	54_36p	1	validated	missense	c.3550	p.E1184K	0	NULL	NULL	-	no_errors
C15orf42	90381	broad.mit.edu	36	15	87968998	87968998	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	87968998	87968998	G	C	SNP	C15orf42	NM_152259	human	genbank	54_36p	1	validated	missense	c.4453	p.V1485L	0	NULL	NULL	-	no_errors
C15orf42	90381	broad.mit.edu	36	15	87969337	87969337	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	87969337	87969337	G	T	SNP	C15orf42	NM_152259	human	genbank	54_36p	1	validated	nonsense	c.4792	p.E1598*	0.44	NULL	NULL	-	no_errors
WDR93	56964	broad.mit.edu	36	15	88077313	88077313	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	88077313	88077313	C	A	SNP	WDR93	NM_020212	human	genbank	54_36p	1	provisional	nonsense	c.1403	p.S468*	0.01	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	"superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,PatternScan_WD_REPEATS_1"	-	no_errors
ANPEP	290	broad.mit.edu	36	15	88136751	88136751	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	88136751	88136751	G	A	SNP	ANPEP	NM_001150	human	genbank	54_36p	-1	reviewed	missense	c.2296	p.P766S	0	NULL	"superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE"	-	no_errors
ANPEP	290	broad.mit.edu	36	15	88150536	88150536	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	88150536	88150536	G	A	SNP	ANPEP	NM_001150	human	genbank	54_36p	-1	reviewed	missense	c.283	p.P95S	0.29	"HMMPfam_Peptidase_M1,superfamily_SSF63737"	"PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_SSF55486,superfamily_SSF63737"	-	no_errors
AP3S2	10239	broad.mit.edu	36	15	88215757	88215757	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	88215757	88215757	C	T	SNP	AP3S2	NM_005829	human	genbank	54_36p	-1	validated	missense	c.299	p.C100Y	1	"HMMPfam_Clat_adaptor_s,superfamily_SNARE-like"	"HMMPfam_Clat_adaptor_s,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_S"	-	no_errors
C15orf38	348110	broad.mit.edu	36	15	88257022	88257022	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	88257022	88257022	C	T	SNP	C15orf38	NM_182616	human	genbank	54_36p	-1	validated	missense	c.50	p.S17N	0.5	HMMPfam_UPF0552	HMMPfam_UPF0552	-	no_errors
ZNF710	374655	broad.mit.edu	36	15	88418450	88418450	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	88418450	88418450	G	T	SNP	ZNF710	NM_198526	human	genbank	54_36p	1	provisional	missense	c.1749	p.K583N	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SEMA4B	10509	broad.mit.edu	36	15	88561767	88561767	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	88561767	88561767	G	A	SNP	SEMA4B	NM_020210	human	genbank	54_36p	1	validated	missense	c.250	p.V84M	1	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630"	"superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat"	-	no_errors
IQGAP1	8826	broad.mit.edu	36	15	88830276	88830276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	88830276	88830276	A	G	SNP	IQGAP1	NM_003870	human	genbank	54_36p	1	reviewed	missense	c.3932	p.D1311G	1	"superfamily_GTPase activation domain GAP,HMMSmart_SM00323"	###############################################################################################################################################################################################################################################################	-	no_errors
BLM	641	broad.mit.edu	36	15	89091715	89091715	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89091715	89091715	C	G	SNP	BLM	NM_000057	human	genbank	54_36p	1	reviewed	missense	c.89	p.P30R	0.66	NULL	"HMMPfam_BDHCT,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_RQC,superfamily_HRDC_like,HMMSmart_HRDC,HMMPfam_HRDC"	-	no_errors
BLM	641	broad.mit.edu	36	15	89093757	89093757	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	89093757	89093757	G	T	SNP	BLM	NM_000057	human	genbank	54_36p	1	reviewed	missense	c.255	p.R85S	0	NULL	"HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HRDC,HMMSmart_HRDC,PatternScan_DEAH_ATP_HELICASE,superfamily_HRDC_like,HMMPfam_DEAD,HMMPfam_BDHCT,HMMSmart_DEXDc,HMMPfam_RQC,superfamily_SSF52540"	-	no_errors
BLM	641	broad.mit.edu	36	15	89113754	89113754	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	89113754	89113754	C	T	SNP	BLM	NM_000057	human	genbank	54_36p	1	reviewed	missense	c.2489	p.T830M	1	"HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540"	"HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HRDC,HMMSmart_HRDC,PatternScan_DEAH_ATP_HELICASE,superfamily_HRDC_like,HMMPfam_DEAD,HMMPfam_BDHCT,HMMSmart_DEXDc,HMMPfam_RQC,superfamily_SSF52540"	-	no_errors
BLM	641	broad.mit.edu	36	15	89153454	89153454	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	89153454	89153454	A	G	SNP	BLM	NM_000057	human	genbank	54_36p	1	reviewed	missense	c.3835	p.I1279V	1	"HMMPfam_HRDC,HMMSmart_HRDC"	"HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HRDC,HMMSmart_HRDC,PatternScan_DEAH_ATP_HELICASE,superfamily_HRDC_like,HMMPfam_DEAD,HMMPfam_BDHCT,HMMSmart_DEXDc,HMMPfam_RQC,superfamily_SSF52540"	-	no_errors
FURIN	5045	broad.mit.edu	36	15	89225877	89225902	+	Frame_Shift_Del	DEL	TGGCCGGCCTCAGCTGCGCCTTCATC	-	TGGCCGGCCTCAGCTGCGCCTTCATC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TGGCCGGCCTCAGCTGCGCCTTCATC	TGGCCGGCCTCAGCTGCGCCTTCATC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	15	89225877	89225902	TGGCCGGCCTCAGCTGCGCCTTCATC	-	DEL	FURIN	NM_002569	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2150_2175	p.V717fs	1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000	NULL	"superfamily_Prot_inh_propept,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein,HMMSmart_FU,superfamily_Grow_fac_recept"	"(deletion:cds_exon[89225520,89226112])"	no_errors
FES	2242	broad.mit.edu	36	15	89229808	89229808	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89229808	89229808	G	C	SNP	FES	NM_002005	human	genbank	54_36p	1	reviewed	missense	c.376	p.E126Q	1	NULL	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
FES	2242	broad.mit.edu	36	15	89237893	89237894	+	Missense_Mutation	DNP	TG	TG	CC	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89237893	89237894	TG	CC	DNP	FES	NM_002005	human	genbank	54_36p	1	reviewed	missense	c.2051_2052	p.L684P	1.000:1.000	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)"	"HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain"	-	no_errors
FES	2242	broad.mit.edu	36	15	89238176	89238176	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89238176	89238176	A	G	SNP	FES	NM_002005	human	genbank	54_36p	1	reviewed	missense	c.2210	p.Y737C	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	"HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain"	-	no_errors
MAN2A2	4122	broad.mit.edu	36	15	89250628	89250628	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89250628	89250628	G	T	SNP	MAN2A2	NM_006122	human	genbank	54_36p	1	validated	missense	c.732	p.E244D	1	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
MAN2A2	4122	broad.mit.edu	36	15	89255192	89255192	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89255192	89255192	A	C	SNP	MAN2A2	NM_006122	human	genbank	54_36p	1	validated	missense	c.1872	p.Q624H	0.99	superfamily_Gal_mut_like	"HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688"	-	no_errors
HDDC3	374659	broad.mit.edu	36	15	89275983	89275983	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	89275983	89275983	C	G	SNP	HDDC3	NM_198527	human	genbank	54_36p	-1	provisional	missense	c.364	p.D122H	1	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_HD"	"superfamily_SSF109604,HMMSmart_HDc,HMMPfam_HD"	-	no_errors
UNC45A	55898	broad.mit.edu	36	15	89286832	89286832	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89286832	89286832	C	T	SNP	UNC45A	NM_018671	human	genbank	54_36p	1	validated	silent	c.849	p.I283	0.92	superfamily_ARM repeat	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_2,superfamily_ARM repeat"	-	no_errors
UNC45A	55898	broad.mit.edu	36	15	89293649	89293649	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	89293649	89293649	A	G	SNP	UNC45A	NM_018671	human	genbank	54_36p	1	validated	missense	c.1978	p.T660A	1	superfamily_ARM repeat	"HMMPfam_TPR_1,HMMPfam_TPR_2,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
PRC1	9055	broad.mit.edu	36	15	89325231	89325231	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	89325231	89325231	C	G	SNP	PRC1	NM_003981	human	genbank	54_36p	-1	reviewed	missense	c.709	p.E237Q	1	HMMPfam_MAP65_ASE1	HMMPfam_MAP65_ASE1	-	no_errors
SV2B	9899	broad.mit.edu	36	15	89602662	89602662	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	89602662	89602662	C	T	SNP	SV2B	NM_014848	human	genbank	54_36p	1	validated	silent	c.792	p.G264	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
SV2B	9899	broad.mit.edu	36	15	89610891	89610891	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	89610891	89610891	C	T	SNP	SV2B	NM_014848	human	genbank	54_36p	1	validated	missense	c.1084	p.R362C	1	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	"HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter"	-	no_errors
C15orf32	145858	broad.mit.edu	36	15	90816584	90816584	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	90816584	90816584	C	T	SNP	C15orf32	NM_153040	human	genbank	54_36p	1	predicted	missense	c.202	p.H68Y	0.02	NULL	NULL	-	no_errors
MCTP2	55784	broad.mit.edu	36	15	92711912	92711912	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	92711912	92711912	G	T	SNP	MCTP2	NM_018349	human	genbank	54_36p	1	provisional	missense	c.1376	p.G459V	0.84	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
NR2F2	7026	broad.mit.edu	36	15	94676663	94676663	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	94676663	94676663	A	T	SNP	NR2F2	NM_021005	human	genbank	54_36p	1	validated	missense	c.325	p.R109W	1	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4"	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00399,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMPfam_zf-C4_C,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
IGF1R	3480	broad.mit.edu	36	15	97290401	97290401	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	15	97290401	97290401	C	A	SNP	IGF1R	NM_000875	human	genbank	54_36p	1	reviewed	missense	c.2874	p.F958L	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SYNM	23336	broad.mit.edu	36	15	97471387	97471387	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	97471387	97471387	C	T	SNP	SYNM	NM_145728	human	genbank	54_36p	1	reviewed	missense	c.878	p.T293I	0.96	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SYNM	23336	broad.mit.edu	36	15	97487291	97487291	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	97487291	97487291	G	A	SNP	SYNM	NM_145728	human	genbank	54_36p	1	reviewed	missense	c.1202	p.R401Q	0	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SYNM	23336	broad.mit.edu	36	15	97489440	97489440	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	97489440	97489440	G	C	SNP	SYNM	ENST00000336292	human	ensembl	54_36p	1	known	missense	c.3349	p.E1117Q	0.19	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
SYNM	23336	broad.mit.edu	36	15	97489608	97489608	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	97489608	97489608	G	T	SNP	SYNM	ENST00000336292	human	ensembl	54_36p	1	known	missense	c.3517	p.V1173F	0	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
SYNM	23336	broad.mit.edu	36	15	97490428	97490428	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	15	97490428	97490428	C	G	SNP	SYNM	ENST00000336292	human	ensembl	54_36p	1	known	missense	c.4337	p.T1446R	0	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
MEF2A	4205	broad.mit.edu	36	15	98068481	98068481	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	98068481	98068481	T	A	SNP	MEF2A	NM_005587	human	genbank	54_36p	1	validated	missense	c.1135	p.S379T	1	NULL	"HMMSmart_SM00432,superfamily_SRF-like,PatternScan_MADS_BOX_1,HMMPfam_SRF-TF"	-	no_errors
ADAMTS17	170691	broad.mit.edu	36	15	98620093	98620093	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	98620093	98620093	A	C	SNP	ADAMTS17	NM_139057	human	genbank	54_36p	-1	reviewed	missense	c.860	p.L287R	0.99	superfamily_Metalloproteases (zincins) catalytic domain	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors
LASS3	204219	broad.mit.edu	36	15	98842345	98842345	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	98842345	98842345	C	A	SNP	LASS3	NM_178842	human	genbank	54_36p	-1	validated	nonsense	c.340	p.E114*	0.98	"superfamily_Homeodomain-like,HMMPfam_Homeobox,HMMSmart_SM00389"	"superfamily_Homeodomain-like,HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
LRRK1	79705	broad.mit.edu	36	15	99410657	99410657	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	99410657	99410657	C	G	SNP	LRRK1	NM_024652	human	genbank	54_36p	1	validated	missense	c.3697	p.L1233V	0.98	superfamily_Protein kinase-like (PK-like)	###############################################################################################################################################################################################################################################################	-	no_errors
LRRK1	79705	broad.mit.edu	36	15	99412822	99412822	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	99412822	99412822	G	C	SNP	LRRK1	NM_024652	human	genbank	54_36p	1	validated	missense	c.4203	p.E1401D	0.27	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
SELS	55829	broad.mit.edu	36	15	99630502	99630502	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	15	99630502	99630502	G	C	SNP	SELS	NM_018445	human	genbank	54_36p	-1	reviewed	silent	c.567	p.G189	1	NULL	HMMPfam_Selenoprotein_S	-	pseudogene
MPG	4350	broad.mit.edu	36	16	75510	75510	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	75510	75510	G	T	SNP	MPG	NM_002434	human	genbank	54_36p	1	validated	missense	c.631	p.D211Y	1	"superfamily_FMT C-terminal domain-like,HMMPfam_Pur_DNA_glyco"	"superfamily_FMT C-terminal domain-like,HMMPfam_Pur_DNA_glyco"	-	no_errors
NPRL3	8131	broad.mit.edu	36	16	82697	82697	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	82697	82697	G	C	SNP	C16orf35	ENST00000262313	human	ensembl	54_36p	-1	known	missense	c.1058	p.S353C	1	HMMPfam_UPF0171	"HMMPfam_UPF0171,superfamily_Galactose-binding domain-like"	-	no_errors
NPRL3	8131	broad.mit.edu	36	16	90411	90411	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	90411	90411	C	T	SNP	C16orf35	ENST00000262313	human	ensembl	54_36p	-1	known	silent	c.726	p.L242	1	HMMPfam_UPF0171	"HMMPfam_UPF0171,superfamily_Galactose-binding domain-like"	-	no_errors
ITFG3	83986	broad.mit.edu	36	16	253326	253333	+	Frame_Shift_Del	DEL	GGCTCAGA	-	GGCTCAGA	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	GGCTCAGA	GGCTCAGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	253326	253333	GGCTCAGA	-	DEL	ITFG3	NM_032039	human	genbank	54_36p	1	validated	frame_shift_del	c.1036_1043	p.S347fs	0.000:0.000:0.000:0.000:0.001:0.000:0.004:0.006	NULL	NULL	"(deletion:cds_exon[253262,253402])"	no_errors
AXIN1	8312	broad.mit.edu	36	16	283557	283557	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	283557	283557	C	T	SNP	AXIN1	NM_003502	human	genbank	54_36p	-1	reviewed	silent	c.2118	p.Q706	1	NULL	"superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_Axin_b-cat_bind,HMMPfam_DIX,HMMSmart_SM00021"	-	no_errors
C16orf11	146325	broad.mit.edu	36	16	553413	553414	+	Missense_Mutation	DNP	TT	TT	CC	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	553413	553414	TT	CC	DNP	C16orf11	NM_145270	human	genbank	54_36p	1	predicted	missense	c.118_119	p.F40P	1.000:1.000	NULL	NULL	-	no_errors
WDR90	197335	broad.mit.edu	36	16	643656	643657	+	Missense_Mutation	DNP	TT	TT	CC	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	643656	643657	TT	CC	DNP	WDR90	NM_145294	human	genbank	54_36p	1	provisional	missense	c.1364_1365	p.V455A	0.001:0.000	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
WDR90	197335	broad.mit.edu	36	16	645066	645066	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	645066	645066	G	A	SNP	WDR90	NM_145294	human	genbank	54_36p	1	provisional	missense	c.1474	p.G492S	0.6	"HMMSmart_SM00320,superfamily_WD40 repeat-like"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
JMJD8	339123	broad.mit.edu	36	16	673195	673195	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	673195	673195	C	A	SNP	JMJD8	NM_001005920	human	genbank	54_36p	-1	validated	silent	c.615	p.G205	0.95	superfamily_Clavaminate synthase-like	superfamily_Clavaminate synthase-like	-	no_errors
FBXL16	146330	broad.mit.edu	36	16	685880	685880	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	685880	685880	C	G	SNP	FBXL16	NM_153350	human	genbank	54_36p	-1	provisional	silent	c.678	p.S226	0.44	superfamily_SSF52047	"superfamily_SSF81383,superfamily_SSF52047"	-	no_errors
MSLNL	401827	broad.mit.edu	36	16	762928	762928	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	762928	762928	A	T	SNP	MSLNL	NM_001025190	human	genbank	54_36p	-1	provisional	missense	c.2258	p.L753Q	0.98	HMMPfam_Mesothelin	HMMPfam_Mesothelin	-	no_errors
MSLNL	401827	broad.mit.edu	36	16	770434	770434	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	770434	770434	G	T	SNP	MSLNL	NM_001025190	human	genbank	54_36p	-1	provisional	missense	c.568	p.R190S	0.01	NULL	HMMPfam_Mesothelin	-	no_errors
GNG13	51764	broad.mit.edu	36	16	789055	789055	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	789055	789055	C	G	SNP	GNG13	NM_016541	human	genbank	54_36p	-1	validated	missense	c.24	p.Q8H	1	"superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL"	"superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL"	-	no_errors
LMF1	64788	broad.mit.edu	36	16	869648	869648	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	869648	869648	C	T	SNP	LMF1	NM_022773	human	genbank	54_36p	-1	validated	missense	c.820	p.E274K	1	HMMPfam_DUF1222	HMMPfam_DUF1222	-	no_errors
CACNA1H	8912	broad.mit.edu	36	16	1190530	1190530	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1190530	1190530	C	T	SNP	CACNA1H	NM_021098	human	genbank	54_36p	1	reviewed	silent	c.1077	p.I359	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
CACNA1H	8912	broad.mit.edu	36	16	1200487	1200487	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1200487	1200487	G	T	SNP	CACNA1H	NM_021098	human	genbank	54_36p	1	reviewed	missense	c.3962	p.G1321V	0.54	superfamily_Voltage-gated potassium channels	"HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels"	-	no_errors
C16orf91	283951	broad.mit.edu	36	16	1419278	1419278	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1419278	1419278	C	A	SNP	C16orf91	NM_001010878	human	genbank	54_36p	-1	predicted	silent	c.69	p.G23	0.01	NULL	NULL	-	no_errors
TELO2	9894	broad.mit.edu	36	16	1489266	1489266	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1489266	1489266	G	A	SNP	TELO2	NM_016111	human	genbank	54_36p	1	reviewed	silent	c.864	p.L288	1	NULL	HMMPfam_Telomere_reg-2	-	no_errors
IFT140	9742	broad.mit.edu	36	16	1514867	1514867	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1514867	1514867	G	A	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	silent	c.2916	p.D972	0	superfamily_TPR-like	"superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like"	-	no_errors
TMEM204	79652	broad.mit.edu	36	16	1524303	1524303	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1524303	1524303	C	T	SNP	TMEM204	NM_024600	human	genbank	54_36p	1	provisional	missense	c.26	p.A9V	0.18	NULL	NULL	-	no_errors
IFT140	9742	broad.mit.edu	36	16	1574422	1574422	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1574422	1574422	A	C	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	missense	c.1156	p.W386G	1	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40,superfamily_TPR-like"	-	no_errors
IFT140	9742	broad.mit.edu	36	16	1576198	1576198	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	1576198	1576198	T	G	SNP	IFT140	NM_014714	human	genbank	54_36p	-1	validated	silent	c.1089	p.A363	0.01	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	"HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40,superfamily_TPR-like"	-	no_errors
MAPK8IP3	23162	broad.mit.edu	36	16	1757828	1757828	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1757828	1757828	C	T	SNP	MAPK8IP3	NM_015133	human	genbank	54_36p	1	reviewed	missense	c.3428	p.S1143F	1	NULL	"HMMPfam_Jnk-SapK_ap_N,superfamily_WD40 repeat-like"	-	no_errors
FAHD1	81889	broad.mit.edu	36	16	1817674	1817674	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1817674	1817674	T	G	SNP	FAHD1	NM_001018104	human	genbank	54_36p	1	validated	missense	c.443	p.L148R	1	"superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase"	"superfamily_Fumarylacetoacetase_C-rel,HMMPfam_FAA_hydrolase"	-	no_errors
FAHD1	81889	broad.mit.edu	36	16	1817887	1817888	+	Missense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1817887	1817888	TG	CT	DNP	FAHD1	NM_031208	human	genbank	54_36p	1	validated	missense	c.656_657	p.V219A	0.998:0.894	"HMMPfam_FAA_hydrolase,superfamily_FAH"	"HMMPfam_FAA_hydrolase,superfamily_FAH"	-	no_errors
TBL3	10607	broad.mit.edu	36	16	1964217	1964217	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	1964217	1964217	C	T	SNP	TBL3	NM_006453	human	genbank	54_36p	1	reviewed	missense	c.112	p.H38Y	0.94	NULL	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_Utp13"	-	no_errors
NTHL1	4913	broad.mit.edu	36	16	2030019	2030019	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2030019	2030019	C	T	SNP	NTHL1	NM_002528	human	genbank	54_36p	-1	reviewed	silent	c.846	p.L282	1	"superfamily_DNA_glycsylse,HMMSmart_ENDO3c"	"PatternScan_ENDONUCLEASE_III_1,superfamily_DNA_glycsylse,HMMPfam_HhH-GPD,HMMSmart_ENDO3c,HMMPfam_HHH,PatternScan_ENDONUCLEASE_III_2,HMMSmart_FES"	-	no_errors
TSC2	7249	broad.mit.edu	36	16	2069154	2069154	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	2069154	2069154	G	T	SNP	TSC2	NM_000548	human	genbank	54_36p	1	reviewed	missense	c.3087	p.M1029I	1	NULL	"superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP"	-	no_errors
TRAF7	84231	broad.mit.edu	36	16	2163968	2163968	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	2163968	2163968	G	A	SNP	TRAF7	NM_032271	human	genbank	54_36p	1	validated	missense	c.1181	p.G394D	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,HMMPfam_zf-TRAF,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CASKIN1	57524	broad.mit.edu	36	16	2175362	2175362	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2175362	2175362	G	A	SNP	CASKIN1	NM_020764	human	genbank	54_36p	-1	provisional	missense	c.1097	p.S366L	0.02	superfamily_SH3	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_1"	-	no_errors
CASKIN1	57524	broad.mit.edu	36	16	2179082	2179082	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2179082	2179082	G	C	SNP	CASKIN1	NM_020764	human	genbank	54_36p	-1	provisional	missense	c.564	p.N188K	0.91	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SAM_homology"	-	no_errors
RNPS1	10921	broad.mit.edu	36	16	2245709	2245709	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2245709	2245709	C	A	SNP	RNPS1	NM_006711	human	genbank	54_36p	-1	reviewed	missense	c.696	p.E232D	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ABCA3	21	broad.mit.edu	36	16	2287485	2287485	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	2287485	2287485	G	C	SNP	ABCA3	NM_001089	human	genbank	54_36p	-1	reviewed	missense	c.2109	p.I703M	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
PDPK1	5170	broad.mit.edu	36	16	2587125	2587125	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	2587125	2587125	G	C	SNP	PDPK1	NM_002613	human	genbank	54_36p	1	validated	missense	c.1402	p.G468R	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SRRM2	23524	broad.mit.edu	36	16	2746459	2746459	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2746459	2746459	T	G	SNP	SRRM2	NM_016333	human	genbank	54_36p	1	validated	silent	c.93	p.G31	1	NULL	HMMPfam_cwf21	-	no_errors
SRRM2	23524	broad.mit.edu	36	16	2752192	2752192	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2752192	2752192	T	A	SNP	SRRM2	NM_016333	human	genbank	54_36p	1	validated	silent	c.1662	p.S554	1	NULL	HMMPfam_cwf21	-	no_errors
SRRM2	23524	broad.mit.edu	36	16	2753348	2753348	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	2753348	2753348	A	G	SNP	SRRM2	NM_016333	human	genbank	54_36p	1	validated	missense	c.2818	p.R940G	0.99	NULL	HMMPfam_cwf21	-	no_errors
SRRM2	23524	broad.mit.edu	36	16	2753699	2753700	+	Frame_Shift_Ins	INS	-	TG	-	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2753699	2753700	-	TG	INS	SRRM2	NM_016333	human	genbank	54_36p	1	validated	frame_shift_ins	c.3169_3170	p.K1058fs	0.980:0.917	NULL	HMMPfam_cwf21	-	no_errors
PRSS21	10942	broad.mit.edu	36	16	2811384	2811384	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	2811384	2811384	C	G	SNP	PRSS21	NM_006799	human	genbank	54_36p	1	reviewed	missense	c.722	p.P241R	1	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
ZG16B	124220	broad.mit.edu	36	16	2821991	2821991	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	2821991	2821991	T	C	SNP	ZG16B	NM_145252	human	genbank	54_36p	1	validated	missense	c.457	p.S153P	0	superfamily_Mannose-bd_lectin	superfamily_Mannose-bd_lectin	-	no_errors
FLYWCH2	114984	broad.mit.edu	36	16	2889112	2889112	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2889112	2889112	C	T	SNP	FLYWCH2	NM_138439	human	genbank	54_36p	1	validated	silent	c.384	p.N128	0	NULL	NULL	-	no_errors
PAQR4	124222	broad.mit.edu	36	16	2961897	2961898	+	Missense_Mutation	DNP	GG	GG	CT	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2961897	2961898	GG	CT	DNP	PAQR4	NM_152341	human	genbank	54_36p	1	validated	missense	c.769_770	p.G257L	1.000:1.000	NULL	HMMPfam_HlyIII	-	no_errors
PKMYT1	9088	broad.mit.edu	36	16	2964085	2964085	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	2964085	2964085	C	T	SNP	PKMYT1	NM_004203	human	genbank	54_36p	-1	reviewed	silent	c.1227	p.P409	0.17	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CLDN6	9074	broad.mit.edu	36	16	3005621	3005621	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	3005621	3005621	G	C	SNP	CLDN6	NM_021195	human	genbank	54_36p	-1	validated	missense	c.403	p.P135A	1	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
ZSCAN10	84891	broad.mit.edu	36	16	3079671	3079671	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	3079671	3079671	G	A	SNP	ZSCAN10	NM_032805	human	genbank	54_36p	-1	provisional	missense	c.1600	p.R534C	0.03	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF213	7760	broad.mit.edu	36	16	3130723	3130723	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	3130723	3130723	C	T	SNP	ZNF213	NM_004220	human	genbank	54_36p	1	validated	silent	c.754	p.L252	0	HMMSmart_SM00349	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MEFV	4210	broad.mit.edu	36	16	3233272	3233272	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	3233272	3233272	T	G	SNP	MEFV	NM_000243	human	genbank	54_36p	-1	reviewed	missense	c.2216	p.H739P	0.33	"HMMPfam_SPRY,HMMSmart_SM00449"	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
MEFV	4210	broad.mit.edu	36	16	3239757	3239757	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	3239757	3239757	C	A	SNP	MEFV	NM_000243	human	genbank	54_36p	-1	reviewed	missense	c.935	p.S312I	0.82	NULL	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMPfam_PAAD_DAPIN,HMMSmart_SM00589,superfamily_DEATH domain,HMMSmart_SM00449,superfamily_B-box zinc-binding domain"	-	no_errors
OR2C1	4993	broad.mit.edu	36	16	3346250	3346250	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3346250	3346250	C	T	SNP	OR2C1	NM_012368	human	genbank	54_36p	1	validated	silent	c.309	p.V103	0.01	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZNF434	54925	broad.mit.edu	36	16	3374789	3374789	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3374789	3374789	G	A	SNP	ZNF434	NM_017810	human	genbank	54_36p	-1	provisional	missense	c.269	p.T90I	0.03	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF434	54925	broad.mit.edu	36	16	3380121	3380121	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3380121	3380121	C	T	SNP	ZNF434	NM_017810	human	genbank	54_36p	-1	provisional	missense	c.5	p.R2H	0.58	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF597	146434	broad.mit.edu	36	16	3427015	3427015	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	3427015	3427015	G	A	SNP	ZNF597	NM_152457	human	genbank	54_36p	-1	provisional	nonsense	c.685	p.R229*	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NLRC3	197358	broad.mit.edu	36	16	3538161	3538161	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3538161	3538161	G	C	SNP	NLRC3	ENST00000301749	human	ensembl	54_36p	-1	known	missense	c.2884	p.L962V	1	"superfamily_RNI-like,HMMSmart_SM00368"	"PatternScan_LIPOCALIN,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRC3	197358	broad.mit.edu	36	16	3538756	3538756	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3538756	3538756	T	C	SNP	NLRC3	ENST00000301749	human	ensembl	54_36p	-1	known	splice_site	c.2742-2	e13-2	0.88	-	-	-	no_errors
CREBBP	1387	broad.mit.edu	36	16	3726811	3726811	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3726811	3726811	C	G	SNP	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	silent	c.4401	p.V1467	0.99	HMMPfam_DUF906	###############################################################################################################################################################################################################################################################	-	no_errors
CREBBP	1387	broad.mit.edu	36	16	3728597	3728597	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3728597	3728597	A	G	SNP	CREBBP	NM_004380	human	genbank	54_36p	-1	reviewed	missense	c.4358	p.I1453T	1	HMMPfam_DUF906	###############################################################################################################################################################################################################################################################	-	no_errors
ADCY9	115	broad.mit.edu	36	16	3956250	3956250	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	16	3956250	3956250	T	C	SNP	ADCY9	NM_001116	human	genbank	54_36p	-1	reviewed	missense	c.3589	p.M1197V	1	"HMMSmart_SM00044,HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1"	"HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ADCY9	115	broad.mit.edu	36	16	3982225	3982225	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	3982225	3982225	C	T	SNP	ADCY9	NM_001116	human	genbank	54_36p	-1	reviewed	silent	c.2130	p.S710	1	NULL	"HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
ADCY9	115	broad.mit.edu	36	16	4104976	4104976	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	4104976	4104976	C	A	SNP	ADCY9	NM_001116	human	genbank	54_36p	-1	reviewed	missense	c.469	p.V157L	0.9	NULL	"HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1"	-	no_errors
SRL	6345	broad.mit.edu	36	16	4182678	4182678	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	4182678	4182678	G	A	SNP	SRL	NM_001098814	human	genbank	54_36p	-1	validated	missense	c.899	p.P300L	0.99	superfamily_SSF52540	superfamily_SSF52540	-	no_errors
SRL	6345	broad.mit.edu	36	16	4194548	4194548	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	4194548	4194548	G	A	SNP	SRL	NM_001098814	human	genbank	54_36p	-1	validated	silent	c.150	p.S50	0.02	NULL	superfamily_SSF52540	-	no_errors
DNAJA3	9093	broad.mit.edu	36	16	4431521	4431521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	4431521	4431521	G	A	SNP	DNAJA3	NM_005147	human	genbank	54_36p	1	validated	missense	c.574	p.E192K	1	superfamily_DnaJ_N	"superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP_DnaJ_cys-rich,HMMPfam_DnaJ_CXXCXGXG,HMMPfam_DnaJ_C,superfamily_HSP40_DnaJ_pep"	-	no_errors
DNAJA3	9093	broad.mit.edu	36	16	4433164	4433164	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	4433164	4433164	C	T	SNP	DNAJA3	NM_005147	human	genbank	54_36p	1	validated	missense	c.929	p.A310V	1	HMMPfam_DnaJ_C	"HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP_DnaJ_cys-rich,HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,HMMPfam_DnaJ_C,superfamily_HSP40_DnaJ_pep,PatternScan_DNAJ_1"	-	no_errors
MGRN1	23295	broad.mit.edu	36	16	4640457	4640457	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	4640457	4640457	T	G	SNP	MGRN1	NM_015246	human	genbank	54_36p	1	validated	missense	c.179	p.L60R	1	NULL	"superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
MGRN1	23295	broad.mit.edu	36	16	4658286	4658286	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	4658286	4658286	C	T	SNP	MGRN1	NM_015246	human	genbank	54_36p	1	validated	missense	c.698	p.S233F	1	NULL	"HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
ROGDI	79641	broad.mit.edu	36	16	4791546	4791546	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	4791546	4791546	C	T	SNP	ROGDI	NM_024589	human	genbank	54_36p	-1	provisional	silent	c.159	p.E53	1	HMMPfam_Rogdi_lz	HMMPfam_Rogdi_lz	-	no_errors
PPL	5493	broad.mit.edu	36	16	4875454	4875459	+	In_Frame_Del	DEL	GCCTCC	-	-	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	GCCTCC	GCCTCC	-	-	GCCTCC	GCCTCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	16	4875454	4875459	GCCTCC	-	DEL	PPL	NM_002705	human	genbank	54_36p	-1	reviewed	in_frame_del	c.3203_3198	p.AE1068in_frame_del	0.149:0.185:0.514:0.965:0.988:0.996	NULL	"HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	"(deletion:cds_exon[4873386,4876049])"	no_errors
PPL	5493	broad.mit.edu	36	16	4880198	4880198	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	4880198	4880198	C	T	SNP	PPL	NM_002705	human	genbank	54_36p	-1	reviewed	silent	c.2301	p.L767	1	"superfamily_Spectrin repeat,HMMSmart_SM00150"	"HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin"	-	no_errors
ALG1	56052	broad.mit.edu	36	16	5071002	5071002	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	5071002	5071002	A	G	SNP	ALG1	NM_019109	human	genbank	54_36p	1	reviewed	missense	c.1016	p.Q339R	0.92	"superfamily_SSF53756,HMMPfam_Glycos_transf_1"	"superfamily_SSF53756,HMMPfam_Glycos_transf_1"	-	no_errors
RBFOX1	54715	broad.mit.edu	36	16	7620669	7620669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	7620669	7620669	T	C	SNP	A2BP1	NM_145891	human	genbank	54_36p	1	reviewed	missense	c.800	p.L267P	1	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
PMM2	5373	broad.mit.edu	36	16	8803258	8803258	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	8803258	8803258	G	A	SNP	PMM2	NM_000303	human	genbank	54_36p	1	reviewed	silent	c.168	p.L56	1	"superfamily_HAD-like,HMMPfam_PMM"	"superfamily_HAD-like,HMMPfam_PMM"	-	no_errors
USP7	7874	broad.mit.edu	36	16	8921759	8921759	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	8921759	8921759	G	A	SNP	USP7	NM_003470	human	genbank	54_36p	-1	validated	missense	c.569	p.T190I	1	"superfamily_Traf_like,HMMPfam_MATH"	"superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
TEKT5	146279	broad.mit.edu	36	16	10628963	10628963	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	10628963	10628963	G	A	SNP	TEKT5	NM_144674	human	genbank	54_36p	-1	provisional	missense	c.1436	p.P479L	0.99	NULL	HMMPfam_Tektin	-	no_errors
TEKT5	146279	broad.mit.edu	36	16	10628965	10628965	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	10628965	10628965	G	A	SNP	TEKT5	NM_144674	human	genbank	54_36p	-1	provisional	silent	c.1434	p.T478	0.98	NULL	HMMPfam_Tektin	-	no_errors
NUBP1	4682	broad.mit.edu	36	16	10758121	10758121	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	10758121	10758121	G	C	SNP	NUBP1	NM_002484	human	genbank	54_36p	1	validated	missense	c.434	p.R145T	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_MRP,HMMPfam_ParA"	-	no_errors
CLEC16A	23274	broad.mit.edu	36	16	11179928	11179928	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	11179928	11179928	C	A	SNP	CLEC16A	NM_015226	human	genbank	54_36p	1	validated	missense	c.3042	p.D1014E	0.94	NULL	"HMMPfam_FPL,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
C16orf75	116028	broad.mit.edu	36	16	11352077	11352077	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	11352077	11352077	C	T	SNP	C16orf75	NM_152308	human	genbank	54_36p	1	predicted	missense	c.373	p.L125F	0.97	NULL	NULL	-	no_errors
ZC3H7A	29066	broad.mit.edu	36	16	11765003	11765003	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	11765003	11765003	T	C	SNP	ZC3H7A	NM_014153	human	genbank	54_36p	-1	provisional	missense	c.1834	p.I612V	1	NULL	"superfamily_TPR-like,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZC3H7A	29066	broad.mit.edu	36	16	11768901	11768901	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	11768901	11768901	G	C	SNP	ZC3H7A	NM_014153	human	genbank	54_36p	-1	provisional	missense	c.1395	p.N465K	0.96	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356,PatternScan_ZINC_FINGER_C2H2_1,superfamily_TPR-like,superfamily_CCCH zinc finger"	-	no_errors
GSPT1	2935	broad.mit.edu	36	16	11888276	11888276	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	11888276	11888276	C	T	SNP	GSPT1	NM_002094	human	genbank	54_36p	-1	validated	missense	c.557	p.R186K	1	"superfamily_SSF52540,HMMPfam_GTP_EFTU"	"superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C"	-	no_errors
SNX29	92017	broad.mit.edu	36	16	12479143	12479143	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	12479143	12479143	C	T	SNP	SNX29	NM_001080530	human	genbank	54_36p	1	provisional	missense	c.949	p.H317Y	1	"superfamily_PX domain,HMMSmart_SM00312,HMMPfam_PX"	"superfamily_PX domain,HMMSmart_SM00312,HMMPfam_PX"	-	no_errors
ERCC4	2072	broad.mit.edu	36	16	13936661	13936661	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	13936661	13936661	C	T	SNP	ERCC4	NM_005236	human	genbank	54_36p	1	reviewed	silent	c.1371	p.D457	0.01	NULL	"superfamily_Restrict_endonuc_II-like_core,HMMPfam_ERCC4"	-	no_errors
ERCC4	2072	broad.mit.edu	36	16	13937037	13937037	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	13937037	13937037	G	A	SNP	ERCC4	NM_005236	human	genbank	54_36p	1	reviewed	missense	c.1747	p.A583T	1	NULL	"HMMPfam_ERCC4,superfamily_Restrict_endonuc_II-like_core"	-	no_errors
ERCC4	2072	broad.mit.edu	36	16	13949294	13949294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	13949294	13949294	C	T	SNP	ERCC4	NM_005236	human	genbank	54_36p	1	reviewed	silent	c.2340	p.S780	0.89	superfamily_Restrict_endonuc_II-like_core	"HMMPfam_ERCC4,superfamily_Restrict_endonuc_II-like_core"	-	no_errors
MKL2	57496	broad.mit.edu	36	16	14248352	14248352	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	14248352	14248352	G	C	SNP	MKL2	NM_014048	human	genbank	54_36p	1	validated	missense	c.1734	p.E578D	1	NULL	"HMMSmart_RPEL,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	-	no_errors
PARN	5073	broad.mit.edu	36	16	14438116	14438116	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	14438116	14438116	T	A	SNP	PARN	NM_002582	human	genbank	54_36p	-1	reviewed	missense	c.1879	p.N627Y	0.02	NULL	"HMMPfam_CAF1,superfamily_Ribonuclease H-like,superfamily_R3H domain,HMMPfam_R3H,superfamily_RNA-binding domain RBD,HMMPfam_RNA_bind"	-	no_errors
BFAR	51283	broad.mit.edu	36	16	14651187	14651187	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	14651187	14651187	G	A	SNP	BFAR	NM_016561	human	genbank	54_36p	1	provisional	missense	c.494	p.S165N	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
NOMO1	23420	broad.mit.edu	36	16	14868039	14868039	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	14868039	14868039	C	T	SNP	NOMO1	NM_014287	human	genbank	54_36p	1	reviewed	missense	c.1796	p.A599V	1	NULL	"superfamily_Starch-binding domain-like,HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain"	-	no_errors
NOMO1	23420	broad.mit.edu	36	16	14888154	14888154	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	14888154	14888154	A	C	SNP	NOMO1	NM_014287	human	genbank	54_36p	1	reviewed	silent	c.3258	p.P1086	0.99	NULL	"HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain,superfamily_Starch-binding domain-like"	-	no_errors
RRN3	54700	broad.mit.edu	36	16	15076216	15076216	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	15076216	15076216	C	T	SNP	RRN3	NM_018427	human	genbank	54_36p	-1	validated	missense	c.862	p.E288K	1	HMMPfam_RRN3	HMMPfam_RRN3	-	no_errors
KIAA0430	9665	broad.mit.edu	36	16	15612940	15612959	+	Splice_Site	DEL	ATCAACTCACCAGTGATAAG	-	ATCAACTCACCAGTGATAAG	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	ATCAACTCACCAGTGATAAG	ATCAACTCACCAGTGATAAG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	15612940	15612959	ATCAACTCACCAGTGATAAG	-	DEL	KIAA0430	NM_014647	human	genbank	54_36p	-1	validated	splice_site_del	c.3617+11_3617+1	e18-1	0.000:0.003:0.004:0.181:0.988:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.999:1.000	-	-	"(deletion:intron[15612467,15612949], cds_exon[15612950,15613092])"	no_errors
MYH11	4629	broad.mit.edu	36	16	15749460	15749460	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	15749460	15749460	G	A	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.2146	p.R716C	1	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head"	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH11	4629	broad.mit.edu	36	16	15751539	15751539	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	15751539	15751539	G	A	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.2036	p.T679M	0.96	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH11	4629	broad.mit.edu	36	16	15751638	15751638	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	15751638	15751638	A	C	SNP	MYH11	NM_001040114	human	genbank	54_36p	-1	reviewed	missense	c.1937	p.L646R	0.99	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
ABCC1	4363	broad.mit.edu	36	16	16104033	16104033	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	16104033	16104033	A	G	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	missense	c.2693	p.N898S	1	NULL	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC1	4363	broad.mit.edu	36	16	16116173	16116173	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	16116173	16116173	G	A	SNP	ABCC1	NM_004996	human	genbank	54_36p	1	reviewed	silent	c.3129	p.L1043	0.09	"HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain"	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCC6	368	broad.mit.edu	36	16	16186389	16186389	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	16186389	16186389	G	A	SNP	ABCC6	NM_001171	human	genbank	54_36p	-1	reviewed	missense	c.1871	p.A624V	0.04	NULL	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
XYLT1	64131	broad.mit.edu	36	16	17199622	17199622	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	WU-454;Capture			Illumina GAIIx	16	17199622	17199622	C	T	SNP	XYLT1	NM_022166	human	genbank	54_36p	-1	validated	missense	c.1237	p.D413N	1	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
SMG1	23049	broad.mit.edu	36	16	18790280	18790280	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	18790280	18790280	C	T	SNP	SMG1	NM_015092	human	genbank	54_36p	-1	reviewed	missense	c.2209	p.E737K	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC"	-	no_errors
TMC7	79905	broad.mit.edu	36	16	18964167	18964167	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	18964167	18964167	T	A	SNP	TMC7	NM_024847	human	genbank	54_36p	1	provisional	missense	c.1459	p.W487R	1	HMMPfam_TMC	HMMPfam_TMC	-	no_errors
GDE1	51573	broad.mit.edu	36	16	19435914	19435914	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	19435914	19435914	A	T	SNP	GDE1	NM_016641	human	genbank	54_36p	-1	validated	silent	c.360	p.T120	0.87	"superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD"	"superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD"	-	no_errors
GDE1	51573	broad.mit.edu	36	16	19440544	19440544	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	19440544	19440544	G	C	SNP	GDE1	NM_016641	human	genbank	54_36p	-1	validated	missense	c.244	p.L82V	1	"HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl"	"HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl"	-	no_errors
C16orf62	57020	broad.mit.edu	36	16	19491949	19491949	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	19491949	19491949	C	G	SNP	C16orf62	NM_020314	human	genbank	54_36p	1	predicted	missense	c.293	p.S98C	0.97	NULL	NULL	-	no_errors
GP2	2813	broad.mit.edu	36	16	20242894	20242894	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20242894	20242894	G	T	SNP	GP2	NM_001007240	human	genbank	54_36p	-1	validated	missense	c.280	p.R94S	1	NULL	"HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
ACSM5	54988	broad.mit.edu	36	16	20348527	20348527	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	20348527	20348527	G	T	SNP	ACSM5	NM_017888	human	genbank	54_36p	1	validated	missense	c.1028	p.C343F	0.98	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
LOC81691	81691	broad.mit.edu	36	16	20740700	20740700	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20740700	20740700	G	C	SNP	LOC81691	NM_030941	human	genbank	54_36p	1	validated	missense	c.591	p.M197I	1	NULL	"superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_RNA-binding domain RBD"	-	no_errors
DCUN1D3	123879	broad.mit.edu	36	16	20779062	20779062	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20779062	20779062	G	T	SNP	DCUN1D3	NM_173475	human	genbank	54_36p	-1	validated	missense	c.562	p.Q188K	1	HMMPfam_DUF298	HMMPfam_DUF298	-	no_errors
DCUN1D3	123879	broad.mit.edu	36	16	20781014	20781014	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20781014	20781014	A	G	SNP	DCUN1D3	NM_173475	human	genbank	54_36p	-1	validated	silent	c.348	p.N116	1	NULL	HMMPfam_DUF298	-	no_errors
DNAH3	55567	broad.mit.edu	36	16	20882913	20882913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20882913	20882913	G	A	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.9794	p.S3265F	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	broad.mit.edu	36	16	20906662	20906662	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20906662	20906662	T	C	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.6736	p.M2246V	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	broad.mit.edu	36	16	20938586	20938586	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20938586	20938586	C	G	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.5883	p.W1961C	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	broad.mit.edu	36	16	20938623	20938623	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	20938623	20938623	A	T	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.5846	p.L1949H	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	broad.mit.edu	36	16	20988398	20988398	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	20988398	20988398	T	A	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.3220	p.I1074F	0.09	HMMPfam_DHC_N2	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH3	55567	broad.mit.edu	36	16	21064853	21064853	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	21064853	21064853	G	T	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.175	p.P59T	1	NULL	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ZP2	7783	broad.mit.edu	36	16	21130366	21130366	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	21130366	21130366	C	A	SNP	ZP2	NM_003460	human	genbank	54_36p	-1	reviewed	missense	c.4	p.A2S	0.28	NULL	"HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1"	-	no_errors
ANKS4B	257629	broad.mit.edu	36	16	21168707	21168707	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	21168707	21168707	A	T	SNP	ANKS4B	NM_145865	human	genbank	54_36p	1	validated	missense	c.319	p.S107C	1	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
ANKS4B	257629	broad.mit.edu	36	16	21169284	21169284	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	21169284	21169284	C	G	SNP	ANKS4B	NM_145865	human	genbank	54_36p	1	validated	missense	c.896	p.P299R	0.01	NULL	"HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain"	-	no_errors
NPIPL3	23117	broad.mit.edu	36	16	21323772	21323772	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	21323772	21323772	G	C	SNP	NPIPL3	NM_130464	human	genbank	54_36p	-1	validated	missense	c.986	p.T329S	0	HMMPfam_NPIP	"HMMPfam_NPIP,PatternScan_TCP1_3"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
EEF2K	29904	broad.mit.edu	36	16	22185593	22185593	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	22185593	22185593	C	T	SNP	EEF2K	NM_013302	human	genbank	54_36p	1	reviewed	silent	c.1659	p.F553	1	"HMMPfam_Sel1,superfamily_SSF81901"	"superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase,HMMPfam_Sel1,superfamily_SSF81901"	-	no_errors
EEF2K	29904	broad.mit.edu	36	16	22185672	22185672	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	22185672	22185672	C	T	SNP	EEF2K	NM_013302	human	genbank	54_36p	1	reviewed	missense	c.1738	p.H580Y	1	superfamily_SSF81901	"HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,HMMPfam_Sel1,superfamily_Kinase_like,superfamily_SSF81901"	-	no_errors
POLR3E	55718	broad.mit.edu	36	16	22235495	22235495	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	22235495	22235495	G	C	SNP	POLR3E	NM_018119	human	genbank	54_36p	1	validated	missense	c.715	p.V239L	0.98	HMMPfam_Sin_N	HMMPfam_Sin_N	-	no_errors
LOC100132247	100132247	broad.mit.edu	36	16	22453485	22453496	+	In_Frame_Del	DEL	TCCACCCTCAGC	-	TCCACCCTCAGC	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	TCCACCCTCAGC	TCCACCCTCAGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	16	22453485	22453496	TCCACCCTCAGC	-	DEL	uc010bxh.1	ENST00000342168	human	ensembl	54_36p	1	known	in_frame_del	c.1680_1691	p.APPS564in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	HMMPfam_NPIP	HMMPfam_NPIP	"(deletion:cds_exon[22452448,22453740])"	no_errors
USP31	57478	broad.mit.edu	36	16	22987056	22987056	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	22987056	22987056	C	T	SNP	USP31	NM_020718	human	genbank	54_36p	-1	validated	missense	c.3871	p.E1291K	1	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP31	57478	broad.mit.edu	36	16	22988358	22988358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	22988358	22988358	C	T	SNP	USP31	NM_020718	human	genbank	54_36p	-1	validated	missense	c.2569	p.A857T	1	NULL	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
SCNN1G	6340	broad.mit.edu	36	16	23116230	23116230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	23116230	23116230	C	A	SNP	SCNN1G	NM_001039	human	genbank	54_36p	1	validated	missense	c.1058	p.T353N	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
SCNN1B	6338	broad.mit.edu	36	16	23297581	23297581	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	23297581	23297581	C	A	SNP	SCNN1B	NM_000336	human	genbank	54_36p	1	validated	silent	c.1458	p.T486	0.99	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
SCNN1B	6338	broad.mit.edu	36	16	23299425	23299425	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	23299425	23299425	G	C	SNP	SCNN1B	NM_000336	human	genbank	54_36p	1	validated	silent	c.1725	p.P575	1	NULL	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
GGA2	23062	broad.mit.edu	36	16	23388842	23388842	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	23388842	23388842	G	T	SNP	GGA2	NM_015044	human	genbank	54_36p	-1	reviewed	silent	c.1596	p.I532	1	"superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2"	"HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS,superfamily_SSF89009,HMMPfam_GAT,superfamily_Clath_adapt,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2"	-	no_errors
PALB2	79728	broad.mit.edu	36	16	23553912	23553912	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	16	23553912	23553912	T	C	SNP	PALB2	NM_024675	human	genbank	54_36p	-1	reviewed	missense	c.1456	p.K486E	0.07	NULL	"PatternScan_WD_REPEATS_1,superfamily_WD40_like"	-	no_errors
PALB2	79728	broad.mit.edu	36	16	23554260	23554260	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	23554260	23554260	G	A	SNP	PALB2	NM_024675	human	genbank	54_36p	-1	reviewed	nonsense	c.1108	p.Q370*	0.03	NULL	"superfamily_WD40_like,PatternScan_WD_REPEATS_1"	-	no_errors
PALB2	79728	broad.mit.edu	36	16	23554581	23554581	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	23554581	23554581	C	A	SNP	PALB2	NM_024675	human	genbank	54_36p	-1	reviewed	nonsense	c.787	p.E263*	0.17	NULL	"superfamily_WD40_like,PatternScan_WD_REPEATS_1"	-	no_errors
ERN2	10595	broad.mit.edu	36	16	23619788	23619788	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	23619788	23619788	A	G	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	missense	c.1496	p.M499T	0.47	NULL	"superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580"	-	no_errors
ERN2	10595	broad.mit.edu	36	16	23621340	23621340	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	23621340	23621340	G	T	SNP	ERN2	NM_033266	human	genbank	54_36p	-1	validated	missense	c.1097	p.A366D	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_PQQ,HMMSmart_SM00580,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_Pkinase,HMMSmart_SM00564"	-	no_errors
PRKCB	5579	broad.mit.edu	36	16	24073596	24073596	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	24073596	24073596	T	A	SNP	PRKCB	NM_002738	human	genbank	54_36p	1	reviewed	missense	c.1156	p.C386S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC5A11	115584	broad.mit.edu	36	16	24809691	24809691	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	24809691	24809691	G	T	SNP	SLC5A11	NM_052944	human	genbank	54_36p	1	provisional	missense	c.665	p.S222I	1	HMMPfam_SSF	HMMPfam_SSF	-	no_errors
ZKSCAN2	342357	broad.mit.edu	36	16	25165606	25165606	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	25165606	25165606	T	A	SNP	ZKSCAN2	NM_001012981	human	genbank	54_36p	-1	validated	missense	c.1412	p.D471V	1	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HS3ST4	9951	broad.mit.edu	36	16	25611891	25611891	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	25611891	25611891	C	G	SNP	HS3ST4	ENST00000331351	human	ensembl	54_36p	1	known	missense	c.652	p.R218G	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
JMJD5	79831	broad.mit.edu	36	16	27129149	27129149	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	27129149	27129149	C	T	SNP	JMJD5	NM_024773	human	genbank	54_36p	1	reviewed	silent	c.204	p.S68	0.53	NULL	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558"	-	no_errors
IL4R	3566	broad.mit.edu	36	16	27281903	27281903	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	27281903	27281903	G	A	SNP	IL4R	NM_000418	human	genbank	54_36p	1	reviewed	missense	c.1729	p.E577K	0.18	NULL	"superfamily_Fibronectin type III,HMMPfam_IL4Ra_N,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
IL4R	3566	broad.mit.edu	36	16	27282455	27282455	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	27282455	27282455	G	A	SNP	IL4R	NM_000418	human	genbank	54_36p	1	reviewed	missense	c.2281	p.A761T	0	NULL	"PatternScan_HEMATOPO_REC_S_F1,superfamily_Fibronectin type III,HMMPfam_IL4Ra_N"	-	no_errors
IL21R	50615	broad.mit.edu	36	16	27356479	27356504	+	Frame_Shift_Del	DEL	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	GAGTGTGGCAGCTTTCTCCTGGCTGA	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	GAGTGTGGCAGCTTTCTCCTGGCTGA	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	-	GAGTGTGGCAGCTTTCTCCTGGCTGA	GAGTGTGGCAGCTTTCTCCTGGCTGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	16	27356479	27356504	GAGTGTGGCAGCTTTCTCCTGGCTGA	-	DEL	IL21R	NM_021798	human	genbank	54_36p	1	reviewed	frame_shift_del	c.322_347	p.C109fs	0.967:0.981:0.989:0.991:0.988:0.949:0.965:0.969:0.958:0.953:0.952:0.952:0.931:0.803:0.042:0.001:0.000:0.001:0.004:0.016:0.016:0.016:0.018:0.007:0.001:0.002	NULL	"superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_S_F1"	"(deletion:cds_exon[27356310,27356509])"	no_errors
IL21R	50615	broad.mit.edu	36	16	27367753	27367753	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	27367753	27367753	G	A	SNP	IL21R	NM_021798	human	genbank	54_36p	1	reviewed	missense	c.1265	p.G422E	0	NULL	"superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
GTF3C1	2975	broad.mit.edu	36	16	27408567	27408567	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	27408567	27408567	T	A	SNP	GTF3C1	NM_001520	human	genbank	54_36p	-1	validated	splice_site	c.3152-2	e20-2	0.94	-	-	-	no_errors
GTF3C1	2975	broad.mit.edu	36	16	27457177	27457177	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	27457177	27457177	A	C	SNP	GTF3C1	NM_001520	human	genbank	54_36p	-1	validated	missense	c.433	p.W145G	1	HMMPfam_B-block_TFIIIC	HMMPfam_B-block_TFIIIC	-	no_errors
KIAA0556	23247	broad.mit.edu	36	16	27627607	27627607	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	16	27627607	27627607	G	A	SNP	KIAA0556	NM_015202	human	genbank	54_36p	1	validated	silent	c.1470	p.S490	0	superfamily_Galactose-binding domain-like	"superfamily_Galactose-binding domain-like,PatternScan_AKH"	-	no_errors
KIAA0556	23247	broad.mit.edu	36	16	27695791	27695791	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	27695791	27695791	G	T	SNP	KIAA0556	NM_015202	human	genbank	54_36p	1	validated	silent	c.4491	p.V1497	1	NULL	"PatternScan_AKH,superfamily_Galactose-binding domain-like"	-	no_errors
GSG1L	146395	broad.mit.edu	36	16	27747764	27747764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	27747764	27747764	G	A	SNP	GSG1L	NM_001109763	human	genbank	54_36p	-1	validated	missense	c.677	p.S226F	1	NULL	HMMPfam_GSG-1	-	no_errors
XPO6	23214	broad.mit.edu	36	16	28023443	28023443	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	28023443	28023443	G	A	SNP	XPO6	NM_015171	human	genbank	54_36p	-1	provisional	silent	c.2871	p.T957	0.96	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_Xpo1"	-	no_errors
SULT1A1	6817	broad.mit.edu	36	16	28527166	28527166	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	28527166	28527166	T	C	SNP	SULT1A1	NM_001055	human	genbank	54_36p	-1	reviewed	missense	c.319	p.T107A	0.93	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
SH2B1	25970	broad.mit.edu	36	16	28787832	28787832	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	28787832	28787832	A	C	SNP	SH2B1	NM_015503	human	genbank	54_36p	1	reviewed	missense	c.1046	p.E349A	0.99	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
ATP2A1	487	broad.mit.edu	36	16	28817150	28817150	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	28817150	28817150	G	A	SNP	ATP2A1	NM_173201	human	genbank	54_36p	1	reviewed	silent	c.1641	p.A547	0.02	"superfamily_Calcium ATPase transmembrane domain M,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase"	###############################################################################################################################################################################################################################################################	-	no_errors
RABEP2	79874	broad.mit.edu	36	16	28829932	28829932	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	28829932	28829932	G	A	SNP	RABEP2	NM_024816	human	genbank	54_36p	-1	validated	missense	c.964	p.R322W	1	NULL	"HMMPfam_Rabaptin,PatternScan_ODR_DC_2_2,HMMPfam_Rab5-bind"	-	no_errors
CD19	930	broad.mit.edu	36	16	28851796	28851796	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	28851796	28851796	C	A	SNP	CD19	NM_001770	human	genbank	54_36p	1	reviewed	missense	c.419	p.S140Y	0	NULL	"superfamily_SSF48726,HMMSmart_IG"	-	no_errors
NFATC2IP	84901	broad.mit.edu	36	16	28873481	28873482	+	Nonsense_Mutation	DNP	AG	AG	CT	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	28873481	28873482	AG	CT	DNP	NFATC2IP	NM_032815	human	genbank	54_36p	1	validated	nonsense	c.555_556	p.EEK185D*	0.921:0.923	NULL	"superfamily_Ubiquitin-like,HMMSmart_SM00213"	-	no_errors
NFATC2IP	84901	broad.mit.edu	36	16	28875118	28875118	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	28875118	28875118	A	G	SNP	NFATC2IP	NM_032815	human	genbank	54_36p	1	validated	missense	c.805	p.I269V	1	"HMMSmart_SM00213,superfamily_Ubiquitin-like"	"HMMSmart_SM00213,superfamily_Ubiquitin-like"	-	no_errors
SPN	6693	broad.mit.edu	36	16	29583716	29583716	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	29583716	29583716	C	A	SNP	SPN	NM_001030288	human	genbank	54_36p	1	validated	missense	c.1166	p.P389H	0.01	NULL	NULL	-	no_errors
MAZ	4150	broad.mit.edu	36	16	29728362	29728362	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	29728362	29728362	G	C	SNP	MAZ	NM_001042539	human	genbank	54_36p	1	validated	missense	c.1280	p.G427A	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PRRT2	112476	broad.mit.edu	36	16	29732014	29732014	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	29732014	29732014	G	A	SNP	PRRT2	NM_145239	human	genbank	54_36p	1	validated	silent	c.138	p.E46	0.93	NULL	HMMPfam_CD225	-	no_errors
MVP	9961	broad.mit.edu	36	16	29760656	29760656	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	29760656	29760656	G	A	SNP	MVP	NM_005115	human	genbank	54_36p	1	reviewed	missense	c.1430	p.R477Q	0.18	NULL	HMMPfam_Vault	-	no_errors
TBC1D10B	26000	broad.mit.edu	36	16	30288079	30288079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30288079	30288079	G	A	SNP	TBC1D10B	NM_015527	human	genbank	54_36p	-1	validated	silent	c.102	p.F34	1	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC,PatternScan_ILVD_EDD_1"	-	no_errors
ZNF48	197407	broad.mit.edu	36	16	30316593	30316593	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30316593	30316593	C	A	SNP	ZNF48	NM_152652	human	genbank	54_36p	1	provisional	missense	c.521	p.A174D	0.61	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF48	197407	broad.mit.edu	36	16	30317288	30317288	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30317288	30317288	C	G	SNP	ZNF48	NM_152652	human	genbank	54_36p	1	provisional	missense	c.1216	p.L406V	0.98	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ITGAL	3683	broad.mit.edu	36	16	30414944	30414944	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	30414944	30414944	T	C	SNP	ITGAL	NM_002209	human	genbank	54_36p	1	reviewed	missense	c.1529	p.L510P	0.99	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191"	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ZNF785	146540	broad.mit.edu	36	16	30501512	30501512	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30501512	30501512	C	T	SNP	ZNF785	NM_152458	human	genbank	54_36p	-1	provisional	missense	c.1088	p.R363H	0.07	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SRCAP	10847	broad.mit.edu	36	16	30639136	30639136	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	30639136	30639136	C	G	SNP	SRCAP	NM_006662	human	genbank	54_36p	1	validated	silent	c.2970	p.V990	1	NULL	"HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_AT_hook,HMMSmart_SM00384"	-	no_errors
SRCAP	10847	broad.mit.edu	36	16	30642767	30642767	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30642767	30642767	A	C	SNP	SRCAP	NM_006662	human	genbank	54_36p	1	validated	silent	c.4521	p.L1507	0.97	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SRCAP	10847	broad.mit.edu	36	16	30648363	30648363	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30648363	30648363	C	G	SNP	SRCAP	NM_006662	human	genbank	54_36p	1	validated	missense	c.6096	p.F2032L	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ZNF629	23361	broad.mit.edu	36	16	30702244	30702244	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30702244	30702244	G	T	SNP	ZNF629	NM_001080417	human	genbank	54_36p	-1	provisional	missense	c.906	p.N302K	0.89	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FBXL19	54620	broad.mit.edu	36	16	30865596	30865596	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	30865596	30865596	C	T	SNP	FBXL19	NM_001099784	human	genbank	54_36p	1	provisional	missense	c.1732	p.R578C	1	superfamily_RNI-like	"HMMPfam_zf-CXXC,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMSmart_SM00256,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367"	-	no_errors
FBXL19	54620	broad.mit.edu	36	16	30865665	30865665	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	30865665	30865665	G	A	SNP	FBXL19	NM_001099784	human	genbank	54_36p	1	provisional	missense	c.1801	p.A601T	0.4	"HMMSmart_SM00367,superfamily_RNI-like"	"HMMPfam_F-box,HMMSmart_SM00256,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00367,PatternScan_ZF_PHD_1,superfamily_RNI-like"	-	no_errors
SETD1A	9739	broad.mit.edu	36	16	30890465	30890465	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	30890465	30890465	G	T	SNP	SETD1A	NM_014712	human	genbank	54_36p	1	provisional	silent	c.3282	p.V1094	0.78	NULL	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SSF82199,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET"	-	no_errors
ZNF668	79759	broad.mit.edu	36	16	30981063	30981063	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30981063	30981063	G	T	SNP	ZNF668	NM_024706	human	genbank	54_36p	-1	provisional	nonsense	c.687	p.C229*	0.99	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF646	9726	broad.mit.edu	36	16	30996303	30996303	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	30996303	30996303	C	G	SNP	ZNF646	NM_014699	human	genbank	54_36p	1	validated	missense	c.1157	p.A386G	0.99	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PRSS36	146547	broad.mit.edu	36	16	31062194	31062194	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	31062194	31062194	C	T	SNP	PRSS36	NM_173502	human	genbank	54_36p	-1	validated	nonsense	c.1070	p.W357*	1	"HMMPfam_Trypsin,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
PRSS36	146547	broad.mit.edu	36	16	31062438	31062438	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	31062438	31062438	C	T	SNP	PRSS36	NM_173502	human	genbank	54_36p	-1	validated	silent	c.942	p.R314	0	NULL	"HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
ITGAM	3684	broad.mit.edu	36	16	31240176	31240176	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	31240176	31240176	G	T	SNP	ITGAM	NM_000632	human	genbank	54_36p	1	reviewed	silent	c.1821	p.G607	0	"superfamily_SSF69318,HMMSmart_Int_alpha"	"superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ARMC5	79798	broad.mit.edu	36	16	31383762	31383762	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	31383762	31383762	C	A	SNP	ARMC5	NM_024742	human	genbank	54_36p	1	validated	silent	c.1917	p.S639	0	NULL	"superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm"	-	no_errors
SLC5A2	6524	broad.mit.edu	36	16	31407219	31407219	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	31407219	31407219	G	A	SNP	SLC5A2	NM_003041	human	genbank	54_36p	1	validated	missense	c.1036	p.V346M	1	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
ZNF267	10308	broad.mit.edu	36	16	31834990	31834990	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	31834990	31834990	C	T	SNP	ZNF267	NM_003414	human	genbank	54_36p	1	validated	missense	c.1919	p.A640V	0.2	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
SHCBP1	79801	broad.mit.edu	36	16	45173202	45173202	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	45173202	45173202	C	G	SNP	SHCBP1	NM_024745	human	genbank	54_36p	-1	validated	silent	c.1959	p.G653	1	NULL	"superfamily_Pectin lyase-like,HMMSmart_SM00710"	-	no_errors
MYLK3	91807	broad.mit.edu	36	16	45339385	45339385	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	45339385	45339385	G	T	SNP	MYLK3	NM_182493	human	genbank	54_36p	-1	validated	silent	c.222	p.G74	0.02	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ITFG1	81533	broad.mit.edu	36	16	45850120	45850120	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	45850120	45850120	T	C	SNP	ITFG1	NM_030790	human	genbank	54_36p	-1	provisional	silent	c.1254	p.G418	0.11	NULL	"superfamily_SSF69318,HMMPfam_FG-GAP"	-	no_errors
ITFG1	81533	broad.mit.edu	36	16	46052298	46052298	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	46052298	46052298	C	A	SNP	ITFG1	NM_030790	human	genbank	54_36p	-1	provisional	missense	c.160	p.G54W	1	superfamily_SSF69318	"HMMPfam_FG-GAP,superfamily_SSF69318"	-	no_errors
PHKB	5257	broad.mit.edu	36	16	46180502	46180502	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	46180502	46180502	A	G	SNP	PHKB	NM_000293	human	genbank	54_36p	1	validated	silent	c.1056	p.P352	1	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	-	no_errors
ABCC11	85320	broad.mit.edu	36	16	46785294	46785294	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	46785294	46785294	C	T	SNP	ABCC11	NM_032583	human	genbank	54_36p	-1	reviewed	silent	c.2505	p.S835	1	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane"	"superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCC11	85320	broad.mit.edu	36	16	46787704	46787704	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	46787704	46787704	C	A	SNP	ABCC11	NM_032583	human	genbank	54_36p	-1	reviewed	nonsense	c.2344	p.E782*	0.03	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ZNF423	23090	broad.mit.edu	36	16	48229945	48229945	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	48229945	48229945	C	A	SNP	ZNF423	NM_015069	human	genbank	54_36p	-1	reviewed	missense	c.619	p.D207Y	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF423	23090	broad.mit.edu	36	16	48380912	48380912	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	48380912	48380912	G	A	SNP	ZNF423	NM_015069	human	genbank	54_36p	-1	reviewed	silent	c.63	p.S21	0.99	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
PAPD5	64282	broad.mit.edu	36	16	48819341	48819341	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	48819341	48819341	G	C	SNP	PAPD5	NM_001040284	human	genbank	54_36p	1	validated	missense	c.1219	p.E407Q	1	NULL	"superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2,superfamily_PAP/OAS1 substrate-binding domain,HMMPfam_PAP_assoc"	-	no_errors
SNX20	124460	broad.mit.edu	36	16	49268884	49268884	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	49268884	49268884	A	G	SNP	SNX20	NM_182854	human	genbank	54_36p	-1	validated	missense	c.55	p.C19R	0	NULL	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	-	no_errors
NOD2	64127	broad.mit.edu	36	16	49291059	49291059	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	49291059	49291059	G	C	SNP	NOD2	NM_022162	human	genbank	54_36p	1	reviewed	missense	c.233	p.G78A	0.85	"HMMPfam_CARD,superfamily_DEATH domain"	"HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1"	-	no_errors
SALL1	6299	broad.mit.edu	36	16	49733438	49733438	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	16	49733438	49733438	T	G	SNP	SALL1	NM_002968	human	genbank	54_36p	-1	reviewed	missense	c.196	p.T66P	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CHD9	80205	broad.mit.edu	36	16	51748190	51748190	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	51748190	51748190	C	T	SNP	CHD9	NM_025134	human	genbank	54_36p	1	validated	nonsense	c.688	p.Q230*	1	NULL	"superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_BRK"	-	no_errors
CHD9	80205	broad.mit.edu	36	16	51859340	51859340	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	51859340	51859340	G	T	SNP	CHD9	NM_025134	human	genbank	54_36p	1	validated	silent	c.4518	p.G1506	1	superfamily_SSF52540	"HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_CHROMO,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,superfamily_Chromodomain-like,superfamily_SSF52540"	-	no_errors
RBL2	5934	broad.mit.edu	36	16	52061578	52061578	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	16	52061578	52061578	C	T	SNP	RBL2	NM_005611	human	genbank	54_36p	1	validated	missense	c.2225	p.T742M	1	NULL	"HMMSmart_CYCLIN,HMMPfam_RB_A,superfamily_Cyclin_like,HMMPfam_RB_B"	-	no_errors
IRX6	79190	broad.mit.edu	36	16	53919112	53919112	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	53919112	53919112	A	T	SNP	IRX6	NM_024335	human	genbank	54_36p	1	validated	missense	c.527	p.K176M	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMSmart_SM00548"	-	no_errors
MMP2	4313	broad.mit.edu	36	16	54081185	54081185	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	54081185	54081185	G	A	SNP	MMP2	NM_004530	human	genbank	54_36p	1	reviewed	silent	c.1128	p.A376	0.7	"superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Peptidase_M10,superfamily_Kringle-like,HMMSmart_FN2,HMMPfam_fn2,PatternScan_FN2_1"	###############################################################################################################################################################################################################################################################	-	no_errors
MMP2	4313	broad.mit.edu	36	16	54083231	54083231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	16	54083231	54083231	G	C	SNP	MMP2	NM_004530	human	genbank	54_36p	1	reviewed	missense	c.1198	p.V400L	1	"HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,superfamily_SSF55486"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC6A2	6530	broad.mit.edu	36	16	54248135	54248135	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	54248135	54248135	G	T	SNP	SLC6A2	NM_001043	human	genbank	54_36p	1	validated	missense	c.28	p.V10L	1	NULL	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
SLC6A2	6530	broad.mit.edu	36	16	54293276	54293276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	54293276	54293276	A	G	SNP	SLC6A2	NM_001043	human	genbank	54_36p	1	validated	missense	c.1759	p.R587G	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
CES5A	221223	broad.mit.edu	36	16	54465369	54465369	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	54465369	54465369	A	G	SNP	CES7	NM_145024	human	genbank	54_36p	-1	validated	missense	c.155	p.V52A	0	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1"	-	no_errors
MT4	84560	broad.mit.edu	36	16	55160320	55160320	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	55160320	55160320	C	G	SNP	MT4	NM_032935	human	genbank	54_36p	1	provisional	nonsense	c.164	p.S55*	0.67	"HMMPfam_Metallothio,superfamily_Metallothionein,PatternScan_TNFR_NGFR_1"	"HMMPfam_Metallothio,superfamily_Metallothionein,PatternScan_TNFR_NGFR_1"	-	no_errors
MT1B	4490	broad.mit.edu	36	16	55243995	55243995	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	55243995	55243995	G	T	SNP	MT1B	NM_005947	human	genbank	54_36p	1	provisional	missense	c.40	p.A14S	0.99	"HMMPfam_Metallothio,superfamily_Metallothionein,PatternScan_METALLOTHIONEIN_VRT"	"HMMPfam_Metallothio,superfamily_Metallothionein,PatternScan_METALLOTHIONEIN_VRT"	-	no_errors
NLRC5	84166	broad.mit.edu	36	16	55627576	55627576	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	55627576	55627576	G	A	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	silent	c.2691	p.L897	0.84	superfamily_RNI-like	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1"	-	no_errors
NLRC5	84166	broad.mit.edu	36	16	55632971	55632971	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	55632971	55632971	G	A	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	missense	c.3013	p.G1005S	0	"HMMSmart_SM00368,superfamily_RNI-like"	"HMMPfam_LRR_1,HMMSmart_SM00368,HMMSmart_SM00367,HMMPfam_NACHT,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRC5	84166	broad.mit.edu	36	16	55658804	55658804	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	55658804	55658804	G	C	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	missense	c.4327	p.A1443P	1	NULL	"HMMPfam_LRR_1,HMMSmart_SM00368,HMMSmart_SM00367,HMMPfam_NACHT,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRC5	84166	broad.mit.edu	36	16	55669187	55669187	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	55669187	55669187	G	T	SNP	NLRC5	NM_032206	human	genbank	54_36p	1	validated	missense	c.4975	p.V1659F	0	"HMMSmart_SM00368,superfamily_RNI-like"	"HMMPfam_LRR_1,HMMSmart_SM00368,HMMSmart_SM00367,HMMPfam_NACHT,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CPNE2	221184	broad.mit.edu	36	16	55702215	55702215	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	55702215	55702215	G	C	SNP	CPNE2	NM_152727	human	genbank	54_36p	1	reviewed	missense	c.60	p.Q20H	1	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine"	-	no_errors
RSPRY1	89970	broad.mit.edu	36	16	55818841	55818841	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	55818841	55818841	T	A	SNP	RSPRY1	NM_133368	human	genbank	54_36p	1	provisional	silent	c.1248	p.P416	1	"HMMPfam_SPRY,HMMSmart_SM00449"	"superfamily_ARM repeat,HMMPfam_SPRY,HMMSmart_SM00449,superfamily_RING/U-box,HMMSmart_SM00184"	-	no_errors
CCDC102A	92922	broad.mit.edu	36	16	56117392	56117392	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	56117392	56117392	G	T	SNP	CCDC102A	NM_033212	human	genbank	54_36p	-1	provisional	missense	c.734	p.T245K	0	NULL	NULL	-	no_errors
GPR114	221188	broad.mit.edu	36	16	56156449	56156449	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	56156449	56156449	T	G	SNP	GPR114	NM_153837	human	genbank	54_36p	1	provisional	missense	c.432	p.D144E	0.73	NULL	"HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2"	-	no_errors
GPR97	222487	broad.mit.edu	36	16	56275606	56275606	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	56275606	56275606	G	T	SNP	GPR97	NM_170776	human	genbank	54_36p	1	provisional	missense	c.1143	p.K381N	1	HMMPfam_7tm_2	"PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2"	-	no_errors
GPR97	222487	broad.mit.edu	36	16	56275888	56275888	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	56275888	56275888	T	C	SNP	GPR97	NM_170776	human	genbank	54_36p	1	provisional	silent	c.1248	p.S416	0	HMMPfam_7tm_2	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
CCDC135	84229	broad.mit.edu	36	16	56319833	56319833	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	56319833	56319833	C	A	SNP	CCDC135	NM_032269	human	genbank	54_36p	1	validated	missense	c.2227	p.Q743K	1	NULL	NULL	-	no_errors
KATNB1	10300	broad.mit.edu	36	16	56344611	56344611	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	56344611	56344611	T	G	SNP	KATNB1	NM_005886	human	genbank	54_36p	1	reviewed	missense	c.977	p.L326R	0	NULL	"superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
KIFC3	3801	broad.mit.edu	36	16	56357032	56357032	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	56357032	56357032	C	T	SNP	KIFC3	NM_005550	human	genbank	54_36p	-1	validated	missense	c.1352	p.R451H	0.98	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
CNGB1	1258	broad.mit.edu	36	16	56514760	56514760	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	56514760	56514760	C	A	SNP	CNGB1	NM_001297	human	genbank	54_36p	-1	validated	nonsense	c.1561	p.E521*	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2"	-	no_errors
ZNF319	57567	broad.mit.edu	36	16	56588171	56588171	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	56588171	56588171	G	A	SNP	ZNF319	NM_020807	human	genbank	54_36p	-1	provisional	silent	c.1500	p.D500	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2"	-	no_errors
MMP15	4324	broad.mit.edu	36	16	56634731	56634731	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	16	56634731	56634731	C	T	SNP	MMP15	NM_002428	human	genbank	54_36p	1	reviewed	missense	c.1420	p.P474S	1	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
CCDC113	29070	broad.mit.edu	36	16	56841436	56841436	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	56841436	56841436	C	T	SNP	CCDC113	NM_014157	human	genbank	54_36p	1	validated	missense	c.17	p.S6F	0	NULL	NULL	-	no_errors
PRSS54	221191	broad.mit.edu	36	16	56885181	56885181	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	56885181	56885181	C	T	SNP	KLKBL4	NM_001080492	human	genbank	54_36p	-1	provisional	missense	c.41	p.R14Q	0.46	NULL	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	-	no_errors
NDRG4	65009	broad.mit.edu	36	16	57095667	57095667	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	57095667	57095667	A	T	SNP	NDRG4	NM_020465	human	genbank	54_36p	1	reviewed	missense	c.332	p.Q111L	1	"superfamily_SSF53474,HMMPfam_Ndr"	"superfamily_SSF53474,HMMPfam_Ndr"	-	no_errors
CNOT1	23019	broad.mit.edu	36	16	57133879	57133879	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	57133879	57133879	G	C	SNP	CNOT1	NM_016284	human	genbank	54_36p	-1	validated	missense	c.4529	p.T1510S	1	NULL	"HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
CNOT1	23019	broad.mit.edu	36	16	57136774	57136774	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	57136774	57136774	T	G	SNP	CNOT1	NM_016284	human	genbank	54_36p	-1	validated	missense	c.4129	p.N1377H	1	NULL	"HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
CNOT1	23019	broad.mit.edu	36	16	57146908	57146908	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	57146908	57146908	G	T	SNP	CNOT1	NM_016284	human	genbank	54_36p	-1	validated	missense	c.2639	p.T880N	1	NULL	"HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA"	-	no_errors
SLC38A7	55238	broad.mit.edu	36	16	57268820	57268820	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	57268820	57268820	G	A	SNP	SLC38A7	NM_018231	human	genbank	54_36p	-1	provisional	silent	c.621	p.S207	0.96	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC38A7	55238	broad.mit.edu	36	16	57271478	57271478	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	57271478	57271478	A	G	SNP	SLC38A7	NM_018231	human	genbank	54_36p	-1	provisional	silent	c.54	p.D18	0.99	NULL	HMMPfam_Aa_trans	-	no_errors
CDH8	1006	broad.mit.edu	36	16	60245476	60245476	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	60245476	60245476	C	T	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	missense	c.1937	p.R646Q	1	HMMPfam_Cadherin_C	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH8	1006	broad.mit.edu	36	16	60412406	60412406	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	60412406	60412406	G	C	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	missense	c.948	p.I316M	1	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
CDH11	1009	broad.mit.edu	36	16	63563441	63563441	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	63563441	63563441	G	C	SNP	CDH11	NM_001797	human	genbank	54_36p	-1	reviewed	missense	c.1418	p.P473R	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH5	1003	broad.mit.edu	36	16	64970832	64970832	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	64970832	64970832	G	A	SNP	CDH5	NM_001795	human	genbank	54_36p	1	reviewed	missense	c.91	p.A31T	0	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CMTM4	146223	broad.mit.edu	36	16	65214876	65214876	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65214876	65214876	G	C	SNP	CMTM4	NM_178818	human	genbank	54_36p	-1	reviewed	missense	c.394	p.L132V	1	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
PDP2	57546	broad.mit.edu	36	16	65476657	65476657	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	65476657	65476657	G	A	SNP	PDP2	NM_020786	human	genbank	54_36p	1	validated	silent	c.969	p.E323	1	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C"	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,PatternScan_PP2C,HMMPfam_PP2C"	-	no_errors
CDH16	1014	broad.mit.edu	36	16	65504955	65504955	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	65504955	65504955	T	A	SNP	CDH16	NM_004062	human	genbank	54_36p	-1	reviewed	missense	c.843	p.E281D	0.39	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1"	-	no_errors
CES3	23491	broad.mit.edu	36	16	65558184	65558184	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	16	65558184	65558184	A	G	SNP	CES3	NM_024922	human	genbank	54_36p	1	validated	missense	c.977	p.K326R	0.1	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_1"	-	no_errors
CES3	23491	broad.mit.edu	36	16	65558234	65558234	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	16	65558234	65558234	G	T	SNP	CES3	NM_024922	human	genbank	54_36p	1	validated	missense	c.1027	p.V343F	0.37	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_1,superfamily_alpha/beta-Hydrolases"	-	no_errors
CES4A	283848	broad.mit.edu	36	16	65587224	65587224	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	65587224	65587224	A	C	SNP	CES8	NM_173815	human	genbank	54_36p	1	validated	missense	c.251	p.Y84S	0.25	"HMMPfam_COesterase,superfamily_SSF53474"	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1"	-	no_errors
C16orf70	80262	broad.mit.edu	36	16	65717447	65717448	+	Splice_Site	INS	-	T	-	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	-	-	T	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	16	65717447	65717448	-	T	INS	C16orf70	NM_025187	human	genbank	54_36p	1	provisional	splice_site_ins	c.231+1_231+1	e3+1	1.000:1.000	-	-	-	no_errors
NOL3	8996	broad.mit.edu	36	16	65766092	65766092	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65766092	65766092	G	T	SNP	NOL3	NM_003946	human	genbank	54_36p	1	provisional	silent	c.363	p.G121	0	NULL	"HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_CARD"	-	no_errors
ELMO3	79767	broad.mit.edu	36	16	65792082	65792087	+	In_Frame_Del	DEL	AACCTC	-	AACCTC	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	AACCTC	AACCTC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	16	65792082	65792087	AACCTC	-	DEL	ELMO3	NM_024712	human	genbank	54_36p	1	reviewed	in_frame_del	c.694_699	p.NL232in_frame_del	0.965:0.845:0.345:0.166:0.181:0.193	NULL	"HMMPfam_ELMO_CED12,superfamily_SSF50729,HMMSmart_PH"	"(deletion:cds_exon[65792061,65792212])"	no_errors
ELMO3	79767	broad.mit.edu	36	16	65793434	65793434	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65793434	65793434	G	T	SNP	ELMO3	NM_024712	human	genbank	54_36p	1	reviewed	silent	c.1263	p.L421	1	HMMPfam_ELMO_CED12	"HMMPfam_ELMO_CED12,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
FHOD1	29109	broad.mit.edu	36	16	65838667	65838667	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65838667	65838667	G	C	SNP	FHOD1	NM_013241	human	genbank	54_36p	-1	reviewed	missense	c.148	p.P50A	1	NULL	"superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
FHOD1	29109	broad.mit.edu	36	16	65838802	65838802	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65838802	65838802	C	A	SNP	FHOD1	NM_013241	human	genbank	54_36p	-1	reviewed	nonsense	c.13	p.E5*	0.9	NULL	"HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd,superfamily_ARM-type_fold"	-	no_errors
PLEKHG4	25894	broad.mit.edu	36	16	65871480	65871480	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65871480	65871480	C	T	SNP	PLEKHG4	NM_015432	human	genbank	54_36p	1	reviewed	missense	c.32	p.S11F	0.26	NULL	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
PLEKHG4	25894	broad.mit.edu	36	16	65872183	65872183	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65872183	65872183	C	T	SNP	PLEKHG4	NM_015432	human	genbank	54_36p	1	reviewed	silent	c.568	p.L190	1	NULL	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
KCTD19	146212	broad.mit.edu	36	16	65893250	65893250	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65893250	65893250	T	G	SNP	KCTD19	NM_001100915	human	genbank	54_36p	-1	provisional	missense	c.720	p.E240D	0.97	superfamily_BTB/POZ_fold	"superfamily_BTB/POZ_fold,HMMPfam_K_tetra"	-	no_errors
LRRC36	55282	broad.mit.edu	36	16	65958639	65958639	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	65958639	65958639	C	T	SNP	LRRC36	NM_018296	human	genbank	54_36p	1	provisional	missense	c.973	p.P325S	0.96	NULL	"superfamily_L domain-like,HMMPfam_LRR_1"	-	no_errors
FAM65A	79567	broad.mit.edu	36	16	66133119	66133119	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66133119	66133119	C	G	SNP	FAM65A	NM_024519	human	genbank	54_36p	1	validated	missense	c.1013	p.T338S	1	NULL	superfamily_ARM-type_fold	-	no_errors
RLTPR	146206	broad.mit.edu	36	16	66239510	66239510	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66239510	66239510	G	C	SNP	RLTPR	NM_001013838	human	genbank	54_36p	1	provisional	missense	c.1126	p.G376R	0.96	superfamily_RNI-like	"superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
ACD	65057	broad.mit.edu	36	16	66251600	66251600	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	66251600	66251600	G	C	SNP	ACD	NM_001082486	human	genbank	54_36p	-1	reviewed	missense	c.283	p.L95V	0	NULL	NULL	-	no_errors
PARD6A	50855	broad.mit.edu	36	16	66253794	66253794	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	66253794	66253794	C	T	SNP	PARD6A	NM_016948	human	genbank	54_36p	1	reviewed	missense	c.784	p.R262C	1	NULL	"HMMPfam_PB1,HMMSmart_SM00666,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228"	-	no_errors
GFOD2	81577	broad.mit.edu	36	16	66267068	66267068	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66267068	66267068	C	T	SNP	GFOD2	NM_030819	human	genbank	54_36p	-1	provisional	missense	c.649	p.V217I	1	"superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain,HMMPfam_GFO_IDH_MocA_C"	"HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain,HMMPfam_GFO_IDH_MocA_C"	-	no_errors
GFOD2	81577	broad.mit.edu	36	16	66277099	66277099	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66277099	66277099	C	A	SNP	GFOD2	NM_030819	human	genbank	54_36p	-1	provisional	silent	c.21	p.V7	0.96	"HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-binding Rossmann-fold domains"	"HMMPfam_GFO_IDH_MocA,HMMPfam_GFO_IDH_MocA_C,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain"	-	no_errors
RANBP10	57610	broad.mit.edu	36	16	66322892	66322892	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66322892	66322892	G	A	SNP	RANBP10	NM_020850	human	genbank	54_36p	-1	provisional	silent	c.873	p.S291	1	HMMSmart_CTLH	"HMMPfam_SPRY,HMMSmart_SPRY,HMMSmart_LisH,HMMSmart_CTLH,HMMSmart_CRA,HMMPfam_RanBPM_CRA"	-	no_errors
RANBP10	57610	broad.mit.edu	36	16	66335794	66335794	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	66335794	66335794	C	T	SNP	RANBP10	NM_020850	human	genbank	54_36p	-1	provisional	missense	c.466	p.G156S	1	"HMMPfam_SPRY,HMMSmart_SPRY"	"HMMPfam_SPRY,HMMSmart_LisH,HMMSmart_CTLH,HMMSmart_CRA,HMMSmart_SPRY,HMMPfam_RanBPM_CRA"	-	no_errors
EDC4	23644	broad.mit.edu	36	16	66467492	66467492	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	66467492	66467492	G	A	SNP	EDC4	NM_014329	human	genbank	54_36p	1	validated	missense	c.226	p.E76K	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
EDC4	23644	broad.mit.edu	36	16	66470523	66470523	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66470523	66470523	A	G	SNP	EDC4	NM_014329	human	genbank	54_36p	1	validated	missense	c.1450	p.N484D	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
EDC4	23644	broad.mit.edu	36	16	66472526	66472526	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	66472526	66472526	C	T	SNP	EDC4	NM_014329	human	genbank	54_36p	1	validated	nonsense	c.2578	p.R860*	1	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
EDC4	23644	broad.mit.edu	36	16	66473166	66473166	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66473166	66473166	G	A	SNP	EDC4	NM_014329	human	genbank	54_36p	1	validated	missense	c.2921	p.R974H	0.99	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
LCAT	3931	broad.mit.edu	36	16	66531739	66531739	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	66531739	66531739	T	C	SNP	LCAT	NM_000229	human	genbank	54_36p	-1	reviewed	missense	c.892	p.T298A	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_LACT"	"superfamily_alpha/beta-Hydrolases,HMMPfam_LACT"	-	no_errors
SLC12A4	6560	broad.mit.edu	36	16	66541876	66541876	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	66541876	66541876	C	T	SNP	SLC12A4	NM_005072	human	genbank	54_36p	-1	validated	silent	c.1476	p.R492	0.99	HMMPfam_AA_permease	"HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1"	-	no_errors
SLC12A4	6560	broad.mit.edu	36	16	66553081	66553081	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66553081	66553081	C	T	SNP	SLC12A4	NM_005072	human	genbank	54_36p	-1	validated	silent	c.240	p.S80	1	NULL	"HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1"	-	no_errors
NFATC3	4775	broad.mit.edu	36	16	66817872	66817872	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	16	66817872	66817872	C	A	SNP	NFATC3	NM_173165	human	genbank	54_36p	1	reviewed	silent	c.3225	p.L1075	0.51	NULL	"superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
ESRP2	80004	broad.mit.edu	36	16	66822688	66822688	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	66822688	66822688	C	G	SNP	ESRP2	NM_024939	human	genbank	54_36p	-1	validated	missense	c.1605	p.E535D	1	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
SMPD3	55512	broad.mit.edu	36	16	66962930	66962930	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	66962930	66962930	T	C	SNP	SMPD3	NM_018667	human	genbank	54_36p	-1	validated	missense	c.656	p.H219R	0	NULL	"HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos"	-	no_errors
CDH3	1001	broad.mit.edu	36	16	67273825	67273825	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	67273825	67273825	C	T	SNP	CDH3	NM_001793	human	genbank	54_36p	1	reviewed	silent	c.1116	p.D372	0	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH3	1001	broad.mit.edu	36	16	67283312	67283312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	67283312	67283312	G	A	SNP	CDH3	NM_001793	human	genbank	54_36p	1	reviewed	missense	c.1984	p.A662T	0.2	NULL	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
COG8	84342	broad.mit.edu	36	16	67930898	67930898	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	67930898	67930898	T	A	SNP	COG8	NM_032382	human	genbank	54_36p	-1	reviewed	missense	c.59	p.E20V	1	NULL	HMMPfam_Dor1	-	no_errors
AARS	16	broad.mit.edu	36	16	68844146	68844146	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	68844146	68844146	G	C	SNP	AARS	NM_001605	human	genbank	54_36p	-1	reviewed	silent	c.2886	p.R962	0.98	NULL	"superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,HMMPfam_DHHA1"	-	no_errors
AARS	16	broad.mit.edu	36	16	68861635	68861635	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	68861635	68861635	C	G	SNP	AARS	NM_001605	human	genbank	54_36p	-1	reviewed	missense	c.781	p.D261H	1	"superfamily_Ala-tRNA-synth_IIc_anticod-bd,HMMPfam_tRNA-synt_2c"	"HMMPfam_DHHA1,HMMPfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA-synt_2c,superfamily_SSF55681"	-	no_errors
FUK	197258	broad.mit.edu	36	16	69070777	69070777	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	69070777	69070777	G	C	SNP	FUK	NM_145059	human	genbank	54_36p	1	reviewed	missense	c.3123	p.E1041D	0.06	"superfamily_GHMP Kinase C-terminal domain,HMMPfam_GHMP_kinases_C"	"HMMPfam_Fucokinase,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_GHMP_kinases_N,superfamily_GHMP Kinase C-terminal domain,HMMPfam_GHMP_kinases_C"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69465990	69465990	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	69465990	69465990	T	C	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.10664	p.K3555R	1	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69512218	69512218	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	69512218	69512218	G	A	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.7559	p.T2520M	0.17	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69512218	69512219	+	Missense_Mutation	DNP	GT	GT	AG	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	69512218	69512219	GT	AG	DNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.7559_7558	p.T2520L	0.166:0.168	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69512219	69512219	+	Missense_Mutation	SNP	T	T	G	rs67115747	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	69512219	69512219	T	G	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.7558	p.T2520P	0.17	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69535249	69535249	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	16	69535249	69535249	T	C	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	silent	c.6633	p.E2211	0	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69561950	69561950	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	69561950	69561950	C	G	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	missense	c.5590	p.D1864H	1	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69562149	69562149	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	16	69562149	69562149	T	C	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	silent	c.5391	p.Q1797	0.06	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
HYDIN	54768	broad.mit.edu	36	16	69583524	69583524	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	69583524	69583524	T	C	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	silent	c.3735	p.A1245	0	NULL	"superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TAT	6898	broad.mit.edu	36	16	70161677	70161677	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	70161677	70161677	A	C	SNP	TAT	NM_000353	human	genbank	54_36p	-1	reviewed	missense	c.1037	p.L346R	1	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	"HMMPfam_TAT_ubiq,superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_1"	-	no_errors
TAT	6898	broad.mit.edu	36	16	70167813	70167813	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	70167813	70167813	G	A	SNP	TAT	NM_000353	human	genbank	54_36p	-1	reviewed	missense	c.7	p.P3S	0.99	HMMPfam_TAT_ubiq	"PatternScan_AA_TRANSFER_CLASS_1,HMMPfam_Aminotran_1_2,HMMPfam_TAT_ubiq,superfamily_PLP-dependent transferases"	-	no_errors
AP1G1	164	broad.mit.edu	36	16	70365879	70365879	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	16	70365879	70365879	T	G	SNP	AP1G1	NM_001030007	human	genbank	54_36p	-1	reviewed	missense	c.319	p.I107L	1	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809"	-	no_errors
ZNF821	55565	broad.mit.edu	36	16	70451902	70451902	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	70451902	70451902	G	T	SNP	ZNF821	NM_017530	human	genbank	54_36p	-1	provisional	silent	c.633	p.P211	0.84	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2"	-	no_errors
KIAA0174	9798	broad.mit.edu	36	16	70512211	70512211	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	70512211	70512211	A	G	SNP	KIAA0174	NM_014761	human	genbank	54_36p	1	provisional	silent	c.426	p.G142	1	NULL	HMMPfam_DUF292	-	no_errors
DHODH	1723	broad.mit.edu	36	16	70603664	70603664	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	70603664	70603664	T	A	SNP	DHODH	NM_001361	human	genbank	54_36p	1	reviewed	splice_site	c.234+2	e2+2	1	-	-	-	no_errors
TXNL4B	54957	broad.mit.edu	36	16	70678142	70678142	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	70678142	70678142	C	A	SNP	TXNL4B	NM_017853	human	genbank	54_36p	-1	validated	missense	c.345	p.L115F	1	"superfamily_Thiordxn-like_fd,HMMPfam_DIM1"	"superfamily_Thiordxn-like_fd,HMMPfam_DIM1"	-	no_errors
ZFHX3	463	broad.mit.edu	36	16	71380038	71380038	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	71380038	71380038	G	T	SNP	ZFHX3	NM_006885	human	genbank	54_36p	-1	validated	missense	c.9638	p.P3213Q	0.32	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
CLEC18B	497190	broad.mit.edu	36	16	73005011	73005011	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	73005011	73005011	G	A	SNP	CLEC18B	NM_001011880	human	genbank	54_36p	-1	validated	missense	c.521	p.A174V	0	"superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP"	"superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
CLEC18B	497190	broad.mit.edu	36	16	73005038	73005038	+	Missense_Mutation	SNP	C	C	T	rs58016779	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	73005038	73005038	C	T	SNP	CLEC18B	NM_001011880	human	genbank	54_36p	-1	validated	missense	c.494	p.R165Q	0.83	"HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like"	"HMMSmart_SM00198,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SCP,superfamily_PR-1-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
WDR59	79726	broad.mit.edu	36	16	73477795	73477795	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	73477795	73477795	G	A	SNP	WDR59	NM_030581	human	genbank	54_36p	-1	validated	missense	c.2420	p.A807V	0.03	NULL	"HMMSmart_SM00320,PatternScan_EGF_LAM_1,HMMSmart_SM00591,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
ZFP1	162239	broad.mit.edu	36	16	73761359	73761359	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	73761359	73761359	A	T	SNP	ZFP1	NM_153688	human	genbank	54_36p	1	validated	missense	c.850	p.T284S	0.04	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CHST6	4166	broad.mit.edu	36	16	74070482	74070482	+	Missense_Mutation	SNP	T	T	A	rs72547540	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	74070482	74070482	T	A	SNP	CHST6	NM_021615	human	genbank	54_36p	-1	provisional	missense	c.746	p.H249L	1	"superfamily_SSF52540,HMMPfam_Sulfotransfer_1"	"superfamily_SSF52540,HMMPfam_Sulfotransfer_1"	-	no_errors
CHST5	23563	broad.mit.edu	36	16	74121154	74121154	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	74121154	74121154	G	C	SNP	CHST5	NM_024533	human	genbank	54_36p	-1	validated	silent	c.630	p.L210	0.99	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
ADAT1	23536	broad.mit.edu	36	16	74208646	74208646	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	74208646	74208646	C	A	SNP	ADAT1	NM_012091	human	genbank	54_36p	-1	reviewed	missense	c.319	p.A107S	0.88	"HMMSmart_SM00552,HMMPfam_A_deamin"	"HMMSmart_SM00552,HMMPfam_A_deamin"	-	no_errors
KARS	3735	broad.mit.edu	36	16	74220011	74220011	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	74220011	74220011	A	T	SNP	KARS	NM_005548	human	genbank	54_36p	-1	reviewed	missense	c.1652	p.I551N	1	"HMMPfam_tRNA-synt_2,superfamily_SSF55681"	"superfamily_Nucleic_acid_OB,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_SSF55681"	-	no_errors
CNTNAP4	85445	broad.mit.edu	36	16	75044030	75044030	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	75044030	75044030	G	A	SNP	CNTNAP4	NM_138994	human	genbank	54_36p	1	validated	missense	c.977	p.R326Q	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP4	85445	broad.mit.edu	36	16	75086371	75086371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	75086371	75086371	C	G	SNP	CNTNAP4	NM_138994	human	genbank	54_36p	1	validated	missense	c.1925	p.S642C	0.99	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP4	85445	broad.mit.edu	36	16	75126959	75126959	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	75126959	75126959	A	G	SNP	CNTNAP4	NM_033401	human	genbank	54_36p	1	reviewed	missense	c.2771	p.D924G	0.99	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CNTNAP4	85445	broad.mit.edu	36	16	75150013	75150013	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	75150013	75150013	G	A	SNP	CNTNAP4	NM_138994	human	genbank	54_36p	1	validated	missense	c.3640	p.A1214T	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ADAMTS18	170692	broad.mit.edu	36	16	75958960	75958971	+	In_Frame_Del	DEL	GCCGGGGTAGCC	-	GCCGGGGTAGCC	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	GCCGGGGTAGCC	GCCGGGGTAGCC	-	-	GCCGGGGTAGCC	GCCGGGGTAGCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	16	75958960	75958971	GCCGGGGTAGCC	-	DEL	ADAMTS18	NM_199355	human	genbank	54_36p	-1	reviewed	in_frame_del	c.657_646	p.GYPG216in_frame_del	0.000:0.000:0.000:0.000:0.004:0.005:0.004:0.002:0.000:0.001:0.000:0.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	"(deletion:cds_exon[75958839,75959121])"	no_errors
NUDT7	283927	broad.mit.edu	36	16	76316983	76316983	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	76316983	76316983	G	T	SNP	NUDT7	NM_001105663	human	genbank	54_36p	1	reviewed	splice_site	c.189+1	e2+1	1	-	-	-	no_errors
PKD1L2	114780	broad.mit.edu	36	16	79745444	79745444	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	79745444	79745444	C	A	SNP	PKD1L2	ENST00000299598	human	ensembl	54_36p	-1	known	missense	c.4126	p.V1376L	1	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel,PatternScan_CHANNEL_COLICIN"	-	no_errors
PKD1L2	114780	broad.mit.edu	36	16	79748026	79748026	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	79748026	79748026	C	T	SNP	PKD1L2	ENST00000299598	human	ensembl	54_36p	-1	known	missense	c.4064	p.C1355Y	0.97	NULL	"HMMPfam_GPS,HMMSmart_SM00303,PatternScan_CHANNEL_COLICIN,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,superfamily_C-type lectin-like"	-	no_errors
PKD1L2	114780	broad.mit.edu	36	16	79776673	79776673	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	79776673	79776673	C	G	SNP	PKD1L2	NM_001076780	human	genbank	54_36p	-1	reviewed	missense	c.1922	p.R641T	0	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	-	no_errors
PKD1L2	114780	broad.mit.edu	36	16	79811342	79811342	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	79811342	79811342	G	A	SNP	PKD1L2	NM_001076780	human	genbank	54_36p	-1	reviewed	silent	c.135	p.L45	0	"HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like"	"HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like"	-	no_errors
PLCG2	5336	broad.mit.edu	36	16	80529930	80529930	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	80529930	80529930	C	G	SNP	PLCG2	NM_002661	human	genbank	54_36p	1	validated	silent	c.3222	p.P1074	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
TAF1C	9013	broad.mit.edu	36	16	82770694	82770694	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	82770694	82770694	G	A	SNP	TAF1C	NM_005679	human	genbank	54_36p	-1	reviewed	missense	c.1964	p.A655V	0.43	NULL	NULL	-	no_errors
ADAD2	161931	broad.mit.edu	36	16	82786063	82786063	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	82786063	82786063	C	T	SNP	ADAD2	NM_139174	human	genbank	54_36p	1	validated	missense	c.799	p.P267S	0.15	NULL	"HMMPfam_dsrm,HMMPfam_A_deamin"	-	no_errors
KIAA1609	57707	broad.mit.edu	36	16	83077936	83077936	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	83077936	83077936	T	C	SNP	KIAA1609	NM_020947	human	genbank	54_36p	-1	validated	missense	c.760	p.I254V	0.4	HMMSmart_SM00584	"HMMSmart_SM00584,HMMPfam_TLD"	-	no_errors
KIAA1609	57707	broad.mit.edu	36	16	83080502	83080502	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	83080502	83080502	C	A	SNP	KIAA1609	NM_020947	human	genbank	54_36p	-1	validated	missense	c.412	p.V138L	0.96	NULL	"HMMPfam_TLD,HMMSmart_SM00584"	-	no_errors
FAM92B	339145	broad.mit.edu	36	16	83696482	83696482	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	83696482	83696482	C	A	SNP	FAM92B	NM_198491	human	genbank	54_36p	-1	predicted	silent	c.489	p.L163	1	HMMPfam_DUF1208	HMMPfam_DUF1208	-	no_errors
IRF8	3394	broad.mit.edu	36	16	84494231	84494231	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	84494231	84494231	C	T	SNP	IRF8	NM_002163	human	genbank	54_36p	1	reviewed	missense	c.109	p.R37W	1	"HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF"	"HMMSmart_IRF,HMMPfam_IRF,superfamily_SSF46785,PatternScan_IRF,HMMPfam_IRF-3,superfamily_SMAD_FHA"	-	no_errors
FOXF1	2294	broad.mit.edu	36	16	85104034	85104036	+	Missense_Mutation	TNP	ATC	ATC	TGT	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	ATC	ATC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	85104034	85104036	ATC	TGT	TNP	FOXF1	NM_001451	human	genbank	54_36p	1	reviewed	missense	c.982_984	p.I328C	1.000:1.000:1.000	NULL	"HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_SSF46785"	-	no_errors
FOXC2	2303	broad.mit.edu	36	16	85158901	85158901	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	85158901	85158901	C	G	SNP	FOXC2	NM_005251	human	genbank	54_36p	1	reviewed	nonsense	c.459	p.Y153*	1	"HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head"	"HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
ZCCHC14	23174	broad.mit.edu	36	16	86011726	86011726	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	86011726	86011726	T	C	SNP	ZCCHC14	NM_015144	human	genbank	54_36p	-1	validated	missense	c.527	p.D176G	1	superfamily_PX domain	"superfamily_PX domain,HMMPfam_SAM_1,superfamily_SAM/Pointed domain,HMMPfam_zf-CCHC,HMMSmart_SM00343"	-	no_errors
JPH3	57338	broad.mit.edu	36	16	86235798	86235798	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	86235798	86235798	G	T	SNP	JPH3	NM_020655	human	genbank	54_36p	1	reviewed	missense	c.816	p.E272D	1	NULL	"superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN"	-	no_errors
CA5A	763	broad.mit.edu	36	16	86482930	86482930	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	86482930	86482930	C	A	SNP	CA5A	NM_001739	human	genbank	54_36p	-1	reviewed	missense	c.750	p.E250D	0.76	"HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase"	"HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
ZFPM1	161882	broad.mit.edu	36	16	87128758	87128767	+	Frame_Shift_Del	DEL	CGCCGGCGCC	-	CGCCGGCGCC	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	CGCCGGCGCC	CGCCGGCGCC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	87128758	87128767	CGCCGGCGCC	-	DEL	ZFPM1	NM_153813	human	genbank	54_36p	1	validated	frame_shift_del	c.2891_2900	p.T964fs	0.006:0.014:0.016:0.016:0.001:0.005:0.004:0.002:0.016:0.011	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[87127057,87128888])"	no_errors
ZFPM1	161882	broad.mit.edu	36	16	87128759	87128759	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	87128759	87128759	G	C	SNP	ZFPM1	NM_153813	human	genbank	54_36p	1	validated	silent	c.2892	p.T964	0.01	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZC3H18	124245	broad.mit.edu	36	16	87193846	87193846	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	87193846	87193846	C	G	SNP	ZC3H18	NM_144604	human	genbank	54_36p	1	provisional	silent	c.1077	p.V359	1	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
MVD	4597	broad.mit.edu	36	16	87251854	87251854	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	87251854	87251854	G	A	SNP	MVD	NM_002461	human	genbank	54_36p	-1	reviewed	nonsense	c.226	p.Q76*	1	superfamily_Ribosomal_S5_D2-typ_fold	"superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_GHMP_kinases_N,superfamily_SSF55060,HMMPfam_GHMP_kinases_C"	-	no_errors
SNAI3	333929	broad.mit.edu	36	16	87275107	87275107	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	87275107	87275107	A	G	SNP	SNAI3	NM_178310	human	genbank	54_36p	-1	validated	missense	c.593	p.L198P	1	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_SSF57667"	-	no_errors
CDH15	1013	broad.mit.edu	36	16	87784315	87784315	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	87784315	87784315	G	A	SNP	CDH15	NM_004933	human	genbank	54_36p	1	reviewed	missense	c.1142	p.R381Q	0.02	"superfamily_Cadherin,HMMPfam_Cadherin"	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
ANKRD11	29123	broad.mit.edu	36	16	87874531	87874531	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	87874531	87874531	G	A	SNP	ANKRD11	NM_013275	human	genbank	54_36p	-1	validated	missense	c.5920	p.P1974S	0.57	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
ANKRD11	29123	broad.mit.edu	36	16	87875898	87875898	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	87875898	87875898	G	C	SNP	ANKRD11	NM_013275	human	genbank	54_36p	-1	validated	missense	c.4553	p.S1518C	1	superfamily_Ankyrin repeat	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD11	29123	broad.mit.edu	36	16	87877556	87877556	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	87877556	87877556	C	T	SNP	ANKRD11	NM_013275	human	genbank	54_36p	-1	validated	silent	c.2895	p.R965	0	superfamily_Ankyrin repeat	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD11	29123	broad.mit.edu	36	16	87879044	87879044	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	87879044	87879044	G	A	SNP	ANKRD11	NM_013275	human	genbank	54_36p	-1	validated	silent	c.1407	p.F469	1	superfamily_Ankyrin repeat	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD11	29123	broad.mit.edu	36	16	87885088	87885088	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	87885088	87885088	C	G	SNP	ANKRD11	NM_013275	human	genbank	54_36p	-1	validated	missense	c.231	p.K77N	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ANKRD11	29123	broad.mit.edu	36	16	87910856	87910856	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	87910856	87910856	G	C	SNP	ANKRD11	NM_013275	human	genbank	54_36p	-1	validated	missense	c.73	p.Q25E	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
SPG7	6687	broad.mit.edu	36	16	88104410	88104410	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88104410	88104410	G	A	SNP	SPG7	NM_003119	human	genbank	54_36p	1	reviewed	silent	c.195	p.L65	0	NULL	"HMMPfam_FtsH_ext,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,HMMPfam_Peptidase_M41"	-	no_errors
CPNE7	27132	broad.mit.edu	36	16	88178713	88178714	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88178713	88178714	GA	TC	DNP	CPNE7	NM_014427	human	genbank	54_36p	1	reviewed	missense	c.763_764	p.E255S	1.000:1.000	"HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2"	"HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine"	-	no_errors
CHMP1A	5119	broad.mit.edu	36	16	88239867	88239867	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88239867	88239867	C	G	SNP	CHMP1A	NM_001083314	human	genbank	54_36p	-1	validated	missense	c.679	p.A227P	0	NULL	NULL	-	no_errors
CDK10	8558	broad.mit.edu	36	16	88286410	88286410	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	16	88286410	88286410	A	G	SNP	CDK10	NM_052988	human	genbank	54_36p	1	reviewed	missense	c.470	p.N157S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
C16orf7	9605	broad.mit.edu	36	16	88303685	88303685	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88303685	88303685	C	G	SNP	C16orf7	NM_004913	human	genbank	54_36p	-1	validated	splice_site	c.1388+1	e11+1	1	-	-	-	no_errors
TCF25	22980	broad.mit.edu	36	16	88486128	88486129	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88486128	88486129	CC	TT	DNP	TCF25	NM_014972	human	genbank	54_36p	1	validated	missense	c.641_642	p.P214L	0.893:0.980	NULL	HMMPfam_DUF654	-	no_errors
TCF25	22980	broad.mit.edu	36	16	88505005	88505005	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88505005	88505005	A	C	SNP	TCF25	NM_014972	human	genbank	54_36p	1	validated	missense	c.1889	p.E630A	0.11	NULL	HMMPfam_DUF654	-	no_errors
TUBB3	10381	broad.mit.edu	36	16	88527464	88527464	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	88527464	88527464	T	C	SNP	TUBB3	NM_006086	human	genbank	54_36p	1	validated	missense	c.254	p.F85S	1	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
TUBB3	10381	broad.mit.edu	36	16	88529263	88529263	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88529263	88529263	C	T	SNP	TUBB3	NM_006086	human	genbank	54_36p	1	validated	silent	c.903	p.A301	0.06	"superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
GAS8	2622	broad.mit.edu	36	16	88631217	88631217	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	88631217	88631217	G	T	SNP	GAS8	NM_001481	human	genbank	54_36p	1	reviewed	missense	c.833	p.R278L	0.99	NULL	NULL	-	no_errors
PRDM7	11105	broad.mit.edu	36	16	88654404	88654404	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	16	88654404	88654404	T	C	SNP	PRDM7	NM_001098173	human	genbank	54_36p	-1	reviewed	missense	c.1079	p.E360G	0.17	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_KRAB,HMMPfam_SSXRD"	-	no_errors
PRDM7	11105	broad.mit.edu	36	16	88655922	88655922	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	16	88655922	88655922	C	A	SNP	PRDM7	NM_001098173	human	genbank	54_36p	-1	reviewed	missense	c.790	p.A264S	0.73	NULL	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SSXRD"	-	no_errors
C17orf97	400566	broad.mit.edu	36	17	263337	263337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	263337	263337	C	T	SNP	C17orf97	NM_001013672	human	genbank	54_36p	1	validated	silent	c.387	p.G129	0.01	NULL	NULL	-	no_errors
GEMIN4	50628	broad.mit.edu	36	17	597178	597178	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	597178	597178	G	A	SNP	GEMIN4	NM_015721	human	genbank	54_36p	-1	reviewed	silent	c.855	p.H285	0.73	NULL	NULL	-	no_errors
GEMIN4	50628	broad.mit.edu	36	17	597333	597333	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	597333	597333	C	A	SNP	GEMIN4	NM_015721	human	genbank	54_36p	-1	reviewed	missense	c.700	p.G234W	0	NULL	NULL	-	no_errors
NXN	64359	broad.mit.edu	36	17	650996	650996	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	650996	650996	G	A	SNP	NXN	NM_022463	human	genbank	54_36p	-1	validated	silent	c.1251	p.I417	0.98	superfamily_Thioredoxin-like	"superfamily_Thioredoxin-like,HMMPfam_AhpC-TSA"	-	no_errors
ABR	29	broad.mit.edu	36	17	975411	975411	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	975411	975411	C	T	SNP	ABR	NM_021962	human	genbank	54_36p	-1	reviewed	missense	c.103	p.E35K	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
YWHAE	7531	broad.mit.edu	36	17	1215037	1215037	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	1215037	1215037	G	A	SNP	YWHAE	NM_006761	human	genbank	54_36p	-1	reviewed	missense	c.130	p.L44F	1	"superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1"	"superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2"	-	no_errors
YWHAE	7531	broad.mit.edu	36	17	1250112	1250112	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	1250112	1250112	C	A	SNP	YWHAE	NM_006761	human	genbank	54_36p	-1	reviewed	nonsense	c.43	p.E15*	1	"HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein"	"HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2,superfamily_14-3-3 protein"	-	no_errors
SCARF1	8578	broad.mit.edu	36	17	1495264	1495264	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	1495264	1495264	A	T	SNP	SCARF1	NM_003693	human	genbank	54_36p	-1	reviewed	missense	c.121	p.C41S	1	NULL	"superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,superfamily_Growth factor receptor domain"	-	no_errors
RILP	83547	broad.mit.edu	36	17	1496501	1496501	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	1496501	1496501	G	A	SNP	RILP	NM_031430	human	genbank	54_36p	-1	validated	silent	c.1191	p.A397	0	NULL	"PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Jnk-SapK_ap_N"	-	no_errors
RILP	83547	broad.mit.edu	36	17	1498431	1498432	+	Missense_Mutation	DNP	CT	CT	TC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	1498431	1498432	CT	TC	DNP	RILP	NM_031430	human	genbank	54_36p	-1	validated	missense	c.784_783	p.V262M	0.999:0.984	NULL	"PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Jnk-SapK_ap_N"	-	no_errors
RILP	83547	broad.mit.edu	36	17	1498438	1498438	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	1498438	1498438	T	C	SNP	RILP	NM_031430	human	genbank	54_36p	-1	validated	silent	c.777	p.K259	1	NULL	"PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Jnk-SapK_ap_N"	-	no_errors
PRPF8	10594	broad.mit.edu	36	17	1510542	1510542	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	1510542	1510542	G	A	SNP	PRPF8	NM_006445	human	genbank	54_36p	-1	reviewed	silent	c.4719	p.L1573	1	HMMPfam_U6-snRNA_bdg	"HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_RRM_4,HMMPfam_U5_2-snRNA_bdg,HMMPfam_U6-snRNA_bdg,HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PROCT"	-	no_errors
WDR81	124997	broad.mit.edu	36	17	1578265	1578271	+	Frame_Shift_Del	DEL	GGGCTCT	-	-	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	GGGCTCT	GGGCTCT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	1578265	1578271	GGGCTCT	-	DEL	WDR81	ENST00000409644	human	ensembl	54_36p	1	known	frame_shift_del	c.3262_3268	p.G1088fs	0.895:0.909:0.901:0.997:1.000:0.998:1.000	superfamily_WD40 repeat-like	"superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40"	"(deletion:cds_exon[1575004,1578670])"	no_errors
WDR81	124997	broad.mit.edu	36	17	1582502	1582502	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	1582502	1582502	G	C	SNP	WDR81	ENST00000409644	human	ensembl	54_36p	1	known	missense	c.4291	p.V1431L	0.86	superfamily_WD40 repeat-like	"superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
METT10D	79066	broad.mit.edu	36	17	2270377	2270377	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	2270377	2270377	G	A	SNP	METT10D	NM_024086	human	genbank	54_36p	-1	validated	silent	c.1326	p.A442	0	NULL	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_10"	-	no_errors
KIAA0664	23277	broad.mit.edu	36	17	2551228	2551228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	2551228	2551228	G	C	SNP	KIAA0664	NM_015229	human	genbank	54_36p	-1	validated	missense	c.867	p.I289M	1	superfamily_SSF103107	"superfamily_SSF103107,superfamily_SSF48452"	-	no_errors
OR1D5	8386	broad.mit.edu	36	17	2912824	2912824	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	2912824	2912824	C	A	SNP	OR1D5	NM_014566	human	genbank	54_36p	-1	provisional	missense	c.828	p.M276I	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR1D2	4991	broad.mit.edu	36	17	2942515	2942515	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	2942515	2942515	A	T	SNP	OR1D2	NM_002548	human	genbank	54_36p	-1	provisional	missense	c.526	p.Y176N	0.91	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR3A2	4995	broad.mit.edu	36	17	3128274	3128274	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	3128274	3128274	G	A	SNP	OR3A2	NM_002551	human	genbank	54_36p	-1	validated	nonsense	c.706	p.R236*	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR3A1	4994	broad.mit.edu	36	17	3141985	3141985	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	3141985	3141985	C	T	SNP	OR3A1	NM_002550	human	genbank	54_36p	-1	provisional	missense	c.642	p.M214I	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
TRPV3	162514	broad.mit.edu	36	17	3374353	3374353	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	3374353	3374353	G	A	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	silent	c.1632	p.Y544	1	HMMPfam_Ion_trans	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
TRPV3	162514	broad.mit.edu	36	17	3404841	3404841	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	3404841	3404841	G	C	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	silent	c.54	p.A18	0	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ion_trans"	-	no_errors
TRPV1	7442	broad.mit.edu	36	17	3440376	3440376	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	3440376	3440376	C	T	SNP	TRPV1	ENST00000399756	human	ensembl	54_36p	-1	known	missense	c.664	p.V222M	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans"	-	no_errors
SHPK	23729	broad.mit.edu	36	17	3471376	3471376	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	3471376	3471376	T	C	SNP	SHPK	NM_013276	human	genbank	54_36p	-1	reviewed	missense	c.727	p.M243V	0	"superfamily_Actin-like ATPase domain,HMMPfam_FGGY_N"	"superfamily_Actin-like ATPase domain,HMMPfam_FGGY_N"	-	no_errors
P2RX5	5026	broad.mit.edu	36	17	3531948	3531949	+	Missense_Mutation	DNP	TC	TC	AA	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	3531948	3531949	TC	AA	DNP	P2RX5	NM_002561	human	genbank	54_36p	-1	reviewed	missense	c.1055_1054	p.E352L	0.983:0.984	HMMPfam_P2X_receptor	"HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR"	-	no_errors
ITGAE	3682	broad.mit.edu	36	17	3598010	3598010	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	3598010	3598010	G	A	SNP	ITGAE	NM_002208	human	genbank	54_36p	-1	reviewed	missense	c.2110	p.R704C	0	"HMMPfam_Integrin_alpha2,superfamily_SSF69179"	"superfamily_SSF69318,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMSmart_Int_alpha,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha"	-	no_errors
ATP2A3	489	broad.mit.edu	36	17	3778345	3778345	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	3778345	3778345	C	T	SNP	ATP2A3	NM_174953	human	genbank	54_36p	-1	reviewed	silent	c.3006	p.R1002	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ATP2A3	489	broad.mit.edu	36	17	3797746	3797746	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	3797746	3797746	G	T	SNP	ATP2A3	NM_174953	human	genbank	54_36p	-1	reviewed	silent	c.783	p.S261	1	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M"	###############################################################################################################################################################################################################################################################	-	no_errors
ZZEF1	23140	broad.mit.edu	36	17	3900829	3900829	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	3900829	3900829	C	G	SNP	ZZEF1	NM_015113	human	genbank	54_36p	-1	validated	missense	c.5858	p.G1953A	1	NULL	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,superfamily_Galactose-binding domain-like,HMMPfam_APC10,superfamily_Spermadhesin CUB domain,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
CYB5D2	124936	broad.mit.edu	36	17	4007036	4007036	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4007036	4007036	C	A	SNP	CYB5D2	NM_144611	human	genbank	54_36p	1	validated	missense	c.706	p.H236N	0.85	NULL	"PatternScan_CYTOCHROME_B5_1,superfamily_Cyt_B5,HMMPfam_Cyt-b5"	-	no_errors
ANKFY1	51479	broad.mit.edu	36	17	4023399	4023399	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4023399	4023399	T	G	SNP	ANKFY1	NM_016376	human	genbank	54_36p	-1	validated	silent	c.3016	p.R1006	0.98	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"HMMPfam_BTB,HMMSmart_BTB,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE"	-	no_errors
ANKFY1	51479	broad.mit.edu	36	17	4059983	4059983	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	4059983	4059983	T	A	SNP	ANKFY1	NM_016376	human	genbank	54_36p	-1	validated	missense	c.467	p.K156M	1	"HMMSmart_BTB,superfamily_ANK,HMMPfam_BTB"	"HMMSmart_BTB,HMMPfam_FYVE,HMMSmart_FYVE,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_FYVE_PHD_ZnF,HMMPfam_BTB"	-	no_errors
ANKFY1	51479	broad.mit.edu	36	17	4092424	4092424	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4092424	4092424	G	A	SNP	ANKFY1	NM_016376	human	genbank	54_36p	-1	validated	silent	c.79	p.L27	1	NULL	"HMMSmart_BTB,HMMPfam_FYVE,HMMSmart_FYVE,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_FYVE_PHD_ZnF,HMMPfam_BTB"	-	no_errors
SPNS3	201305	broad.mit.edu	36	17	4284121	4284122	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	4284121	4284122	GG	TT	DNP	SPNS3	NM_182538	human	genbank	54_36p	1	validated	missense	c.110_111	p.W37F	1.000:1.000	superfamily_MFS general substrate transporter	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	-	no_errors
MYBBP1A	10514	broad.mit.edu	36	17	4389768	4389768	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4389768	4389768	C	T	SNP	MYBBP1A	NM_001105538	human	genbank	54_36p	-1	validated	silent	c.3678	p.G1226	0	NULL	"superfamily_ARM-type_fold,HMMPfam_DNA_pol_phi"	-	no_errors
MYBBP1A	10514	broad.mit.edu	36	17	4400238	4400238	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	4400238	4400238	C	G	SNP	MYBBP1A	NM_001105538	human	genbank	54_36p	-1	validated	missense	c.1183	p.V395L	0.96	"HMMPfam_DNA_pol_phi,superfamily_ARM-type_fold"	"HMMPfam_DNA_pol_phi,superfamily_ARM-type_fold"	-	no_errors
MYBBP1A	10514	broad.mit.edu	36	17	4402653	4402653	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	4402653	4402653	C	A	SNP	MYBBP1A	NM_001105538	human	genbank	54_36p	-1	validated	missense	c.579	p.L193F	0.98	"HMMPfam_DNA_pol_phi,superfamily_ARM-type_fold"	"HMMPfam_DNA_pol_phi,superfamily_ARM-type_fold"	-	no_errors
ALOX15	246	broad.mit.edu	36	17	4489165	4489165	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	4489165	4489165	C	A	SNP	ALOX15	NM_001140	human	genbank	54_36p	-1	validated	missense	c.349	p.G117C	0	superfamily_Lipoxygenase	"HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2"	-	no_errors
MED11	400569	broad.mit.edu	36	17	4581930	4581930	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	4581930	4581930	C	A	SNP	MED11	NM_001001683	human	genbank	54_36p	1	provisional	missense	c.196	p.Q66K	1	HMMPfam_Med11	HMMPfam_Med11	-	no_errors
ZMYND15	84225	broad.mit.edu	36	17	4595395	4595395	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	4595395	4595395	G	C	SNP	ZMYND15	NM_032265	human	genbank	54_36p	1	provisional	missense	c.1916	p.R639T	1	NULL	"PatternScan_ZF_MYND_1,HMMPfam_zf-MYND"	-	no_errors
VMO1	284013	broad.mit.edu	36	17	4636339	4636339	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4636339	4636339	G	A	SNP	VMO1	NM_182566	human	genbank	54_36p	-1	validated	missense	c.49	p.R17W	0.01	NULL	"superfamily_VOMI,HMMPfam_VOMI"	-	no_errors
PLD2	5338	broad.mit.edu	36	17	4658070	4658070	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4658070	4658070	C	T	SNP	PLD2	NM_002663	human	genbank	54_36p	1	validated	silent	c.39	p.D13	0.21	NULL	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155"	-	no_errors
PLD2	5338	broad.mit.edu	36	17	4667228	4667229	+	Frame_Shift_Del	DEL	TG	-	TG	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	TG	TG	-	-	TG	TG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	4667228	4667229	TG	-	DEL	PLD2	NM_002663	human	genbank	54_36p	1	validated	frame_shift_del	c.1613_1614	p.M538fs	1.000:1.000	superfamily_Phospholipase D/nuclease	"superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155"	"(deletion:cds_exon[4667198,4667316])"	no_errors
MINK1	50488	broad.mit.edu	36	17	4735114	4735114	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	4735114	4735114	C	A	SNP	MINK1	NM_153827	human	genbank	54_36p	1	reviewed	missense	c.1642	p.P548T	0.67	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SPAG7	9552	broad.mit.edu	36	17	4803656	4803656	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4803656	4803656	C	T	SNP	SPAG7	NM_004890	human	genbank	54_36p	-1	validated	missense	c.580	p.V194M	1	NULL	"HMMSmart_R3H,superfamily_SSF82708,HMMPfam_R3H"	-	no_errors
ZNF232	7775	broad.mit.edu	36	17	4950517	4950517	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	4950517	4950517	C	A	SNP	ZNF232	NM_014519	human	genbank	54_36p	-1	validated	nonsense	c.661	p.E221*	0.44	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF594	84622	broad.mit.edu	36	17	5027025	5027025	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	5027025	5027025	T	A	SNP	ZNF594	NM_032530	human	genbank	54_36p	-1	validated	silent	c.1251	p.S417	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
C17orf87	388325	broad.mit.edu	36	17	5054892	5054892	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	5054892	5054892	T	G	SNP	C17orf87	NM_207103	human	genbank	54_36p	-1	predicted	silent	c.366	p.P122	0	NULL	NULL	-	no_errors
RABEP1	9135	broad.mit.edu	36	17	5205465	5205465	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	5205465	5205465	C	G	SNP	RABEP1	NM_004703	human	genbank	54_36p	1	validated	missense	c.1334	p.A445G	1	NULL	"HMMPfam_Rabaptin,HMMPfam_Rab5-bind"	-	no_errors
C1QBP	708	broad.mit.edu	36	17	5282175	5282175	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	5282175	5282175	G	C	SNP	C1QBP	NM_001212	human	genbank	54_36p	-1	reviewed	silent	c.375	p.A125	0.79	"superfamily_MAM33,HMMPfam_MAM33"	"superfamily_MAM33,HMMPfam_MAM33"	-	no_errors
DHX33	56919	broad.mit.edu	36	17	5288534	5288534	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	5288534	5288534	G	T	SNP	DHX33	NM_020162	human	genbank	54_36p	-1	reviewed	silent	c.1839	p.S613	0.94	HMMPfam_DUF1605	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
NLRP1	22861	broad.mit.edu	36	17	5403432	5403432	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	5403432	5403432	C	T	SNP	NLRP1	NM_033004	human	genbank	54_36p	-1	reviewed	silent	c.1308	p.A436	0.01	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT"	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1,HMMPfam_CARD"	-	no_errors
PITPNM3	83394	broad.mit.edu	36	17	6314378	6314378	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	6314378	6314378	T	G	SNP	PITPNM3	NM_031220	human	genbank	54_36p	-1	validated	missense	c.1699	p.T567P	1	HMMPfam_DDHD	"HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
TXNDC17	84817	broad.mit.edu	36	17	6486997	6486997	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	6486997	6486997	T	G	SNP	TXNDC17	NM_032731	human	genbank	54_36p	1	validated	silent	c.306	p.P102	1	"superfamily_Thioredoxin-like,HMMPfam_DUF953"	"superfamily_Thioredoxin-like,HMMPfam_DUF953"	-	no_errors
FBXO39	162517	broad.mit.edu	36	17	6624415	6624415	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	6624415	6624415	C	A	SNP	FBXO39	NM_153230	human	genbank	54_36p	1	validated	missense	c.504	p.N168K	1	superfamily_SSF52047	"HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047"	-	no_errors
ALOX12	239	broad.mit.edu	36	17	6854133	6854142	+	Frame_Shift_Del	DEL	CATCTCATGG	-	CATCTCATGG	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	CATCTCATGG	CATCTCATGG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	6854133	6854142	CATCTCATGG	-	DEL	ALOX12	NM_000697	human	genbank	54_36p	1	validated	frame_shift_del	c.1776_1785	p.S594fs	1.000:1.000:1.000:1.000:0.998:1.000:0.995:1.000:1.000:1.000	"superfamily_Lipoxygenase,HMMPfam_Lipoxygenase"	"HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2"	"(deletion:cds_exon[6853999,6854169])"	no_errors
DLG4	1742	broad.mit.edu	36	17	7037754	7037754	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7037754	7037754	C	T	SNP	DLG4	NM_001365	human	genbank	54_36p	-1	reviewed	missense	c.1676	p.R559Q	1	superfamily_SH3	"HMMPfam_L27_1,HMMPfam_MAGUK_N_PEST,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_PDZ_assoc,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SSF52540,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C"	-	no_errors
DLG4	1742	broad.mit.edu	36	17	7040849	7040849	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7040849	7040849	C	T	SNP	DLG4	NM_001365	human	genbank	54_36p	-1	reviewed	missense	c.1163	p.G388D	1	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ"	"HMMSmart_SH3,superfamily_SH3,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_Guanylate_kin,HMMSmart_GuKc,HMMPfam_SH3_2,HMMPfam_L27_1,HMMPfam_PDZ_assoc,HMMPfam_Gua_kin_assoc_C,HMMPfam_MAGUK_N_PEST,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540"	-	no_errors
SLC2A4	6517	broad.mit.edu	36	17	7128314	7128314	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7128314	7128314	G	C	SNP	SLC2A4	NM_001042	human	genbank	54_36p	1	reviewed	missense	c.619	p.G207R	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
NEURL4	84461	broad.mit.edu	36	17	7169370	7169370	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7169370	7169370	C	T	SNP	NEURL4	NM_032442	human	genbank	54_36p	-1	validated	missense	c.1513	p.G505S	1	NULL	"HMMPfam_Neuralized,HMMSmart_SM00588"	-	no_errors
NEURL4	84461	broad.mit.edu	36	17	7170587	7170587	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7170587	7170587	C	T	SNP	NEURL4	NM_032442	human	genbank	54_36p	-1	validated	missense	c.1097	p.R366H	1	"HMMPfam_Neuralized,HMMSmart_SM00588"	"HMMPfam_Neuralized,HMMSmart_SM00588"	-	no_errors
PLSCR3	57048	broad.mit.edu	36	17	7237407	7237407	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7237407	7237407	G	A	SNP	PLSCR3	NM_020360	human	genbank	54_36p	-1	provisional	missense	c.287	p.T96M	1	HMMPfam_Scramblase	HMMPfam_Scramblase	-	no_errors
CHRNB1	1140	broad.mit.edu	36	17	7289199	7289199	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7289199	7289199	T	C	SNP	CHRNB1	NM_000747	human	genbank	54_36p	1	reviewed	missense	c.29	p.L10P	0.98	NULL	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
CHRNB1	1140	broad.mit.edu	36	17	7299354	7299354	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7299354	7299354	C	T	SNP	CHRNB1	NM_000747	human	genbank	54_36p	1	reviewed	silent	c.1072	p.L358	0.97	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM"	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
ZBTB4	57659	broad.mit.edu	36	17	7306308	7306308	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7306308	7306308	C	T	SNP	ZBTB4	NM_020899	human	genbank	54_36p	-1	validated	missense	c.2717	p.R906Q	0.98	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZBTB4	57659	broad.mit.edu	36	17	7307108	7307108	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7307108	7307108	G	A	SNP	ZBTB4	NM_020899	human	genbank	54_36p	-1	validated	silent	c.1917	p.D639	0	NULL	"HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
EIF4A1	1973	broad.mit.edu	36	17	7420652	7420652	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7420652	7420652	G	A	SNP	EIF4A1	NM_001416	human	genbank	54_36p	1	validated	silent	c.432	p.V144	0.95	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
EIF4A1	1973	broad.mit.edu	36	17	7421681	7421681	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7421681	7421681	A	G	SNP	EIF4A1	NM_001416	human	genbank	54_36p	1	validated	missense	c.839	p.N280S	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
EFNB3	1949	broad.mit.edu	36	17	7552491	7552491	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7552491	7552491	G	C	SNP	EFNB3	NM_001406	human	genbank	54_36p	1	reviewed	silent	c.429	p.G143	1	"HMMPfam_Ephrin,superfamily_Cupredoxins"	"HMMPfam_Ephrin,superfamily_Cupredoxins,PatternScan_EPHRIN"	-	no_errors
DNAH2	146754	broad.mit.edu	36	17	7622388	7622388	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7622388	7622388	G	A	SNP	DNAH2	NM_020877	human	genbank	54_36p	1	validated	missense	c.5417	p.G1806D	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy"	-	no_errors
KDM6B	23135	broad.mit.edu	36	17	7695218	7695218	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7695218	7695218	C	T	SNP	JMJD3	NM_001080424	human	genbank	54_36p	1	provisional	silent	c.3828	p.T1276	1	NULL	"HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
ALOXE3	59344	broad.mit.edu	36	17	7959091	7959091	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7959091	7959091	G	A	SNP	ALOXE3	NM_021628	human	genbank	54_36p	-1	validated	silent	c.444	p.I148	0.99	superfamily_Lipoxygenase	"HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2"	-	no_errors
PER1	5187	broad.mit.edu	36	17	7987845	7987845	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7987845	7987845	G	A	SNP	PER1	NM_002616	human	genbank	54_36p	-1	reviewed	nonsense	c.2536	p.Q846*	0.7	NULL	"HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3"	-	no_errors
PER1	5187	broad.mit.edu	36	17	7990083	7990083	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7990083	7990083	C	A	SNP	PER1	NM_002616	human	genbank	54_36p	-1	reviewed	silent	c.2136	p.A712	0.89	NULL	"HMMSmart_SM00091,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
PER1	5187	broad.mit.edu	36	17	7992067	7992067	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	7992067	7992067	G	C	SNP	PER1	NM_002616	human	genbank	54_36p	-1	reviewed	missense	c.1207	p.P403A	1	"HMMSmart_SM00091,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)"	"HMMSmart_SM00091,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)"	-	no_errors
C17orf68	80169	broad.mit.edu	36	17	8080294	8080294	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	8080294	8080294	C	T	SNP	C17orf68	NM_025099	human	genbank	54_36p	-1	validated	missense	c.884	p.R295H	0	NULL	NULL	-	no_errors
ARHGEF15	22899	broad.mit.edu	36	17	8157081	8157081	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	8157081	8157081	C	T	SNP	ARHGEF15	NM_173728	human	genbank	54_36p	1	reviewed	missense	c.718	p.R240W	0.99	NULL	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729"	-	no_errors
WDR16	146845	broad.mit.edu	36	17	9476937	9476937	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	9476937	9476937	C	T	SNP	WDR16	NM_145054	human	genbank	54_36p	1	validated	silent	c.1182	p.N394	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
GLP2R	9340	broad.mit.edu	36	17	9701481	9701481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	9701481	9701481	C	T	SNP	GLP2R	NM_004246	human	genbank	54_36p	1	reviewed	missense	c.628	p.R210C	1	HMMPfam_7tm_2	"PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF111418,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2"	-	no_errors
GLP2R	9340	broad.mit.edu	36	17	9731991	9731991	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	9731991	9731991	G	A	SNP	GLP2R	NM_004246	human	genbank	54_36p	1	reviewed	silent	c.1302	p.L434	0.93	HMMPfam_7tm_2	"HMMPfam_7tm_2,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF111418"	-	no_errors
MYH13	8735	broad.mit.edu	36	17	10157251	10157251	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	10157251	10157251	G	T	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.4130	p.T1377N	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1"	-	no_errors
MYH13	8735	broad.mit.edu	36	17	10164398	10164398	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	10164398	10164398	C	A	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.3252	p.L1084F	0.96	"HMMPfam_Myosin_tail_1,superfamily_Prefoldin"	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH13	8735	broad.mit.edu	36	17	10168138	10168138	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	10168138	10168138	G	C	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.2860	p.L954V	1	superfamily_Prefoldin	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH13	8735	broad.mit.edu	36	17	10190737	10190737	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	10190737	10190737	C	T	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	silent	c.1248	p.G416	0.87	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH13	8735	broad.mit.edu	36	17	10204062	10204062	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	10204062	10204062	A	T	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	nonsense	c.585	p.Y195*	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH8	4626	broad.mit.edu	36	17	10243635	10243635	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	10243635	10243635	C	T	SNP	MYH8	NM_002472	human	genbank	54_36p	-1	validated	missense	c.3812	p.R1271Q	0.99	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH4	4622	broad.mit.edu	36	17	10287540	10287540	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	10287540	10287540	C	A	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.5697	p.K1899N	0.95	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH4	4622	broad.mit.edu	36	17	10292436	10292436	+	Splice_Site	SNP	A	A	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	10292436	10292436	A	T	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	splice_site	c.4656+2	e31+2	1	-	-	-	no_errors
MYH4	4622	broad.mit.edu	36	17	10301583	10301583	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	10301583	10301583	G	T	SNP	MYH4	NM_017533	human	genbank	54_36p	-1	validated	missense	c.1776	p.N592K	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH1	4619	broad.mit.edu	36	17	10336548	10336548	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	10336548	10336548	G	A	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	silent	c.5730	p.A1910	0.99	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH1	4619	broad.mit.edu	36	17	10339040	10339040	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	10339040	10339040	C	T	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.5399	p.R1800H	1	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH1	4619	broad.mit.edu	36	17	10345384	10345384	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	17	10345384	10345384	T	G	SNP	MYH1	NM_005963	human	genbank	54_36p	-1	reviewed	missense	c.3506	p.K1169T	1	HMMPfam_Myosin_tail_1	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
MYH2	4620	broad.mit.edu	36	17	10370665	10370665	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	10370665	10370665	C	T	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	missense	c.4163	p.R1388H	1	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1"	-	no_errors
MYH2	4620	broad.mit.edu	36	17	10383329	10383329	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	10383329	10383329	C	T	SNP	MYH2	NM_001100112	human	genbank	54_36p	-1	validated	missense	c.1334	p.R445H	1	"HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540"	"HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540"	-	no_errors
DNAH9	1770	broad.mit.edu	36	17	11463638	11463638	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	11463638	11463638	G	A	SNP	DNAH9	NM_001372	human	genbank	54_36p	1	reviewed	missense	c.1165	p.E389K	1	HMMPfam_DHC_N1	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2"	-	no_errors
DNAH9	1770	broad.mit.edu	36	17	11545237	11545237	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	11545237	11545237	C	A	SNP	DNAH9	NM_001372	human	genbank	54_36p	1	reviewed	missense	c.5099	p.T1700N	0.06	HMMPfam_DHC_N2	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH9	1770	broad.mit.edu	36	17	11813435	11813435	+	Missense_Mutation	SNP	C	C	T	rs9913494	"by-cluster,by-hapmap"	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	11813435	11813435	C	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	1	reviewed	missense	c.13327	p.R4443C	0	HMMPfam_Dynein_heavy	"HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYOCD	93649	broad.mit.edu	36	17	12580341	12580341	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	12580341	12580341	C	T	SNP	MYOCD	NM_153604	human	genbank	54_36p	1	provisional	missense	c.554	p.S185L	0	NULL	"HMMSmart_SM00707,superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513"	-	no_errors
HS3ST3A1	9955	broad.mit.edu	36	17	13340754	13340754	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	13340754	13340754	T	G	SNP	HS3ST3A1	NM_006042	human	genbank	54_36p	-1	reviewed	missense	c.706	p.T236P	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
TEKT3	64518	broad.mit.edu	36	17	15175140	15175140	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	15175140	15175140	T	A	SNP	TEKT3	NM_031898	human	genbank	54_36p	-1	reviewed	missense	c.488	p.E163V	1	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
TRIM16	10626	broad.mit.edu	36	17	15475745	15475745	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	15475745	15475745	C	A	SNP	TRIM16	NM_006470	human	genbank	54_36p	-1	reviewed	missense	c.1024	p.D342Y	1	NULL	"HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
TRIM16	10626	broad.mit.edu	36	17	15476640	15476640	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	15476640	15476640	G	T	SNP	TRIM16	NM_006470	human	genbank	54_36p	-1	reviewed	nonsense	c.923	p.S308*	0.98	NULL	"HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00589,HMMSmart_SM00449,superfamily_B-box zinc-binding domain"	-	no_errors
ADORA2B	136	broad.mit.edu	36	17	15819326	15819326	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	15819326	15819326	T	G	SNP	ADORA2B	NM_000676	human	genbank	54_36p	1	reviewed	missense	c.944	p.V315G	0.83	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
NCOR1	9611	broad.mit.edu	36	17	15936019	15936019	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	15936019	15936019	T	C	SNP	NCOR1	NM_006311	human	genbank	54_36p	-1	reviewed	missense	c.2899	p.M967V	0.99	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding"	-	no_errors
TRPV2	51393	broad.mit.edu	36	17	16276091	16276092	+	Frame_Shift_Ins	INS	-	A	-	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	-	-	A	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	16276091	16276092	-	A	INS	TRPV2	NM_016113	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.1741_1742	p.E582fs	0.001:0.000	HMMPfam_Ion_trans	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_Ion_trans"	-	no_errors
C17orf76	388341	broad.mit.edu	36	17	16288043	16288043	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	16288043	16288043	C	G	SNP	C17orf76	NM_207387	human	genbank	54_36p	-1	validated	missense	c.362	p.R121P	1	NULL	NULL	-	no_errors
MPRIP	23164	broad.mit.edu	36	17	17002561	17002561	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	17002561	17002561	G	T	SNP	MPRIP	NM_015134	human	genbank	54_36p	1	validated	silent	c.1566	p.P522	0.65	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
MPRIP	23164	broad.mit.edu	36	17	17002564	17002565	+	Missense_Mutation	DNP	CC	CC	GG	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	17002564	17002565	CC	GG	DNP	MPRIP	NM_015134	human	genbank	54_36p	1	validated	missense	c.1569_1570	p.DP523EA	0.679:0.666	NULL	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
MPRIP	23164	broad.mit.edu	36	17	17002754	17002786	+	In_Frame_Del	DEL	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	-	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	17002754	17002786	CGGAGGCGGGAGGAGCGCCGCAAGCGCTTCGGG	-	DEL	MPRIP	NM_015134	human	genbank	54_36p	1	validated	in_frame_del	c.1759_1791	p.RRREERRKRFG587in_frame_del	0.793:0.969:0.966:0.993:0.999:0.998:0.999:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.961:0.989:1.000:0.998:0.999:0.997:0.991:0.998:1.000:0.064:0.080:0.080:0.016:0.038:0.042:0.028	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	"(deletion:cds_exon[17002471,17003041])"	no_errors
RAI1	10743	broad.mit.edu	36	17	17641239	17641239	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	17641239	17641239	C	G	SNP	RAI1	NM_030665	human	genbank	54_36p	1	reviewed	missense	c.4252	p.L1418V	1	NULL	HMMSmart_SM00249	-	no_errors
C17orf39	79018	broad.mit.edu	36	17	17902990	17902990	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	17902990	17902990	C	T	SNP	C17orf39	NM_024052	human	genbank	54_36p	1	validated	silent	c.690	p.Y230	1	HMMPfam_Vac_ImportDeg	HMMPfam_Vac_ImportDeg	-	no_errors
C17orf39	79018	broad.mit.edu	36	17	17902999	17902999	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	17902999	17902999	G	A	SNP	C17orf39	NM_024052	human	genbank	54_36p	1	validated	missense	c.699	p.M233I	1	HMMPfam_Vac_ImportDeg	HMMPfam_Vac_ImportDeg	-	no_errors
MYO15A	51168	broad.mit.edu	36	17	17990024	17990024	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	17990024	17990024	A	T	SNP	MYO15A	NM_016239	human	genbank	54_36p	1	reviewed	silent	c.6387	p.A2129	0.97	"HMMSmart_SM00139,HMMPfam_MyTH4"	###############################################################################################################################################################################################################################################################	-	no_errors
MYO15A	51168	broad.mit.edu	36	17	17995484	17995484	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	17995484	17995484	T	A	SNP	MYO15A	NM_016239	human	genbank	54_36p	1	reviewed	missense	c.7705	p.F2569I	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MYO15A	51168	broad.mit.edu	36	17	18004036	18004036	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	18004036	18004036	A	C	SNP	MYO15A	NM_016239	human	genbank	54_36p	1	reviewed	silent	c.9366	p.T3122	0.91	"HMMPfam_MyTH4,HMMSmart_SM00139"	###############################################################################################################################################################################################################################################################	-	no_errors
ALKBH5	54890	broad.mit.edu	36	17	18028803	18028803	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	18028803	18028803	A	G	SNP	ALKBH5	NM_017758	human	genbank	54_36p	1	validated	missense	c.521	p.Q174R	1	NULL	NULL	-	no_errors
LLGL1	3996	broad.mit.edu	36	17	18079297	18079297	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	18079297	18079297	C	A	SNP	LLGL1	NM_004140	human	genbank	54_36p	1	reviewed	silent	c.1230	p.A410	1	"superfamily_WD40 repeat-like,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_LLGL,HMMPfam_WD40"	-	no_errors
FLII	2314	broad.mit.edu	36	17	18091253	18091253	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	18091253	18091253	G	A	SNP	FLII	NM_002018	human	genbank	54_36p	-1	reviewed	silent	c.2631	p.L877	1	superfamily_SSF55753	"superfamily_SSF52047,HMMPfam_LRR_1,superfamily_SSF52058,HMMSmart_LRR_TYP,superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin"	-	no_errors
TOP3A	7156	broad.mit.edu	36	17	18129514	18129514	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	18129514	18129514	C	T	SNP	TOP3A	NM_004618	human	genbank	54_36p	-1	reviewed	missense	c.1643	p.R548Q	1	"superfamily_Prokaryotic type I DNA topoisomerase,HMMPfam_Topoisom_bac,HMMSmart_SM00437"	###############################################################################################################################################################################################################################################################	-	no_errors
SHMT1	6470	broad.mit.edu	36	17	18172818	18172818	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	17	18172818	18172818	A	C	SNP	SHMT1	NM_004169	human	genbank	54_36p	-1	reviewed	missense	c.1423	p.F475V	1	superfamily_PLP-dependent transferases	"superfamily_PLP-dependent transferases,HMMPfam_SHMT,PatternScan_SHMT"	-	no_errors
LGALS9C	654346	broad.mit.edu	36	17	18327955	18327955	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	18327955	18327955	C	A	SNP	LGALS9C	NM_001040078	human	genbank	54_36p	1	validated	missense	c.81	p.D27E	0.82	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin"	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin"	-	no_errors
SLC5A10	125206	broad.mit.edu	36	17	18813408	18813408	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	18813408	18813408	C	T	SNP	SLC5A10	NM_152351	human	genbank	54_36p	1	validated	silent	c.588	p.D196	0.99	HMMPfam_SSF	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
FAM83G	644815	broad.mit.edu	36	17	18815469	18815469	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	18815469	18815469	C	T	SNP	FAM83G	NM_001039999	human	genbank	54_36p	-1	validated	silent	c.2400	p.T800	0.02	NULL	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
FAM83G	644815	broad.mit.edu	36	17	18822350	18822350	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	18822350	18822350	T	A	SNP	FAM83G	NM_001039999	human	genbank	54_36p	-1	validated	missense	c.1354	p.T452S	0.96	NULL	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
RNF112	7732	broad.mit.edu	36	17	19258701	19258701	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	19258701	19258701	G	T	SNP	RNF112	NM_007148	human	genbank	54_36p	1	reviewed	missense	c.1034	p.C345F	0.98	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	pseudogene
ALDH3A2	224	broad.mit.edu	36	17	19515740	19515740	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	19515740	19515740	C	T	SNP	ALDH3A2	NM_001031806	human	genbank	54_36p	1	reviewed	missense	c.1322	p.P441L	1	NULL	"superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
SLC47A2	146802	broad.mit.edu	36	17	19550635	19550635	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	19550635	19550635	G	T	SNP	SLC47A2	NM_152908	human	genbank	54_36p	-1	validated	silent	c.867	p.G289	0.99	NULL	HMMPfam_MatE	-	no_errors
ALDH3A1	218	broad.mit.edu	36	17	19585023	19585023	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	19585023	19585023	A	C	SNP	ALDH3A1	NM_000691	human	genbank	54_36p	-1	reviewed	missense	c.782	p.V261G	1	"superfamily_ALDH-like,HMMPfam_Aldedh"	"superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS"	-	no_errors
ULK2	9706	broad.mit.edu	36	17	19641529	19641529	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	19641529	19641529	C	A	SNP	ULK2	NM_014683	human	genbank	54_36p	-1	reviewed	missense	c.1581	p.Q527H	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
AKAP10	11216	broad.mit.edu	36	17	19801981	19801982	+	Frame_Shift_Ins	INS	-	T	-	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	19801981	19801982	-	T	INS	AKAP10	NM_007202	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.815_814	p.T272fs	0.331:0.355	"superfamily_Regulator of G-protein signaling RGS,HMMSmart_SM00315"	"superfamily_Regulator of G-protein signaling RGS,HMMSmart_SM00315,HMMPfam_RGS"	-	no_errors
MAP2K3	5606	broad.mit.edu	36	17	21144528	21144528	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	21144528	21144528	C	T	SNP	MAP2K3	NM_145109	human	genbank	54_36p	1	reviewed	missense	c.244	p.R82W	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
KSR1	8844	broad.mit.edu	36	17	22959164	22959164	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	22959164	22959164	G	T	SNP	KSR1	NM_014238	human	genbank	54_36p	1	validated	splice_site	c.1746+1	e14+1	1	-	-	-	no_errors
TMEM97	27346	broad.mit.edu	36	17	23670451	23670451	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	23670451	23670451	G	T	SNP	TMEM97	NM_014573	human	genbank	54_36p	1	validated	missense	c.59	p.S20I	1	NULL	NULL	-	no_errors
POLDIP2	26073	broad.mit.edu	36	17	23704860	23704860	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	23704860	23704860	G	C	SNP	POLDIP2	ENST00000003607	human	ensembl	54_36p	-1	known	missense	c.423	p.D141E	1	NULL	"superfamily_ApaG-like (Pfam 04379),HMMPfam_DUF525"	-	no_errors
VTN	7448	broad.mit.edu	36	17	23720126	23720126	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	23720126	23720126	G	C	SNP	VTN	NM_000638	human	genbank	54_36p	-1	reviewed	silent	c.720	p.P240	0.99	"superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX"	"HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN"	-	no_errors
ALDOC	230	broad.mit.edu	36	17	23924969	23924969	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	23924969	23924969	G	A	SNP	ALDOC	NM_005165	human	genbank	54_36p	-1	reviewed	missense	c.910	p.R304C	1	"superfamily_Aldolase,HMMPfam_Glycolytic"	"superfamily_Aldolase,HMMPfam_Glycolytic,PatternScan_ALDOLASE_CLASS_I"	-	no_errors
FLJ25006	124923	broad.mit.edu	36	17	23964425	23964425	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	23964425	23964425	T	A	SNP	FLJ25006	NM_144610	human	genbank	54_36p	-1	provisional	missense	c.390	p.K130N	0.03	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220"	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
KIAA0100	9703	broad.mit.edu	36	17	23986322	23986322	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	23986322	23986322	T	A	SNP	KIAA0100	NM_014680	human	genbank	54_36p	-1	validated	missense	c.2410	p.N804Y	1	NULL	"HMMPfam_Mqo,HMMPfam_Fmp27_GFWDK,HMMPfam_Apt1"	-	no_errors
SUPT6H	6830	broad.mit.edu	36	17	24030025	24030025	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24030025	24030025	T	G	SNP	SUPT6H	NM_003170	human	genbank	54_36p	1	validated	silent	c.1266	p.A422	1	NULL	"HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316,HMMPfam_S1,superfamily_SH2 domain,HMMSmart_SM00252"	-	no_errors
NEK8	284086	broad.mit.edu	36	17	24088800	24088837	+	Splice_Site	DEL	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	-	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	24088800	24088837	GGCCCCCATCTGTCCTGCAGGGCAGAGAAGTCCGTGGC	-	DEL	NEK8	NM_178170	human	genbank	54_36p	1	reviewed	splice_site_del	c.828-20_828-1	e6-1	0.000:0.019:0.035:0.038:0.011:0.005:0.000:0.000:0.002:0.001:0.001:0.005:0.004:0.003:0.004:0.000:0.000:0.093:0.975:1.000:1.000:0.997:0.984:0.968:1.000:1.000:1.000:1.000:1.000:0.988:0.831:0.824:0.725:0.725:0.798:0.208:0.146:0.081	-	-	"(deletion:intron[24088660,24088819], cds_exon[24088820,24088881])"	no_errors
NEK8	284086	broad.mit.edu	36	17	24089284	24089284	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24089284	24089284	A	G	SNP	NEK8	NM_178170	human	genbank	54_36p	1	reviewed	silent	c.1116	p.A372	0.08	superfamily_RCC1/BLIP-II	"PatternScan_RCC1_1,PatternScan_RCC1_2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,HMMPfam_RCC1"	-	no_errors
C17orf63	55731	broad.mit.edu	36	17	24109750	24109750	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	24109750	24109750	G	C	SNP	C17orf63	ENST00000341217	human	ensembl	54_36p	-1	known	missense	c.1351	p.P451A	1	NULL	NULL	-	no_errors
C17orf63	55731	broad.mit.edu	36	17	24110354	24110354	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24110354	24110354	G	T	SNP	C17orf63	NM_001077498	human	genbank	54_36p	-1	validated	missense	c.749	p.P250H	1	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DHRS13	147015	broad.mit.edu	36	17	24249857	24249857	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24249857	24249857	C	T	SNP	DHRS13	NM_144683	human	genbank	54_36p	-1	validated	missense	c.862	p.E288K	0	NULL	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short"	-	no_errors
SEZ6	124925	broad.mit.edu	36	17	24309175	24309175	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24309175	24309175	G	T	SNP	SEZ6	NM_178860	human	genbank	54_36p	-1	validated	missense	c.2218	p.P740T	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042"	-	no_errors
MYO18A	399687	broad.mit.edu	36	17	24461139	24461139	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	24461139	24461139	C	G	SNP	MYO18A	NM_078471	human	genbank	54_36p	-1	validated	missense	c.3194	p.R1065P	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242"	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin"	-	no_errors
MYO18A	399687	broad.mit.edu	36	17	24473350	24473350	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24473350	24473350	C	T	SNP	MYO18A	NM_078471	human	genbank	54_36p	-1	validated	silent	c.1047	p.T349	0.59	NULL	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
TAOK1	57551	broad.mit.edu	36	17	24893738	24893738	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24893738	24893738	C	T	SNP	TAOK1	NM_020791	human	genbank	54_36p	1	validated	missense	c.2578	p.R860C	1	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
GIT1	28964	broad.mit.edu	36	17	24928380	24928380	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24928380	24928380	C	T	SNP	GIT1	NM_001085454	human	genbank	54_36p	-1	validated	silent	c.1020	p.K340	1	"HMMPfam_GIT_SHD,HMMSmart_GIT"	"HMMSmart_ArfGap,superfamily_ArfGAP,HMMPfam_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_GIT_SHD,HMMSmart_GIT"	-	no_errors
ANKRD13B	124930	broad.mit.edu	36	17	24961842	24961842	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	24961842	24961842	C	G	SNP	ANKRD13B	NM_152345	human	genbank	54_36p	1	validated	missense	c.836	p.S279C	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_UIM,HMMSmart_SM00726"	-	no_errors
SSH2	85464	broad.mit.edu	36	17	25023173	25023173	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	25023173	25023173	G	C	SNP	SSH2	NM_033389	human	genbank	54_36p	-1	reviewed	missense	c.634	p.H212D	1	NULL	"HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
EFCAB5	374786	broad.mit.edu	36	17	25441694	25441694	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	25441694	25441694	C	A	SNP	EFCAB5	NM_198529	human	genbank	54_36p	1	validated	silent	c.3813	p.G1271	0.77	NULL	"superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
SLC6A4	6532	broad.mit.edu	36	17	25573043	25573043	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	25573043	25573043	A	G	SNP	SLC6A4	NM_001045	human	genbank	54_36p	-1	reviewed	silent	c.60	p.D20	0.87	NULL	"HMMPfam_5HT_transporter,HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
BLMH	642	broad.mit.edu	36	17	25636584	25636584	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	25636584	25636584	C	G	SNP	BLMH	NM_000386	human	genbank	54_36p	-1	reviewed	missense	c.593	p.S198T	1	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1_2"	"superfamily_Cysteine proteinases,HMMPfam_Peptidase_C1_2,PatternScan_THIOL_PROTEASE_CYS"	-	no_errors
GOSR1	9527	broad.mit.edu	36	17	25871136	25871136	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	25871136	25871136	C	T	SNP	GOSR1	NM_004871	human	genbank	54_36p	1	reviewed	missense	c.599	p.S200L	1	HMMPfam_V-SNARE	HMMPfam_V-SNARE	-	no_errors
C17orf42	79736	broad.mit.edu	36	17	26250693	26250693	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	26250693	26250693	C	A	SNP	C17orf42	NM_024683	human	genbank	54_36p	-1	validated	nonsense	c.703	p.G235*	0.13	superfamily_Ribonuclease H-like	superfamily_Ribonuclease H-like	-	no_errors
ADAP2	55803	broad.mit.edu	36	17	26277992	26277992	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	26277992	26277992	C	T	SNP	ADAP2	NM_018404	human	genbank	54_36p	1	validated	missense	c.247	p.L83F	0.14	"superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105"	"superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
OMG	4974	broad.mit.edu	36	17	26646718	26646718	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	26646718	26646718	G	A	SNP	OMG	NM_002544	human	genbank	54_36p	-1	validated	missense	c.758	p.P253L	1	superfamily_SSF52058	"HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP"	-	no_errors
EVI2B	2124	broad.mit.edu	36	17	26656305	26656305	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	26656305	26656305	G	A	SNP	EVI2B	NM_006495	human	genbank	54_36p	-1	validated	missense	c.449	p.S150L	0.06	NULL	NULL	-	no_errors
EVI2A	2123	broad.mit.edu	36	17	26670112	26670112	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	26670112	26670112	A	G	SNP	EVI2A	NM_001003927	human	genbank	54_36p	-1	validated	missense	c.115	p.F39L	0.11	HMMPfam_EVI2A	HMMPfam_EVI2A	-	no_errors
UTP6	55813	broad.mit.edu	36	17	27226508	27226508	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	27226508	27226508	G	C	SNP	UTP6	NM_018428	human	genbank	54_36p	-1	validated	missense	c.1163	p.A388G	0.37	superfamily_SSF48452	"HMMPfam_U3_assoc_6,HMMSmart_HAT,superfamily_SSF48452"	-	no_errors
RHOT1	55288	broad.mit.edu	36	17	27553952	27553952	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	27553952	27553952	G	C	SNP	RHOT1	NM_001033568	human	genbank	54_36p	1	validated	missense	c.1252	p.V418L	1	superfamily_SSF52540	"superfamily_SSF52540,HMMPfam_Miro,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_EF_assoc_2,HMMPfam_EF_assoc_1"	-	no_errors
RHBDL3	162494	broad.mit.edu	36	17	27656501	27656501	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	27656501	27656501	G	A	SNP	RHBDL3	NM_138328	human	genbank	54_36p	1	validated	missense	c.810	p.M270I	1	HMMPfam_Rhomboid	"superfamily_SSF47473,HMMPfam_Rhomboid"	-	no_errors
PSMD11	5717	broad.mit.edu	36	17	27815669	27815669	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	27815669	27815669	G	A	SNP	PSMD11	NM_002815	human	genbank	54_36p	1	reviewed	silent	c.408	p.L136	1	superfamily_TPR-like	"superfamily_TPR-like,HMMSmart_SM00753,HMMPfam_PCI,superfamily_Winged helix DNA-binding domain,HMMSmart_SM00088"	-	no_errors
ACCN1	40	broad.mit.edu	36	17	28377105	28377105	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	28377105	28377105	G	T	SNP	ACCN1	NM_183377	human	genbank	54_36p	-1	reviewed	missense	c.1147	p.P383T	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	no_errors
ACCN1	40	broad.mit.edu	36	17	29507517	29507517	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	29507517	29507517	C	T	SNP	ACCN1	NM_001094	human	genbank	54_36p	-1	reviewed	missense	c.148	p.V50M	1	HMMPfam_ASC	"HMMPfam_ASC,PatternScan_ASC"	-	overly_large_intron
C17orf102	400591	broad.mit.edu	36	17	29928688	29928688	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	29928688	29928688	C	T	SNP	C17orf102	NM_207454	human	genbank	54_36p	-1	validated	missense	c.475	p.A159T	0.01	NULL	NULL	-	no_errors
LIG3	3980	broad.mit.edu	36	17	30337216	30337216	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	30337216	30337216	C	T	SNP	LIG3	NM_013975	human	genbank	54_36p	1	reviewed	missense	c.644	p.A215V	0.03	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LIG3	3980	broad.mit.edu	36	17	30350453	30350453	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	17	30350453	30350453	A	G	SNP	LIG3	NM_013975	human	genbank	54_36p	1	reviewed	missense	c.2128	p.I710V	1	HMMPfam_DNA_ligase_A_C	###############################################################################################################################################################################################################################################################	-	no_errors
FNDC8	54752	broad.mit.edu	36	17	30473028	30473028	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	30473028	30473028	A	T	SNP	FNDC8	NM_017559	human	genbank	54_36p	1	validated	missense	c.203	p.N68I	0	NULL	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
NLE1	54475	broad.mit.edu	36	17	30484579	30484579	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	30484579	30484579	C	A	SNP	NLE1	NM_018096	human	genbank	54_36p	-1	validated	missense	c.1266	p.W422C	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMPfam_NLE,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1"	-	no_errors
UNC45B	146862	broad.mit.edu	36	17	30499563	30499563	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	30499563	30499563	G	A	SNP	UNC45B	NM_173167	human	genbank	54_36p	1	validated	silent	c.168	p.T56	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_ARM repeat,HMMSmart_SM00185"	-	no_errors
UNC45B	146862	broad.mit.edu	36	17	30506569	30506569	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	30506569	30506569	C	A	SNP	UNC45B	NM_173167	human	genbank	54_36p	1	validated	silent	c.781	p.R261	0.94	superfamily_ARM repeat	"HMMSmart_SM00185,HMMPfam_TPR_1,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
UNC45B	146862	broad.mit.edu	36	17	30537436	30537436	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	30537436	30537436	C	A	SNP	UNC45B	NM_173167	human	genbank	54_36p	1	validated	silent	c.2541	p.T847	0.05	superfamily_ARM repeat	"HMMSmart_SM00185,HMMPfam_TPR_1,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like"	-	no_errors
SLFN13	146857	broad.mit.edu	36	17	30795017	30795017	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	30795017	30795017	G	A	SNP	SLFN13	NM_144682	human	genbank	54_36p	-1	validated	nonsense	c.1102	p.Q368*	1	NULL	"HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
AP2B1	163	broad.mit.edu	36	17	30993078	30993078	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	30993078	30993078	G	A	SNP	AP2B1	NM_001030006	human	genbank	54_36p	1	reviewed	missense	c.1507	p.V503I	1	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	"superfamily_ARM repeat,HMMPfam_Adaptin_N,HMMSmart_SM00185,superfamily_Clathrin adaptor appendage domain,HMMSmart_SM00809,HMMPfam_Alpha_adaptinC2,superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C"	-	no_errors
AP2B1	163	broad.mit.edu	36	17	31001675	31001675	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	31001675	31001675	C	G	SNP	AP2B1	NM_001030006	human	genbank	54_36p	1	reviewed	missense	c.1550	p.P517R	1	"HMMPfam_Adaptin_N,superfamily_ARM repeat"	"HMMSmart_SM00185,HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Subdomain of clathrin and coatomer appendage domain,superfamily_Clathrin adaptor appendage domain,HMMPfam_B2-adapt-app_C,superfamily_ARM repeat"	-	no_errors
AP2B1	163	broad.mit.edu	36	17	31068453	31068453	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	31068453	31068453	G	C	SNP	AP2B1	NM_001030006	human	genbank	54_36p	1	reviewed	missense	c.2753	p.R918P	0.98	"superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C"	"HMMSmart_SM00185,HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Subdomain of clathrin and coatomer appendage domain,superfamily_Clathrin adaptor appendage domain,HMMPfam_B2-adapt-app_C,superfamily_ARM repeat"	-	no_errors
RASL10B	91608	broad.mit.edu	36	17	31092347	31092348	+	Missense_Mutation	DNP	CA	CA	GC	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	31092347	31092348	CA	GC	DNP	RASL10B	NM_033315	human	genbank	54_36p	1	validated	missense	c.522_523	p.K175Q	1.000:1.000	superfamily_SSF52540	"superfamily_SSF52540,HMMPfam_Miro"	-	no_errors
GAS2L2	246176	broad.mit.edu	36	17	31100273	31100273	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	31100273	31100273	A	T	SNP	GAS2L2	NM_139285	human	genbank	54_36p	-1	validated	missense	c.704	p.V235E	1	"HMMPfam_GAS2,HMMSmart_SM00243"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243"	-	no_errors
GAS2L2	246176	broad.mit.edu	36	17	31101239	31101239	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	31101239	31101239	C	G	SNP	GAS2L2	NM_139285	human	genbank	54_36p	-1	validated	missense	c.597	p.Q199H	0.43	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243,superfamily_Calponin-homology domain CH-domain"	-	no_errors
TAF15	8148	broad.mit.edu	36	17	31189590	31189590	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	31189590	31189590	A	T	SNP	TAF15	NM_139215	human	genbank	54_36p	1	reviewed	missense	c.833	p.D278V	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	-	no_errors
RDM1	201299	broad.mit.edu	36	17	31275861	31275861	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	31275861	31275861	C	A	SNP	RDM1	NM_145654	human	genbank	54_36p	-1	reviewed	missense	c.428	p.R143M	0.18	superfamily_dsRNA-binding domain-like	superfamily_dsRNA-binding domain-like	-	no_errors
MYO19	80179	broad.mit.edu	36	17	31933900	31933901	+	Splice_Site	DNP	CA	CA	GT	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	31933900	31933901	CA	GT	DNP	MYO19	NM_025109	human	genbank	54_36p	-1	validated	splice_site	c.1376+2_1376+1	e14+2	0.998:1.000	-	-	-	no_errors
MYO19	80179	broad.mit.edu	36	17	31933903	31933903	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	31933903	31933903	C	A	SNP	MYO19	NM_025109	human	genbank	54_36p	-1	validated	missense	c.1376	p.R459L	1	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head"	"superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ"	-	no_errors
GGNBP2	79893	broad.mit.edu	36	17	31987262	31987262	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	31987262	31987262	A	T	SNP	GGNBP2	NM_024835	human	genbank	54_36p	1	validated	missense	c.401	p.K134M	1	NULL	NULL	-	no_errors
GGNBP2	79893	broad.mit.edu	36	17	32017611	32017611	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	32017611	32017611	G	T	SNP	GGNBP2	NM_024835	human	genbank	54_36p	1	validated	silent	c.1713	p.V571	1	NULL	NULL	-	no_errors
GGNBP2	79893	broad.mit.edu	36	17	32017633	32017633	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	32017633	32017633	G	C	SNP	GGNBP2	NM_024835	human	genbank	54_36p	1	validated	missense	c.1735	p.D579H	1	NULL	NULL	-	no_errors
AATF	26574	broad.mit.edu	36	17	32384555	32384555	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	32384555	32384555	G	C	SNP	AATF	NM_012138	human	genbank	54_36p	1	reviewed	missense	c.540	p.M180I	0.91	NULL	HMMPfam_TRAUB	-	no_errors
AATF	26574	broad.mit.edu	36	17	32488042	32488042	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	32488042	32488042	C	G	SNP	AATF	NM_012138	human	genbank	54_36p	1	reviewed	missense	c.1648	p.Q550E	0.61	NULL	HMMPfam_TRAUB	-	no_errors
SYNRG	11276	broad.mit.edu	36	17	32987861	32987861	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	32987861	32987861	C	T	SNP	AP1GBP1	NM_007247	human	genbank	54_36p	-1	reviewed	missense	c.2077	p.D693N	1	NULL	"HMMSmart_SM00027,superfamily_EF-hand"	-	no_errors
HNF1B	6928	broad.mit.edu	36	17	33144652	33144662	+	Frame_Shift_Del	DEL	TGGCCTGGGTC	-	-	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	TGGCCTGGGTC	TGGCCTGGGTC	-	-	TGGCCTGGGTC	TGGCCTGGGTC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	33144652	33144662	TGGCCTGGGTC	-	DEL	HNF1B	NM_000458	human	genbank	54_36p	-1	validated	frame_shift_del	c.1178_1168	p.D390fs	1.000:1.000:1.000:1.000:0.998:0.994:1.000:1.000:1.000:1.000:1.000	HMMPfam_HNF-1B_C	"superfamily_Dimerization cofactor of HNF-1 alpha,HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_HNF-1B_C"	"(deletion:cds_exon[33144624,33144784])"	no_errors
GPR179	440435	broad.mit.edu	36	17	33737073	33737098	+	Frame_Shift_Del	DEL	CGGAATCTGCTGGGGCAGTGGTCTCC	-	-	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	CGGAATCTGCTGGGGCAGTGGTCTCC	CGGAATCTGCTGGGGCAGTGGTCTCC	-	-	CGGAATCTGCTGGGGCAGTGGTCTCC	CGGAATCTGCTGGGGCAGTGGTCTCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	33737073	33737098	CGGAATCTGCTGGGGCAGTGGTCTCC	-	DEL	GPR179	NM_001004334	human	genbank	54_36p	-1	validated	frame_shift_del	c.5905_5880	p.W1960fs	0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.016:0.025:0.307:0.334:0.305	NULL	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3"	"(deletion:cds_exon[33735874,33740940])"	no_errors
GPR179	440435	broad.mit.edu	36	17	33746454	33746454	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	33746454	33746454	C	G	SNP	GPR179	NM_001004334	human	genbank	54_36p	-1	validated	missense	c.1160	p.C387S	1	HMMPfam_7tm_3	"PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3"	-	no_errors
GPR179	440435	broad.mit.edu	36	17	33748892	33748892	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	33748892	33748892	G	C	SNP	GPR179	NM_001004334	human	genbank	54_36p	-1	validated	missense	c.837	p.I279M	1	NULL	"HMMSmart_EGF,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3"	-	no_errors
FBXL20	84961	broad.mit.edu	36	17	34674045	34674045	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	34674045	34674045	G	T	SNP	FBXL20	NM_032875	human	genbank	54_36p	-1	provisional	missense	c.1112	p.S371Y	1	"superfamily_RNI-like,HMMSmart_SM00367"	"HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00256,HMMSmart_SM00367"	-	no_errors
MED1	5469	broad.mit.edu	36	17	34819137	34819137	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	34819137	34819137	C	T	SNP	MED1	NM_004774	human	genbank	54_36p	-1	reviewed	missense	c.2863	p.G955S	1	NULL	"HMMPfam_Med1-Trap220,PatternScan_PHOSPHOPANTETHEINE,PatternScan_GHMP_KINASES_ATP"	-	no_errors
IKZF3	22806	broad.mit.edu	36	17	35175608	35175608	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	35175608	35175608	A	G	SNP	IKZF3	NM_012481	human	genbank	54_36p	-1	reviewed	silent	c.1491	p.S497	0.99	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355"	"HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2"	-	no_errors
IKZF3	22806	broad.mit.edu	36	17	35175946	35175946	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	35175946	35175946	C	G	SNP	IKZF3	NM_012481	human	genbank	54_36p	-1	reviewed	missense	c.1153	p.D385H	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZPBP2	124626	broad.mit.edu	36	17	35282836	35282836	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	35282836	35282836	G	A	SNP	ZPBP2	NM_199321	human	genbank	54_36p	1	validated	silent	c.639	p.A213	0.99	HMMPfam_Sp38	HMMPfam_Sp38	-	no_errors
CASC3	22794	broad.mit.edu	36	17	35573442	35573442	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	35573442	35573442	G	C	SNP	CASC3	NM_007359	human	genbank	54_36p	1	reviewed	missense	c.968	p.R323P	0.97	NULL	HMMPfam_Btz	-	no_errors
RAPGEFL1	51195	broad.mit.edu	36	17	35602762	35602762	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	35602762	35602762	G	A	SNP	RAPGEFL1	NM_016339	human	genbank	54_36p	1	validated	silent	c.1185	p.E395	1	"superfamily_Ras_GEF,HMMSmart_RasGEF,HMMPfam_RasGEF"	"superfamily_Ras_GEF,HMMPfam_RA,HMMSmart_RasGEF,HMMPfam_RasGEF"	-	no_errors
WIPF2	147179	broad.mit.edu	36	17	35670312	35670312	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	35670312	35670312	G	A	SNP	WIPF2	NM_133264	human	genbank	54_36p	1	validated	splice_site	c.64-1	e2-1	1	-	-	-	no_errors
TNS4	84951	broad.mit.edu	36	17	35889572	35889572	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	35889572	35889572	C	T	SNP	TNS4	NM_032865	human	genbank	54_36p	-1	validated	missense	c.1790	p.G597E	1	"superfamily_SSF50729,HMMPfam_PTB"	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMPfam_PTB"	-	no_errors
KRT24	192666	broad.mit.edu	36	17	36111046	36111046	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	36111046	36111046	T	C	SNP	KRT24	NM_019016	human	genbank	54_36p	-1	validated	missense	c.727	p.S243G	0.99	HMMPfam_Filament	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
KRT25	147183	broad.mit.edu	36	17	36160222	36160222	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36160222	36160222	C	T	SNP	KRT25	NM_181534	human	genbank	54_36p	-1	provisional	missense	c.1111	p.D371N	1	HMMPfam_Filament	"PatternScan_IF,HMMPfam_Filament"	-	no_errors
KRT28	162605	broad.mit.edu	36	17	36203673	36203673	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36203673	36203673	A	G	SNP	KRT28	NM_181535	human	genbank	54_36p	-1	validated	missense	c.1130	p.L377P	1	HMMPfam_Filament	HMMPfam_Filament	-	no_errors
KRT12	3859	broad.mit.edu	36	17	36273065	36273065	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	36273065	36273065	C	G	SNP	KRT12	NM_000223	human	genbank	54_36p	-1	reviewed	silent	c.1152	p.L384	0.02	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT12	3859	broad.mit.edu	36	17	36276897	36276897	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36276897	36276897	G	C	SNP	KRT12	NM_000223	human	genbank	54_36p	-1	reviewed	missense	c.68	p.S23W	0.89	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRTAP9-3	83900	broad.mit.edu	36	17	36642507	36642507	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36642507	36642507	T	C	SNP	KRTAP9-3	NM_031962	human	genbank	54_36p	1	reviewed	silent	c.228	p.C76	0.01	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRTAP9-8	83901	broad.mit.edu	36	17	36648176	36648176	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36648176	36648176	G	C	SNP	KRTAP9-8	NM_031963	human	genbank	54_36p	1	reviewed	missense	c.347	p.C116S	0.01	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRT33A	3883	broad.mit.edu	36	17	36756723	36756724	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	36756723	36756724	CC	AG	DNP	KRT33A	NM_004138	human	genbank	54_36p	-1	reviewed	missense	c.775_774	p.V259L	1.000:1.000	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT31	3881	broad.mit.edu	36	17	36807218	36807218	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	36807218	36807218	C	G	SNP	KRT31	NM_002277	human	genbank	54_36p	-1	reviewed	missense	c.100	p.A34P	1	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT32	3882	broad.mit.edu	36	17	36869938	36869938	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	36869938	36869938	G	T	SNP	KRT32	NM_002278	human	genbank	54_36p	-1	reviewed	missense	c.1297	p.P433T	0.74	NULL	"HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT35	3886	broad.mit.edu	36	17	36886883	36886883	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36886883	36886883	T	G	SNP	KRT35	NM_002280	human	genbank	54_36p	-1	reviewed	missense	c.1319	p.N440T	0.19	NULL	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
KRT13	3860	broad.mit.edu	36	17	36911044	36911044	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36911044	36911044	C	T	SNP	KRT13	NM_153490	human	genbank	54_36p	-1	reviewed	missense	c.1367	p.R456H	0.04	NULL	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
KRT13	3860	broad.mit.edu	36	17	36912364	36912364	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	36912364	36912364	C	G	SNP	KRT13	NM_153490	human	genbank	54_36p	-1	reviewed	silent	c.1032	p.G344	0.03	HMMPfam_Filament	"superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF"	-	no_errors
KRT17	3872	broad.mit.edu	36	17	37033993	37033993	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	37033993	37033993	G	A	SNP	KRT17	NM_000422	human	genbank	54_36p	-1	reviewed	silent	c.295	p.L99	1	HMMPfam_Filament	"HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF"	-	no_errors
HAP1	9001	broad.mit.edu	36	17	37137979	37137979	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	37137979	37137979	C	G	SNP	HAP1	NM_177977	human	genbank	54_36p	-1	reviewed	missense	c.1200	p.M400I	0.81	HMMPfam_HAP1_N	HMMPfam_HAP1_N	-	no_errors
JUP	3728	broad.mit.edu	36	17	37172789	37172789	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	37172789	37172789	T	C	SNP	JUP	NM_002230	human	genbank	54_36p	-1	reviewed	missense	c.1469	p.N490S	1	"superfamily_ARM-type_fold,HMMSmart_ARM"	"superfamily_ARM-type_fold,HMMSmart_ARM,HMMPfam_HEAT,HMMPfam_Arm"	-	no_errors
FKBP10	60681	broad.mit.edu	36	17	37230150	37230150	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	37230150	37230150	T	G	SNP	FKBP10	NM_021939	human	genbank	54_36p	1	validated	silent	c.1167	p.S389	0	superfamily_SSF54534	"superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,PatternScan_ER_TARGET"	-	no_errors
KLHL11	55175	broad.mit.edu	36	17	37263588	37263588	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	37263588	37263588	C	T	SNP	KLHL11	NM_018143	human	genbank	54_36p	-1	provisional	missense	c.2057	p.R686K	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
ACLY	47	broad.mit.edu	36	17	37278556	37278556	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	37278556	37278556	G	C	SNP	ACLY	NM_001096	human	genbank	54_36p	-1	reviewed	missense	c.3143	p.A1048G	1	superfamily_Citrate_synthase_core	"superfamily_SSF56059,superfamily_CoA_ligase,PatternScan_SUCCINYL_COA_LIG_3,superfamily_NAD(P)-bd,HMMPfam_CoA_binding,superfamily_Citrate_synthase_core,HMMPfam_Ligase_CoA,PatternScan_SUCCINYL_COA_LIG_1,PatternScan_SUCCINYL_COA_LIG_2"	-	no_errors
ACLY	47	broad.mit.edu	36	17	37323652	37323652	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	37323652	37323652	T	A	SNP	ACLY	NM_001096	human	genbank	54_36p	-1	reviewed	missense	c.1	p.M1L	1	NULL	"HMMPfam_CoA_binding,PatternScan_SUCCINYL_COA_LIG_1,HMMPfam_Ligase_CoA,superfamily_NAD(P)-bd,superfamily_CoA_ligase,superfamily_Citrate_synthase_core,PatternScan_SUCCINYL_COA_LIG_2,PatternScan_SUCCINYL_COA_LIG_3,superfamily_SSF56059"	-	no_errors
DNAJC7	7266	broad.mit.edu	36	17	37395049	37395049	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	37395049	37395049	G	C	SNP	DNAJC7	NM_003315	human	genbank	54_36p	-1	provisional	missense	c.622	p.L208V	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ"	-	no_errors
KAT2A	2648	broad.mit.edu	36	17	37519630	37519652	+	Splice_Site	DEL	TGGAGAGAAGAGCCGGGCTGGGG	-	TGGAGAGAAGAGCCGGGCTGGGG	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	TGGAGAGAAGAGCCGGGCTGGGG	TGGAGAGAAGAGCCGGGCTGGGG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	37519630	37519652	TGGAGAGAAGAGCCGGGCTGGGG	-	DEL	KAT2A	NM_021078	human	genbank	54_36p	-1	validated	splice_site_del	c.2236-24_2236-2	e17-2	1.000:0.527:0.449:0.436:0.442:0.410:0.386:0.011:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.003:0.000:0.000:0.000:0.001:0.001:0.003	-	-	"(deletion:intron[37519629,37519762])"	no_errors
STAT5B	6777	broad.mit.edu	36	17	37613252	37613252	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	37613252	37613252	G	C	SNP	STAT5B	NM_012448	human	genbank	54_36p	-1	reviewed	missense	c.1927	p.L643V	1	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	"superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	-	no_errors
STAT5B	6777	broad.mit.edu	36	17	37615794	37615794	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	17	37615794	37615794	G	C	SNP	STAT5B	NM_012448	human	genbank	54_36p	-1	reviewed	missense	c.1827	p.N609K	1	"HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550"	"HMMPfam_SH2,HMMSmart_SH2,superfamily_P53_like_DNA_bnd,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_SSF55550"	-	no_errors
STAT5B	6777	broad.mit.edu	36	17	37633087	37633087	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	37633087	37633087	C	A	SNP	STAT5B	NM_012448	human	genbank	54_36p	-1	reviewed	missense	c.271	p.A91S	1	"HMMPfam_STAT_int,superfamily_STAT"	"HMMPfam_SH2,HMMSmart_SH2,superfamily_P53_like_DNA_bnd,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_SSF55550"	-	no_errors
STAT5A	6776	broad.mit.edu	36	17	37713789	37713789	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	37713789	37713789	C	G	SNP	STAT5A	NM_003152	human	genbank	54_36p	1	reviewed	missense	c.1974	p.D658E	1	"HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550"	"HMMPfam_SH2,HMMSmart_SH2,superfamily_P53_like_DNA_bnd,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_SSF55550"	-	no_errors
STAT3	6774	broad.mit.edu	36	17	37752228	37752228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	37752228	37752228	G	C	SNP	STAT3	NM_139276	human	genbank	54_36p	-1	reviewed	missense	c.158	p.A53G	1	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int"	"superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2"	-	no_errors
PTRF	284119	broad.mit.edu	36	17	37828412	37828412	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	37828412	37828412	T	A	SNP	PTRF	NM_012232	human	genbank	54_36p	-1	validated	missense	c.230	p.E77V	1	NULL	NULL	-	no_errors
NAGLU	4669	broad.mit.edu	36	17	37949014	37949014	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	37949014	37949014	G	A	SNP	NAGLU	NM_000263	human	genbank	54_36p	1	reviewed	silent	c.1464	p.P488	0	HMMPfam_NAGLU	HMMPfam_NAGLU	-	no_errors
FAM134C	162427	broad.mit.edu	36	17	37990759	37990759	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	37990759	37990759	C	T	SNP	FAM134C	NM_178126	human	genbank	54_36p	-1	validated	missense	c.637	p.D213N	1	NULL	NULL	-	no_errors
TUBG2	27175	broad.mit.edu	36	17	38071305	38071305	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38071305	38071305	G	C	SNP	TUBG2	NM_016437	human	genbank	54_36p	1	validated	silent	c.777	p.S259	0.63	"superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	"superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	-	no_errors
PLEKHH3	79990	broad.mit.edu	36	17	38079926	38079926	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38079926	38079926	G	C	SNP	PLEKHH3	NM_024927	human	genbank	54_36p	-1	validated	missense	c.190	p.P64A	0.06	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_GLYCOSYL_HYDROL_F11_2"	-	no_errors
CCR10	2826	broad.mit.edu	36	17	38086132	38086132	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	38086132	38086132	T	C	SNP	CCR10	NM_016602	human	genbank	54_36p	-1	validated	silent	c.54	p.E18	0	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CNTNAP1	8506	broad.mit.edu	36	17	38093414	38093414	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	38093414	38093414	C	G	SNP	CNTNAP1	NM_003632	human	genbank	54_36p	1	reviewed	missense	c.1195	p.L399V	0.93	"superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP1	8506	broad.mit.edu	36	17	38094471	38094471	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	38094471	38094471	T	C	SNP	CNTNAP1	NM_003632	human	genbank	54_36p	1	reviewed	missense	c.1508	p.F503S	1	"HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
CNTNAP1	8506	broad.mit.edu	36	17	38096348	38096378	+	Frame_Shift_Del	DEL	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	-	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	-	-	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	38096348	38096378	ATGGAGCGGCCATTCCTGGGGGCTATCCAGT	-	DEL	CNTNAP1	NM_003632	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1921_1951	p.M641fs	0.998:1.000:1.000:1.000:1.000:0.908:0.998:1.000:1.000:1.000:1.000:0.970:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.995:0.841:0.814:0.760:0.322:0.393:0.992:0.998:1.000:1.000:1.000:1.000	"superfamily_ConA_like_lec_gl,HMMSmart_FBG"	###############################################################################################################################################################################################################################################################	"(deletion:cds_exon[38096283,38096486])"	no_errors
EZH1	2145	broad.mit.edu	36	17	38123578	38123578	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38123578	38123578	T	C	SNP	EZH1	NM_001991	human	genbank	54_36p	-1	validated	missense	c.965	p.K322R	1	NULL	"HMMSmart_SM00717,PatternScan_AP_NUCLEASE_F2_1,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317"	-	no_errors
EZH1	2145	broad.mit.edu	36	17	38125994	38125995	+	Splice_Site	DNP	CT	CT	AC	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	38125994	38125995	CT	AC	DNP	EZH1	NM_001991	human	genbank	54_36p	-1	validated	splice_site	c.488-2_488-1	e5-1	1.000:1.000	-	-	-	no_errors
WNK4	65266	broad.mit.edu	36	17	38201262	38201262	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	38201262	38201262	C	G	SNP	WNK4	NM_032387	human	genbank	54_36p	1	validated	missense	c.3116	p.S1039C	0.02	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
WNK4	65266	broad.mit.edu	36	17	38202086	38202086	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	38202086	38202086	C	G	SNP	WNK4	NM_032387	human	genbank	54_36p	1	validated	missense	c.3693	p.S1231R	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	-	no_errors
CNTD1	124817	broad.mit.edu	36	17	38204617	38204617	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	38204617	38204617	C	T	SNP	CNTD1	NM_173478	human	genbank	54_36p	1	validated	silent	c.6	p.D2	0.05	NULL	superfamily_Cyclin-like	-	no_errors
IFI35	3430	broad.mit.edu	36	17	38419154	38419154	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38419154	38419154	G	T	SNP	IFI35	NM_005533	human	genbank	54_36p	1	validated	missense	c.517	p.V173F	0.02	NULL	"HMMPfam_IFP_35_N,HMMPfam_NID"	-	no_errors
ARL4D	379	broad.mit.edu	36	17	38832676	38832676	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38832676	38832676	C	G	SNP	ARL4D	NM_001661	human	genbank	54_36p	1	reviewed	missense	c.50	p.P17R	1	"HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf"	"HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175"	-	no_errors
DHX8	1659	broad.mit.edu	36	17	38925628	38925628	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38925628	38925628	G	A	SNP	DHX8	NM_004941	human	genbank	54_36p	1	reviewed	missense	c.557	p.R186Q	1	NULL	"superfamily_Nucleic_acid_OB,HMMPfam_S1,HMMSmart_S1,HMMSmart_DEXDc,superfamily_SSF52540,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605"	-	no_errors
ETV4	2118	broad.mit.edu	36	17	38962065	38962065	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	38962065	38962065	C	G	SNP	ETV4	NM_001079675	human	genbank	54_36p	-1	validated	silent	c.1194	p.S398	0.76	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2"	"HMMPfam_ETS_PEA3_N,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
MPP3	4356	broad.mit.edu	36	17	39264780	39264780	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39264780	39264780	G	C	SNP	MPP3	NM_001932	human	genbank	54_36p	-1	reviewed	missense	c.21	p.D7E	0.99	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
MPP2	4355	broad.mit.edu	36	17	39312259	39312259	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39312259	39312259	G	C	SNP	MPP2	NM_005374	human	genbank	54_36p	-1	reviewed	nonsense	c.1392	p.Y464*	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,HMMPfam_Guanylate_kin"	###############################################################################################################################################################################################################################################################	-	no_errors
PYY	5697	broad.mit.edu	36	17	39386006	39386007	+	Missense_Mutation	DNP	GA	GA	TG	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39386006	39386007	GA	TG	DNP	PYY	NM_004160	human	genbank	54_36p	-1	validated	missense	c.266_265	p.S89Q	0.023:0.031	NULL	"HMMPfam_Hormone_3,HMMSmart_SM00309,PatternScan_PANCREATIC_HORMONE_1"	-	no_errors
G6PC3	92579	broad.mit.edu	36	17	39508217	39508217	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39508217	39508217	C	T	SNP	G6PC3	NM_138387	human	genbank	54_36p	1	validated	silent	c.549	p.G183	1	"superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2"	"superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2"	-	no_errors
G6PC3	92579	broad.mit.edu	36	17	39508223	39508223	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39508223	39508223	G	A	SNP	G6PC3	NM_138387	human	genbank	54_36p	1	validated	silent	c.555	p.L185	0.99	"HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase"	"HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase"	-	no_errors
HDAC5	10014	broad.mit.edu	36	17	39520443	39520443	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	39520443	39520443	G	C	SNP	HDAC5	NM_001015053	human	genbank	54_36p	-1	reviewed	missense	c.1750	p.Q584E	1	NULL	"superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl"	-	no_errors
ATXN7L3	56970	broad.mit.edu	36	17	39627420	39627420	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39627420	39627420	A	C	SNP	ATXN7L3	NM_020218	human	genbank	54_36p	-1	validated	missense	c.907	p.W303G	0.82	NULL	"HMMPfam_Sgf11,HMMPfam_SCA7"	-	no_errors
UBTF	7343	broad.mit.edu	36	17	39643263	39643263	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39643263	39643263	A	G	SNP	UBTF	NM_014233	human	genbank	54_36p	-1	validated	silent	c.1464	p.A488	0.19	"superfamily_HMG-box,HMMSmart_SM00398"	"superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
RUNDC3A	10900	broad.mit.edu	36	17	39746378	39746378	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39746378	39746378	C	T	SNP	RUNDC3A	NM_006695	human	genbank	54_36p	1	validated	missense	c.439	p.R147C	1	"HMMPfam_RUN,HMMSmart_RUN"	"HMMPfam_RUN,HMMSmart_RUN"	-	no_errors
FZD2	2535	broad.mit.edu	36	17	39991386	39991386	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	39991386	39991386	A	G	SNP	FZD2	NM_001466	human	genbank	54_36p	1	reviewed	silent	c.804	p.V268	1	HMMPfam_Frizzled	"HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI,HMMPfam_Frizzled"	-	no_errors
FZD2	2535	broad.mit.edu	36	17	39992097	39992097	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	39992097	39992097	G	C	SNP	FZD2	NM_001466	human	genbank	54_36p	1	reviewed	silent	c.1515	p.P505	0.99	HMMPfam_Frizzled	"superfamily_Frizzled_Cys-rich,HMMPfam_Frizzled,HMMPfam_Fz,HMMSmart_FRI"	-	no_errors
C17orf104	284071	broad.mit.edu	36	17	40100926	40100926	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	40100926	40100926	T	C	SNP	uc002igz.2	ENST00000409122	human	ensembl	54_36p	1	known	silent	c.2121	p.Y707	1	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
C17orf104	284071	broad.mit.edu	36	17	40100965	40100965	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	40100965	40100965	T	C	SNP	uc002igz.2	ENST00000409122	human	ensembl	54_36p	1	known	silent	c.2160	p.P720	1	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
EFTUD2	9343	broad.mit.edu	36	17	40292851	40292851	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	40292851	40292851	A	T	SNP	EFTUD2	NM_004247	human	genbank	54_36p	-1	validated	missense	c.1808	p.M603K	1	superfamily_EFG_III_V	"PatternScan_EFACTOR_GTP,superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_EFG_III_V,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_EFG_IV,HMMPfam_EFG_C"	-	no_errors
KIF18B	146909	broad.mit.edu	36	17	40365571	40365571	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	40365571	40365571	C	T	SNP	KIF18B	NM_001080443	human	genbank	54_36p	-1	provisional	missense	c.1234	p.E412K	0	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
HEXIM1	10614	broad.mit.edu	36	17	40582389	40582389	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	40582389	40582389	A	T	SNP	HEXIM1	NM_006460	human	genbank	54_36p	1	reviewed	missense	c.49	p.N17Y	1	NULL	NULL	-	no_errors
C17orf46	124783	broad.mit.edu	36	17	40689046	40689046	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	40689046	40689046	C	G	SNP	C17orf46	NM_152343	human	genbank	54_36p	-1	validated	missense	c.286	p.E96Q	0	NULL	NULL	-	no_errors
MAP3K14	9020	broad.mit.edu	36	17	40704246	40704248	+	Missense_Mutation	TNP	GGT	GGT	TTG	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	GGT	GGT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	40704246	40704248	GGT	TTG	TNP	MAP3K14	ENST00000344686	human	ensembl	54_36p	-1	known	missense	c.1778_1780	p.HP593PT	1.000:1.000:1.000	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
MAPT	4137	broad.mit.edu	36	17	41457217	41457217	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	41457217	41457217	C	T	SNP	MAPT	NM_016835	human	genbank	54_36p	1	reviewed	silent	c.2112	p.D704	1	NULL	"HMMPfam_Tubulin-binding,PatternScan_TAU_MAP"	-	no_errors
NSF	4905	broad.mit.edu	36	17	42184080	42184080	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	42184080	42184080	G	A	SNP	NSF	NM_006178	human	genbank	54_36p	1	validated	silent	c.2088	p.Q696	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_ADC-like,HMMPfam_CDC48_N,superfamily_Cdc48 domain 2-like,HMMPfam_CDC48_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
GOSR2	9570	broad.mit.edu	36	17	42367462	42367462	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	42367462	42367462	C	T	SNP	GOSR2	NM_054022	human	genbank	54_36p	1	reviewed	silent	c.405	p.N135	1	HMMPfam_V-SNARE	HMMPfam_V-SNARE	-	no_errors
MYL4	4635	broad.mit.edu	36	17	42652308	42652308	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	42652308	42652308	C	A	SNP	MYL4	NM_001002841	human	genbank	54_36p	1	reviewed	missense	c.203	p.T68N	0.1	superfamily_SSF47473	superfamily_SSF47473	-	no_errors
MYL4	4635	broad.mit.edu	36	17	42654065	42654065	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	42654065	42654065	T	C	SNP	MYL4	NM_001002841	human	genbank	54_36p	1	reviewed	missense	c.332	p.L111P	1	superfamily_SSF47473	superfamily_SSF47473	-	no_errors
MYL4	4635	broad.mit.edu	36	17	42654107	42654107	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	42654107	42654107	G	A	SNP	MYL4	NM_001002841	human	genbank	54_36p	1	reviewed	missense	c.374	p.R125H	1	superfamily_SSF47473	superfamily_SSF47473	-	no_errors
ITGB3	3690	broad.mit.edu	36	17	42724773	42724773	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	42724773	42724773	C	T	SNP	ITGB3	NM_000212	human	genbank	54_36p	1	reviewed	silent	c.1530	p.D510	0.8	superfamily_EGF/Laminin	###############################################################################################################################################################################################################################################################	-	no_errors
MRPL10	124995	broad.mit.edu	36	17	43259416	43259416	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	43259416	43259416	A	G	SNP	MRPL10	NM_145255	human	genbank	54_36p	-1	reviewed	missense	c.376	p.F126L	1	NULL	NULL	-	no_errors
HOXB4	3214	broad.mit.edu	36	17	44010278	44010278	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	44010278	44010278	C	T	SNP	HOXB4	NM_024015	human	genbank	54_36p	-1	reviewed	missense	c.403	p.A135T	0.99	NULL	"PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ZNF652	22834	broad.mit.edu	36	17	44749439	44749439	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	44749439	44749439	A	T	SNP	ZNF652	NM_014897	human	genbank	54_36p	-1	validated	missense	c.648	p.S216R	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NGFR	4804	broad.mit.edu	36	17	44945149	44945149	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	44945149	44945149	G	T	SNP	NGFR	NM_002507	human	genbank	54_36p	1	reviewed	missense	c.1063	p.A355S	0.32	"superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	"PatternScan_LIPASE_SER,superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death"	-	no_errors
FAM117A	81558	broad.mit.edu	36	17	45149912	45149912	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	45149912	45149912	C	A	SNP	FAM117A	NM_030802	human	genbank	54_36p	-1	validated	missense	c.872	p.G291V	0	NULL	NULL	-	no_errors
ITGA3	3675	broad.mit.edu	36	17	45504480	45504480	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	45504480	45504480	C	G	SNP	ITGA3	NM_005501	human	genbank	54_36p	1	reviewed	missense	c.1091	p.P364R	1	superfamily_Integrin alpha N-terminal domain	"superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains"	-	no_errors
SGCA	6442	broad.mit.edu	36	17	45600918	45600918	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	45600918	45600918	G	C	SNP	SGCA	NM_000023	human	genbank	54_36p	1	reviewed	missense	c.570	p.E190D	1	HMMPfam_Sarcoglycan_2	"HMMPfam_Sarcoglycan_2,HMMSmart_SM00736,superfamily_Cadherin-like"	-	no_errors
SGCA	6442	broad.mit.edu	36	17	45602634	45602634	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	45602634	45602634	C	A	SNP	SGCA	NM_000023	human	genbank	54_36p	1	reviewed	silent	c.879	p.T293	0.98	HMMPfam_Sarcoglycan_2	"HMMSmart_SM00736,HMMPfam_Sarcoglycan_2,superfamily_Cadherin-like"	-	no_errors
COL1A1	1277	broad.mit.edu	36	17	45627423	45627423	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	45627423	45627423	C	G	SNP	COL1A1	NM_000088	human	genbank	54_36p	-1	reviewed	missense	c.1337	p.G446A	1	HMMPfam_Collagen	"HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
CHAD	1101	broad.mit.edu	36	17	45898070	45898070	+	Missense_Mutation	SNP	C	C	T	rs35218093	"by-cluster,by-frequency"	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	45898070	45898070	C	T	SNP	CHAD	NM_001267	human	genbank	54_36p	-1	reviewed	missense	c.935	p.R312Q	1	"superfamily_L domain-like,HMMSmart_SM00082"	"HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT"	-	no_errors
RSAD1	55316	broad.mit.edu	36	17	45915745	45915745	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	45915745	45915745	G	A	SNP	RSAD1	NM_018346	human	genbank	54_36p	1	provisional	missense	c.950	p.R317Q	0.99	"superfamily_SSF102114,HMMPfam_HemN_C"	"superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM,HMMPfam_HemN_C"	-	no_errors
MYCBPAP	84073	broad.mit.edu	36	17	45951042	45951042	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	45951042	45951042	C	T	SNP	MYCBPAP	NM_032133	human	genbank	54_36p	1	validated	missense	c.628	p.R210C	0.78	NULL	NULL	-	no_errors
MYCBPAP	84073	broad.mit.edu	36	17	45951058	45951058	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	45951058	45951058	G	C	SNP	MYCBPAP	NM_032133	human	genbank	54_36p	1	validated	missense	c.644	p.R215P	1	NULL	NULL	-	no_errors
MYCBPAP	84073	broad.mit.edu	36	17	45951439	45951439	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	45951439	45951439	G	C	SNP	MYCBPAP	NM_032133	human	genbank	54_36p	1	validated	missense	c.776	p.R259P	0	NULL	NULL	-	no_errors
MYCBPAP	84073	broad.mit.edu	36	17	45958430	45958431	+	Missense_Mutation	DNP	CC	CC	AT	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	45958430	45958431	CC	AT	DNP	MYCBPAP	NM_032133	human	genbank	54_36p	1	validated	missense	c.1990_1991	p.P664I	0.000:0.000	NULL	NULL	-	no_errors
EPN3	55040	broad.mit.edu	36	17	45973163	45973163	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	45973163	45973163	G	A	SNP	EPN3	NM_017957	human	genbank	54_36p	1	validated	silent	c.990	p.P330	0	NULL	"superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273,HMMPfam_UIM,HMMSmart_SM00726"	-	no_errors
CACNA1G	8913	broad.mit.edu	36	17	46042290	46042290	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	46042290	46042290	C	G	SNP	CACNA1G	NM_018896	human	genbank	54_36p	1	validated	missense	c.4754	p.A1585G	1	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
WFIKKN2	124857	broad.mit.edu	36	17	46272336	46272336	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	46272336	46272336	C	T	SNP	WFIKKN2	NM_175575	human	genbank	54_36p	1	reviewed	missense	c.688	p.L230F	1	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	###############################################################################################################################################################################################################################################################	-	no_errors
WFIKKN2	124857	broad.mit.edu	36	17	46272992	46272992	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	46272992	46272992	C	A	SNP	WFIKKN2	NM_175575	human	genbank	54_36p	1	reviewed	nonsense	c.1344	p.C448*	1	superfamily_TIMP_like	###############################################################################################################################################################################################################################################################	-	no_errors
WFIKKN2	124857	broad.mit.edu	36	17	46273082	46273083	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	46273082	46273083	GG	TT	DNP	WFIKKN2	NM_175575	human	genbank	54_36p	1	reviewed	missense	c.1434_1435	p.G479C	0.747:0.998	superfamily_TIMP_like	###############################################################################################################################################################################################################################################################	-	no_errors
SPAG9	9043	broad.mit.edu	36	17	46552871	46552871	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	46552871	46552871	T	G	SNP	SPAG9	NM_003971	human	genbank	54_36p	-1	reviewed	missense	c.146	p.E49A	1	HMMPfam_Jnk-SapK_ap_N	"HMMPfam_Jnk-SapK_ap_N,superfamily_WD40_like"	-	no_errors
NME1-NME2	654364	broad.mit.edu	36	17	46600614	46600614	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	46600614	46600614	C	A	SNP	NME1-NME2	NM_001018136	human	genbank	54_36p	1	validated	missense	c.484	p.H162N	1	"superfamily_NDK,HMMSmart_NDK,HMMPfam_NDK"	"superfamily_NDK,HMMSmart_NDK,HMMPfam_NDK,PatternScan_NDP_KINASES"	-	no_errors
MBTD1	54799	broad.mit.edu	36	17	46625164	46625164	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	46625164	46625164	T	C	SNP	MBTD1	NM_017643	human	genbank	54_36p	-1	validated	silent	c.1176	p.Q392	0.99	"HMMSmart_MBT,superfamily_SSF63748,HMMPfam_MBT"	"HMMSmart_MBT,superfamily_SSF63748,HMMPfam_MBT"	-	no_errors
MBTD1	54799	broad.mit.edu	36	17	46627708	46627708	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	46627708	46627708	C	A	SNP	MBTD1	NM_017643	human	genbank	54_36p	-1	validated	missense	c.746	p.G249V	1	"HMMPfam_MBT,HMMSmart_MBT,superfamily_SSF63748"	"HMMPfam_MBT,HMMSmart_MBT,superfamily_SSF63748"	-	no_errors
CA10	56934	broad.mit.edu	36	17	47180163	47180163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	47180163	47180163	C	T	SNP	CA10	NM_001082533	human	genbank	54_36p	-1	reviewed	missense	c.294	p.M98I	1	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	-	no_errors
KIF2B	84643	broad.mit.edu	36	17	49256683	49256683	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	49256683	49256683	G	C	SNP	KIF2B	NM_032559	human	genbank	54_36p	1	validated	missense	c.1290	p.Q430H	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
COX11	1353	broad.mit.edu	36	17	50400990	50400990	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	50400990	50400990	C	A	SNP	COX11	NM_004375	human	genbank	54_36p	-1	reviewed	missense	c.17	p.R6L	0	NULL	"HMMPfam_CtaG_Cox11,superfamily_Ctag/Cox11 (Pfam 04442)"	-	no_errors
STXBP4	252983	broad.mit.edu	36	17	50418585	50418585	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	50418585	50418585	T	G	SNP	STXBP4	NM_178509	human	genbank	54_36p	1	validated	missense	c.6	p.N2K	0.67	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1"	-	no_errors
NOG	9241	broad.mit.edu	36	17	52027168	52027168	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	52027168	52027168	C	T	SNP	NOG	NM_005450	human	genbank	54_36p	1	reviewed	silent	c.585	p.S195	1	"HMMPfam_Noggin,superfamily_SSF57501"	"HMMPfam_Noggin,superfamily_SSF57501"	-	no_errors
DGKE	8526	broad.mit.edu	36	17	52267221	52267221	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	52267221	52267221	G	C	SNP	DGKE	NM_003647	human	genbank	54_36p	1	reviewed	silent	c.66	p.L22	1	NULL	"superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_4FE4S_FER_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
DGKE	8526	broad.mit.edu	36	17	52267336	52267336	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	52267336	52267336	G	T	SNP	DGKE	NM_003647	human	genbank	54_36p	1	reviewed	missense	c.181	p.G61W	1	"HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain"	"HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_4FE4S_FER_1,superfamily_Cysteine-rich domain"	-	no_errors
COIL	8161	broad.mit.edu	36	17	52374485	52374485	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	52374485	52374485	T	A	SNP	COIL	NM_004645	human	genbank	54_36p	-1	reviewed	splice_site	c.1559-2	e6-2	1	-	-	-	no_errors
MSI2	124540	broad.mit.edu	36	17	52689853	52689853	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	52689853	52689853	T	G	SNP	MSI2	NM_138962	human	genbank	54_36p	1	reviewed	missense	c.131	p.F44C	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
SRSF1	6426	broad.mit.edu	36	17	53438293	53438293	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	53438293	53438293	G	T	SNP	SFRS1	NM_006924	human	genbank	54_36p	-1	reviewed	missense	c.420	p.H140Q	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
SRSF1	6426	broad.mit.edu	36	17	53439347	53439347	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	17	53439347	53439347	G	A	SNP	SFRS1	NM_006924	human	genbank	54_36p	-1	reviewed	missense	c.151	p.R51C	1	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
OR4D2	124538	broad.mit.edu	36	17	53602640	53602640	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	53602640	53602640	G	A	SNP	OR4D2	NM_001004707	human	genbank	54_36p	1	provisional	missense	c.625	p.V209I	0.2	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
EPX	8288	broad.mit.edu	36	17	53636619	53636619	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	53636619	53636619	C	A	SNP	EPX	NM_000502	human	genbank	54_36p	1	validated	missense	c.1984	p.Q662K	1	"superfamily_Peroxidase_super,HMMPfam_An_peroxidase"	"PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1"	-	no_errors
MKS1	54903	broad.mit.edu	36	17	53638477	53638477	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	53638477	53638477	G	A	SNP	MKS1	NM_017777	human	genbank	54_36p	-1	validated	nonsense	c.1642	p.Q548*	1	NULL	HMMPfam_B9	-	no_errors
LPO	4025	broad.mit.edu	36	17	53684649	53684649	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	53684649	53684649	G	T	SNP	LPO	NM_006151	human	genbank	54_36p	1	validated	missense	c.888	p.Q296H	1	"superfamily_Peroxidase_super,HMMPfam_An_peroxidase"	"PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase"	-	no_errors
BZRAP1	9256	broad.mit.edu	36	17	53737957	53737957	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	53737957	53737957	G	C	SNP	BZRAP1	NM_004758	human	genbank	54_36p	-1	validated	silent	c.5304	p.S1768	0.93	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	"superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	-	no_errors
RNF43	54894	broad.mit.edu	36	17	53795899	53795899	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	53795899	53795899	G	C	SNP	RNF43	NM_017763	human	genbank	54_36p	-1	validated	missense	c.437	p.A146G	0.96	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RNF43	54894	broad.mit.edu	36	17	53803294	53803294	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	53803294	53803294	G	T	SNP	RNF43	NM_017763	human	genbank	54_36p	-1	validated	missense	c.352	p.P118T	1	NULL	"HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
HSF5	124535	broad.mit.edu	36	17	53912476	53912476	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	53912476	53912476	G	A	SNP	HSF5	NM_001080439	human	genbank	54_36p	-1	provisional	silent	c.702	p.S234	1	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00415,HMMPfam_HSF_DNA-bind"	-	no_errors
HSF5	124535	broad.mit.edu	36	17	53912582	53912582	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	53912582	53912582	C	G	SNP	HSF5	NM_001080439	human	genbank	54_36p	-1	provisional	missense	c.596	p.S199T	1	HMMPfam_HSF_DNA-bind	"HMMPfam_HSF_DNA-bind,HMMSmart_SM00415,superfamily_Winged helix DNA-binding domain"	-	no_errors
SEPT4	5414	broad.mit.edu	36	17	53959317	53959317	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	53959317	53959317	T	G	SNP	SEPT4	NM_004574	human	genbank	54_36p	-1	reviewed	missense	c.82	p.T28P	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin"	-	no_errors
TEX14	56155	broad.mit.edu	36	17	54016917	54016917	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	54016917	54016917	A	G	SNP	TEX14	NM_198393	human	genbank	54_36p	-1	reviewed	silent	c.3114	p.H1038	0.29	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr"	-	no_errors
PPM1E	22843	broad.mit.edu	36	17	54188467	54188468	+	In_Frame_Ins	INS	-	CGAACC	-	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	54188467	54188468	-	CGAACC	INS	PPM1E	NM_014906	human	genbank	54_36p	1	reviewed	in_frame_ins	c.110_111	p.41in_frame_insPE	0.984:0.986	NULL	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C"	-	no_errors
PPM1E	22843	broad.mit.edu	36	17	54412474	54412474	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	54412474	54412474	G	T	SNP	PPM1E	NM_014906	human	genbank	54_36p	1	reviewed	missense	c.1568	p.G523V	1	NULL	"superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C"	-	no_errors
PRR11	55771	broad.mit.edu	36	17	54617249	54617265	+	Frame_Shift_Del	DEL	TCCTGGAACTTCAATTT	-	TCCTGGAACTTCAATTT	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	TCCTGGAACTTCAATTT	TCCTGGAACTTCAATTT	-	-	TCCTGGAACTTCAATTT	TCCTGGAACTTCAATTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	54617249	54617265	TCCTGGAACTTCAATTT	-	DEL	PRR11	NM_018304	human	genbank	54_36p	1	validated	frame_shift_del	c.181_197	p.W62fs	0.045:0.116:0.184:0.203:0.191:0.124:0.037:0.019:0.001:0.002:0.002:0.001:0.001:0.000:0.001:0.004:0.007	NULL	NULL	"(deletion:cds_exon[54617197,54617347])"	no_errors
PRR11	55771	broad.mit.edu	36	17	54633755	54633755	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	54633755	54633755	G	A	SNP	PRR11	NM_018304	human	genbank	54_36p	1	validated	missense	c.1064	p.S355N	1	NULL	NULL	-	no_errors
CLTC	1213	broad.mit.edu	36	17	55115150	55115150	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	17	55115150	55115150	A	G	SNP	CLTC	NM_004859	human	genbank	54_36p	1	reviewed	missense	c.3866	p.Y1289C	1	"superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299"	"superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin_propel,HMMPfam_Clathrin-link,superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_Protein prenylyltransferase"	-	no_errors
TUBD1	51174	broad.mit.edu	36	17	55292559	55292559	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	55292559	55292559	A	G	SNP	TUBD1	NM_016261	human	genbank	54_36p	-1	validated	missense	c.1268	p.I423T	1	superfamily_Tubulin C-terminal domain-like	"superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like"	-	no_errors
HEATR6	63897	broad.mit.edu	36	17	55475917	55475917	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	55475917	55475917	G	C	SNP	HEATR6	NM_022070	human	genbank	54_36p	-1	validated	nonsense	c.3335	p.S1112*	0.99	NULL	"superfamily_ARM-type_fold,HMMPfam_HEAT"	-	no_errors
HEATR6	63897	broad.mit.edu	36	17	55504362	55504362	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	55504362	55504362	C	A	SNP	HEATR6	NM_022070	human	genbank	54_36p	-1	validated	missense	c.695	p.C232F	1	NULL	"HMMPfam_HEAT,superfamily_ARM-type_fold"	-	no_errors
CA4	762	broad.mit.edu	36	17	55591421	55591421	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	55591421	55591421	A	G	SNP	CA4	NM_000717	human	genbank	54_36p	1	reviewed	missense	c.793	p.S265G	0.01	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase"	"superfamily_Carbonic anhydrase,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1"	-	no_errors
TBX2	6909	broad.mit.edu	36	17	56840454	56840454	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	56840454	56840454	C	T	SNP	TBX2	NM_005994	human	genbank	54_36p	1	validated	silent	c.1914	p.A638	0.2	NULL	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
TBX4	9496	broad.mit.edu	36	17	56889756	56889756	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	56889756	56889756	T	C	SNP	TBX4	NM_018488	human	genbank	54_36p	1	reviewed	missense	c.263	p.I88T	1	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1"	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
NACA2	342538	broad.mit.edu	36	17	57023095	57023095	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	57023095	57023095	G	A	SNP	NACA2	NM_199290	human	genbank	54_36p	-1	validated	missense	c.229	p.R77W	1	HMMPfam_NAC	"HMMPfam_NAC,HMMPfam_UBA"	-	no_errors
BRIP1	83990	broad.mit.edu	36	17	57208692	57208692	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	57208692	57208692	G	A	SNP	BRIP1	NM_032043	human	genbank	54_36p	-1	reviewed	missense	c.1949	p.T650I	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMSmart_SM00487,HMMPfam_DEAD_2,HMMSmart_SM00491"	-	no_errors
MED13	9969	broad.mit.edu	36	17	57414887	57414887	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	57414887	57414887	C	G	SNP	MED13	NM_005121	human	genbank	54_36p	-1	reviewed	missense	c.3259	p.D1087H	1	NULL	HMMPfam_TRAP_240kDa	-	no_errors
TANC2	26115	broad.mit.edu	36	17	58849500	58849500	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	58849500	58849500	G	A	SNP	TANC2	NM_025185	human	genbank	54_36p	1	validated	missense	c.4016	p.R1339K	1	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like"	"HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ACE	1636	broad.mit.edu	36	17	58914644	58914644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	58914644	58914644	T	A	SNP	ACE	NM_000789	human	genbank	54_36p	1	reviewed	missense	c.1579	p.Y527N	0.99	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
KCNH6	81033	broad.mit.edu	36	17	58955404	58955404	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	58955404	58955404	G	T	SNP	KCNH6	NM_030779	human	genbank	54_36p	1	reviewed	silent	c.249	p.A83	0.96	"superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS"	"superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding"	-	no_errors
KCNH6	81033	broad.mit.edu	36	17	58976853	58976853	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	58976853	58976853	C	T	SNP	KCNH6	NM_030779	human	genbank	54_36p	1	reviewed	missense	c.2843	p.P948L	0.22	NULL	"HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels"	-	no_errors
STRADA	92335	broad.mit.edu	36	17	59138401	59138401	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	59138401	59138401	G	C	SNP	STRADA	NM_001003787	human	genbank	54_36p	-1	validated	missense	c.691	p.H231D	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	-	no_errors
DDX42	11325	broad.mit.edu	36	17	59239996	59239996	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	59239996	59239996	G	A	SNP	DDX42	NM_007372	human	genbank	54_36p	1	reviewed	missense	c.1108	p.A370T	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
PSMC5	5705	broad.mit.edu	36	17	59262161	59262161	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	59262161	59262161	C	T	SNP	PSMC5	NM_002805	human	genbank	54_36p	1	reviewed	missense	c.713	p.A238V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA"	-	no_errors
GH2	2689	broad.mit.edu	36	17	59311533	59311533	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	59311533	59311533	G	T	SNP	GH2	NM_022558	human	genbank	54_36p	-1	reviewed	missense	c.530	p.T177K	0.95	NULL	"HMMPfam_Hormone_1,superfamily_4_helix_cytokine,PatternScan_SOMATOTROPIN_1"	-	no_errors
SCN4A	6329	broad.mit.edu	36	17	59378218	59378218	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	59378218	59378218	C	T	SNP	SCN4A	NM_000334	human	genbank	54_36p	-1	reviewed	silent	c.3360	p.S1120	0.61	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMPfam_IQ"	-	no_errors
ICAM2	3384	broad.mit.edu	36	17	59436313	59436313	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	59436313	59436313	G	A	SNP	ICAM2	NM_000873	human	genbank	54_36p	-1	reviewed	nonsense	c.214	p.Q72*	0	"HMMPfam_ICAM_N,superfamily_Immunoglobulin"	"HMMPfam_ICAM_N,superfamily_Immunoglobulin"	-	no_errors
DDX5	1655	broad.mit.edu	36	17	59929591	59929591	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	59929591	59929591	T	C	SNP	DDX5	NM_004396	human	genbank	54_36p	-1	validated	missense	c.898	p.I300V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_P68HR"	-	no_errors
RGS9	8787	broad.mit.edu	36	17	60651880	60651880	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	60651880	60651880	G	A	SNP	RGS9	NM_003835	human	genbank	54_36p	1	validated	missense	c.1706	p.R569Q	0	NULL	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
HELZ	9931	broad.mit.edu	36	17	62629903	62629903	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	62629903	62629903	C	A	SNP	HELZ	NM_014877	human	genbank	54_36p	-1	validated	missense	c.366	p.E122D	1	NULL	"superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF52540,HMMPfam_PAM2"	-	no_errors
BPTF	2186	broad.mit.edu	36	17	63331364	63331364	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	63331364	63331364	G	C	SNP	BPTF	NM_182641	human	genbank	54_36p	1	reviewed	missense	c.2758	p.V920L	1	NULL	"HMMPfam_FYDLN_acid,HMMPfam_DDT,HMMSmart_DDT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_EGF_2,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
BPTF	2186	broad.mit.edu	36	17	63338212	63338212	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	63338212	63338212	G	T	SNP	BPTF	NM_182641	human	genbank	54_36p	1	reviewed	missense	c.3750	p.K1250N	0.01	NULL	"HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,HMMPfam_DDT,superfamily_FYVE_PHD_ZnF,HMMPfam_FYDLN_acid,PatternScan_EGF_2,PatternScan_BROMODOMAIN_1,HMMSmart_DDT,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
ABCA8	10351	broad.mit.edu	36	17	64383005	64383005	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64383005	64383005	C	T	SNP	ABCA8	NM_007168	human	genbank	54_36p	-1	reviewed	missense	c.4502	p.R1501Q	0.99	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	-	no_errors
ABCA8	10351	broad.mit.edu	36	17	64413882	64413882	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64413882	64413882	C	A	SNP	ABCA8	NM_007168	human	genbank	54_36p	-1	reviewed	missense	c.2176	p.D726Y	0.94	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA9	10350	broad.mit.edu	36	17	64526224	64526224	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	64526224	64526224	G	A	SNP	ABCA9	NM_080283	human	genbank	54_36p	-1	reviewed	missense	c.2692	p.P898S	0.79	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	-	no_errors
ABCA9	10350	broad.mit.edu	36	17	64539997	64539997	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64539997	64539997	C	T	SNP	ABCA9	NM_080283	human	genbank	54_36p	-1	reviewed	missense	c.1292	p.R431Q	0	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA9	10350	broad.mit.edu	36	17	64558770	64558770	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64558770	64558770	C	G	SNP	ABCA9	NM_080283	human	genbank	54_36p	-1	reviewed	missense	c.93	p.L31F	0.01	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA6	23460	broad.mit.edu	36	17	64590624	64590624	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64590624	64590624	G	A	SNP	ABCA6	NM_080284	human	genbank	54_36p	-1	reviewed	missense	c.4601	p.A1534V	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	-	no_errors
ABCA6	23460	broad.mit.edu	36	17	64637467	64637467	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	64637467	64637467	T	G	SNP	ABCA6	NM_080284	human	genbank	54_36p	-1	reviewed	missense	c.812	p.Y271S	1	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA10	10349	broad.mit.edu	36	17	64683231	64683231	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64683231	64683231	G	A	SNP	ABCA10	NM_080282	human	genbank	54_36p	-1	reviewed	missense	c.2788	p.L930F	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA10	10349	broad.mit.edu	36	17	64695444	64695444	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64695444	64695444	C	A	SNP	ABCA10	NM_080282	human	genbank	54_36p	-1	reviewed	missense	c.2303	p.R768M	0.11	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ABCA5	23461	broad.mit.edu	36	17	64763521	64763521	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	64763521	64763521	T	A	SNP	ABCA5	NM_018672	human	genbank	54_36p	-1	reviewed	silent	c.3924	p.S1308	0.98	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCA5	23461	broad.mit.edu	36	17	64778399	64778399	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	64778399	64778399	G	T	SNP	ABCA5	NM_018672	human	genbank	54_36p	-1	reviewed	missense	c.2980	p.H994N	0.98	NULL	"HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MAP2K6	5608	broad.mit.edu	36	17	65028789	65028789	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	65028789	65028789	T	G	SNP	MAP2K6	NM_002758	human	genbank	54_36p	1	reviewed	missense	c.488	p.V163G	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SLC39A11	201266	broad.mit.edu	36	17	68156995	68156995	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	68156995	68156995	C	G	SNP	SLC39A11	NM_139177	human	genbank	54_36p	-1	provisional	missense	c.679	p.A227P	1	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
SDK2	54549	broad.mit.edu	36	17	68899226	68899226	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	68899226	68899226	C	T	SNP	SDK2	ENST00000334543	human	ensembl	54_36p	-1	known	silent	c.2982	p.T994	0.98	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
TTYH2	94015	broad.mit.edu	36	17	69758052	69758052	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	69758052	69758052	C	T	SNP	TTYH2	NM_032646	human	genbank	54_36p	1	reviewed	silent	c.1077	p.H359	1	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors
TTYH2	94015	broad.mit.edu	36	17	69760870	69760870	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	69760870	69760870	C	T	SNP	TTYH2	NM_032646	human	genbank	54_36p	1	reviewed	missense	c.1315	p.R439C	0.96	NULL	HMMPfam_Tweety	-	no_errors
DNAI2	64446	broad.mit.edu	36	17	69813052	69813052	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	69813052	69813052	C	T	SNP	DNAI2	NM_023036	human	genbank	54_36p	1	validated	missense	c.1087	p.H363Y	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
KIF19	124602	broad.mit.edu	36	17	69862025	69862025	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	69862025	69862025	A	C	SNP	KIF19	NM_153209	human	genbank	54_36p	1	validated	missense	c.2438	p.H813P	1	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
GPR142	350383	broad.mit.edu	36	17	69875436	69875436	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	69875436	69875436	G	A	SNP	GPR142	NM_181790	human	genbank	54_36p	1	provisional	nonsense	c.197	p.W66*	1	NULL	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CD300A	11314	broad.mit.edu	36	17	69982300	69982300	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	69982300	69982300	G	T	SNP	CD300A	NM_007261	human	genbank	54_36p	1	validated	silent	c.414	p.A138	0	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	-	no_errors
CD300E	342510	broad.mit.edu	36	17	70125004	70125004	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	70125004	70125004	C	G	SNP	CD300E	NM_181449	human	genbank	54_36p	-1	provisional	missense	c.236	p.R79T	1	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
GRIN2C	2905	broad.mit.edu	36	17	70353800	70353800	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	70353800	70353800	C	T	SNP	GRIN2C	NM_000835	human	genbank	54_36p	-1	reviewed	missense	c.2350	p.G784R	1	"superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
FADS6	283985	broad.mit.edu	36	17	70386174	70386175	+	Missense_Mutation	DNP	GT	GT	CG	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	70386174	70386175	GT	CG	DNP	FADS6	NM_178128	human	genbank	54_36p	-1	validated	missense	c.934_933	p.R312G	0.387:0.453	HMMPfam_FA_desaturase	HMMPfam_FA_desaturase	-	no_errors
OTOP2	92736	broad.mit.edu	36	17	70438657	70438657	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	70438657	70438657	A	T	SNP	OTOP2	NM_178160	human	genbank	54_36p	1	provisional	missense	c.1332	p.Q444H	0.1	NULL	HMMPfam_DUF270	-	no_errors
ICT1	3396	broad.mit.edu	36	17	70528198	70528198	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	70528198	70528198	G	C	SNP	ICT1	NM_001545	human	genbank	54_36p	1	reviewed	missense	c.387	p.R129S	0.29	"superfamily_Peptidyl-tRNA hydrolase domain-like,HMMPfam_RF-1"	"superfamily_Peptidyl-tRNA hydrolase domain-like,HMMPfam_RF-1"	-	no_errors
MIF4GD	57409	broad.mit.edu	36	17	70775508	70775508	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	70775508	70775508	G	A	SNP	MIF4GD	NM_020679	human	genbank	54_36p	-1	validated	nonsense	c.364	p.Q122*	1	"HMMPfam_MIF4G,superfamily_ARM-type_fold"	"HMMPfam_MIF4G,superfamily_ARM-type_fold"	-	no_errors
SLC25A19	60386	broad.mit.edu	36	17	70791212	70791212	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	70791212	70791212	G	A	SNP	SLC25A19	NM_021734	human	genbank	54_36p	-1	reviewed	missense	c.346	p.R116W	0.21	superfamily_Mitochondrial carrier	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr,PatternScan_IG_MHC"	-	no_errors
GRB2	2885	broad.mit.edu	36	17	70829413	70829413	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	70829413	70829413	C	G	SNP	GRB2	NM_002086	human	genbank	54_36p	-1	reviewed	missense	c.390	p.E130D	1	"superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
KIAA0195	9772	broad.mit.edu	36	17	71000178	71000178	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71000178	71000178	A	C	SNP	KIAA0195	NM_014738	human	genbank	54_36p	1	validated	missense	c.1625	p.Y542S	0.05	NULL	superfamily_Calcium ATPase transmembrane domain M	-	no_errors
KIAA0195	9772	broad.mit.edu	36	17	71002622	71002622	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71002622	71002622	C	G	SNP	KIAA0195	NM_014738	human	genbank	54_36p	1	validated	silent	c.2640	p.S880	1	NULL	superfamily_Calcium ATPase transmembrane domain M	-	no_errors
CASKIN2	57513	broad.mit.edu	36	17	71012705	71012705	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71012705	71012705	G	A	SNP	CASKIN2	NM_020753	human	genbank	54_36p	-1	validated	silent	c.975	p.H325	0.97	"superfamily_Ankyrin repeat,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_1"	-	no_errors
TSEN54	283989	broad.mit.edu	36	17	71031376	71031376	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	71031376	71031376	G	C	SNP	TSEN54	NM_207346	human	genbank	54_36p	1	validated	missense	c.1351	p.D451H	1	NULL	NULL	-	no_errors
TSEN54	283989	broad.mit.edu	36	17	71031999	71031999	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71031999	71031999	G	T	SNP	TSEN54	NM_207346	human	genbank	54_36p	1	validated	missense	c.1492	p.V498F	1	NULL	NULL	-	no_errors
SAP30BP	29115	broad.mit.edu	36	17	71210211	71210211	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	71210211	71210211	C	T	SNP	SAP30BP	NM_013260	human	genbank	54_36p	1	validated	silent	c.453	p.Y151	1	HMMPfam_HCNGP	HMMPfam_HCNGP	-	no_errors
TRIM47	91107	broad.mit.edu	36	17	71383647	71383647	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	71383647	71383647	G	A	SNP	TRIM47	NM_033452	human	genbank	54_36p	-1	validated	silent	c.1131	p.C377	0.01	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain"	-	no_errors
MRPL38	64978	broad.mit.edu	36	17	71408918	71408918	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71408918	71408918	G	A	SNP	MRPL38	NM_032478	human	genbank	54_36p	-1	reviewed	missense	c.521	p.A174V	1	"superfamily_PEBP,HMMPfam_PBP"	"superfamily_PEBP,HMMPfam_PBP"	-	no_errors
ACOX1	51	broad.mit.edu	36	17	71467984	71467984	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71467984	71467984	G	T	SNP	ACOX1	NM_004035	human	genbank	54_36p	-1	reviewed	missense	c.337	p.H113N	1	superfamily_AcylCoA_dehyd_NM	"superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_M,PatternScan_AA_TRNA_LIGASE_I,superfamily_AcylCoADH_C_like,HMMPfam_ACOX"	-	no_errors
EVPL	2125	broad.mit.edu	36	17	71517587	71517587	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71517587	71517587	C	A	SNP	EVPL	NM_001988	human	genbank	54_36p	-1	validated	missense	c.3294	p.Q1098H	1	NULL	"superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin"	-	no_errors
SRP68	6730	broad.mit.edu	36	17	71558199	71558199	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	71558199	71558199	C	T	SNP	SRP68	NM_014230	human	genbank	54_36p	-1	reviewed	missense	c.982	p.E328K	1	NULL	superfamily_TPR-like	-	no_errors
RNF157	114804	broad.mit.edu	36	17	71663969	71663969	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	71663969	71663969	T	G	SNP	RNF157	NM_052916	human	genbank	54_36p	-1	validated	missense	c.1442	p.N481T	1	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
QRICH2	84074	broad.mit.edu	36	17	71801315	71801315	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71801315	71801315	T	C	SNP	QRICH2	NM_032134	human	genbank	54_36p	-1	provisional	missense	c.590	p.Q197R	0	NULL	NULL	-	no_errors
QRICH2	84074	broad.mit.edu	36	17	71801356	71801357	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71801356	71801357	GG	AA	DNP	QRICH2	NM_032134	human	genbank	54_36p	-1	provisional	missense	c.549_548	p.T183I	0.000:0.000	NULL	NULL	-	no_errors
SPHK1	8877	broad.mit.edu	36	17	71894576	71894576	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71894576	71894576	A	G	SNP	SPHK1	NM_182965	human	genbank	54_36p	1	validated	missense	c.727	p.T243A	0.33	NULL	"HMMPfam_DAGK_cat,HMMSmart_SM00046"	-	no_errors
UBE2O	63893	broad.mit.edu	36	17	71898707	71898713	+	Frame_Shift_Del	DEL	CCCTTGG	-	CCCTTGG	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CCCTTGG	CCCTTGG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	71898707	71898713	CCCTTGG	-	DEL	UBE2O	NM_022066	human	genbank	54_36p	-1	validated	frame_shift_del	c.3791_3785	p.S1262fs	1.000:1.000:1.000:1.000:1.000:0.996:1.000	NULL	"PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBQ-conjugat/RWD-like,HMMSmart_UBCc,HMMPfam_UQ_con"	"(deletion:cds_exon[71898619,71899289])"	no_errors
UBE2O	63893	broad.mit.edu	36	17	71898724	71898724	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	71898724	71898724	G	C	SNP	UBE2O	NM_022066	human	genbank	54_36p	-1	validated	silent	c.3774	p.L1258	1	NULL	"PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBQ-conjugat/RWD-like,HMMSmart_UBCc,HMMPfam_UQ_con"	-	no_errors
CYGB	114757	broad.mit.edu	36	17	72039287	72039287	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	72039287	72039287	G	T	SNP	CYGB	NM_134268	human	genbank	54_36p	-1	validated	missense	c.225	p.S75R	0.08	"superfamily_Globin-like,HMMPfam_Globin"	"superfamily_Globin-like,HMMPfam_Globin"	-	no_errors
JMJD6	23210	broad.mit.edu	36	17	72233477	72233477	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	72233477	72233477	C	A	SNP	JMJD6	NM_001081461	human	genbank	54_36p	-1	reviewed	missense	c.185	p.R62L	1	superfamily_Clavaminate synthase-like	"superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
JMJD6	23210	broad.mit.edu	36	17	72234131	72234131	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	72234131	72234131	G	T	SNP	JMJD6	NM_001081461	human	genbank	54_36p	-1	reviewed	missense	c.22	p.R8S	1	NULL	"HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like"	-	no_errors
MGAT5B	146664	broad.mit.edu	36	17	72389849	72389849	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	72389849	72389849	G	A	SNP	MGAT5B	NM_198955	human	genbank	54_36p	1	validated	missense	c.236	p.R79H	1	NULL	NULL	-	no_errors
MGAT5B	146664	broad.mit.edu	36	17	72389851	72389851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	72389851	72389851	G	A	SNP	MGAT5B	NM_198955	human	genbank	54_36p	1	validated	missense	c.238	p.G80S	0.99	NULL	NULL	-	no_errors
SEC14L1	6397	broad.mit.edu	36	17	72698958	72698959	+	Missense_Mutation	DNP	GG	GG	CC	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	72698958	72698959	GG	CC	DNP	SEC14L1	NM_001039573	human	genbank	54_36p	1	reviewed	missense	c.314_315	p.R105P	1.000:0.969	HMMPfam_PRELI	"HMMPfam_PRELI,superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_CRAL_TRIO,superfamily_Supernatant protein factor (SPF) C-terminal domain"	-	no_errors
SEPT9	10801	broad.mit.edu	36	17	72995966	72995966	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	72995966	72995966	A	T	SNP	SEPT9	NM_006640	human	genbank	54_36p	1	reviewed	silent	c.1038	p.P346	0.55	"superfamily_SSF52540,HMMPfam_Septin"	"PatternScan_XYLOSE_ISOMERASE_1,superfamily_SSF52540,HMMPfam_Septin"	-	no_errors
TMC8	147138	broad.mit.edu	36	17	73646067	73646067	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	73646067	73646067	C	T	SNP	TMC8	NM_152468	human	genbank	54_36p	1	reviewed	missense	c.1576	p.R526C	1	HMMPfam_TMC	HMMPfam_TMC	-	no_errors
DNAH17	8632	broad.mit.edu	36	17	73967479	73967479	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	73967479	73967479	G	C	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.9620	p.A3207G	1	NULL	"HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy"	-	no_errors
DNAH17	8632	broad.mit.edu	36	17	73969358	73969359	+	Missense_Mutation	DNP	TC	TC	AG	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	73969358	73969359	TC	AG	DNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.9187_9186	p.I3063F	0.001:0.001	NULL	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH17	8632	broad.mit.edu	36	17	74022601	74022601	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	74022601	74022601	C	A	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.3954	p.R1318S	0.48	HMMPfam_DHC_N2	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH17	8632	broad.mit.edu	36	17	74034652	74034652	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	74034652	74034652	T	G	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.3520	p.N1174H	0.85	superfamily_Spectrin repeat	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNAH17	8632	broad.mit.edu	36	17	74034664	74034664	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	17	74034664	74034664	C	G	SNP	DNAH17	ENST00000300671	human	ensembl	54_36p	-1	known	missense	c.3508	p.E1170Q	1	superfamily_Spectrin repeat	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
USP36	57602	broad.mit.edu	36	17	74311298	74311298	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	74311298	74311298	G	A	SNP	USP36	NM_025090	human	genbank	54_36p	-1	validated	silent	c.2574	p.S858	0	NULL	"superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC"	-	no_errors
USP36	57602	broad.mit.edu	36	17	74311393	74311393	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	74311393	74311393	T	C	SNP	USP36	NM_025090	human	genbank	54_36p	-1	validated	missense	c.2479	p.T827A	0	NULL	"HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001"	-	no_errors
ENPP7	339221	broad.mit.edu	36	17	75325572	75325572	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75325572	75325572	C	T	SNP	ENPP7	NM_178543	human	genbank	54_36p	1	validated	silent	c.1164	p.Y388	1	superfamily_Alkaline_phosphatase_core	"superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest"	-	no_errors
CBX8	57332	broad.mit.edu	36	17	75383403	75383403	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75383403	75383403	G	A	SNP	CBX8	NM_020649	human	genbank	54_36p	-1	provisional	missense	c.796	p.P266S	0.98	NULL	"superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1"	-	no_errors
CBX4	8535	broad.mit.edu	36	17	75423079	75423080	+	Missense_Mutation	DNP	CT	CT	GA	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75423079	75423080	CT	GA	DNP	CBX4	NM_003655	human	genbank	54_36p	-1	validated	missense	c.957_956	p.K319I	0.075:0.210	NULL	"superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,PatternScan_CHROMO_1"	-	no_errors
TBC1D16	125058	broad.mit.edu	36	17	75538167	75538168	+	Missense_Mutation	DNP	CT	CT	GC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75538167	75538168	CT	GC	DNP	TBC1D16	NM_019020	human	genbank	54_36p	-1	provisional	missense	c.1350_1349	p.E450G	1.000:1.000	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
CCDC40	55036	broad.mit.edu	36	17	75678206	75678206	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	75678206	75678206	G	A	SNP	CCDC40	NM_017950	human	genbank	54_36p	1	validated	missense	c.2760	p.M920I	1	NULL	HMMPfam_BRE1	-	no_errors
CCDC40	55036	broad.mit.edu	36	17	75678253	75678254	+	Missense_Mutation	DNP	TG	TG	AC	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75678253	75678254	TG	AC	DNP	CCDC40	NM_017950	human	genbank	54_36p	1	validated	missense	c.2807_2808	p.M936N	1.000:1.000	NULL	HMMPfam_BRE1	-	no_errors
GAA	2548	broad.mit.edu	36	17	75696026	75696026	+	Nonsense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75696026	75696026	T	G	SNP	GAA	NM_000152	human	genbank	54_36p	1	reviewed	nonsense	c.768	p.Y256*	0	NULL	"superfamily_P_trefoil,HMMSmart_PD,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Glyco_hydro_31,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2"	-	no_errors
GAA	2548	broad.mit.edu	36	17	75707153	75707153	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	75707153	75707153	C	A	SNP	GAA	NM_000152	human	genbank	54_36p	1	reviewed	missense	c.2753	p.S918Y	0.55	NULL	"HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_PD,superfamily_P_trefoil,superfamily_Glyco_hydro_cat,PatternScan_P_TREFOIL"	-	no_errors
CARD14	79092	broad.mit.edu	36	17	75783598	75783598	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	75783598	75783598	C	T	SNP	CARD14	NM_024110	human	genbank	54_36p	1	reviewed	missense	c.1370	p.S457L	0.37	NULL	"superfamily_DEATH domain,HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
CARD14	79092	broad.mit.edu	36	17	75786558	75786558	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75786558	75786558	T	G	SNP	CARD14	NM_024110	human	genbank	54_36p	1	reviewed	splice_site	c.1658+2	e11+2	0.44	-	-	-	no_errors
CARD14	79092	broad.mit.edu	36	17	75786892	75786892	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	75786892	75786892	C	T	SNP	CARD14	NM_024110	human	genbank	54_36p	1	reviewed	silent	c.1758	p.I586	0.98	superfamily_PDZ domain-like	"HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SGSH	6448	broad.mit.edu	36	17	75799370	75799370	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	75799370	75799370	G	A	SNP	SGSH	NM_000199	human	genbank	54_36p	-1	reviewed	missense	c.985	p.P329S	0.99	"superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase"	"superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2"	-	no_errors
SLC26A11	284129	broad.mit.edu	36	17	75837594	75837594	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75837594	75837594	C	T	SNP	SLC26A11	NM_173626	human	genbank	54_36p	1	provisional	silent	c.1569	p.S523	1	"superfamily_STAS,HMMPfam_STAS"	"PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS"	-	no_errors
RNF213	57674	broad.mit.edu	36	17	75934213	75934213	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	75934213	75934213	A	C	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.1702	p.I568L	0.57	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RNF213	57674	broad.mit.edu	36	17	75935684	75935684	+	Frame_Shift_Del	DEL	G	-	-	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	75935684	75935684	G	-	DEL	RNF213	NM_020914	human	genbank	54_36p	1	validated	frame_shift_del	c.3173	p.N1059fs	0.98	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"(deletion:cds_exon[75933073,75936681])"	no_errors
RNF213	57674	broad.mit.edu	36	17	75952064	75952064	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	75952064	75952064	C	A	SNP	RNF213	NM_020914	human	genbank	54_36p	1	validated	missense	c.5848	p.P1950T	0.82	NULL	"HMMSmart_SM00184,HMMSmart_SM00382,HMMPfam_zf-C3HC4,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
RPTOR	57521	broad.mit.edu	36	17	76535654	76535654	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	76535654	76535654	A	C	SNP	KIAA1303	NM_020761	human	genbank	54_36p	1	validated	missense	c.3173	p.D1058A	1	"superfamily_WD40 repeat-like,HMMSmart_SM00320"	"superfamily_ARM repeat,HMMPfam_HEAT,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
AATK	9625	broad.mit.edu	36	17	76707865	76707866	+	In_Frame_Ins	INS	-	GGGCGT	-	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	76707865	76707866	-	GGGCGT	INS	AATK	NM_001080395	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.4075_4074	p.1358in_frame_insTP	0.083:0.081	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
AZI1	22994	broad.mit.edu	36	17	76779382	76779382	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	76779382	76779382	G	C	SNP	AZI1	NM_014984	human	genbank	54_36p	-1	validated	missense	c.2863	p.L955V	0.02	NULL	NULL	-	no_errors
TMEM105	284186	broad.mit.edu	36	17	76902259	76902259	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	76902259	76902259	G	T	SNP	TMEM105	NM_178520	human	genbank	54_36p	-1	provisional	silent	c.177	p.S59	0	NULL	NULL	-	no_errors
BAHCC1	57597	broad.mit.edu	36	17	77045297	77045297	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	77045297	77045297	G	T	SNP	BAHCC1	NM_001080519	human	genbank	54_36p	1	inferred	missense	c.8052	p.Q2684H	1	"HMMPfam_BAH,HMMSmart_SM00439"	"HMMPfam_BAH,HMMSmart_SM00439"	-	no_errors
ACTG1	71	broad.mit.edu	36	17	77093073	77093073	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	77093073	77093073	G	C	SNP	ACTG1	NM_001614	human	genbank	54_36p	-1	reviewed	missense	c.538	p.L180V	1	"HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain"	"superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2"	-	no_errors
C17orf70	80233	broad.mit.edu	36	17	77123352	77123352	+	Frame_Shift_Del	DEL	A	-	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	77123352	77123352	A	-	DEL	C17orf70	NM_001109760	human	genbank	54_36p	-1	validated	frame_shift_del	c.2183	p.L728fs	0.87	NULL	NULL	"(deletion:cds_exon[77123225,77123361])"	no_errors
NPLOC4	55666	broad.mit.edu	36	17	77190937	77190937	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	77190937	77190937	G	C	SNP	NPLOC4	NM_017921	human	genbank	54_36p	-1	validated	missense	c.239	p.S80W	0.99	NULL	"HMMPfam_zf-NPL4,HMMPfam_NPL4,superfamily_NZF domain,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	-	no_errors
TSPAN10	83882	broad.mit.edu	36	17	77225421	77225421	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	77225421	77225421	G	T	SNP	TSPAN10	ENST00000328585	human	ensembl	54_36p	1	known	missense	c.760	p.V254F	0	"HMMPfam_Tetraspannin,superfamily_Tetraspanin"	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
SLC25A10	1468	broad.mit.edu	36	17	77293168	77293168	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	77293168	77293168	C	G	SNP	SLC25A10	NM_012140	human	genbank	54_36p	1	provisional	silent	c.369	p.V123	0.99	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	-	no_errors
PCYT2	5833	broad.mit.edu	36	17	77457663	77457664	+	Missense_Mutation	DNP	GG	GG	TT	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	77457663	77457664	GG	TT	DNP	PCYT2	NM_002861	human	genbank	54_36p	-1	provisional	missense	c.728_727	p.P243N	1.000:1.000	"superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2"	"superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2"	-	no_errors
NOTUM	147111	broad.mit.edu	36	17	77504235	77504235	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	77504235	77504235	C	A	SNP	NOTUM	NM_178493	human	genbank	54_36p	-1	validated	missense	c.1185	p.M395I	1	NULL	HMMPfam_PAE	-	no_errors
DUS1L	64118	broad.mit.edu	36	17	77614135	77614135	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	77614135	77614135	A	G	SNP	DUS1L	NM_022156	human	genbank	54_36p	-1	validated	missense	c.401	p.L134S	1	"superfamily_SSF51395,HMMPfam_Dus"	"superfamily_SSF51395,HMMPfam_Dus,PatternScan_UPF0034"	-	no_errors
SLC16A3	9123	broad.mit.edu	36	17	77788974	77788974	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	77788974	77788974	G	C	SNP	SLC16A3	NM_001042422	human	genbank	54_36p	1	validated	missense	c.1039	p.V347L	1	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
C17orf101	79701	broad.mit.edu	36	17	77966618	77966618	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	77966618	77966618	C	T	SNP	C17orf101	NM_175902	human	genbank	54_36p	-1	predicted	silent	c.249	p.G83	0.72	NULL	HMMSmart_SM00702	-	no_errors
NARF	26502	broad.mit.edu	36	17	78032319	78032319	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	78032319	78032319	G	T	SNP	NARF	NM_012336	human	genbank	54_36p	1	reviewed	nonsense	c.712	p.E238*	1	"superfamily_Fe-only hydrogenase,HMMPfam_Fe_hyd_lg_C"	"superfamily_Fe-only hydrogenase,HMMPfam_Fe_hyd_lg_C,HMMPfam_Fe_hyd_SSU"	-	no_errors
FN3KRP	79672	broad.mit.edu	36	17	78270216	78270216	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	17	78270216	78270216	T	A	SNP	FN3KRP	NM_024619	human	genbank	54_36p	1	validated	missense	c.287	p.L96Q	0.85	"superfamily_Kinase_like,HMMPfam_Fructosamin_kin"	"superfamily_Kinase_like,HMMPfam_Fructosamin_kin"	-	no_errors
B3GNTL1	146712	broad.mit.edu	36	17	78599885	78599885	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	78599885	78599885	T	C	SNP	B3GNTL1	NM_001009905	human	genbank	54_36p	-1	validated	silent	c.126	p.Q42	0.73	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	-	no_errors
USP14	9097	broad.mit.edu	36	18	188094	188094	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	188094	188094	T	G	SNP	USP14	NM_005151	human	genbank	54_36p	1	reviewed	missense	c.723	p.S241R	1	"superfamily_SSF54001,HMMPfam_UCH"	"HMMSmart_UBQ,superfamily_SSF54236,PatternScan_UBIQUITIN_1,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
THOC1	9984	broad.mit.edu	36	18	213447	213447	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	213447	213447	C	G	SNP	THOC1	NM_005131	human	genbank	54_36p	-1	validated	missense	c.1363	p.E455Q	1	NULL	"superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death"	-	no_errors
COLEC12	81035	broad.mit.edu	36	18	324971	324972	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	18	324971	324972	-	G	INS	COLEC12	NM_130386	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1587_1586	p.P532fs	0.880:0.925	HMMPfam_Collagen	"HMMPfam_Collagen,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
CETN1	1068	broad.mit.edu	36	18	570898	570898	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	570898	570898	C	T	SNP	CETN1	NM_004066	human	genbank	54_36p	1	reviewed	missense	c.490	p.R164W	0.93	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,PatternScan_DEAD_ATP_HELICASE"	-	no_errors
CLUL1	27098	broad.mit.edu	36	18	635002	635002	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	635002	635002	C	G	SNP	CLUL1	NM_014410	human	genbank	54_36p	1	validated	silent	c.1302	p.L434	0.24	"HMMPfam_Clusterin,HMMSmart_CLa"	"HMMPfam_Clusterin,HMMSmart_CLb,HMMSmart_CLa"	-	no_errors
ENOSF1	55556	broad.mit.edu	36	18	678606	678606	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	678606	678606	G	C	SNP	ENOSF1	NM_017512	human	genbank	54_36p	-1	validated	silent	c.621	p.L207	1	"superfamily_Enolase C-terminal domain-like,HMMPfam_MR_MLE"	"superfamily_Enolase N-terminal domain-like,HMMPfam_MR_MLE_N,superfamily_Enolase C-terminal domain-like,HMMPfam_MR_MLE,PatternScan_MR_MLE_2"	-	no_errors
NDC80	10403	broad.mit.edu	36	18	2598740	2598740	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	18	2598740	2598740	G	A	SNP	NDC80	NM_006101	human	genbank	54_36p	1	validated	silent	c.1599	p.E533	1	NULL	HMMPfam_Ndc80_HEC	-	no_errors
SMCHD1	23347	broad.mit.edu	36	18	2687985	2687985	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	2687985	2687985	C	T	SNP	SMCHD1	NM_015295	human	genbank	54_36p	1	validated	missense	c.1288	p.H430Y	1	NULL	"superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,superfamily_Smc hinge domain,HMMPfam_SMC_hinge"	-	no_errors
EMILIN2	84034	broad.mit.edu	36	18	2880859	2880859	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	2880859	2880859	C	A	SNP	EMILIN2	NM_032048	human	genbank	54_36p	1	validated	missense	c.734	p.T245K	0.02	NULL	"HMMPfam_EMI,superfamily_TNF_like,HMMPfam_C1q"	-	no_errors
LPIN2	9663	broad.mit.edu	36	18	2941130	2941130	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	2941130	2941130	C	G	SNP	LPIN2	NM_014646	human	genbank	54_36p	-1	reviewed	missense	c.513	p.Q171H	0	NULL	"HMMPfam_Lipin_N,superfamily_SSF56784,HMMPfam_LNS2,HMMSmart_LNS2"	-	no_errors
MYOM1	8736	broad.mit.edu	36	18	3116832	3116832	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	3116832	3116832	C	T	SNP	MYOM1	NM_003803	human	genbank	54_36p	-1	reviewed	missense	c.2858	p.G953E	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set"	-	no_errors
MYOM1	8736	broad.mit.edu	36	18	3205130	3205130	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	3205130	3205130	C	A	SNP	MYOM1	NM_003803	human	genbank	54_36p	-1	reviewed	missense	c.92	p.R31L	1	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,superfamily_Immunoglobulin"	-	no_errors
TGIF1	7050	broad.mit.edu	36	18	3446474	3446474	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	3446474	3446474	G	T	SNP	TGIF1	NM_170695	human	genbank	54_36p	1	reviewed	missense	c.526	p.V176L	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
DLGAP1	9229	broad.mit.edu	36	18	3869507	3869507	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	3869507	3869507	G	A	SNP	DLGAP1	NM_004746	human	genbank	54_36p	-1	provisional	missense	c.562	p.R188C	0.96	NULL	HMMPfam_GKAP	-	no_errors
DLGAP1	9229	broad.mit.edu	36	18	3869897	3869897	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	3869897	3869897	C	T	SNP	DLGAP1	NM_004746	human	genbank	54_36p	-1	provisional	missense	c.172	p.V58M	1	NULL	HMMPfam_GKAP	-	no_errors
ZFP161	7541	broad.mit.edu	36	18	5281171	5281171	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	5281171	5281171	G	A	SNP	ZFP161	NM_003409	human	genbank	54_36p	-1	validated	missense	c.1036	p.P346S	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
EPB41L3	23136	broad.mit.edu	36	18	5387143	5387143	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	5387143	5387143	T	C	SNP	EPB41L3	NM_012307	human	genbank	54_36p	-1	provisional	missense	c.2755	p.T919A	0	NULL	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD"	-	no_errors
EPB41L3	23136	broad.mit.edu	36	18	5396870	5396870	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	18	5396870	5396870	G	A	SNP	EPB41L3	NM_012307	human	genbank	54_36p	-1	provisional	missense	c.2255	p.T752M	0.15	HMMPfam_SAB	"HMMPfam_SAB,HMMPfam_4_1_CTD,HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like"	-	no_errors
EPB41L3	23136	broad.mit.edu	36	18	5424019	5424019	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	5424019	5424019	T	A	SNP	EPB41L3	NM_012307	human	genbank	54_36p	-1	provisional	missense	c.707	p.E236V	1	"HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295"	"HMMPfam_SAB,HMMPfam_4_1_CTD,HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like"	-	no_errors
LAMA1	284217	broad.mit.edu	36	18	6982560	6982560	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	6982560	6982560	T	G	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.5168	p.K1723T	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA1	284217	broad.mit.edu	36	18	7003922	7003922	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	7003922	7003922	G	A	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	silent	c.3255	p.P1085	0.98	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA1	284217	broad.mit.edu	36	18	7023075	7023075	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	7023075	7023075	C	A	SNP	LAMA1	NM_005559	human	genbank	54_36p	-1	validated	missense	c.2071	p.D691Y	1	"HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281"	###############################################################################################################################################################################################################################################################	-	no_errors
KIAA0802	23255	broad.mit.edu	36	18	8809155	8809155	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	8809155	8809155	G	A	SNP	KIAA0802	NM_015210	human	genbank	54_36p	1	predicted	silent	c.3054	p.S1018	0.62	NULL	NULL	-	no_errors
KIAA0802	23255	broad.mit.edu	36	18	8815314	8815314	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	8815314	8815314	C	T	SNP	KIAA0802	NM_015210	human	genbank	54_36p	1	predicted	missense	c.3806	p.S1269F	0.97	NULL	NULL	-	no_errors
ANKRD12	23253	broad.mit.edu	36	18	9198762	9198762	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	9198762	9198762	G	A	SNP	ANKRD12	NM_015208	human	genbank	54_36p	1	validated	missense	c.412	p.A138T	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
ANKRD12	23253	broad.mit.edu	36	18	9246624	9246624	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	9246624	9246624	T	C	SNP	ANKRD12	NM_015208	human	genbank	54_36p	1	validated	missense	c.3359	p.I1120T	1	superfamily_Ankyrin repeat	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
TWSG1	57045	broad.mit.edu	36	18	9386353	9386368	+	Frame_Shift_Del	DEL	TCCCTTCTCTCTTCCG	-	TCCCTTCTCTCTTCCG	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	TCCCTTCTCTCTTCCG	TCCCTTCTCTCTTCCG	-	-	TCCCTTCTCTCTTCCG	TCCCTTCTCTCTTCCG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	18	9386353	9386368	TCCCTTCTCTCTTCCG	-	DEL	TWSG1	NM_020648	human	genbank	54_36p	1	validated	frame_shift_del	c.299_314	p.I100fs	1.000:1.000:1.000:0.999:0.879:0.997:1.000:0.994:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000	HMMPfam_Tsg	HMMPfam_Tsg	"(deletion:cds_exon[9386278,9386544])"	no_errors
TXNDC2	84203	broad.mit.edu	36	18	9877220	9877220	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	9877220	9877220	G	A	SNP	TXNDC2	NM_001098529	human	genbank	54_36p	1	validated	silent	c.744	p.Q248	0	NULL	"superfamily_Thioredoxin-like,HMMPfam_Thioredoxin"	-	no_errors
SPIRE1	56907	broad.mit.edu	36	18	12454875	12454875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	12454875	12454875	G	A	SNP	SPIRE1	NM_020148	human	genbank	54_36p	-1	validated	missense	c.968	p.T323I	0.22	NULL	superfamily_FYVE_PHD_ZnF	-	no_errors
CEP192	55125	broad.mit.edu	36	18	13039205	13039205	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13039205	13039205	G	T	SNP	CEP192	NM_032142	human	genbank	54_36p	1	validated	missense	c.627	p.M209I	0	NULL	NULL	-	no_errors
CEP192	55125	broad.mit.edu	36	18	13046284	13046284	+	Missense_Mutation	SNP	C	C	G	rs73950982	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13046284	13046284	C	G	SNP	CEP192	NM_032142	human	genbank	54_36p	1	validated	missense	c.1907	p.T636R	0	NULL	NULL	-	no_errors
CEP192	55125	broad.mit.edu	36	18	13049273	13049273	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13049273	13049273	G	A	SNP	CEP192	NM_032142	human	genbank	54_36p	1	validated	missense	c.2662	p.V888I	0.76	NULL	NULL	-	no_errors
CEP192	55125	broad.mit.edu	36	18	13104130	13104130	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13104130	13104130	G	C	SNP	CEP192	NM_032142	human	genbank	54_36p	1	validated	missense	c.5381	p.S1794T	0.98	NULL	NULL	-	no_errors
C18orf1	753	broad.mit.edu	36	18	13635397	13635397	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13635397	13635397	T	G	SNP	C18orf1	NM_181481	human	genbank	54_36p	1	validated	missense	c.662	p.I221S	1	NULL	"superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
MC5R	4161	broad.mit.edu	36	18	13815845	13815845	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	13815845	13815845	A	C	SNP	MC5R	NM_005913	human	genbank	54_36p	1	provisional	missense	c.81	p.K27N	0.45	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MC5R	4161	broad.mit.edu	36	18	13816276	13816276	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13816276	13816276	C	T	SNP	MC5R	NM_005913	human	genbank	54_36p	1	provisional	missense	c.512	p.T171M	0.97	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MC5R	4161	broad.mit.edu	36	18	13816571	13816571	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13816571	13816571	C	T	SNP	MC5R	NM_005913	human	genbank	54_36p	1	provisional	silent	c.807	p.Y269	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MC2R	4158	broad.mit.edu	36	18	13874683	13874683	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2038-01A-01W-0722-08	TCGA-24-2038-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	13874683	13874683	G	A	SNP	MC2R	NM_000529	human	genbank	54_36p	-1	reviewed	missense	c.835	p.R279W	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MC2R	4158	broad.mit.edu	36	18	13875322	13875322	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	13875322	13875322	A	T	SNP	MC2R	NM_000529	human	genbank	54_36p	-1	reviewed	missense	c.196	p.L66M	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
MIB1	57534	broad.mit.edu	36	18	17575693	17575693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	17575693	17575693	G	C	SNP	MIB1	NM_020774	human	genbank	54_36p	1	validated	missense	c.151	p.V51L	1	HMMPfam_MIB_HERC2	"PatternScan_ZF_RING_1,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4"	-	no_errors
MIB1	57534	broad.mit.edu	36	18	17607581	17607587	+	Splice_Site	DEL	AGGTAAC	-	AGGTAAC	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	AGGTAAC	AGGTAAC	-	-	AGGTAAC	AGGTAAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	18	17607581	17607587	AGGTAAC	-	DEL	MIB1	NM_020774	human	genbank	54_36p	1	validated	splice_site_del	c.532-2_532-1	e4-1	0.998:1.000:1.000:1.000:1.000:1.000:1.000	-	-	"(deletion:intron[17602712,17607582], cds_exon[17607583,17607687])"	no_errors
MIB1	57534	broad.mit.edu	36	18	17649662	17649662	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	17649662	17649662	T	G	SNP	MIB1	NM_020774	human	genbank	54_36p	1	validated	missense	c.1567	p.L523V	0.99	"HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK"	"HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_RING,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_MIB_HERC2,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850"	-	no_errors
CTAGE1	64693	broad.mit.edu	36	18	18251045	18251045	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	18251045	18251045	T	C	SNP	CTAGE1	NM_172241	human	genbank	54_36p	-1	validated	missense	c.728	p.K243R	0.57	NULL	NULL	-	no_errors
RBBP8	5932	broad.mit.edu	36	18	18831639	18831639	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	18	18831639	18831639	G	A	SNP	RBBP8	NM_002894	human	genbank	54_36p	1	reviewed	missense	c.2087	p.S696N	1	NULL	"HMMPfam_CtIP_N,HMMPfam_SAE2"	-	no_errors
RBBP8	5932	broad.mit.edu	36	18	18856129	18856129	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	18856129	18856129	T	C	SNP	RBBP8	NM_002894	human	genbank	54_36p	1	reviewed	silent	c.2494	p.L832	1	HMMPfam_SAE2	"HMMPfam_SAE2,HMMPfam_CtIP_N"	-	no_errors
C18orf45	85019	broad.mit.edu	36	18	19132002	19132002	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	19132002	19132002	G	T	SNP	C18orf45	NM_032933	human	genbank	54_36p	-1	validated	silent	c.858	p.A286	1	superfamily_Multidrug resistance efflux transporter EmrE	superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
RIOK3	8780	broad.mit.edu	36	18	19298580	19298580	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	18	19298580	19298580	G	C	SNP	RIOK3	NM_003831	human	genbank	54_36p	1	reviewed	missense	c.533	p.R178T	1	NULL	"HMMSmart_SM00090,superfamily_Protein kinase-like (PK-like),HMMPfam_RIO1,PatternScan_RIO1"	-	no_errors
ANKRD29	147463	broad.mit.edu	36	18	19472839	19472839	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	19472839	19472839	A	C	SNP	ANKRD29	NM_173505	human	genbank	54_36p	-1	validated	missense	c.302	p.F101C	1	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank"	-	no_errors
ANKRD29	147463	broad.mit.edu	36	18	19483072	19483072	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	19483072	19483072	G	A	SNP	ANKRD29	NM_173505	human	genbank	54_36p	-1	validated	silent	c.105	p.G35	0.61	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
LAMA3	3909	broad.mit.edu	36	18	19583423	19583423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	19583423	19583423	G	A	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.599	p.R200Q	1	"HMMSmart_SM00136,HMMPfam_Laminin_N"	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA3	3909	broad.mit.edu	36	18	19656271	19656271	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	19656271	19656271	A	C	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.2362	p.I788L	0.88	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA3	3909	broad.mit.edu	36	18	19673834	19673834	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	19673834	19673834	C	G	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	silent	c.3279	p.P1093	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA3	3909	broad.mit.edu	36	18	19692763	19692763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	19692763	19692763	G	A	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.4394	p.C1465Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LAMA3	3909	broad.mit.edu	36	18	19739528	19739528	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	18	19739528	19739528	T	A	SNP	LAMA3	NM_198129	human	genbank	54_36p	1	reviewed	missense	c.6660	p.S2220R	0.96	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
OSBPL1A	114876	broad.mit.edu	36	18	20000584	20000584	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	20000584	20000584	G	A	SNP	OSBPL1A	NM_080597	human	genbank	54_36p	-1	reviewed	silent	c.2616	p.C872	1	HMMPfam_Oxysterol_BP	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
OSBPL1A	114876	broad.mit.edu	36	18	20012090	20012090	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	20012090	20012090	C	T	SNP	OSBPL1A	NM_080597	human	genbank	54_36p	-1	reviewed	missense	c.1978	p.A660T	1	HMMPfam_Oxysterol_BP	"HMMPfam_Oxysterol_BP,HMMSmart_SM00233,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,PatternScan_OSBP,superfamily_PH domain-like"	-	no_errors
ZNF521	25925	broad.mit.edu	36	18	21058913	21058913	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	21058913	21058913	G	T	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	missense	c.2967	p.N989K	1	HMMSmart_SM00355	"HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF521	25925	broad.mit.edu	36	18	21058980	21058980	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	21058980	21058980	C	T	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	missense	c.2900	p.R967Q	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF521	25925	broad.mit.edu	36	18	21059632	21059632	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	21059632	21059632	T	C	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	missense	c.2248	p.K750E	1	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF521	25925	broad.mit.edu	36	18	21059702	21059702	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	21059702	21059702	G	A	SNP	ZNF521	NM_015461	human	genbank	54_36p	-1	validated	silent	c.2178	p.L726	0.97	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CDH2	1000	broad.mit.edu	36	18	23819523	23819523	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	23819523	23819523	T	C	SNP	CDH2	NM_001792	human	genbank	54_36p	-1	reviewed	missense	c.1942	p.I648V	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH2	1000	broad.mit.edu	36	18	23839844	23839844	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	23839844	23839844	A	T	SNP	CDH2	NM_001792	human	genbank	54_36p	-1	reviewed	missense	c.814	p.W272R	1	"HMMPfam_Cadherin,superfamily_Cadherin-like"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like"	-	no_errors
DSC1	1823	broad.mit.edu	36	18	26968040	26968040	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	26968040	26968040	G	A	SNP	DSC1	NM_024421	human	genbank	54_36p	-1	reviewed	missense	c.1928	p.S643F	0	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"HMMPfam_Cadherin_pro,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DSC1	1823	broad.mit.edu	36	18	26988799	26988799	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	26988799	26988799	T	C	SNP	DSC1	NM_024421	human	genbank	54_36p	-1	reviewed	missense	c.563	p.E188G	0.99	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like"	-	no_errors
DSG1	1828	broad.mit.edu	36	18	27177479	27177479	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	27177479	27177479	G	T	SNP	DSG1	NM_001942	human	genbank	54_36p	1	reviewed	missense	c.1756	p.V586F	1	NULL	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C,PatternScan_PHOSPHOPANTETHEINE"	-	no_errors
DSG4	147409	broad.mit.edu	36	18	27222370	27222370	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27222370	27222370	A	T	SNP	DSG4	NM_177986	human	genbank	54_36p	1	validated	missense	c.259	p.I87F	0.84	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1"	-	no_errors
DSG4	147409	broad.mit.edu	36	18	27225093	27225093	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	27225093	27225093	G	A	SNP	DSG4	NM_177986	human	genbank	54_36p	1	validated	missense	c.739	p.D247N	0.91	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
DSG3	1830	broad.mit.edu	36	18	27293046	27293046	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	27293046	27293046	T	C	SNP	DSG3	NM_001944	human	genbank	54_36p	1	reviewed	missense	c.425	p.I142T	0.41	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin"	"HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin,PatternScan_CADHERIN_1"	-	no_errors
DSG3	1830	broad.mit.edu	36	18	27300615	27300615	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27300615	27300615	C	T	SNP	DSG3	NM_001944	human	genbank	54_36p	1	reviewed	silent	c.1536	p.S512	0	superfamily_Cadherin	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
DSG3	1830	broad.mit.edu	36	18	27309913	27309913	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27309913	27309913	T	G	SNP	DSG3	NM_001944	human	genbank	54_36p	1	reviewed	missense	c.2692	p.C898G	0.01	NULL	"HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin"	-	no_errors
DSG2	1829	broad.mit.edu	36	18	27375185	27375185	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27375185	27375185	C	T	SNP	DSG2	NM_001943	human	genbank	54_36p	1	reviewed	silent	c.1911	p.C637	0.96	NULL	"superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1"	-	no_errors
TRAPPC8	22878	broad.mit.edu	36	18	27666044	27666044	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27666044	27666044	C	T	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	splice_site	c.4073+1	e28+1	1	-	-	-	no_errors
TRAPPC8	22878	broad.mit.edu	36	18	27673300	27673300	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27673300	27673300	G	A	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	missense	c.3956	p.S1319L	1	NULL	superfamily_TPR-like	-	no_errors
TRAPPC8	22878	broad.mit.edu	36	18	27686579	27686579	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27686579	27686579	G	C	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	missense	c.3479	p.A1160G	1	NULL	superfamily_TPR-like	-	no_errors
TRAPPC8	22878	broad.mit.edu	36	18	27689653	27689653	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27689653	27689653	G	C	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	missense	c.3304	p.L1102V	1	NULL	superfamily_TPR-like	-	no_errors
TRAPPC8	22878	broad.mit.edu	36	18	27747391	27747391	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	27747391	27747391	G	A	SNP	KIAA1012	NM_014939	human	genbank	54_36p	-1	validated	missense	c.710	p.S237L	1	NULL	superfamily_TPR-like	-	no_errors
MEP1B	4225	broad.mit.edu	36	18	28041333	28041333	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	28041333	28041333	C	T	SNP	MEP1B	NM_005925	human	genbank	54_36p	1	validated	missense	c.668	p.T223I	1	"superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Astacin"	"superfamily_Metalloproteases (zincins) catalytic domain,HMMSmart_SM00235,HMMPfam_Astacin,HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH"	-	no_errors
KLHL14	57565	broad.mit.edu	36	18	28511206	28511206	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	28511206	28511206	C	A	SNP	KLHL14	NM_020805	human	genbank	54_36p	-1	provisional	missense	c.1674	p.E558D	0.99	"superfamily_Gal_oxid_central,HMMSmart_Kelch"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
KLHL14	57565	broad.mit.edu	36	18	28514445	28514445	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	28514445	28514445	G	A	SNP	KLHL14	NM_020805	human	genbank	54_36p	-1	provisional	missense	c.1354	p.R452C	1	"HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central"	"HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
C18orf34	374864	broad.mit.edu	36	18	29049566	29049566	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	29049566	29049566	A	T	SNP	C18orf34	NM_001105528	human	genbank	54_36p	-1	validated	nonsense	c.2024	p.L675*	0	NULL	NULL	-	no_errors
C18orf34	374864	broad.mit.edu	36	18	29182907	29182907	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	29182907	29182907	T	G	SNP	C18orf34	NM_001105528	human	genbank	54_36p	-1	validated	missense	c.402	p.K134N	0	NULL	NULL	-	no_errors
ASXL3	80816	broad.mit.edu	36	18	29572453	29572453	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	29572453	29572453	G	A	SNP	ASXL3	NM_030632	human	genbank	54_36p	1	validated	missense	c.1087	p.G363S	1	NULL	NULL	-	no_errors
ASXL3	80816	broad.mit.edu	36	18	29576967	29576967	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	29576967	29576967	A	T	SNP	ASXL3	NM_030632	human	genbank	54_36p	1	validated	missense	c.3157	p.T1053S	1	NULL	NULL	-	no_errors
NOL4	8715	broad.mit.edu	36	18	29777135	29777135	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	29777135	29777135	T	C	SNP	NOL4	NM_003787	human	genbank	54_36p	-1	validated	silent	c.1434	p.R478	1	NULL	NULL	-	no_errors
DTNA	1837	broad.mit.edu	36	18	30652186	30652186	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	30652186	30652186	G	T	SNP	DTNA	NM_001390	human	genbank	54_36p	1	reviewed	missense	c.770	p.R257L	1	"HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	"superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
GALNT1	2589	broad.mit.edu	36	18	31488699	31488699	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	31488699	31488699	G	A	SNP	GALNT1	NM_020474	human	genbank	54_36p	1	reviewed	silent	c.75	p.L25	1	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin"	-	no_errors
GALNT1	2589	broad.mit.edu	36	18	31497589	31497589	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	31497589	31497589	G	C	SNP	GALNT1	NM_020474	human	genbank	54_36p	1	reviewed	splice_site	c.140-1	e2-1	1	-	-	-	no_errors
RPRD1A	55197	broad.mit.edu	36	18	31860957	31860957	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	31860957	31860957	C	T	SNP	RPRD1A	NM_018170	human	genbank	54_36p	-1	provisional	silent	c.693	p.A231	0.98	NULL	"superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618"	-	no_errors
FHOD3	80206	broad.mit.edu	36	18	32552396	32552396	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	32552396	32552396	C	G	SNP	FHOD3	NM_025135	human	genbank	54_36p	1	validated	missense	c.2612	p.P871R	1	superfamily_FH2_actin_bd	"superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2"	-	no_errors
FHOD3	80206	broad.mit.edu	36	18	32578131	32578131	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	32578131	32578131	G	A	SNP	FHOD3	NM_025135	human	genbank	54_36p	1	validated	missense	c.3493	p.G1165R	1	"HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd"	"HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd,superfamily_ARM-type_fold"	-	no_errors
FHOD3	80206	broad.mit.edu	36	18	32594639	32594639	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	32594639	32594639	C	T	SNP	FHOD3	NM_025135	human	genbank	54_36p	1	validated	missense	c.3971	p.A1324V	0.98	HMMSmart_FH2	"HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd,superfamily_ARM-type_fold"	-	no_errors
CELF4	56853	broad.mit.edu	36	18	33107003	33107003	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	33107003	33107003	G	A	SNP	BRUNOL4	NM_020180	human	genbank	54_36p	-1	reviewed	missense	c.923	p.A308V	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
KIAA1632	57724	broad.mit.edu	36	18	41692528	41692528	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	41692528	41692528	C	A	SNP	KIAA1632	NM_020964	human	genbank	54_36p	-1	validated	splice_site	c.7226+1	e41+1	1	-	-	-	no_errors
ST8SIA5	29906	broad.mit.edu	36	18	42522804	42522804	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	18	42522804	42522804	G	T	SNP	ST8SIA5	NM_013305	human	genbank	54_36p	-1	reviewed	missense	c.388	p.L130I	1	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
KIAA0427	9811	broad.mit.edu	36	18	44639822	44639822	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	18	44639822	44639822	G	A	SNP	KIAA0427	NM_014772	human	genbank	54_36p	1	validated	missense	c.1691	p.R564Q	1	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543"	"superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543"	-	no_errors
SMAD7	4092	broad.mit.edu	36	18	44730313	44730313	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	44730313	44730313	G	T	SNP	SMAD7	NM_005904	human	genbank	54_36p	-1	provisional	nonsense	c.480	p.C160*	1	"superfamily_MAD_MH1,HMMSmart_DWA,HMMPfam_MH1"	"superfamily_MAD_MH1,HMMSmart_DWA,HMMPfam_MH1,superfamily_SMAD_FHA,HMMPfam_MH2,HMMSmart_DWB"	-	no_errors
LIPG	9388	broad.mit.edu	36	18	45345834	45345834	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	45345834	45345834	G	A	SNP	LIPG	NM_006033	human	genbank	54_36p	1	reviewed	missense	c.247	p.A83T	1	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase"	"superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308"	-	no_errors
MYO5B	4645	broad.mit.edu	36	18	45686875	45686875	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	45686875	45686875	G	A	SNP	MYO5B	NM_001080467	human	genbank	54_36p	-1	provisional	missense	c.2326	p.R776W	1	"HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO5B	4645	broad.mit.edu	36	18	45717663	45717663	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	45717663	45717663	G	T	SNP	MYO5B	NM_001080467	human	genbank	54_36p	-1	provisional	missense	c.1855	p.P619T	0.92	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DCC	1630	broad.mit.edu	36	18	49086015	49086015	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	49086015	49086015	C	T	SNP	DCC	NM_005215	human	genbank	54_36p	1	validated	nonsense	c.1981	p.R661*	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C"	-	no_errors
POLI	11201	broad.mit.edu	36	18	50063294	50063294	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	50063294	50063294	A	G	SNP	POLI	NM_007195	human	genbank	54_36p	1	validated	missense	c.886	p.K296E	1	"superfamily_DNA/RNA polymerases,HMMPfam_IMS"	"superfamily_DNA/RNA polymerases,HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain"	-	no_errors
WDR7	23335	broad.mit.edu	36	18	52509591	52509591	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	52509591	52509591	G	A	SNP	WDR7	NM_015285	human	genbank	54_36p	1	reviewed	splice_site	c.863+1	e7+1	1	-	-	-	no_errors
WDR7	23335	broad.mit.edu	36	18	52514569	52514569	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	52514569	52514569	A	C	SNP	WDR7	NM_015285	human	genbank	54_36p	1	reviewed	missense	c.1456	p.I486L	1	"superfamily_Prolyl oligopeptidase N-terminal domain,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,superfamily_WD40 repeat-like"	-	no_errors
ONECUT2	9480	broad.mit.edu	36	18	53294727	53294727	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	53294727	53294727	G	A	SNP	ONECUT2	NM_004852	human	genbank	54_36p	1	reviewed	missense	c.1289	p.R430H	1	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	"HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
ONECUT2	9480	broad.mit.edu	36	18	53294750	53294750	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	53294750	53294750	C	T	SNP	ONECUT2	NM_004852	human	genbank	54_36p	1	reviewed	missense	c.1312	p.R438C	1	"HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like"	-	no_errors
ATP8B1	5205	broad.mit.edu	36	18	53479435	53479435	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	53479435	53479435	T	C	SNP	ATP8B1	NM_005603	human	genbank	54_36p	-1	reviewed	silent	c.2676	p.G892	1	"superfamily_SSF81665,superfamily_SSF56784"	"superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660"	-	no_errors
ATP8B1	5205	broad.mit.edu	36	18	53506591	53506591	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	53506591	53506591	G	A	SNP	ATP8B1	NM_005603	human	genbank	54_36p	-1	reviewed	missense	c.1367	p.T456M	1	"PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81665"	"HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665"	-	no_errors
ALPK2	115701	broad.mit.edu	36	18	54354532	54354532	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	54354532	54354532	G	A	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	silent	c.3867	p.A1289	0	NULL	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase"	-	no_errors
ALPK2	115701	broad.mit.edu	36	18	54354971	54354971	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	54354971	54354971	G	C	SNP	ALPK2	NM_052947	human	genbank	54_36p	-1	validated	missense	c.3428	p.S1143C	0	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
MALT1	10892	broad.mit.edu	36	18	54541318	54541318	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	54541318	54541318	C	T	SNP	MALT1	NM_006785	human	genbank	54_36p	1	reviewed	silent	c.1077	p.L359	0.96	"superfamily_Caspase-like,HMMPfam_Peptidase_C14"	"superfamily_DEATH domain,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Caspase-like,HMMPfam_Peptidase_C14"	-	no_errors
MALT1	10892	broad.mit.edu	36	18	54565850	54565850	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	54565850	54565850	C	T	SNP	MALT1	NM_006785	human	genbank	54_36p	1	reviewed	silent	c.2271	p.F757	0.04	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_Caspase-like"	-	no_errors
CPLX4	339302	broad.mit.edu	36	18	55130981	55130981	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	55130981	55130981	C	A	SNP	CPLX4	NM_181654	human	genbank	54_36p	-1	reviewed	missense	c.171	p.M57I	1	NULL	NULL	-	no_errors
LMAN1	3998	broad.mit.edu	36	18	55177244	55177244	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	55177244	55177244	C	A	SNP	LMAN1	NM_005570	human	genbank	54_36p	-1	reviewed	silent	c.213	p.G71	1	"superfamily_ConA_like_lec_gl,HMMPfam_Lectin_leg-like"	"superfamily_ConA_like_lec_gl,HMMPfam_Lectin_leg-like"	-	no_errors
CCBE1	147372	broad.mit.edu	36	18	55258017	55258017	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	55258017	55258017	G	T	SNP	CCBE1	NM_133459	human	genbank	54_36p	-1	provisional	missense	c.787	p.P263T	1	HMMPfam_Collagen	"superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_Collagen"	-	no_errors
MC4R	4160	broad.mit.edu	36	18	56190554	56190554	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	56190554	56190554	G	T	SNP	MC4R	NM_005912	human	genbank	54_36p	-1	validated	missense	c.9	p.N3K	0.97	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CDH20	28316	broad.mit.edu	36	18	57308945	57308945	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	18	57308945	57308945	G	C	SNP	CDH20	NM_031891	human	genbank	54_36p	1	reviewed	missense	c.179	p.S60T	1	superfamily_Cadherin	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
KIAA1468	57614	broad.mit.edu	36	18	58045615	58045615	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	58045615	58045615	G	T	SNP	KIAA1468	NM_020854	human	genbank	54_36p	1	validated	silent	c.972	p.V324	1	NULL	"HMMSmart_SM00667,superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
SERPINB5	5268	broad.mit.edu	36	18	59321726	59321726	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	59321726	59321726	A	T	SNP	SERPINB5	NM_002639	human	genbank	54_36p	1	validated	missense	c.919	p.M307L	1	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093"	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
SERPINB13	5275	broad.mit.edu	36	18	59411136	59411136	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	59411136	59411136	C	T	SNP	SERPINB13	NM_012397	human	genbank	54_36p	1	validated	silent	c.423	p.A141	1	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093"	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
SERPINB4	6318	broad.mit.edu	36	18	59460015	59460015	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	59460015	59460015	C	T	SNP	SERPINB4	NM_002974	human	genbank	54_36p	-1	validated	missense	c.310	p.A104T	0.85	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN"	"HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
SERPINB4	6318	broad.mit.edu	36	18	59461637	59461637	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	59461637	59461637	T	G	SNP	SERPINB4	NM_002974	human	genbank	54_36p	-1	validated	missense	c.155	p.Q52P	0.25	"HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin"	"HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin"	-	no_errors
SERPINB3	6317	broad.mit.edu	36	18	59477628	59477628	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	59477628	59477628	C	T	SNP	SERPINB3	NM_006919	human	genbank	54_36p	-1	validated	silent	c.336	p.T112	0	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093"	"HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN"	-	no_errors
CDH7	1005	broad.mit.edu	36	18	61677924	61677924	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	61677924	61677924	G	T	SNP	CDH7	NM_004361	human	genbank	54_36p	1	reviewed	missense	c.1495	p.V499F	1	"superfamily_Cadherin-like,HMMPfam_Cadherin"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
DSEL	92126	broad.mit.edu	36	18	63329428	63329428	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	63329428	63329428	A	T	SNP	DSEL	NM_032160	human	genbank	54_36p	-1	validated	missense	c.3428	p.F1143Y	0.99	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSEL	92126	broad.mit.edu	36	18	63332719	63332719	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	63332719	63332719	G	A	SNP	DSEL	NM_032160	human	genbank	54_36p	-1	validated	missense	c.137	p.T46I	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RTTN	25914	broad.mit.edu	36	18	65835628	65835628	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	65835628	65835628	G	C	SNP	RTTN	NM_173630	human	genbank	54_36p	-1	validated	missense	c.6416	p.A2139G	1	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
RTTN	25914	broad.mit.edu	36	18	65910378	65910378	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	65910378	65910378	G	C	SNP	RTTN	NM_173630	human	genbank	54_36p	-1	validated	missense	c.4091	p.T1364S	0.29	NULL	superfamily_ARM repeat	-	no_errors
SOCS6	9306	broad.mit.edu	36	18	66143303	66143303	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	18	66143303	66143303	G	A	SNP	SOCS6	NM_004232	human	genbank	54_36p	1	reviewed	missense	c.419	p.R140Q	1	NULL	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,HMMSmart_SOCS,HMMPfam_SOCS_box"	-	no_errors
NETO1	81832	broad.mit.edu	36	18	68602040	68602040	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	18	68602040	68602040	T	A	SNP	NETO1	NM_138966	human	genbank	54_36p	-1	reviewed	missense	c.721	p.S241C	1	"superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1"	-	no_errors
NETO1	81832	broad.mit.edu	36	18	68677194	68677194	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	18	68677194	68677194	C	A	SNP	NETO1	NM_138966	human	genbank	54_36p	-1	reviewed	nonsense	c.316	p.G106*	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module"	-	no_errors
FBXO15	201456	broad.mit.edu	36	18	69891772	69891772	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	69891772	69891772	C	A	SNP	FBXO15	NM_152676	human	genbank	54_36p	-1	reviewed	silent	c.1209	p.L403	1	NULL	"HMMSmart_FBOX,HMMPfam_F-box,superfamily_SSF81383"	-	no_errors
FBXO15	201456	broad.mit.edu	36	18	69944263	69944263	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	69944263	69944263	G	C	SNP	FBXO15	NM_152676	human	genbank	54_36p	-1	reviewed	missense	c.611	p.S204C	0.01	NULL	"HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383"	-	no_errors
FAM69C	125704	broad.mit.edu	36	18	70254719	70254719	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	70254719	70254719	C	A	SNP	C18orf51	NM_001044369	human	genbank	54_36p	-1	validated	missense	c.360	p.K120N	0.23	NULL	NULL	-	no_errors
CNDP2	55748	broad.mit.edu	36	18	70334551	70334551	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	70334551	70334551	G	A	SNP	CNDP2	NM_018235	human	genbank	54_36p	1	provisional	missense	c.1012	p.G338S	0.85	"superfamily_SSF53187,HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer"	"PatternScan_ARGE_DAPE_CPG2_1,superfamily_SSF53187,HMMPfam_Peptidase_M20,PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer"	-	no_errors
CNDP2	55748	broad.mit.edu	36	18	70338249	70338249	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	70338249	70338249	C	T	SNP	CNDP2	NM_018235	human	genbank	54_36p	1	provisional	missense	c.1394	p.A465V	1	"HMMPfam_Peptidase_M20,superfamily_SSF53187"	"PatternScan_ARGE_DAPE_CPG2_1,PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer,superfamily_SSF53187"	-	no_errors
ZNF407	55628	broad.mit.edu	36	18	70475759	70475759	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	70475759	70475759	G	A	SNP	ZNF407	NM_017757	human	genbank	54_36p	1	provisional	missense	c.3796	p.V1266I	0	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00451,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
ZNF407	55628	broad.mit.edu	36	18	70904166	70904166	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	70904166	70904166	T	A	SNP	ZNF407	NM_017757	human	genbank	54_36p	1	provisional	missense	c.5501	p.F1834Y	1	NULL	"HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_Glucocorticoid receptor-like (DNA-binding domain)"	-	no_errors
TSHZ1	10194	broad.mit.edu	36	18	71127104	71127104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	71127104	71127104	A	T	SNP	TSHZ1	NM_005786	human	genbank	54_36p	1	reviewed	missense	c.619	p.S207C	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
ZNF236	7776	broad.mit.edu	36	18	72692785	72692785	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	72692785	72692785	A	C	SNP	ZNF236	NM_007345	human	genbank	54_36p	1	validated	missense	c.259	p.T87P	0.96	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF236	7776	broad.mit.edu	36	18	72751087	72751087	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	72751087	72751087	C	G	SNP	ZNF236	NM_007345	human	genbank	54_36p	1	validated	missense	c.2621	p.S874C	0.98	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF236	7776	broad.mit.edu	36	18	72766420	72766420	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	72766420	72766420	G	A	SNP	ZNF236	NM_007345	human	genbank	54_36p	1	validated	missense	c.3943	p.V1315I	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF236	7776	broad.mit.edu	36	18	72788516	72788516	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	72788516	72788516	G	T	SNP	ZNF236	NM_007345	human	genbank	54_36p	1	validated	nonsense	c.4828	p.G1610*	0.01	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF236	7776	broad.mit.edu	36	18	72801720	72801720	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	72801720	72801720	C	A	SNP	ZNF236	NM_007345	human	genbank	54_36p	1	validated	nonsense	c.5334	p.Y1778*	1	"HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
MBP	4155	broad.mit.edu	36	18	72858147	72858147	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	72858147	72858147	G	A	SNP	MBP	NM_001025101	human	genbank	54_36p	-1	reviewed	missense	c.205	p.R69C	1	NULL	"HMMPfam_Myelin_MBP,PatternScan_MYELIN_MBP"	-	no_errors
GALR1	2587	broad.mit.edu	36	18	73109662	73109662	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	18	73109662	73109662	A	G	SNP	GALR1	NM_001480	human	genbank	54_36p	1	reviewed	missense	c.866	p.H289R	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SALL3	27164	broad.mit.edu	36	18	74854204	74854204	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	74854204	74854204	C	A	SNP	SALL3	NM_171999	human	genbank	54_36p	1	validated	missense	c.1225	p.P409T	1	NULL	"HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ATP9B	374868	broad.mit.edu	36	18	74957468	74957468	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	74957468	74957468	C	G	SNP	ATP9B	NM_198531	human	genbank	54_36p	1	validated	missense	c.124	p.Q42E	0.99	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
NFATC1	4772	broad.mit.edu	36	18	75312053	75312053	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	75312053	75312053	C	T	SNP	NFATC1	NM_172387	human	genbank	54_36p	1	reviewed	silent	c.1662	p.H554	1	"superfamily_p53-like transcription factors,HMMPfam_RHD"	"superfamily_p53-like transcription factors,HMMPfam_RHD,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG"	-	no_errors
CTDP1	9150	broad.mit.edu	36	18	75558969	75558970	+	Missense_Mutation	DNP	CG	CG	GT	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	75558969	75558970	CG	GT	DNP	CTDP1	NM_004715	human	genbank	54_36p	1	reviewed	missense	c.614_615	p.S205C	1.000:1.000	"superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577"	"superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577,superfamily_BRCT domain,HMMSmart_SM00292,HMMPfam_BRCT,HMMPfam_FCP1_C"	-	no_errors
PQLC1	80148	broad.mit.edu	36	18	75811712	75811712	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	75811712	75811712	C	T	SNP	PQLC1	NM_025078	human	genbank	54_36p	-1	provisional	nonsense	c.203	p.W68*	1	HMMPfam_PQ-loop	"HMMPfam_PQ-loop,HMMSmart_SM00679"	-	no_errors
C18orf22	79863	broad.mit.edu	36	18	75899510	75899510	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	75899510	75899510	C	A	SNP	C18orf22	NM_024805	human	genbank	54_36p	1	predicted	missense	c.396	p.D132E	1	superfamily_Ribosome-binding factor A RbfA	"superfamily_Ribosome-binding factor A RbfA,PatternScan_RBFA"	-	no_errors
ADNP2	22850	broad.mit.edu	36	18	75996151	75996151	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	18	75996151	75996151	G	T	SNP	ADNP2	NM_014913	human	genbank	54_36p	1	validated	missense	c.1864	p.V622F	0.16	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00389"	-	no_errors
ADNP2	22850	broad.mit.edu	36	18	75997592	75997592	+	Missense_Mutation	SNP	T	T	C	rs11553022	by-hapmap	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	18	75997592	75997592	T	C	SNP	ADNP2	NM_014913	human	genbank	54_36p	1	validated	missense	c.3305	p.I1102T	0.98	"HMMSmart_SM00389,superfamily_Homeodomain-like"	"HMMSmart_SM00389,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
THEG	51298	broad.mit.edu	36	19	313215	313215	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	313215	313215	G	A	SNP	THEG	NM_016585	human	genbank	54_36p	-1	reviewed	silent	c.1125	p.P375	0	NULL	HMMSmart_SM00705	-	no_errors
SHC2	25759	broad.mit.edu	36	19	376176	376176	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	376176	376176	C	G	SNP	SHC2	NM_012435	human	genbank	54_36p	-1	validated	missense	c.759	p.E253D	1	NULL	"superfamily_PH domain-like,HMMPfam_PID,HMMSmart_SM00462,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
PRTN3	5657	broad.mit.edu	36	19	794898	794898	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	794898	794898	A	G	SNP	PRTN3	NM_002777	human	genbank	54_36p	1	validated	missense	c.233	p.Q78R	0	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
KISS1R	84634	broad.mit.edu	36	19	871425	871425	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	871425	871425	G	C	SNP	KISS1R	NM_032551	human	genbank	54_36p	1	reviewed	missense	c.874	p.G292R	0.07	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
ARID3A	1820	broad.mit.edu	36	19	919497	919497	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	919497	919497	T	G	SNP	ARID3A	NM_005224	human	genbank	54_36p	1	reviewed	missense	c.1588	p.Y530D	1	NULL	"superfamily_ARID,HMMPfam_ARID,HMMSmart_BRIGHT"	-	no_errors
ABCA7	10347	broad.mit.edu	36	19	993357	993357	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	993357	993357	G	A	SNP	ABCA7	NM_019112	human	genbank	54_36p	1	reviewed	missense	c.459	p.M153I	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
HMHA1	23526	broad.mit.edu	36	19	1030997	1030997	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	1030997	1030997	G	C	SNP	HMHA1	NM_012292	human	genbank	54_36p	1	validated	missense	c.1583	p.C528S	1	NULL	"HMMSmart_FCH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
NDUFS7	374291	broad.mit.edu	36	19	1341968	1341969	+	Missense_Mutation	DNP	CT	CT	GG	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	1341968	1341969	CT	GG	DNP	NDUFS7	NM_024407	human	genbank	54_36p	1	reviewed	missense	c.327_328	p.F110V	0.966:0.997	"superfamily_Nickel-iron hydrogenase small subunit,HMMPfam_Oxidored_q6"	"superfamily_Nickel-iron hydrogenase small subunit,HMMPfam_Oxidored_q6,PatternScan_COMPLEX1_20K"	-	no_errors
PCSK4	54760	broad.mit.edu	36	19	1439242	1439242	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	1439242	1439242	A	C	SNP	PCSK4	NM_017573	human	genbank	54_36p	-1	validated	missense	c.332	p.V111G	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
REEP6	92840	broad.mit.edu	36	19	1447361	1447361	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	1447361	1447361	G	T	SNP	REEP6	ENST00000395484	human	ensembl	54_36p	1	known	missense	c.628	p.A210S	0.2	NULL	NULL	-	no_errors
MBD3	53615	broad.mit.edu	36	19	1529479	1529479	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	1529479	1529479	C	G	SNP	MBD3	NM_003926	human	genbank	54_36p	-1	reviewed	missense	c.736	p.D246H	1	NULL	"HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391"	-	no_errors
ATP8B3	148229	broad.mit.edu	36	19	1740034	1740035	+	Missense_Mutation	DNP	GA	GA	CC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	1740034	1740035	GA	CC	DNP	ATP8B3	NM_138813	human	genbank	54_36p	-1	reviewed	missense	c.2931_2930	p.F977W	0.990:0.952	superfamily_SSF56784	"superfamily_SSF81653,HMMPfam_E1-E2_ATPase,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3,PatternScan_EF_HAND_1"	-	no_errors
FAM108A1	81926	broad.mit.edu	36	19	1828545	1828545	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	1828545	1828545	G	A	SNP	FAM108A1	NM_031213	human	genbank	54_36p	-1	validated	silent	c.822	p.P274	1	"HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases"	"PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2"	-	no_errors
FAM108A1	81926	broad.mit.edu	36	19	1831007	1831007	+	Missense_Mutation	SNP	T	T	G	rs7248295	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	1831007	1831007	T	G	SNP	FAM108A1	NM_031213	human	genbank	54_36p	-1	validated	missense	c.593	p.Y198S	1	"HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases"	"HMMPfam_Abhydrolase_2,PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases"	-	no_errors
DOT1L	84444	broad.mit.edu	36	19	2161819	2161821	+	Missense_Mutation	TNP	AGA	AGA	CCG	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	AGA	AGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	2161819	2161821	AGA	CCG	TNP	DOT1L	NM_032482	human	genbank	54_36p	1	validated	missense	c.1316_1318	p.Q439PA	1.000:0.999:1.000	NULL	"superfamily_SSF53335,HMMPfam_DOT1,HMMPfam_AT_hook,HMMSmart_AT_hook"	-	no_errors
TMPRSS9	360200	broad.mit.edu	36	19	2352990	2352990	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	2352990	2352990	T	G	SNP	TMPRSS9	NM_182973	human	genbank	54_36p	1	provisional	missense	c.430	p.L144V	0	NULL	"HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
LMNB2	84823	broad.mit.edu	36	19	2383480	2383480	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	2383480	2383480	C	T	SNP	LMNB2	NM_032737	human	genbank	54_36p	-1	reviewed	silent	c.1464	p.L488	0.08	"superfamily_SSF74853,HMMPfam_IF_tail"	"HMMPfam_Filament,PatternScan_IF,superfamily_SSF74853,HMMPfam_IF_tail"	-	no_errors
DIRAS1	148252	broad.mit.edu	36	19	2668666	2668666	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	2668666	2668666	C	T	SNP	DIRAS1	NM_145173	human	genbank	54_36p	-1	validated	missense	c.139	p.V47M	1	"superfamily_SSF52540,HMMSmart_RAS,HMMPfam_Ras"	"superfamily_SSF52540,HMMSmart_RAS,HMMPfam_Ras"	-	no_errors
ZNF57	126295	broad.mit.edu	36	19	2868849	2868849	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	2868849	2868849	T	G	SNP	ZNF57	NM_173480	human	genbank	54_36p	1	validated	missense	c.1230	p.H410Q	0.1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF77	58492	broad.mit.edu	36	19	2884602	2884602	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	2884602	2884602	C	T	SNP	ZNF77	NM_021217	human	genbank	54_36p	-1	validated	missense	c.1523	p.R508H	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
TLE2	7089	broad.mit.edu	36	19	2979803	2979804	+	Splice_Site	INS	-	G	-	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	2979803	2979804	-	G	INS	TLE2	NM_003260	human	genbank	54_36p	-1	validated	splice_site_ins	c.25-3_25-2	e2-2	1.000:0.942	-	-	-	no_errors
GNA11	2767	broad.mit.edu	36	19	3070021	3070021	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	3070021	3070021	C	A	SNP	GNA11	NM_002067	human	genbank	54_36p	1	validated	nonsense	c.705	p.Y235*	1	"superfamily_SSF52540,HMMPfam_G-alpha"	"superfamily_SSF52540,HMMPfam_G-alpha,superfamily_Transducn_insert"	-	no_errors
TBXA2R	6915	broad.mit.edu	36	19	3546862	3546863	+	Missense_Mutation	DNP	TG	TG	CA	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	3546862	3546863	TG	CA	DNP	TBXA2R	NM_001060	human	genbank	54_36p	-1	validated	missense	c.856_855	p.T286A	0.012:0.007	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PIP5K1C	23396	broad.mit.edu	36	19	3596970	3596970	+	Splice_Site	SNP	A	A	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	3596970	3596970	A	G	SNP	PIP5K1C	NM_012398	human	genbank	54_36p	-1	reviewed	splice_site	c.1345+2	e11+2	1	-	-	-	no_errors
TJP3	27134	broad.mit.edu	36	19	3686866	3686866	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	3686866	3686866	G	T	SNP	TJP3	NM_014428	human	genbank	54_36p	1	provisional	splice_site	c.1160-1	e9-1	0.11	-	-	-	no_errors
MRPL54	116541	broad.mit.edu	36	19	3713782	3713782	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	3713782	3713782	A	T	SNP	MRPL54	NM_172251	human	genbank	54_36p	1	reviewed	silent	c.84	p.G28	0	NULL	HMMPfam_Ribosomal_L37	-	no_errors
MAP2K2	5605	broad.mit.edu	36	19	4068604	4068604	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	4068604	4068604	T	A	SNP	MAP2K2	NM_030662	human	genbank	54_36p	-1	reviewed	missense	c.116	p.K39M	1	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
SIRT6	51548	broad.mit.edu	36	19	4125893	4125893	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	4125893	4125893	G	A	SNP	SIRT6	NM_016539	human	genbank	54_36p	-1	reviewed	silent	c.789	p.T263	0.93	superfamily_DHS-like NAD/FAD-binding domain	"superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2"	-	no_errors
ANKRD24	170961	broad.mit.edu	36	19	4151140	4151140	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	4151140	4151140	C	A	SNP	ANKRD24	NM_133475	human	genbank	54_36p	1	provisional	silent	c.315	p.G105	0.81	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
EBI3	10148	broad.mit.edu	36	19	4180575	4180575	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	4180575	4180575	G	C	SNP	EBI3	NM_005755	human	genbank	54_36p	1	reviewed	missense	c.28	p.V10L	0.05	NULL	"superfamily_FN_III-like,HMMSmart_FN3,PatternScan_HEMATOPO_REC_L_F3,HMMPfam_fn3"	-	no_errors
CCDC94	55702	broad.mit.edu	36	19	4202129	4202129	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	4202129	4202129	C	T	SNP	CCDC94	NM_018074	human	genbank	54_36p	1	provisional	silent	c.231	p.Y77	1	HMMPfam_DUF572	HMMPfam_DUF572	-	no_errors
MPND	84954	broad.mit.edu	36	19	4306115	4306115	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	4306115	4306115	T	G	SNP	MPND	NM_032868	human	genbank	54_36p	1	provisional	missense	c.941	p.F314C	1	"superfamily_JAB1/MPN domain,HMMPfam_Mov34"	"superfamily_JAB1/MPN domain,HMMPfam_Mov34"	-	no_errors
CHAF1A	10036	broad.mit.edu	36	19	4379827	4379827	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	4379827	4379827	G	A	SNP	CHAF1A	NM_005483	human	genbank	54_36p	1	validated	missense	c.1544	p.R515Q	0.9	NULL	NULL	-	no_errors
FEM1A	100133070	broad.mit.edu	36	19	4744804	4744804	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	4744804	4744804	C	G	SNP	LOC100133070	XM_001719147	human	genbank	54_36p	-1	model	missense	c.172	p.G58R	1	NULL	NULL	-	no_errors
TICAM1	148022	broad.mit.edu	36	19	4768712	4768712	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	4768712	4768712	C	T	SNP	TICAM1	NM_182919	human	genbank	54_36p	-1	validated	silent	c.678	p.G226	0.74	NULL	NULL	-	no_errors
PTPRS	5802	broad.mit.edu	36	19	5165445	5165445	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	5165445	5165445	C	A	SNP	PTPRS	NM_002850	human	genbank	54_36p	-1	reviewed	missense	c.4541	p.G1514V	1	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase"	###############################################################################################################################################################################################################################################################	-	no_errors
PTPRS	5802	broad.mit.edu	36	19	5216025	5216025	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	5216025	5216025	G	A	SNP	PTPRS	NM_002850	human	genbank	54_36p	-1	reviewed	nonsense	c.562	p.R188*	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	###############################################################################################################################################################################################################################################################	-	no_errors
SAFB2	9667	broad.mit.edu	36	19	5567291	5567291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	5567291	5567291	C	T	SNP	SAFB2	NM_014649	human	genbank	54_36p	-1	validated	missense	c.395	p.S132N	1	NULL	"superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
SAFB	6294	broad.mit.edu	36	19	5619291	5619291	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	5619291	5619291	C	G	SNP	SAFB	NM_002967	human	genbank	54_36p	1	reviewed	missense	c.2737	p.R913G	1	NULL	"superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1"	-	no_errors
TMEM146	257062	broad.mit.edu	36	19	5723900	5723900	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	5723900	5723900	C	G	SNP	TMEM146	NM_152784	human	genbank	54_36p	1	validated	missense	c.1865	p.A622G	0	NULL	NULL	-	no_errors
RANBP3	8498	broad.mit.edu	36	19	5872277	5872277	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	5872277	5872277	C	T	SNP	RANBP3	NM_007322	human	genbank	54_36p	-1	reviewed	missense	c.1265	p.G422D	1	"superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1"	"superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1"	-	no_errors
RANBP3	8498	broad.mit.edu	36	19	5884475	5884475	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	5884475	5884475	C	A	SNP	RANBP3	NM_007322	human	genbank	54_36p	-1	reviewed	missense	c.422	p.G141V	1	NULL	"HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like"	-	no_errors
RFX2	5990	broad.mit.edu	36	19	5953737	5953737	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	5953737	5953737	C	G	SNP	RFX2	NM_000635	human	genbank	54_36p	-1	reviewed	missense	c.1645	p.V549L	1	NULL	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_Winged helix DNA-binding domain"	-	no_errors
ACSBG2	81616	broad.mit.edu	36	19	6133869	6133869	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6133869	6133869	C	T	SNP	ACSBG2	NM_030924	human	genbank	54_36p	1	validated	silent	c.1014	p.S338	0	"superfamily_SSF56801,HMMPfam_AMP-binding"	"superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
CLPP	8192	broad.mit.edu	36	19	6315626	6315626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	6315626	6315626	C	T	SNP	CLPP	NM_006012	human	genbank	54_36p	1	reviewed	silent	c.531	p.I177	1	"superfamily_SSF52096,HMMPfam_CLP_protease,PatternScan_CLP_PROTEASE_HIS"	"superfamily_SSF52096,HMMPfam_CLP_protease,PatternScan_CLP_PROTEASE_SER,PatternScan_CLP_PROTEASE_HIS"	-	no_errors
PSPN	5623	broad.mit.edu	36	19	6326765	6326765	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	6326765	6326765	G	A	SNP	PSPN	NM_004158	human	genbank	54_36p	-1	reviewed	silent	c.96	p.A32	0	NULL	"PatternScan_TGF_BETA_1,HMMPfam_TGF_beta,superfamily_SSF57501,HMMSmart_TGFB"	-	no_errors
SLC25A23	79085	broad.mit.edu	36	19	6405349	6405349	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6405349	6405349	G	T	SNP	SLC25A23	NM_024103	human	genbank	54_36p	-1	validated	missense	c.780	p.F260L	1	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	-	no_errors
SLC25A23	79085	broad.mit.edu	36	19	6407446	6407446	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	6407446	6407446	G	C	SNP	SLC25A23	NM_024103	human	genbank	54_36p	-1	validated	missense	c.468	p.F156L	1	superfamily_EF-hand	"superfamily_Mitochondrial carrier,HMMSmart_SM00054,HMMPfam_Mito_carr,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand"	-	no_errors
DENND1C	79958	broad.mit.edu	36	19	6418577	6418577	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6418577	6418577	G	A	SNP	DENND1C	NM_024898	human	genbank	54_36p	-1	validated	nonsense	c.2344	p.Q782*	0	NULL	"HMMPfam_uDENN,HMMSmart_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN"	-	no_errors
DENND1C	79958	broad.mit.edu	36	19	6418619	6418619	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6418619	6418619	G	A	SNP	DENND1C	NM_024898	human	genbank	54_36p	-1	validated	missense	c.2302	p.P768S	0	NULL	"HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN"	-	no_errors
TUBB4	10382	broad.mit.edu	36	19	6446297	6446297	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6446297	6446297	C	T	SNP	TUBB4	NM_006087	human	genbank	54_36p	-1	provisional	missense	c.1213	p.E405K	1	superfamily_Tubulin C-terminal domain-like	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C"	-	no_errors
TUBB4	10382	broad.mit.edu	36	19	6446339	6446339	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6446339	6446339	G	A	SNP	TUBB4	NM_006087	human	genbank	54_36p	-1	provisional	missense	c.1171	p.R391C	1	superfamily_Tubulin C-terminal domain-like	"HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN_B_AUTOREG,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like"	-	no_errors
TNFSF9	8744	broad.mit.edu	36	19	6485682	6485682	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	6485682	6485682	C	G	SNP	TNFSF9	NM_003811	human	genbank	54_36p	1	reviewed	missense	c.370	p.L124V	0	"superfamily_TNF_like,HMMSmart_TNF,HMMPfam_TNF"	"superfamily_TNF_like,HMMSmart_TNF,HMMPfam_TNF,PatternScan_TNF_1"	-	no_errors
TNFSF14	8740	broad.mit.edu	36	19	6616098	6616098	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	6616098	6616098	C	T	SNP	TNFSF14	NM_003807	human	genbank	54_36p	-1	reviewed	missense	c.562	p.G188R	0	"superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF"	"superfamily_TNF-like,HMMSmart_SM00207,HMMPfam_TNF"	-	no_errors
TRIP10	9322	broad.mit.edu	36	19	6695700	6695700	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6695700	6695700	G	A	SNP	TRIP10	NM_004240	human	genbank	54_36p	1	validated	missense	c.778	p.D260N	1	NULL	"HMMPfam_FCH,HMMSmart_SM00055,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
EMR1	2015	broad.mit.edu	36	19	6888605	6888605	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	6888605	6888605	C	A	SNP	EMR1	NM_001974	human	genbank	54_36p	1	reviewed	silent	c.2601	p.S867	0	superfamily_Family A G protein-coupled receptor-like	###############################################################################################################################################################################################################################################################	-	no_errors
INSR	3643	broad.mit.edu	36	19	7068323	7068323	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	7068323	7068323	A	G	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	missense	c.3893	p.F1298S	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220"	###############################################################################################################################################################################################################################################################	-	no_errors
INSR	3643	broad.mit.edu	36	19	7073978	7073978	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	7073978	7073978	G	T	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	missense	c.3281	p.S1094Y	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)"	###############################################################################################################################################################################################################################################################	-	no_errors
INSR	3643	broad.mit.edu	36	19	7076412	7076412	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7076412	7076412	T	A	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	missense	c.3140	p.K1047M	1	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	###############################################################################################################################################################################################################################################################	-	no_errors
INSR	3643	broad.mit.edu	36	19	7094008	7094008	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7094008	7094008	G	A	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	silent	c.2361	p.S787	0.61	"HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
INSR	3643	broad.mit.edu	36	19	7103753	7103753	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	7103753	7103753	C	G	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	missense	c.2215	p.V739L	1	"HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
INSR	3643	broad.mit.edu	36	19	7218483	7218483	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7218483	7218483	G	T	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	missense	c.525	p.N175K	1	superfamily_L domain-like	###############################################################################################################################################################################################################################################################	-	no_errors
ARHGEF18	23370	broad.mit.edu	36	19	7412889	7412889	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	7412889	7412889	C	T	SNP	ARHGEF18	NM_015318	human	genbank	54_36p	1	reviewed	silent	c.273	p.Y91	0	superfamily_DH-domain	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
PEX11G	92960	broad.mit.edu	36	19	7456868	7456868	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	7456868	7456868	C	G	SNP	PEX11G	NM_080662	human	genbank	54_36p	-1	provisional	silent	c.105	p.L35	0.83	HMMPfam_PEX11	HMMPfam_PEX11	-	no_errors
PNPLA6	10908	broad.mit.edu	36	19	7527564	7527564	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7527564	7527564	C	T	SNP	PNPLA6	NM_006702	human	genbank	54_36p	1	validated	silent	c.3120	p.N1040	0.99	"superfamily_Acyl_Trfase/lysoPlipase,HMMPfam_Patatin"	"superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,superfamily_Acyl_Trfase/lysoPlipase,HMMPfam_Patatin,PatternScan_UPF0028"	-	no_errors
RETN	56729	broad.mit.edu	36	19	7640747	7640747	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7640747	7640747	C	T	SNP	RETN	NM_020415	human	genbank	54_36p	1	reviewed	silent	c.159	p.S53	0	"HMMPfam_Resistin,superfamily_Resistin"	"HMMPfam_Resistin,superfamily_Resistin"	-	no_errors
CD209	30835	broad.mit.edu	36	19	7713996	7713996	+	Missense_Mutation	SNP	C	C	T	rs11465393	"by-frequency,by-hapmap"	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	7713996	7713996	C	T	SNP	CD209	NM_021155	human	genbank	54_36p	-1	reviewed	missense	c.1144	p.A382T	0	NULL	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
EVI5L	115704	broad.mit.edu	36	19	7818660	7818660	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7818660	7818660	C	T	SNP	EVI5L	NM_145245	human	genbank	54_36p	1	provisional	silent	c.180	p.G60	0.98	NULL	"superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC"	-	no_errors
CTXN1	404217	broad.mit.edu	36	19	7896283	7896283	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7896283	7896283	C	G	SNP	CTXN1	NM_206833	human	genbank	54_36p	-1	validated	silent	c.141	p.V47	1	NULL	NULL	-	no_errors
TIMM44	10469	broad.mit.edu	36	19	7898971	7898971	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	7898971	7898971	G	A	SNP	TIMM44	NM_006351	human	genbank	54_36p	-1	provisional	silent	c.1119	p.D373	1	HMMPfam_Tim44	HMMPfam_Tim44	-	no_errors
TIMM44	10469	broad.mit.edu	36	19	7903585	7903585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	7903585	7903585	C	T	SNP	TIMM44	NM_006351	human	genbank	54_36p	-1	provisional	missense	c.914	p.R305Q	1	HMMPfam_Tim44	HMMPfam_Tim44	-	no_errors
FBN3	84467	broad.mit.edu	36	19	8044141	8044141	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8044141	8044141	G	T	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	missense	c.7743	p.S2581R	0.79	"PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181"	"HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain"	-	no_errors
FBN3	84467	broad.mit.edu	36	19	8051997	8051997	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	8051997	8051997	T	C	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	missense	c.7343	p.D2448G	1	"HMMSmart_SM00179,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA"	"PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin"	-	no_errors
LASS4	79603	broad.mit.edu	36	19	8221966	8221966	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8221966	8221966	G	A	SNP	LASS4	NM_024552	human	genbank	54_36p	1	validated	silent	c.6	p.L2	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00724,HMMPfam_TRAM_LAG1_CLN8"	-	no_errors
NDUFA7	4701	broad.mit.edu	36	19	8287481	8287482	+	Missense_Mutation	DNP	GG	GG	AA	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8287481	8287482	GG	AA	DNP	NDUFA7	NM_005001	human	genbank	54_36p	-1	validated	missense	c.150_149	p.S50F	0.997:1.000	HMMPfam_CI-B14_5a	HMMPfam_CI-B14_5a	-	no_errors
ANGPTL4	51129	broad.mit.edu	36	19	8342379	8342379	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8342379	8342379	G	T	SNP	ANGPTL4	NM_139314	human	genbank	54_36p	1	reviewed	missense	c.1012	p.D338Y	0.6	"superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C"	"superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN"	-	no_errors
RAB11B	9230	broad.mit.edu	36	19	8373134	8373134	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8373134	8373134	T	C	SNP	RAB11B	NM_004218	human	genbank	54_36p	1	validated	missense	c.401	p.V134A	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
MARCH2	51257	broad.mit.edu	36	19	8409305	8409305	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8409305	8409305	G	T	SNP	MARCH2	NM_001005415	human	genbank	54_36p	1	validated	nonsense	c.616	p.E206*	1	NULL	"superfamily_SSF57850,HMMSmart_RINGv,HMMPfam_zf-C3HC4"	-	no_errors
HNRNPM	4670	broad.mit.edu	36	19	8456730	8456731	+	Missense_Mutation	DNP	GC	GC	TT	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8456730	8456731	GC	TT	DNP	HNRNPM	NM_005968	human	genbank	54_36p	1	validated	missense	c.1418_1419	p.G473V	1.000:1.000	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8838643	8838643	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	8838643	8838643	T	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.42202	p.T14068A	0.99	superfamily_SEA domain	"PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8872463	8872463	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	19	8872463	8872463	C	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.38770	p.D12924N	0.96	"HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain"	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8879494	8879494	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	8879494	8879494	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.37680	p.D12560E	0.03	"HMMPfam_SEA,superfamily_SEA domain"	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8918662	8918662	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8918662	8918662	G	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.29784	p.S9928	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8921436	8921436	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8921436	8921436	G	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.27010	p.P9004A	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8927447	8927447	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	8927447	8927447	G	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.20999	p.S7000C	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8935946	8935946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	8935946	8935946	G	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.12500	p.A4167G	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8938660	8938660	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	8938660	8938660	C	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.9786	p.L3262	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8943391	8943391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	8943391	8943391	C	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.9424	p.E3142K	0.01	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8944768	8944768	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	8944768	8944768	C	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.8047	p.E2683K	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8946170	8946170	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	8946170	8946170	T	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	silent	c.6645	p.T2215	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8947617	8947617	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	8947617	8947617	G	T	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.5198	p.S1733Y	0.01	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8947728	8947728	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	8947728	8947728	G	C	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	nonsense	c.5087	p.S1696*	0	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8948663	8948663	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	8948663	8948663	C	A	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.4152	p.W1384C	0.02	NULL	"HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain"	-	no_errors
MUC16	94025	broad.mit.edu	36	19	8949834	8949848	+	In_Frame_Del	DEL	GCAGAGAGAGAAGTG	-	GCAGAGAGAGAAGTG	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	GCAGAGAGAGAAGTG	GCAGAGAGAGAAGTG	-	-	GCAGAGAGAGAAGTG	GCAGAGAGAGAAGTG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	8949834	8949848	GCAGAGAGAGAAGTG	-	DEL	MUC16	NM_024690	human	genbank	54_36p	-1	validated	in_frame_del	c.2981_2967	p.SLSAT991in_frame_del	0.002:0.003:0.011:0.014:0.019:0.021:0.027:0.031:0.032:0.029:0.020:0.003:0.001:0.000:0.001	NULL	"PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA"	"(deletion:cds_exon[8943340,8952814])"	no_errors
OR7G1	125962	broad.mit.edu	36	19	9086745	9086745	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9086745	9086745	C	G	SNP	OR7G1	NM_001005192	human	genbank	54_36p	-1	provisional	missense	c.695	p.R232T	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR7D4	125958	broad.mit.edu	36	19	9185997	9185997	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9185997	9185997	C	T	SNP	OR7D4	NM_001005191	human	genbank	54_36p	-1	provisional	missense	c.517	p.E173K	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR7D4	125958	broad.mit.edu	36	19	9186271	9186271	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9186271	9186271	C	T	SNP	OR7D4	NM_001005191	human	genbank	54_36p	-1	provisional	missense	c.243	p.M81I	0.86	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR7E24	26648	broad.mit.edu	36	19	9222964	9222964	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	9222964	9222964	C	T	SNP	OR7E24	NM_001079935	human	genbank	54_36p	1	provisional	missense	c.245	p.S82F	0.18	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
ZNF266	10781	broad.mit.edu	36	19	9385703	9385703	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9385703	9385703	C	T	SNP	ZNF266	NM_006631	human	genbank	54_36p	-1	validated	missense	c.898	p.E300K	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF560	147741	broad.mit.edu	36	19	9442068	9442068	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9442068	9442068	C	A	SNP	ZNF560	NM_152476	human	genbank	54_36p	-1	validated	missense	c.448	p.G150C	0.98	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF560	147741	broad.mit.edu	36	19	9442977	9442977	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	9442977	9442977	G	A	SNP	ZNF560	NM_152476	human	genbank	54_36p	-1	validated	nonsense	c.316	p.Q106*	0	superfamily_Krueppel-associated_box	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF121	7675	broad.mit.edu	36	19	9538491	9538491	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	9538491	9538491	G	A	SNP	ZNF121	NM_001008727	human	genbank	54_36p	-1	validated	nonsense	c.298	p.Q100*	0	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF121	7675	broad.mit.edu	36	19	9538501	9538501	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9538501	9538501	G	C	SNP	ZNF121	NM_001008727	human	genbank	54_36p	-1	validated	silent	c.288	p.A96	0	superfamily_SSF57667	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF846	162993	broad.mit.edu	36	19	9729185	9729185	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9729185	9729185	T	C	SNP	ZNF846	NM_001077624	human	genbank	54_36p	-1	validated	missense	c.1568	p.K523R	0.13	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00614,HMMSmart_SM00355,HMMPfam_zf-C2H2"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,HMMSmart_SM00614"	-	no_errors
OLFM2	93145	broad.mit.edu	36	19	9826216	9826216	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	9826216	9826216	G	C	SNP	OLFM2	NM_058164	human	genbank	54_36p	-1	provisional	silent	c.1011	p.T337	1	"HMMPfam_OLF,HMMSmart_OLF"	"HMMPfam_OLF,HMMSmart_OLF"	-	no_errors
COL5A3	50509	broad.mit.edu	36	19	9945475	9945475	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	9945475	9945475	C	A	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.3569	p.G1190V	0.99	HMMPfam_Collagen	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI"	-	no_errors
COL5A3	50509	broad.mit.edu	36	19	9945882	9945882	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9945882	9945882	C	T	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.3469	p.G1157R	1	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
COL5A3	50509	broad.mit.edu	36	19	9951669	9951669	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9951669	9951669	C	A	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	splice_site	c.2658+1	e36+1	1	-	-	-	no_errors
COL5A3	50509	broad.mit.edu	36	19	9952504	9952504	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	9952504	9952504	G	A	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.2537	p.A846V	1	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
COL5A3	50509	broad.mit.edu	36	19	9967274	9967274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9967274	9967274	C	T	SNP	COL5A3	NM_015719	human	genbank	54_36p	-1	reviewed	missense	c.1553	p.G518E	0.98	HMMPfam_Collagen	"HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	-	no_errors
RDH8	50700	broad.mit.edu	36	19	9985252	9985252	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	9985252	9985252	C	G	SNP	RDH8	NM_015725	human	genbank	54_36p	1	validated	missense	c.79	p.H27D	0.94	"superfamily_NAD(P)-bd,HMMPfam_adh_short"	"superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT"	-	no_errors
RDH8	50700	broad.mit.edu	36	19	9993084	9993084	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	9993084	9993084	C	T	SNP	RDH8	NM_015725	human	genbank	54_36p	1	validated	silent	c.690	p.S230	0	superfamily_NAD(P)-bd	"HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd"	-	no_errors
P2RY11	5032	broad.mit.edu	36	19	10086200	10086200	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10086200	10086200	A	C	SNP	P2RY11	NM_002566	human	genbank	54_36p	1	reviewed	missense	c.911	p.Q304P	0.9	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
DNMT1	1786	broad.mit.edu	36	19	10126610	10126610	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10126610	10126610	T	C	SNP	DNMT1	NM_001379	human	genbank	54_36p	-1	reviewed	missense	c.1567	p.T523A	0.97	NULL	"HMMPfam_DMAP_binding,HMMPfam_zf-CXXC,HMMPfam_BAH,HMMSmart_SM00439,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2"	-	no_errors
MRPL4	51073	broad.mit.edu	36	19	10231467	10231473	+	Frame_Shift_Del	DEL	CGGCCAC	-	CGGCCAC	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	CGGCCAC	CGGCCAC	-	-	CGGCCAC	CGGCCAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	10231467	10231473	CGGCCAC	-	DEL	MRPL4	NM_015956	human	genbank	54_36p	1	reviewed	frame_shift_del	c.914_920	p.A306fs	0.000:0.001:0.001:0.001:0.000:0.001:0.005	NULL	"superfamily_Ribosomal protein L4,HMMPfam_Ribosomal_L4"	"(deletion:cds_exon[10231293,10231489])"	no_errors
ICAM1	3383	broad.mit.edu	36	19	10256085	10256085	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	10256085	10256085	C	T	SNP	ICAM1	NM_000201	human	genbank	54_36p	1	reviewed	missense	c.932	p.P311L	0.15	superfamily_Immunoglobulin	"HMMPfam_ICAM_N,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
ZGLP1	100125288	broad.mit.edu	36	19	10276818	10276818	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10276818	10276818	C	G	SNP	GLP-1	NM_001103167	human	genbank	54_36p	-1	validated	missense	c.765	p.K255N	0	NULL	"PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716,HMMSmart_ZnF_GATA,HMMPfam_GATA"	-	no_errors
RAVER1	125950	broad.mit.edu	36	19	10292538	10292538	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10292538	10292538	C	T	SNP	RAVER1	NM_133452	human	genbank	54_36p	-1	validated	silent	c.1614	p.L538	0.97	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
RAVER1	125950	broad.mit.edu	36	19	10295238	10295238	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10295238	10295238	G	A	SNP	RAVER1	NM_133452	human	genbank	54_36p	-1	validated	missense	c.812	p.A271V	1	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
TYK2	7297	broad.mit.edu	36	19	10324642	10324643	+	Missense_Mutation	DNP	AC	AC	GG	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10324642	10324643	AC	GG	DNP	TYK2	NM_003331	human	genbank	54_36p	-1	reviewed	missense	c.3160_3159	p.EY1053DH	0.998:0.861	"superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc"	"PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550,HMMSmart_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
TYK2	7297	broad.mit.edu	36	19	10334303	10334303	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10334303	10334303	G	A	SNP	TYK2	NM_003331	human	genbank	54_36p	-1	reviewed	silent	c.1398	p.P466	0	"HMMSmart_SH2,superfamily_SSF55550"	"HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_FERM_1,PatternScan_FERM_2,HMMSmart_B41,superfamily_SSF55550"	-	no_errors
CDC37	11140	broad.mit.edu	36	19	10367867	10367867	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10367867	10367867	G	A	SNP	CDC37	NM_007065	human	genbank	54_36p	-1	reviewed	missense	c.115	p.R39C	1	HMMPfam_CDC37_N	"HMMPfam_CDC37_N,HMMPfam_CDC37_M,superfamily_Hsp90 co-chaperone CDC37,HMMPfam_CDC37_C"	-	no_errors
PDE4A	5141	broad.mit.edu	36	19	10431271	10431271	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10431271	10431271	G	A	SNP	PDE4A	NM_006202	human	genbank	54_36p	1	validated	missense	c.484	p.E162K	1	superfamily_HD-domain/PDEase-like	"superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I"	-	no_errors
KEAP1	9817	broad.mit.edu	36	19	10471143	10471143	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10471143	10471143	G	C	SNP	KEAP1	NM_012289	human	genbank	54_36p	-1	reviewed	missense	c.567	p.N189K	1	HMMPfam_BACK	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	-	no_errors
KEAP1	9817	broad.mit.edu	36	19	10471575	10471575	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10471575	10471575	G	T	SNP	KEAP1	NM_012289	human	genbank	54_36p	-1	reviewed	silent	c.135	p.S45	0.98	NULL	"HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB"	-	no_errors
S1PR5	53637	broad.mit.edu	36	19	10485568	10485568	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10485568	10485568	C	T	SNP	S1PR5	NM_030760	human	genbank	54_36p	-1	validated	missense	c.1120	p.D374N	0.95	NULL	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CDKN2D	1032	broad.mit.edu	36	19	10538786	10538787	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10538786	10538787	CC	AG	DNP	CDKN2D	NM_001800	human	genbank	54_36p	-1	reviewed	missense	c.449_448	p.G150L	0.029:0.032	"superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
SLC44A2	57153	broad.mit.edu	36	19	10607124	10607124	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10607124	10607124	A	G	SNP	SLC44A2	NM_020428	human	genbank	54_36p	1	validated	missense	c.1166	p.N389S	1	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
ILF3	3609	broad.mit.edu	36	19	10650834	10650834	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10650834	10650834	C	G	SNP	ILF3	NM_012218	human	genbank	54_36p	1	reviewed	missense	c.713	p.T238S	1	"HMMSmart_SM00572,HMMPfam_DZF"	"HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358"	-	no_errors
ILF3	3609	broad.mit.edu	36	19	10653757	10653757	+	Silent	SNP	G	G	A	rs35968299	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	10653757	10653757	G	A	SNP	ILF3	NM_012218	human	genbank	54_36p	1	reviewed	silent	c.1269	p.Q423	1	"HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like"	"HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_DZF,HMMSmart_SM00572,superfamily_dsRNA-binding domain-like"	-	no_errors
ILF3	3609	broad.mit.edu	36	19	10654341	10654341	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	10654341	10654341	C	T	SNP	ILF3	NM_012218	human	genbank	54_36p	1	reviewed	silent	c.1509	p.S503	0	NULL	"HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_DZF,HMMSmart_SM00572,superfamily_dsRNA-binding domain-like"	-	no_errors
DNM2	1785	broad.mit.edu	36	19	10758342	10758342	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	10758342	10758342	C	T	SNP	DNM2	NM_001005360	human	genbank	54_36p	1	reviewed	missense	c.952	p.R318W	1	HMMPfam_Dynamin_M	"HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302"	-	no_errors
DNM2	1785	broad.mit.edu	36	19	10769071	10769071	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10769071	10769071	C	A	SNP	DNM2	NM_001005361	human	genbank	54_36p	1	reviewed	silent	c.1212	p.T404	1	HMMPfam_Dynamin_M	"HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_SM00053,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302,PatternScan_DYNAMIN,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DNM2	1785	broad.mit.edu	36	19	10791733	10791734	+	Missense_Mutation	DNP	GC	GC	TG	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	10791733	10791734	GC	TG	DNP	DNM2	NM_001005360	human	genbank	54_36p	1	reviewed	missense	c.1749_1750	p.KH583ND	1.000:1.000	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_SM00053,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302,PatternScan_DYNAMIN,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SMARCA4	6597	broad.mit.edu	36	19	10966512	10966512	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10966512	10966512	C	A	SNP	SMARCA4	NM_003072	human	genbank	54_36p	1	reviewed	silent	c.1428	p.L476	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HSA,HMMSmart_SM00573"	###############################################################################################################################################################################################################################################################	-	no_errors
SMARCA4	6597	broad.mit.edu	36	19	10979635	10979635	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	10979635	10979635	A	G	SNP	SMARCA4	NM_003072	human	genbank	54_36p	1	reviewed	missense	c.2059	p.K687E	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	###############################################################################################################################################################################################################################################################	-	no_errors
SMARCA4	6597	broad.mit.edu	36	19	10995230	10995230	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	10995230	10995230	C	T	SNP	SMARCA4	NM_003072	human	genbank	54_36p	1	reviewed	missense	c.2896	p.R966W	1	HMMPfam_SNF2_N	###############################################################################################################################################################################################################################################################	-	no_errors
SMARCA4	6597	broad.mit.edu	36	19	10999568	10999568	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	10999568	10999568	C	T	SNP	SMARCA4	NM_003072	human	genbank	54_36p	1	reviewed	silent	c.3324	p.L1108	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	###############################################################################################################################################################################################################################################################	-	no_errors
SMARCA4	6597	broad.mit.edu	36	19	11005525	11005526	+	Missense_Mutation	DNP	AG	AG	CA	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	11005525	11005526	AG	CA	DNP	SMARCA4	NM_003072	human	genbank	54_36p	1	reviewed	missense	c.3857_3858	p.E1286A	1.000:1.000	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
LDLR	3949	broad.mit.edu	36	19	11079140	11079140	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11079140	11079140	A	G	SNP	LDLR	NM_000527	human	genbank	54_36p	1	reviewed	missense	c.890	p.N297S	0.97	"superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1"	###############################################################################################################################################################################################################################################################	-	no_errors
DOCK6	57572	broad.mit.edu	36	19	11172116	11172116	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	11172116	11172116	G	T	SNP	DOCK6	NM_020812	human	genbank	54_36p	-1	validated	missense	c.5969	p.A1990D	1	HMMPfam_Ded_cyto	HMMPfam_Ded_cyto	-	no_errors
TSPAN16	26526	broad.mit.edu	36	19	11269889	11269889	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	11269889	11269889	C	T	SNP	TSPAN16	NM_012466	human	genbank	54_36p	1	reviewed	silent	c.141	p.L47	0.04	HMMPfam_Tetraspannin	"PatternScan_TM4_1,HMMPfam_Tetraspannin,superfamily_Tetraspanin"	-	no_errors
RAB3D	9545	broad.mit.edu	36	19	11307127	11307127	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11307127	11307127	G	A	SNP	RAB3D	NM_004283	human	genbank	54_36p	-1	provisional	silent	c.468	p.D156	0.99	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras"	-	no_errors
CCDC159	126075	broad.mit.edu	36	19	11323591	11323591	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11323591	11323591	C	T	SNP	LOC126075	NM_001080503	human	genbank	54_36p	1	validated	silent	c.663	p.F221	1	NULL	NULL	-	no_errors
EPOR	2057	broad.mit.edu	36	19	11349790	11349790	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11349790	11349790	G	A	SNP	EPOR	NM_000121	human	genbank	54_36p	-1	reviewed	missense	c.1397	p.T466I	0.9	NULL	"superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F1"	-	no_errors
RGL3	57139	broad.mit.edu	36	19	11369184	11369184	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11369184	11369184	C	T	SNP	RGL3	NM_001035223	human	genbank	54_36p	-1	provisional	silent	c.1836	p.S612	0	"superfamily_Ubiquitin-like,HMMSmart_SM00314"	"superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMSmart_SM00314,HMMPfam_RA"	-	no_errors
CCDC151	115948	broad.mit.edu	36	19	11398566	11398566	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11398566	11398566	C	A	SNP	CCDC151	NM_145045	human	genbank	54_36p	-1	validated	missense	c.651	p.Q217H	1	NULL	NULL	-	no_errors
PRKCSH	5589	broad.mit.edu	36	19	11408013	11408013	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	11408013	11408013	C	T	SNP	PRKCSH	NM_002743	human	genbank	54_36p	1	reviewed	silent	c.75	p.L25	0.99	NULL	"HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF47473,PatternScan_EF_HAND_1,superfamily_Man6php_recept,HMMPfam_PRKCSH,PatternScan_ER_TARGET"	-	no_errors
ZNF823	55552	broad.mit.edu	36	19	11693769	11693769	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	11693769	11693769	T	C	SNP	ZNF823	NM_001080493	human	genbank	54_36p	-1	validated	missense	c.1580	p.Y527C	0.1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF441	126068	broad.mit.edu	36	19	11752822	11752822	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	11752822	11752822	G	C	SNP	ZNF441	NM_152355	human	genbank	54_36p	1	validated	missense	c.982	p.E328Q	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355"	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF441	126068	broad.mit.edu	36	19	11753139	11753139	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11753139	11753139	T	C	SNP	ZNF441	NM_152355	human	genbank	54_36p	1	validated	silent	c.1299	p.D433	0.12	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF491	126069	broad.mit.edu	36	19	11778484	11778484	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	11778484	11778484	G	T	SNP	ZNF491	NM_152356	human	genbank	54_36p	1	validated	missense	c.716	p.G239V	1	superfamily_SSF57667	"superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF20	7568	broad.mit.edu	36	19	12105390	12105390	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	12105390	12105390	C	G	SNP	ZNF20	NM_021143	human	genbank	54_36p	-1	validated	missense	c.611	p.C204S	0.86	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF564	163050	broad.mit.edu	36	19	12499453	12499453	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12499453	12499453	G	A	SNP	ZNF564	NM_144976	human	genbank	54_36p	-1	validated	nonsense	c.469	p.R157*	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	-	no_errors
ZNF791	163049	broad.mit.edu	36	19	12599844	12599844	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12599844	12599844	A	C	SNP	ZNF791	NM_153358	human	genbank	54_36p	1	validated	missense	c.501	p.K167N	0.7	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MAN2B1	4125	broad.mit.edu	36	19	12635203	12635203	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12635203	12635203	C	A	SNP	MAN2B1	NM_000528	human	genbank	54_36p	-1	reviewed	silent	c.837	p.V279	0.99	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38"	"superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C"	-	no_errors
FBXW9	84261	broad.mit.edu	36	19	12661620	12661620	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12661620	12661620	C	G	SNP	FBXW9	ENST00000254324	human	ensembl	54_36p	-1	known	missense	c.155	p.C52S	0.96	NULL	NULL	-	no_errors
ASNA1	439	broad.mit.edu	36	19	12717512	12717523	+	In_Frame_Del	DEL	TGGAGCGGGGCC	-	TGGAGCGGGGCC	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	TGGAGCGGGGCC	TGGAGCGGGGCC	-	-	TGGAGCGGGGCC	TGGAGCGGGGCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	12717512	12717523	TGGAGCGGGGCC	-	DEL	ASNA1	NM_004317	human	genbank	54_36p	1	validated	in_frame_del	c.548_559	p.ERGL184in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ArsA_ATPase"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ArsA_ATPase"	"(deletion:cds_exon[12717423,12717573])"	no_errors
ASNA1	439	broad.mit.edu	36	19	12719090	12719090	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	12719090	12719090	G	A	SNP	ASNA1	NM_004317	human	genbank	54_36p	1	validated	missense	c.689	p.R230H	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ArsA_ATPase"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ArsA_ATPase"	-	no_errors
BEST2	54831	broad.mit.edu	36	19	12727268	12727268	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12727268	12727268	C	T	SNP	BEST2	NM_017682	human	genbank	54_36p	1	reviewed	nonsense	c.712	p.Q238*	1	HMMPfam_Bestrophin	HMMPfam_Bestrophin	-	no_errors
MAST1	22983	broad.mit.edu	36	19	12810413	12810413	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	12810413	12810413	T	C	SNP	MAST1	NM_014975	human	genbank	54_36p	1	provisional	silent	c.27	p.L9	1	NULL	"PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
MAST1	22983	broad.mit.edu	36	19	12840505	12840505	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12840505	12840505	A	G	SNP	MAST1	NM_014975	human	genbank	54_36p	1	provisional	missense	c.2615	p.D872G	0.88	NULL	"HMMSmart_S_TK_X,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DUF1908,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C"	-	no_errors
FARSA	2193	broad.mit.edu	36	19	12896065	12896065	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	12896065	12896065	C	A	SNP	FARSA	NM_004461	human	genbank	54_36p	-1	validated	missense	c.1288	p.V430L	1	"superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2d"	"superfamily_Winged helix DNA-binding domain,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2d"	-	no_errors
FARSA	2193	broad.mit.edu	36	19	12900613	12900613	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	12900613	12900613	G	T	SNP	FARSA	NM_004461	human	genbank	54_36p	-1	validated	missense	c.552	p.S184R	0.26	NULL	"HMMPfam_tRNA-synt_2d,superfamily_Winged helix DNA-binding domain,superfamily_Class II aaRS and biotin synthetases"	-	no_errors
CALR	811	broad.mit.edu	36	19	12912239	12912239	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12912239	12912239	C	T	SNP	CALR	NM_004343	human	genbank	54_36p	1	reviewed	silent	c.675	p.I225	0.72	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Calreticulin,PatternScan_CALRETICULIN_REPEAT"	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Calreticulin,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,PatternScan_CALRETICULIN_REPEAT"	-	no_errors
RAD23A	5886	broad.mit.edu	36	19	12924845	12924845	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	12924845	12924845	G	C	SNP	RAD23A	NM_005053	human	genbank	54_36p	1	reviewed	missense	c.1074	p.Q358H	1	superfamily_UBA_like	"PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin,superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA,superfamily_XPC-bd,HMMSmart_STI1,HMMPfam_XPC-binding"	-	no_errors
GADD45GIP1	90480	broad.mit.edu	36	19	12926202	12926202	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	12926202	12926202	G	C	SNP	GADD45GIP1	NM_052850	human	genbank	54_36p	-1	provisional	silent	c.489	p.L163	1	HMMPfam_CR6_interact	HMMPfam_CR6_interact	-	no_errors
TRMT1	55621	broad.mit.edu	36	19	13081216	13081216	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	13081216	13081216	G	A	SNP	TRMT1	NM_017722	human	genbank	54_36p	-1	validated	missense	c.1376	p.T459I	1	HMMPfam_TRM	"HMMPfam_TRM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH"	-	no_errors
IER2	9592	broad.mit.edu	36	19	13125078	13125078	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	13125078	13125078	T	G	SNP	IER2	NM_004907	human	genbank	54_36p	1	provisional	silent	c.78	p.G26	0.92	HMMPfam_IER	HMMPfam_IER	-	no_errors
CACNA1A	773	broad.mit.edu	36	19	13202003	13202003	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	13202003	13202003	G	A	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	silent	c.5424	p.A1808	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1A	773	broad.mit.edu	36	19	13426965	13426965	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	13426965	13426965	G	A	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	nonsense	c.355	p.Q119*	1	superfamily_Voltage-gated potassium channels	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
C19orf53	28974	broad.mit.edu	36	19	13746312	13746312	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	13746312	13746312	G	C	SNP	C19orf53	NM_014047	human	genbank	54_36p	1	validated	missense	c.21	p.K7N	1	HMMPfam_DUF2462	HMMPfam_DUF2462	-	no_errors
C19orf53	28974	broad.mit.edu	36	19	13749905	13749905	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	13749905	13749905	G	A	SNP	C19orf53	NM_014047	human	genbank	54_36p	1	validated	missense	c.193	p.V65M	0.81	HMMPfam_DUF2462	HMMPfam_DUF2462	-	no_errors
ZSWIM4	65249	broad.mit.edu	36	19	13776878	13776878	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	13776878	13776878	G	T	SNP	ZSWIM4	NM_023072	human	genbank	54_36p	1	validated	missense	c.628	p.A210S	1	NULL	HMMPfam_SWIM	-	no_errors
ZSWIM4	65249	broad.mit.edu	36	19	13784970	13784971	+	Missense_Mutation	DNP	CC	CC	TG	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	13784970	13784971	CC	TG	DNP	ZSWIM4	NM_023072	human	genbank	54_36p	1	validated	missense	c.1172_1173	p.P391L	0.002:0.025	NULL	HMMPfam_SWIM	-	no_errors
C19orf57	79173	broad.mit.edu	36	19	13861722	13861722	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	13861722	13861722	C	G	SNP	C19orf57	NM_024323	human	genbank	54_36p	-1	predicted	missense	c.947	p.S316T	0	NULL	NULL	-	no_errors
C19orf57	79173	broad.mit.edu	36	19	13862229	13862229	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	13862229	13862229	A	G	SNP	C19orf57	NM_024323	human	genbank	54_36p	-1	predicted	missense	c.440	p.L147P	0	NULL	NULL	-	no_errors
RFX1	5989	broad.mit.edu	36	19	13940457	13940457	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	13940457	13940457	T	G	SNP	RFX1	NM_002918	human	genbank	54_36p	-1	reviewed	missense	c.1652	p.N551T	1	NULL	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_Winged helix DNA-binding domain"	-	no_errors
IL27RA	9466	broad.mit.edu	36	19	14023431	14023431	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	14023431	14023431	G	T	SNP	IL27RA	NM_004843	human	genbank	54_36p	1	reviewed	missense	c.1541	p.R514M	0.03	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
ASF1B	55723	broad.mit.edu	36	19	14093358	14093358	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	14093358	14093358	G	A	SNP	ASF1B	NM_018154	human	genbank	54_36p	-1	reviewed	missense	c.388	p.P130S	1	"superfamily_Anti-silence,HMMPfam_ASF1_hist_chap"	"superfamily_Anti-silence,HMMPfam_ASF1_hist_chap"	-	no_errors
LPHN1	22859	broad.mit.edu	36	19	14129845	14129845	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	14129845	14129845	G	T	SNP	LPHN1	NM_001008701	human	genbank	54_36p	-1	reviewed	missense	c.2399	p.A800D	1	"HMMPfam_GPS,HMMSmart_SM00303"	"HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin"	-	no_errors
CD97	976	broad.mit.edu	36	19	14369896	14369896	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14369896	14369896	A	T	SNP	CD97	NM_078481	human	genbank	54_36p	1	reviewed	missense	c.842	p.K281I	0	NULL	"HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
CD97	976	broad.mit.edu	36	19	14374441	14374441	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14374441	14374441	A	G	SNP	CD97	NM_078481	human	genbank	54_36p	1	reviewed	missense	c.1216	p.N406D	0	NULL	"PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
PKN1	5585	broad.mit.edu	36	19	14423650	14423650	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14423650	14423650	A	G	SNP	PKN1	NM_213560	human	genbank	54_36p	1	reviewed	missense	c.998	p.E333G	1	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	###############################################################################################################################################################################################################################################################	-	no_errors
TECR	9524	broad.mit.edu	36	19	14536086	14536086	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	14536086	14536086	G	A	SNP	GPSN2	NM_138501	human	genbank	54_36p	1	validated	missense	c.476	p.R159H	1	HMMPfam_Steroid_dh	HMMPfam_Steroid_dh	-	no_errors
NDUFB7	4713	broad.mit.edu	36	19	14538058	14538058	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14538058	14538058	C	T	SNP	NDUFB7	NM_004146	human	genbank	54_36p	-1	reviewed	missense	c.301	p.E101K	1	HMMPfam_NDUF_B7	HMMPfam_NDUF_B7	-	no_errors
EMR3	84658	broad.mit.edu	36	19	14613392	14613392	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14613392	14613392	C	T	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	missense	c.1087	p.G363R	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2"	"HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
EMR3	84658	broad.mit.edu	36	19	14615967	14615967	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14615967	14615967	A	T	SNP	EMR3	NM_032571	human	genbank	54_36p	-1	reviewed	missense	c.1003	p.C335S	0.31	"HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like"	"PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_G_PROTEIN_RECEP_F2_2,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
OR7C1	26664	broad.mit.edu	36	19	14771869	14771869	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14771869	14771869	A	G	SNP	OR7C1	NM_198944	human	genbank	54_36p	-1	validated	missense	c.80	p.L27P	0.02	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
OR7C2	26658	broad.mit.edu	36	19	14913699	14913699	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14913699	14913699	G	A	SNP	OR7C2	NM_012377	human	genbank	54_36p	1	provisional	silent	c.399	p.T133	0	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
SLC1A6	6511	broad.mit.edu	36	19	14944684	14944684	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	14944684	14944684	G	A	SNP	SLC1A6	NM_005071	human	genbank	54_36p	-1	provisional	silent	c.39	p.S13	0.95	NULL	"HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2"	-	no_errors
OR1I1	126370	broad.mit.edu	36	19	15058970	15058970	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	15058970	15058970	C	G	SNP	OR1I1	NM_001004713	human	genbank	54_36p	1	provisional	missense	c.94	p.L32V	0.99	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
NOTCH3	4854	broad.mit.edu	36	19	15139118	15139118	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	15139118	15139118	C	A	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	silent	c.5304	p.L1768	0.98	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH3	4854	broad.mit.edu	36	19	15142145	15142145	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	15142145	15142145	A	C	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	missense	c.5111	p.M1704R	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NOTCH3	4854	broad.mit.edu	36	19	15161209	15161209	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	15161209	15161209	A	G	SNP	NOTCH3	NM_000435	human	genbank	54_36p	-1	reviewed	missense	c.1067	p.V356A	1	"HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
AKAP8	10270	broad.mit.edu	36	19	15344906	15344906	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	15344906	15344906	C	A	SNP	AKAP8	NM_005858	human	genbank	54_36p	-1	reviewed	missense	c.617	p.R206L	0.98	NULL	"superfamily_SSF56935,HMMSmart_ZnF_C2H2,HMMPfam_AKAP95,HMMPfam_RII_binding_1"	-	no_errors
WIZ	58525	broad.mit.edu	36	19	15398868	15398884	+	Frame_Shift_Del	DEL	CCCCCGGCAGCATCTCC	-	CCCCCGGCAGCATCTCC	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	CCCCCGGCAGCATCTCC	CCCCCGGCAGCATCTCC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	15398868	15398884	CCCCCGGCAGCATCTCC	-	DEL	WIZ	NM_021241	human	genbank	54_36p	-1	validated	frame_shift_del	c.1006_990	p.E331fs	0.998:1.000:1.000:0.997:0.918:0.987:0.991:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[15398793,15399344])"	no_errors
PGLYRP2	114770	broad.mit.edu	36	19	15440505	15440505	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	15440505	15440505	G	T	SNP	PGLYRP2	NM_052890	human	genbank	54_36p	-1	validated	missense	c.1700	p.P567Q	0	NULL	"superfamily_N-acetylmuramoyl-L-alanine amidase-like,HMMSmart_SM00701,HMMSmart_SM00644,HMMPfam_Amidase_2"	-	no_errors
CYP4F3	4051	broad.mit.edu	36	19	15617582	15617582	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	15617582	15617582	C	T	SNP	CYP4F3	NM_000896	human	genbank	54_36p	1	reviewed	silent	c.252	p.F84	0	"superfamily_Cytochrome_P450,HMMPfam_p450"	"superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4F12	66002	broad.mit.edu	36	19	15655418	15655418	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	15655418	15655418	C	T	SNP	CYP4F12	NM_023944	human	genbank	54_36p	1	reviewed	missense	c.763	p.R255C	0.91	"superfamily_Cytochrome P450,HMMPfam_p450"	"superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP4F12	66002	broad.mit.edu	36	19	15655522	15655522	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	15655522	15655522	C	G	SNP	CYP4F12	NM_023944	human	genbank	54_36p	1	reviewed	missense	c.867	p.D289E	0.24	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
OR10H1	26539	broad.mit.edu	36	19	15779448	15779448	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	15779448	15779448	C	T	SNP	OR10H1	NM_013940	human	genbank	54_36p	-1	validated	missense	c.400	p.V134M	0.01	"superfamily_SSF81321,HMMPfam_7tm_1"	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
OR10H1	26539	broad.mit.edu	36	19	15779819	15779819	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	15779819	15779819	G	C	SNP	OR10H1	NM_013940	human	genbank	54_36p	-1	validated	missense	c.29	p.T10S	0	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
CYP4F2	8529	broad.mit.edu	36	19	15861331	15861331	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	15861331	15861331	G	A	SNP	CYP4F2	NM_001082	human	genbank	54_36p	-1	reviewed	missense	c.820	p.R274W	0.61	"superfamily_Cytochrome_P450,HMMPfam_p450"	"superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450"	-	no_errors
TPM4	7171	broad.mit.edu	36	19	16039452	16039452	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	16039452	16039452	G	A	SNP	TPM4	ENST00000344824	human	ensembl	54_36p	1	known	silent	c.18	p.K6	1	NULL	"HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN"	-	no_errors
AP1M1	8907	broad.mit.edu	36	19	16175404	16175404	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	16175404	16175404	G	A	SNP	AP1M1	NM_032493	human	genbank	54_36p	1	reviewed	nonsense	c.177	p.W59*	1	superfamily_SNARE-like	"superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_2"	-	no_errors
EPS15L1	58513	broad.mit.edu	36	19	16389758	16389758	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	16389758	16389758	C	A	SNP	EPS15L1	NM_021235	human	genbank	54_36p	-1	provisional	splice_site	c.1107+1	e11+1	1	-	-	-	no_errors
SLC35E1	79939	broad.mit.edu	36	19	16538361	16538361	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	16538361	16538361	G	A	SNP	SLC35E1	NM_024881	human	genbank	54_36p	-1	validated	silent	c.306	p.F102	1	"HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE"	"HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE"	-	no_errors
MED26	9441	broad.mit.edu	36	19	16547872	16547872	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	16547872	16547872	C	T	SNP	MED26	NM_004831	human	genbank	54_36p	-1	validated	missense	c.1769	p.R590H	0.98	NULL	"HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMSmart_SM00509"	-	no_errors
TMEM38A	79041	broad.mit.edu	36	19	16651828	16651828	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	16651828	16651828	C	T	SNP	TMEM38A	NM_024074	human	genbank	54_36p	1	provisional	missense	c.158	p.A53V	1	HMMPfam_DUF714	HMMPfam_DUF714	-	no_errors
CPAMD8	27151	broad.mit.edu	36	19	16886585	16886585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	16886585	16886585	C	T	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.3809	p.R1270H	1	"superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp"	###############################################################################################################################################################################################################################################################	-	no_errors
CPAMD8	27151	broad.mit.edu	36	19	16900019	16900019	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	16900019	16900019	T	C	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.3311	p.N1104S	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CPAMD8	27151	broad.mit.edu	36	19	16952496	16952496	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	19	16952496	16952496	C	A	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.1537	p.V513F	1	HMMPfam_A2M_N_2	###############################################################################################################################################################################################################################################################	-	no_errors
CPAMD8	27151	broad.mit.edu	36	19	16969035	16969035	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	16969035	16969035	C	A	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	silent	c.1122	p.G374	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CPAMD8	27151	broad.mit.edu	36	19	16981120	16981120	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	16981120	16981120	T	C	SNP	CPAMD8	NM_015692	human	genbank	54_36p	-1	validated	missense	c.638	p.Y213C	1	HMMPfam_A2M_N	###############################################################################################################################################################################################################################################################	-	no_errors
MYO9B	4650	broad.mit.edu	36	19	17166612	17166617	+	In_Frame_Del	DEL	ACTCTC	-	ACTCTC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	ACTCTC	ACTCTC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	17166612	17166617	ACTCTC	-	DEL	MYO9B	NM_004145	human	genbank	54_36p	1	validated	in_frame_del	c.3376_3381	p.TL1126in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000	NULL	"HMMPfam_RA,HMMSmart_RA,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	"(deletion:cds_exon[17166365,17167282])"	no_errors
USHBP1	83878	broad.mit.edu	36	19	17227269	17227269	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	17227269	17227269	C	T	SNP	USHBP1	NM_031941	human	genbank	54_36p	-1	validated	silent	c.1617	p.Q539	0.01	NULL	HMMPfam_MCC-bdg_PDZ	-	no_errors
ANO8	57719	broad.mit.edu	36	19	17296810	17296810	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	17296810	17296810	C	A	SNP	ANO8	NM_020959	human	genbank	54_36p	-1	provisional	missense	c.3047	p.G1016V	0.28	NULL	HMMPfam_DUF590	-	no_errors
ANO8	57719	broad.mit.edu	36	19	17301630	17301630	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	17301630	17301630	A	T	SNP	ANO8	NM_020959	human	genbank	54_36p	-1	provisional	missense	c.1340	p.V447D	1	NULL	HMMPfam_DUF590	-	no_errors
BST2	684	broad.mit.edu	36	19	17376202	17376202	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	17376202	17376202	T	G	SNP	BST2	NM_004335	human	genbank	54_36p	-1	reviewed	missense	c.330	p.Q110H	0	NULL	NULL	-	no_errors
BST2	684	broad.mit.edu	36	19	17377280	17377280	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	17377280	17377280	C	G	SNP	BST2	NM_004335	human	genbank	54_36p	-1	reviewed	silent	c.105	p.V35	0	NULL	NULL	-	no_errors
FAM129C	199786	broad.mit.edu	36	19	17523661	17523661	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	17523661	17523661	T	C	SNP	FAM129C	NM_001098524	human	genbank	54_36p	1	validated	missense	c.1910	p.I637T	0.01	NULL	"superfamily_PH domain-like,HMMSmart_SM00233"	-	no_errors
UNC13A	23025	broad.mit.edu	36	19	17611681	17611681	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	17611681	17611681	T	A	SNP	UNC13A	NM_001080421	human	genbank	54_36p	-1	provisional	missense	c.3088	p.N1030Y	1	NULL	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD"	-	no_errors
UNC13A	23025	broad.mit.edu	36	19	17617817	17617817	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	17617817	17617817	A	G	SNP	UNC13A	NM_001080421	human	genbank	54_36p	-1	provisional	silent	c.2412	p.Y804	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_Cysteine-rich domain"	-	no_errors
UNC13A	23025	broad.mit.edu	36	19	17646535	17646535	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	17646535	17646535	A	T	SNP	UNC13A	NM_001080421	human	genbank	54_36p	-1	provisional	missense	c.347	p.V116E	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_Cysteine-rich domain"	-	no_errors
MAP1S	55201	broad.mit.edu	36	19	17706155	17706155	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	17706155	17706155	C	T	SNP	MAP1S	NM_018174	human	genbank	54_36p	1	validated	missense	c.3098	p.A1033V	0.89	NULL	NULL	-	no_errors
JAK3	3718	broad.mit.edu	36	19	17811423	17811423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	17811423	17811423	G	A	SNP	JAK3	NM_000215	human	genbank	54_36p	-1	reviewed	missense	c.1304	p.T435I	0	"superfamily_SH2 domain,HMMSmart_SM00252"	"HMMSmart_SM00295,superfamily_SH2 domain,HMMSmart_SM00252,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_THIOL_PROTEASE_HIS,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
KCNN1	3780	broad.mit.edu	36	19	17945992	17945992	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	17945992	17945992	C	G	SNP	KCNN1	NM_002248	human	genbank	54_36p	1	reviewed	missense	c.295	p.L99V	1	HMMPfam_SK_channel	"HMMPfam_SK_channel,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_Small-conductance potassium channel,HMMPfam_CaMBD"	-	no_errors
KCNN1	3780	broad.mit.edu	36	19	17946960	17946960	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	17946960	17946960	G	T	SNP	KCNN1	NM_002248	human	genbank	54_36p	1	reviewed	silent	c.462	p.L154	0.98	HMMPfam_SK_channel	"HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,HMMPfam_SK_channel,HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels"	-	no_errors
KCNN1	3780	broad.mit.edu	36	19	17953529	17953529	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	17953529	17953529	G	T	SNP	KCNN1	NM_002248	human	genbank	54_36p	1	reviewed	silent	c.510	p.V170	1	HMMPfam_SK_channel	"HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,HMMPfam_SK_channel,HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels"	-	no_errors
MAST3	23031	broad.mit.edu	36	19	18096582	18096582	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	18096582	18096582	A	C	SNP	MAST3	NM_015016	human	genbank	54_36p	1	validated	missense	c.989	p.E330A	1	HMMPfam_DUF1908	"PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ"	-	no_errors
MAST3	23031	broad.mit.edu	36	19	18116395	18116395	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	18116395	18116395	G	A	SNP	MAST3	NM_015016	human	genbank	54_36p	1	validated	missense	c.2617	p.A873T	0.02	NULL	"HMMSmart_S_TK_X,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DUF1908,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
PIK3R2	5296	broad.mit.edu	36	19	18137981	18137981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	18137981	18137981	G	A	SNP	PIK3R2	NM_005027	human	genbank	54_36p	1	validated	missense	c.1428	p.M476I	1	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2"	-	no_errors
KIAA1683	80726	broad.mit.edu	36	19	18237230	18237230	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	18237230	18237230	G	A	SNP	KIAA1683	NM_025249	human	genbank	54_36p	-1	validated	missense	c.2120	p.A707V	0	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ"	-	no_errors
KIAA1683	80726	broad.mit.edu	36	19	18238290	18238290	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	18238290	18238290	A	G	SNP	KIAA1683	NM_025249	human	genbank	54_36p	-1	validated	missense	c.1060	p.Y354H	0.01	NULL	"HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ISYNA1	51477	broad.mit.edu	36	19	18407730	18407730	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	18407730	18407730	G	T	SNP	ISYNA1	NM_016368	human	genbank	54_36p	-1	provisional	missense	c.977	p.T326N	1	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_NAD_binding_5,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain,HMMPfam_Inos-1-P_synth"	"superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_NAD_binding_5,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain,HMMPfam_Inos-1-P_synth"	-	no_errors
FKBP8	23770	broad.mit.edu	36	19	18503978	18503979	+	3'UTR	DNP	GT	GT	CG	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	18503978	18503979	GT	CG	DNP	FKBP8	NM_012181	human	genbank	54_36p	-1	reviewed	3_prime_untranslated_region	c.*1	NULL	0.047:0.977	-	-	-	no_errors
FKBP8	23770	broad.mit.edu	36	19	18511469	18511469	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	18511469	18511469	G	C	SNP	FKBP8	NM_012181	human	genbank	54_36p	-1	reviewed	silent	c.354	p.V118	0.84	"superfamily_SSF54534,HMMPfam_FKBP_C"	"superfamily_SSF54534,HMMPfam_FKBP_C,superfamily_SSF48452,HMMPfam_TPR_1"	-	no_errors
CRTC1	23373	broad.mit.edu	36	19	18747579	18747579	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	18747579	18747579	G	A	SNP	CRTC1	NM_001098482	human	genbank	54_36p	1	validated	silent	c.1689	p.S563	0.99	NULL	NULL	-	no_errors
COPE	11316	broad.mit.edu	36	19	18891111	18891111	+	Missense_Mutation	SNP	A	A	C	rs11537888	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	18891111	18891111	A	C	SNP	COPE	NM_007263	human	genbank	54_36p	-1	reviewed	missense	c.47	p.V16G	1	HMMPfam_Coatomer_E	"HMMPfam_Coatomer_E,superfamily_TPR-like"	-	no_errors
ARMC6	93436	broad.mit.edu	36	19	19029264	19029264	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	19029264	19029264	G	A	SNP	ARMC6	ENST00000379532	human	ensembl	54_36p	1	known	splice_site	c.993+1	e6+1	1	-	-	-	no_start_codon
RFXANK	8625	broad.mit.edu	36	19	19170992	19170992	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19170992	19170992	G	A	SNP	RFXANK	NM_003721	human	genbank	54_36p	1	reviewed	missense	c.661	p.D221N	1	"superfamily_Ankyrin repeat,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
NCAN	1463	broad.mit.edu	36	19	19190823	19190823	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19190823	19190823	C	T	SNP	NCAN	NM_004386	human	genbank	54_36p	1	validated	missense	c.173	p.P58L	1	"superfamily_SSF48726,HMMSmart_IG"	###############################################################################################################################################################################################################################################################	-	no_errors
NCAN	1463	broad.mit.edu	36	19	19200041	19200041	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19200041	19200041	C	T	SNP	NCAN	NM_004386	human	genbank	54_36p	1	validated	missense	c.2612	p.T871M	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
GATAD2A	54815	broad.mit.edu	36	19	19473163	19473163	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	19473163	19473163	G	C	SNP	GATAD2A	NM_017660	human	genbank	54_36p	1	provisional	missense	c.1009	p.G337R	0.95	NULL	"superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA"	-	no_errors
NDUFA13	51079	broad.mit.edu	36	19	19488083	19488083	+	Silent	SNP	G	G	C	rs11552886	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	19488083	19488083	G	C	SNP	NDUFA13	NM_015965	human	genbank	54_36p	1	validated	silent	c.285	p.P95	0.42	HMMPfam_GRIM-19	HMMPfam_GRIM-19	-	no_errors
CILP2	148113	broad.mit.edu	36	19	19514197	19514197	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19514197	19514197	C	G	SNP	CILP2	NM_153221	human	genbank	54_36p	1	validated	missense	c.606	p.D202E	0.01	NULL	"superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,superfamily_CarboxypepD_reg,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2"	-	no_errors
CILP2	148113	broad.mit.edu	36	19	19517673	19517673	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	19517673	19517673	C	A	SNP	CILP2	NM_153221	human	genbank	54_36p	1	validated	missense	c.3319	p.P1107T	1	NULL	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMSmart_IGc2,superfamily_CarboxypepD_reg,HMMPfam_I-set,superfamily_SSF48726"	-	no_errors
ATP13A1	57130	broad.mit.edu	36	19	19627160	19627160	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19627160	19627160	G	T	SNP	ATP13A1	NM_020410	human	genbank	54_36p	-1	validated	missense	c.1145	p.A382D	1	NULL	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660"	-	no_errors
ATP13A1	57130	broad.mit.edu	36	19	19628522	19628522	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19628522	19628522	G	A	SNP	ATP13A1	NM_020410	human	genbank	54_36p	-1	validated	missense	c.676	p.R226C	1	"HMMPfam_E1-E2_ATPase,superfamily_SSF81653"	"HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660"	-	no_errors
ZNF101	94039	broad.mit.edu	36	19	19652053	19652053	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19652053	19652053	G	A	SNP	ZNF101	NM_033204	human	genbank	54_36p	1	provisional	missense	c.1255	p.G419R	0.1	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2"	-	no_errors
ZNF14	7561	broad.mit.edu	36	19	19683497	19683497	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	19683497	19683497	A	T	SNP	ZNF14	NM_021030	human	genbank	54_36p	-1	reviewed	missense	c.1593	p.F531L	0.01	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF14	7561	broad.mit.edu	36	19	19684594	19684594	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	19684594	19684594	C	T	SNP	ZNF14	NM_021030	human	genbank	54_36p	-1	reviewed	missense	c.496	p.V166M	0.93	superfamily_SSF57667	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF14	7561	broad.mit.edu	36	19	19685901	19685901	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	19685901	19685901	T	G	SNP	ZNF14	NM_021030	human	genbank	54_36p	-1	reviewed	silent	c.190	p.R64	0.07	HMMSmart_KRAB	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF486	90649	broad.mit.edu	36	19	20168880	20168880	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	20168880	20168880	C	T	SNP	ZNF486	NM_052852	human	genbank	54_36p	1	provisional	missense	c.361	p.H121Y	0.04	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF714	148206	broad.mit.edu	36	19	21092186	21092186	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	21092186	21092186	T	A	SNP	ZNF714	NM_182515	human	genbank	54_36p	1	validated	silent	c.876	p.A292	0.17	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF708	7562	broad.mit.edu	36	19	21268402	21268402	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	21268402	21268402	G	-	DEL	ZNF708	NM_021269	human	genbank	54_36p	-1	validated	frame_shift_del	c.1206	p.K403fs	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_ZINC_PROTEASE"	"(deletion:cds_exon[21267916,21269381])"	no_errors
ZNF708	7562	broad.mit.edu	36	19	21283944	21283944	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	21283944	21283944	T	C	SNP	ZNF708	NM_021269	human	genbank	54_36p	-1	validated	missense	c.170	p.E57G	0.94	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_ZINC_PROTEASE"	-	no_errors
ZNF43	7594	broad.mit.edu	36	19	21782339	21782339	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	21782339	21782339	A	C	SNP	ZNF43	NM_003423	human	genbank	54_36p	-1	validated	missense	c.2340	p.H780Q	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF208	7757	broad.mit.edu	36	19	21946280	21946280	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	21946280	21946280	C	A	SNP	ZNF208	NM_007153	human	genbank	54_36p	-1	provisional	missense	c.3014	p.R1005M	0	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF208	7757	broad.mit.edu	36	19	21947816	21947816	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	21947816	21947816	C	A	SNP	ZNF208	NM_007153	human	genbank	54_36p	-1	provisional	missense	c.1562	p.R521M	0	NULL	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF208	7757	broad.mit.edu	36	19	21947837	21947837	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	21947837	21947837	T	G	SNP	ZNF208	NM_007153	human	genbank	54_36p	-1	provisional	missense	c.1541	p.N514T	0.1	NULL	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF208	7757	broad.mit.edu	36	19	21947946	21947946	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	21947946	21947946	A	C	SNP	ZNF208	ENST00000340708	human	ensembl	54_36p	-1	known	missense	c.1427	p.V476G	0.55	superfamily_Multiheme cytochromes	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers"	-	no_start_codon
ZNF257	113835	broad.mit.edu	36	19	22062936	22062936	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	22062936	22062936	T	C	SNP	ZNF257	NM_033468	human	genbank	54_36p	1	provisional	missense	c.544	p.F182L	0.01	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	-	no_errors
ZNF257	113835	broad.mit.edu	36	19	22063063	22063063	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	22063063	22063063	C	T	SNP	ZNF257	NM_033468	human	genbank	54_36p	1	provisional	missense	c.671	p.T224I	0.56	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF99	7652	broad.mit.edu	36	19	22733086	22733086	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	22733086	22733086	C	A	SNP	ZNF99	NM_001080409	human	genbank	54_36p	-1	provisional	missense	c.1192	p.A398S	0.03	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF91	7644	broad.mit.edu	36	19	23336986	23336986	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	23336986	23336986	C	T	SNP	ZNF91	NM_003430	human	genbank	54_36p	-1	validated	missense	c.635	p.C212Y	0.61	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355"	-	no_errors
ZNF91	7644	broad.mit.edu	36	19	23337260	23337260	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	23337260	23337260	G	T	SNP	ZNF91	NM_003430	human	genbank	54_36p	-1	validated	missense	c.361	p.Q121K	0	NULL	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
PLEKHF1	79156	broad.mit.edu	36	19	34856998	34856998	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	34856998	34856998	G	A	SNP	PLEKHF1	NM_024310	human	genbank	54_36p	1	validated	missense	c.412	p.G138S	1	superfamily_FYVE_PHD_ZnF	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE"	-	no_errors
ZNF536	9745	broad.mit.edu	36	19	35626726	35626726	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	35626726	35626726	C	T	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	silent	c.417	p.F139	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF536	9745	broad.mit.edu	36	19	35628320	35628320	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	35628320	35628320	C	T	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	missense	c.2011	p.R671W	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF536	9745	broad.mit.edu	36	19	35730977	35730977	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	35730977	35730977	G	C	SNP	ZNF536	NM_014717	human	genbank	54_36p	1	provisional	missense	c.2611	p.G871R	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
TSHZ3	57616	broad.mit.edu	36	19	36460292	36460292	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	36460292	36460292	C	T	SNP	TSHZ3	NM_020856	human	genbank	54_36p	-1	validated	missense	c.2247	p.M749I	1	NULL	"PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
ZNF507	22847	broad.mit.edu	36	19	37536140	37536140	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	37536140	37536140	C	T	SNP	ZNF507	NM_014910	human	genbank	54_36p	1	validated	silent	c.564	p.S188	0.8	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
DPY19L3	147991	broad.mit.edu	36	19	37651543	37651543	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	37651543	37651543	C	G	SNP	DPY19L3	NM_207325	human	genbank	54_36p	1	provisional	missense	c.1681	p.L561V	1	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
PDCD5	9141	broad.mit.edu	36	19	37768650	37768650	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	37768650	37768650	G	C	SNP	PDCD5	NM_004708	human	genbank	54_36p	1	reviewed	missense	c.255	p.E85D	1	"HMMPfam_dsDNA_bind,superfamily_Hypothetical protein MTH1615"	"HMMPfam_dsDNA_bind,superfamily_Hypothetical protein MTH1615"	-	no_errors
ANKRD27	84079	broad.mit.edu	36	19	37802272	37802272	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	37802272	37802272	G	C	SNP	ANKRD27	NM_032139	human	genbank	54_36p	-1	validated	missense	c.1855	p.L619V	0	NULL	"superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
NUDT19	390916	broad.mit.edu	36	19	37875230	37875231	+	Missense_Mutation	DNP	CG	CG	AC	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	37875230	37875231	CG	AC	DNP	NUDT19	NM_001105570	human	genbank	54_36p	1	validated	missense	c.524_525	p.P175H	0.954:0.462	"superfamily_NUDIX_hydrolase,HMMPfam_NUDIX"	"PatternScan_NUDIX,superfamily_NUDIX_hydrolase,HMMPfam_NUDIX"	-	no_errors
SLC7A9	11136	broad.mit.edu	36	19	38046869	38046869	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	38046869	38046869	C	G	SNP	SLC7A9	NM_014270	human	genbank	54_36p	-1	reviewed	missense	c.451	p.V151L	0.29	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
RHPN2	85415	broad.mit.edu	36	19	38174570	38174570	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	38174570	38174570	G	A	SNP	RHPN2	NM_033103	human	genbank	54_36p	-1	provisional	missense	c.1643	p.S548L	1	"superfamily_PDZ,HMMSmart_PDZ"	"superfamily_PKN_effector,HMMSmart_Hr1,HMMPfam_HR1,HMMPfam_BRO1,superfamily_PDZ,HMMSmart_PDZ"	-	no_errors
WDR88	126248	broad.mit.edu	36	19	38334001	38334001	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	38334001	38334001	A	T	SNP	WDR88	NM_173479	human	genbank	54_36p	1	validated	missense	c.754	p.R252W	0.97	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,HMMSmart_SM00564,HMMPfam_PQQ,PatternScan_WD_REPEATS_1"	-	no_errors
LRP3	4037	broad.mit.edu	36	19	38388221	38388221	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	38388221	38388221	C	T	SNP	LRP3	NM_002333	human	genbank	54_36p	1	validated	silent	c.705	p.D235	0.95	"HMMPfam_Ldl_recept_a,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa,PatternScan_LDLRA_1"	"superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1"	-	no_errors
SLC7A10	56301	broad.mit.edu	36	19	38393283	38393283	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	38393283	38393283	C	T	SNP	SLC7A10	NM_019849	human	genbank	54_36p	-1	validated	missense	c.1193	p.C398Y	1	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
PEPD	5184	broad.mit.edu	36	19	38672798	38672798	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	38672798	38672798	G	A	SNP	PEPD	NM_000285	human	genbank	54_36p	-1	validated	silent	c.447	p.G149	0.97	"superfamily_SSF53092,HMMPfam_AMP_N"	"superfamily_SSF53092,HMMPfam_AMP_N,superfamily_Peptidase_M24_cat_core,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE"	-	no_errors
CHST8	64377	broad.mit.edu	36	19	38872009	38872009	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	38872009	38872009	T	A	SNP	CHST8	NM_022467	human	genbank	54_36p	1	validated	missense	c.2	p.M1K	0.55	NULL	HMMPfam_Sulfotransfer_2	-	no_errors
KIAA0355	9710	broad.mit.edu	36	19	39510787	39510787	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	39510787	39510787	C	G	SNP	KIAA0355	NM_014686	human	genbank	54_36p	1	validated	missense	c.995	p.P332R	1	NULL	NULL	-	no_errors
KIAA0355	9710	broad.mit.edu	36	19	39525116	39525116	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	39525116	39525116	C	T	SNP	KIAA0355	NM_014686	human	genbank	54_36p	1	validated	missense	c.2437	p.P813S	1	NULL	NULL	-	no_errors
GPI	2821	broad.mit.edu	36	19	39579083	39579083	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	39579083	39579083	C	G	SNP	GPI	NM_000175	human	genbank	54_36p	1	reviewed	missense	c.1100	p.S367C	0.05	"HMMPfam_PGI,superfamily_SSF53697"	"HMMPfam_PGI,PatternScan_P_GLUCOSE_ISOMERASE_2,PatternScan_P_GLUCOSE_ISOMERASE_1,superfamily_SSF53697"	-	no_errors
PDCD2L	84306	broad.mit.edu	36	19	39592050	39592050	+	Missense_Mutation	SNP	C	C	G	rs61740326	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	39592050	39592050	C	G	SNP	PDCD2L	NM_032346	human	genbank	54_36p	1	provisional	missense	c.481	p.R161G	0.17	NULL	HMMPfam_PDCD2_C	-	no_errors
ZNF181	339318	broad.mit.edu	36	19	39923763	39923763	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	39923763	39923763	A	G	SNP	ZNF181	NM_001029997	human	genbank	54_36p	1	validated	missense	c.445	p.N149D	0.09	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF181	339318	broad.mit.edu	36	19	39923917	39923917	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	39923917	39923917	C	G	SNP	ZNF181	NM_001029997	human	genbank	54_36p	1	validated	missense	c.599	p.P200R	0.99	superfamily_SSF57667	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF30	90075	broad.mit.edu	36	19	40127079	40127079	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40127079	40127079	G	A	SNP	ZNF30	NM_001099437	human	genbank	54_36p	1	validated	missense	c.1372	p.E458K	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SCN1B	6324	broad.mit.edu	36	19	40216445	40216445	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40216445	40216445	G	A	SNP	SCN1B	NM_199037	human	genbank	54_36p	1	validated	missense	c.410	p.S137N	1	NULL	"superfamily_SSF48726,HMMPfam_ig"	-	no_errors
HPN	3249	broad.mit.edu	36	19	40243141	40243141	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	40243141	40243141	A	C	SNP	HPN	NM_002151	human	genbank	54_36p	1	provisional	missense	c.505	p.T169P	1	"superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin"	"PatternScan_SRCR_1,HMMPfam_Hepsin-SRCR,superfamily_Srcr_receptor,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
HPN	3249	broad.mit.edu	36	19	40248371	40248371	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	40248371	40248371	C	G	SNP	HPN	NM_002151	human	genbank	54_36p	1	provisional	missense	c.996	p.I332M	1	"HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys"	"PatternScan_SRCR_1,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,HMMPfam_Hepsin-SRCR,superfamily_Srcr_receptor,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
CD22	933	broad.mit.edu	36	19	40520658	40520658	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40520658	40520658	G	A	SNP	CD22	NM_001771	human	genbank	54_36p	1	validated	silent	c.879	p.T293	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
CD22	933	broad.mit.edu	36	19	40520738	40520738	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40520738	40520738	C	T	SNP	CD22	NM_001771	human	genbank	54_36p	1	validated	missense	c.959	p.S320L	0.04	"HMMSmart_SM00409,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
CD22	933	broad.mit.edu	36	19	40528449	40528449	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40528449	40528449	C	G	SNP	CD22	NM_001771	human	genbank	54_36p	1	validated	missense	c.2313	p.N771K	0	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
CD22	933	broad.mit.edu	36	19	40528939	40528939	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40528939	40528939	T	A	SNP	CD22	NM_001771	human	genbank	54_36p	1	validated	missense	c.2373	p.D791E	0.04	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
DMKN	93099	broad.mit.edu	36	19	40684629	40684629	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	40684629	40684629	G	T	SNP	DMKN	NM_001035516	human	genbank	54_36p	-1	reviewed	missense	c.17	p.A6D	0	NULL	NULL	-	no_errors
SBSN	374897	broad.mit.edu	36	19	40709533	40709533	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40709533	40709533	C	A	SNP	SBSN	NM_198538	human	genbank	54_36p	-1	provisional	silent	c.462	p.G154	1	NULL	NULL	-	no_errors
MLL4	9757	broad.mit.edu	36	19	40903085	40903085	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	40903085	40903085	T	C	SNP	uc010eei.1	ENST00000222270	human	ensembl	54_36p	1	known	silent	c.996	p.H332	0.06	NULL	"HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508"	-	no_errors
MLL4	9757	broad.mit.edu	36	19	40904188	40904188	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	40904188	40904188	A	G	SNP	uc010eei.1	ENST00000222270	human	ensembl	54_36p	1	known	missense	c.2099	p.N700S	0.86	NULL	"HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain"	-	no_errors
MLL4	9757	broad.mit.edu	36	19	40910339	40910339	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	40910339	40910339	G	A	SNP	MLL4	NM_014727	human	genbank	54_36p	1	reviewed	nonsense	c.4277	p.W1426*	0	NULL	"HMMPfam_zf-CXXC,HMMPfam_AT_hook"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PSENEN	55851	broad.mit.edu	36	19	40929549	40929549	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40929549	40929549	G	C	SNP	PSENEN	NM_172341	human	genbank	54_36p	1	reviewed	silent	c.267	p.G89	1	HMMPfam_PEN-2	HMMPfam_PEN-2	-	no_errors
C19orf55	148137	broad.mit.edu	36	19	40942198	40942198	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	40942198	40942198	C	A	SNP	C19orf55	NM_001039887	human	genbank	54_36p	1	predicted	missense	c.95	p.T32N	0.01	NULL	NULL	-	no_errors
C19orf55	148137	broad.mit.edu	36	19	40947603	40947603	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40947603	40947603	C	T	SNP	C19orf55	NM_001039887	human	genbank	54_36p	1	predicted	silent	c.552	p.H184	0	NULL	NULL	-	no_errors
PRODH2	58510	broad.mit.edu	36	19	40994993	40994993	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	40994993	40994993	G	T	SNP	PRODH2	NM_021232	human	genbank	54_36p	-1	reviewed	missense	c.621	p.N207K	1	"HMMPfam_Pro_dh,superfamily_SSF51730"	"HMMPfam_Pro_dh,superfamily_SSF51730"	-	no_errors
NPHS1	4868	broad.mit.edu	36	19	41034313	41034313	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	41034313	41034313	C	A	SNP	NPHS1	NM_004646	human	genbank	54_36p	-1	validated	missense	c.160	p.G54W	0.21	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
KIRREL2	84063	broad.mit.edu	36	19	41049062	41049062	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	41049062	41049062	G	A	SNP	KIRREL2	NM_199180	human	genbank	54_36p	1	validated	missense	c.1955	p.C652Y	0.98	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set"	-	no_errors
APLP1	333	broad.mit.edu	36	19	41061911	41061911	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	41061911	41061911	C	G	SNP	APLP1	NM_001024807	human	genbank	54_36p	1	reviewed	silent	c.1809	p.L603	0.99	HMMPfam_APP_amyloid	###############################################################################################################################################################################################################################################################	-	no_errors
C19orf46	163183	broad.mit.edu	36	19	41189971	41189971	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	41189971	41189971	T	C	SNP	C19orf46	NM_001039876	human	genbank	54_36p	-1	validated	missense	c.319	p.N107D	0.03	NULL	HMMPfam_KASH	-	no_errors
CLIP3	25999	broad.mit.edu	36	19	41200677	41200677	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	41200677	41200677	C	T	SNP	CLIP3	NM_015526	human	genbank	54_36p	-1	provisional	missense	c.1240	p.A414T	0.23	superfamily_Cap-Gly domain	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1"	-	no_errors
THAP8	199745	broad.mit.edu	36	19	41222196	41222196	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	41222196	41222196	G	T	SNP	THAP8	NM_152658	human	genbank	54_36p	-1	provisional	missense	c.541	p.Q181K	0.93	NULL	"HMMPfam_THAP,HMMSmart_DM3"	-	no_errors
POLR2I	5438	broad.mit.edu	36	19	41297578	41297578	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	41297578	41297578	G	C	SNP	POLR2I	NM_006233	human	genbank	54_36p	-1	reviewed	nonsense	c.21	p.Y7*	1	NULL	"superfamily_Zinc beta-ribbon,HMMPfam_RNA_POL_M_15KD,HMMSmart_SM00661,PatternScan_RNA_POL_M_15KD,HMMSmart_SM00440,PatternScan_ZF_TFIIS_1,PatternScan_IG_MHC"	-	no_errors
ZNF565	147929	broad.mit.edu	36	19	41365855	41365855	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	41365855	41365855	C	T	SNP	ZNF565	NM_001042474	human	genbank	54_36p	-1	validated	missense	c.853	p.G285S	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFP14	57677	broad.mit.edu	36	19	41524133	41524133	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	41524133	41524133	A	G	SNP	ZFP14	NM_020917	human	genbank	54_36p	-1	provisional	silent	c.435	p.I145	0.13	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF529	57711	broad.mit.edu	36	19	41730515	41730515	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	41730515	41730515	G	A	SNP	ZNF529	NM_020951	human	genbank	54_36p	-1	validated	missense	c.470	p.T157I	0.02	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF567	163081	broad.mit.edu	36	19	41902406	41902406	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	41902406	41902406	T	G	SNP	ZNF567	NM_152603	human	genbank	54_36p	1	provisional	missense	c.847	p.C283G	0.99	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF345	25850	broad.mit.edu	36	19	42060336	42060336	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	42060336	42060336	A	T	SNP	ZNF345	NM_003419	human	genbank	54_36p	1	provisional	missense	c.764	p.E255V	1	superfamily_SSF57667	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF585B	92285	broad.mit.edu	36	19	42369890	42369890	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	42369890	42369890	T	C	SNP	ZNF585B	NM_152279	human	genbank	54_36p	-1	provisional	missense	c.389	p.Y130C	0	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF383	163087	broad.mit.edu	36	19	42418782	42418782	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	42418782	42418782	G	A	SNP	ZNF383	NM_152604	human	genbank	54_36p	1	provisional	missense	c.198	p.M66I	0.33	HMMSmart_KRAB	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HKR1	284459	broad.mit.edu	36	19	42527429	42527429	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	42527429	42527429	G	T	SNP	HKR1	NM_181786	human	genbank	54_36p	1	provisional	missense	c.3	p.M1I	0.06	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
HKR1	284459	broad.mit.edu	36	19	42544976	42544976	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	42544976	42544976	C	T	SNP	HKR1	NM_181786	human	genbank	54_36p	1	provisional	missense	c.439	p.P147S	0	NULL	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF527	84503	broad.mit.edu	36	19	42571651	42571651	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	42571651	42571651	C	T	SNP	ZNF527	NM_032453	human	genbank	54_36p	1	validated	missense	c.860	p.S287L	0	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF570	148268	broad.mit.edu	36	19	42667854	42667854	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	42667854	42667854	C	T	SNP	ZNF570	NM_144694	human	genbank	54_36p	1	provisional	missense	c.1490	p.P497L	0.99	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF573	126231	broad.mit.edu	36	19	42922720	42922721	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	-	-	G	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	42922720	42922721	-	G	INS	ZNF573	NM_152360	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.337_336	p.F112fs	0.295:0.213	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
DPF1	8193	broad.mit.edu	36	19	43394803	43394803	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	43394803	43394803	G	T	SNP	DPF1	NM_004647	human	genbank	54_36p	-1	validated	nonsense	c.948	p.Y316*	1	"PatternScan_ZF_PHD_1,HMMSmart_SM00249,HMMPfam_PHD,superfamily_FYVE/PHD zinc finger"	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
KCNK6	9424	broad.mit.edu	36	19	43509738	43509738	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	43509738	43509738	C	T	SNP	KCNK6	NM_004823	human	genbank	54_36p	1	reviewed	missense	c.797	p.T266M	0.84	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2"	-	no_errors
CATSPERG	57828	broad.mit.edu	36	19	43553175	43553175	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	43553175	43553175	C	T	SNP	C19orf15	NM_021185	human	genbank	54_36p	1	validated	missense	c.2303	p.S768F	0.06	NULL	NULL	-	no_errors
RYR1	6261	broad.mit.edu	36	19	43624902	43624902	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	43624902	43624902	T	A	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.239	p.M80K	1	HMMPfam_Ins145_P3_rec	"HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans"	-	no_errors
RYR1	6261	broad.mit.edu	36	19	43672619	43672619	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	43672619	43672619	G	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.5878	p.A1960S	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR1	6261	broad.mit.edu	36	19	43707977	43707977	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	43707977	43707977	G	A	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.10621	p.A3541T	0.97	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR1	6261	broad.mit.edu	36	19	43710877	43710877	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	43710877	43710877	C	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.10916	p.T3639M	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR1	6261	broad.mit.edu	36	19	43715185	43715185	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	43715185	43715185	A	G	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.11228	p.E3743G	0.95	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
RYR1	6261	broad.mit.edu	36	19	43755730	43755730	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	43755730	43755730	A	T	SNP	RYR1	NM_000540	human	genbank	54_36p	1	reviewed	missense	c.14072	p.E4691V	1	NULL	"HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand"	-	no_errors
MAP4K1	11184	broad.mit.edu	36	19	43770262	43770262	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	43770262	43770262	G	A	SNP	MAP4K1	NM_001042600	human	genbank	54_36p	-1	validated	missense	c.2432	p.P811L	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_CNH,HMMPfam_CNH"	-	no_errors
ACTN4	81	broad.mit.edu	36	19	43896990	43896990	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	43896990	43896990	C	A	SNP	ACTN4	NM_004924	human	genbank	54_36p	1	reviewed	silent	c.861	p.V287	1	superfamily_Spectrin	"superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen"	-	no_errors
ECH1	1891	broad.mit.edu	36	19	44013967	44013967	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44013967	44013967	T	C	SNP	ECH1	NM_001398	human	genbank	54_36p	-1	reviewed	missense	c.82	p.S28G	0	NULL	"superfamily_SSF52096,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE"	-	no_errors
FBXO27	126433	broad.mit.edu	36	19	44209477	44209477	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44209477	44209477	G	T	SNP	FBXO27	NM_178820	human	genbank	54_36p	-1	provisional	missense	c.581	p.A194D	0.98	"HMMPfam_FBA,superfamily_Gal_bind_like"	"superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,HMMPfam_FBA,superfamily_Gal_bind_like"	-	no_errors
NCCRP1	342897	broad.mit.edu	36	19	44381652	44381652	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44381652	44381652	G	C	SNP	NCCRP1	NM_001001414	human	genbank	54_36p	1	provisional	missense	c.455	p.W152S	1	"HMMPfam_FBA,superfamily_Gal_bind_like"	"HMMPfam_FBA,superfamily_Gal_bind_like"	-	no_errors
IL28A	282616	broad.mit.edu	36	19	44451639	44451639	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44451639	44451639	C	G	SNP	IL28A	NM_172138	human	genbank	54_36p	1	reviewed	missense	c.200	p.S67W	0	NULL	NULL	-	no_errors
LRFN1	57622	broad.mit.edu	36	19	44496512	44496512	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44496512	44496512	C	T	SNP	LRFN1	NM_020862	human	genbank	54_36p	-1	validated	silent	c.1305	p.S435	0.78	"HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like"	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like"	-	no_errors
SUPT5H	6829	broad.mit.edu	36	19	44635845	44635845	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44635845	44635845	G	T	SNP	SUPT5H	NM_003169	human	genbank	54_36p	1	validated	nonsense	c.85	p.E29*	1	NULL	"HMMPfam_Supt5,HMMSmart_SM00738,HMMSmart_SM00739,superfamily_Translation proteins SH3-like domain,HMMPfam_KOW"	-	no_errors
TIMM50	92609	broad.mit.edu	36	19	44670651	44670651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44670651	44670651	C	G	SNP	TIMM50	NM_001001563	human	genbank	54_36p	1	validated	silent	c.1116	p.G372	0.95	"superfamily_SSF56784,HMMPfam_NIF,HMMSmart_CPDc"	"superfamily_SSF56784,HMMPfam_NIF,HMMSmart_CPDc"	-	no_errors
LGALS13	29124	broad.mit.edu	36	19	44787802	44787802	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	44787802	44787802	C	T	SNP	LGALS13	NM_013268	human	genbank	54_36p	1	reviewed	silent	c.237	p.D79	0	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Gal-bind_lectin,HMMSmart_SM00276"	"superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Gal-bind_lectin,HMMSmart_SM00276"	-	no_errors
DYRK1B	9149	broad.mit.edu	36	19	45011038	45011038	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	45011038	45011038	G	A	SNP	DYRK1B	NM_004714	human	genbank	54_36p	-1	reviewed	silent	c.546	p.F182	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
DYRK1B	9149	broad.mit.edu	36	19	45012486	45012486	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45012486	45012486	G	C	SNP	DYRK1B	NM_004714	human	genbank	54_36p	-1	reviewed	missense	c.394	p.Q132E	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
DYRK1B	9149	broad.mit.edu	36	19	45013011	45013011	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45013011	45013011	C	G	SNP	DYRK1B	NM_004714	human	genbank	54_36p	-1	reviewed	missense	c.216	p.Q72H	1	NULL	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
FBL	2091	broad.mit.edu	36	19	45023138	45023138	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45023138	45023138	C	A	SNP	FBL	NM_001436	human	genbank	54_36p	-1	reviewed	missense	c.140	p.G47V	0.15	NULL	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Fibrillarin,PatternScan_FIBRILLARIN"	-	no_errors
FCGBP	8857	broad.mit.edu	36	19	45054635	45054635	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	45054635	45054635	C	T	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.15275	p.R5092H	0.01	HMMPfam_C8	"HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC"	-	no_errors
FCGBP	8857	broad.mit.edu	36	19	45058257	45058257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45058257	45058257	G	A	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.13817	p.A4606V	0.01	"HMMPfam_VWD,HMMSmart_VWD"	"HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
FCGBP	8857	broad.mit.edu	36	19	45060257	45060257	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45060257	45060257	C	T	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.12931	p.V4311I	0.5	HMMPfam_C8	"HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
FCGBP	8857	broad.mit.edu	36	19	45060417	45060417	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45060417	45060417	G	A	SNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	silent	c.12771	p.D4257	0.04	NULL	"HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
FCGBP	8857	broad.mit.edu	36	19	45090281	45090282	+	Missense_Mutation	DNP	CG	CG	AT	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45090281	45090282	CG	AT	DNP	FCGBP	NM_003890	human	genbank	54_36p	-1	validated	missense	c.6526_6525	p.D2176Y	0.000:0.000	"HMMPfam_VWD,HMMSmart_VWD"	"HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL"	-	no_errors
ZNF546	339327	broad.mit.edu	36	19	45205083	45205083	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45205083	45205083	C	T	SNP	ZNF546	NM_178544	human	genbank	54_36p	1	validated	silent	c.234	p.D78	0	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF546	339327	broad.mit.edu	36	19	45212801	45212801	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45212801	45212801	A	T	SNP	ZNF546	NM_178544	human	genbank	54_36p	1	validated	missense	c.1784	p.N595I	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
C19orf47	126526	broad.mit.edu	36	19	45520010	45520010	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45520010	45520010	C	A	SNP	C19orf47	NM_178830	human	genbank	54_36p	-1	predicted	missense	c.687	p.K229N	1	NULL	NULL	-	no_errors
C19orf47	126526	broad.mit.edu	36	19	45526256	45526256	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45526256	45526256	G	A	SNP	C19orf47	NM_178830	human	genbank	54_36p	-1	predicted	missense	c.253	p.P85S	1	NULL	NULL	-	no_errors
HIPK4	147746	broad.mit.edu	36	19	45587617	45587617	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45587617	45587617	G	A	SNP	HIPK4	NM_144685	human	genbank	54_36p	-1	provisional	silent	c.33	p.Y11	0.97	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PRX	57716	broad.mit.edu	36	19	45593631	45593631	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45593631	45593631	G	A	SNP	PRX	NM_181882	human	genbank	54_36p	-1	reviewed	missense	c.2468	p.A823V	0.02	NULL	"HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors
PRX	57716	broad.mit.edu	36	19	45594452	45594452	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45594452	45594452	C	T	SNP	PRX	NM_181882	human	genbank	54_36p	-1	reviewed	silent	c.1647	p.P549	0.06	NULL	"HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like"	-	no_errors
SPTBN4	57731	broad.mit.edu	36	19	45695272	45695272	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45695272	45695272	C	T	SNP	SPTBN4	NM_020971	human	genbank	54_36p	1	reviewed	silent	c.705	p.S235	0.99	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SPTBN4	57731	broad.mit.edu	36	19	45730457	45730457	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45730457	45730457	G	A	SNP	SPTBN4	NM_020971	human	genbank	54_36p	1	reviewed	missense	c.4034	p.R1345Q	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like"	-	no_errors
SPTBN4	57731	broad.mit.edu	36	19	45764084	45764084	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45764084	45764084	C	T	SNP	SPTBN4	NM_020971	human	genbank	54_36p	1	reviewed	silent	c.6315	p.S2105	1	"HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat"	"PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like"	-	no_errors
SHKBP1	92799	broad.mit.edu	36	19	45786835	45786835	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45786835	45786835	C	T	SNP	SHKBP1	NM_138392	human	genbank	54_36p	1	validated	silent	c.1500	p.Y500	1	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1"	-	no_errors
NUMBL	9253	broad.mit.edu	36	19	45875163	45875163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	45875163	45875163	C	T	SNP	NUMBL	NM_004756	human	genbank	54_36p	-1	validated	missense	c.544	p.E182K	1	"superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID"	"superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,HMMPfam_NumbF"	-	no_errors
ITPKC	80271	broad.mit.edu	36	19	45927036	45927036	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	45927036	45927036	C	G	SNP	ITPKC	NM_025194	human	genbank	54_36p	1	provisional	missense	c.1345	p.L449V	1	"HMMPfam_IPK,superfamily_SSF56104"	"HMMPfam_IPK,superfamily_SSF56104"	-	no_errors
EGLN2	112398	broad.mit.edu	36	19	45998876	45998876	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	45998876	45998876	C	T	SNP	EGLN2	NM_053046	human	genbank	54_36p	1	reviewed	missense	c.559	p.R187W	1	NULL	"HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy"	-	no_errors
EGLN2	112398	broad.mit.edu	36	19	46004333	46004333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	46004333	46004333	G	A	SNP	EGLN2	NM_053046	human	genbank	54_36p	1	reviewed	missense	c.877	p.G293R	1	"HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702"	"HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702"	-	no_errors
CYP2A6	1548	broad.mit.edu	36	19	46042460	46042460	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	46042460	46042460	T	G	SNP	CYP2A6	NM_000762	human	genbank	54_36p	-1	reviewed	missense	c.1219	p.N407H	0.08	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2A6	1548	broad.mit.edu	36	19	46044794	46044794	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	46044794	46044794	G	T	SNP	CYP2A6	NM_000762	human	genbank	54_36p	-1	reviewed	silent	c.657	p.L219	0.98	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2A7	1549	broad.mit.edu	36	19	46075089	46075089	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	46075089	46075089	C	G	SNP	CYP2A7	NM_000764	human	genbank	54_36p	-1	reviewed	missense	c.1007	p.G336A	0.97	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2A7	1549	broad.mit.edu	36	19	46076681	46076681	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	46076681	46076681	G	T	SNP	CYP2A7	NM_000764	human	genbank	54_36p	-1	reviewed	missense	c.655	p.L219I	0.98	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2A13	1553	broad.mit.edu	36	19	46286230	46286230	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	46286230	46286230	G	A	SNP	CYP2A13	NM_000766	human	genbank	54_36p	1	reviewed	missense	c.14	p.G5E	0.19	NULL	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2A13	1553	broad.mit.edu	36	19	46286716	46286716	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	46286716	46286716	C	T	SNP	CYP2A13	NM_000766	human	genbank	54_36p	1	reviewed	missense	c.223	p.P75S	0	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2A13	1553	broad.mit.edu	36	19	46287833	46287833	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	46287833	46287833	C	G	SNP	CYP2A13	NM_000766	human	genbank	54_36p	1	reviewed	missense	c.385	p.R129G	0.81	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
CYP2F1	1572	broad.mit.edu	36	19	46325669	46325669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	46325669	46325669	T	C	SNP	CYP2F1	NM_000774	human	genbank	54_36p	1	reviewed	missense	c.1318	p.S440P	0.63	"HMMPfam_p450,superfamily_Cytochrome P450"	"HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450"	-	no_errors
AXL	558	broad.mit.edu	36	19	46417207	46417207	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	46417207	46417207	T	G	SNP	AXL	NM_021913	human	genbank	54_36p	1	reviewed	missense	c.70	p.C24G	0.03	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
CEACAM7	1087	broad.mit.edu	36	19	46879723	46879723	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	46879723	46879723	C	T	SNP	CEACAM7	NM_006890	human	genbank	54_36p	-1	provisional	nonsense	c.539	p.W180*	0.01	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
CEACAM5	1048	broad.mit.edu	36	19	46915842	46915842	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	46915842	46915842	T	A	SNP	CEACAM5	NM_004363	human	genbank	54_36p	1	validated	missense	c.1646	p.L549Q	0.07	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
LYPD4	147719	broad.mit.edu	36	19	47033123	47033123	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47033123	47033123	T	G	SNP	LYPD4	NM_173506	human	genbank	54_36p	-1	validated	silent	c.675	p.A225	0	NULL	HMMPfam_UPAR_LY6	-	no_errors
CD79A	973	broad.mit.edu	36	19	47075547	47075547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	47075547	47075547	C	T	SNP	CD79A	NM_001783	human	genbank	54_36p	1	reviewed	missense	c.482	p.T161M	0.9	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ITAM,HMMSmart_SM00077"	-	no_errors
ARHGEF1	9138	broad.mit.edu	36	19	47080381	47080381	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47080381	47080381	T	A	SNP	ARHGEF1	NM_199002	human	genbank	54_36p	1	reviewed	missense	c.7	p.S3T	0.7	NULL	"HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
ATP1A3	478	broad.mit.edu	36	19	47164836	47164836	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	47164836	47164836	C	A	SNP	ATP1A3	NM_152296	human	genbank	54_36p	-1	reviewed	missense	c.2760	p.Q920H	1	"superfamily_SSF81665,HMMPfam_Cation_ATPase_C"	"HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C"	-	no_errors
GRIK5	2901	broad.mit.edu	36	19	47261274	47261274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47261274	47261274	C	T	SNP	GRIK5	NM_002088	human	genbank	54_36p	-1	reviewed	missense	c.185	p.R62Q	1	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
POU2F2	5452	broad.mit.edu	36	19	47288114	47288114	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47288114	47288114	G	T	SNP	POU2F2	NM_002698	human	genbank	54_36p	-1	validated	missense	c.1299	p.S433R	1	NULL	"HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
POU2F2	5452	broad.mit.edu	36	19	47291605	47291605	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47291605	47291605	G	A	SNP	POU2F2	NM_002698	human	genbank	54_36p	-1	validated	missense	c.838	p.R280W	1	superfamily_Homeodomain_like	"HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,superfamily_Lambda_like_DNA,PatternScan_HOMEOBOX_1"	-	no_errors
DEDD2	162989	broad.mit.edu	36	19	47405794	47405794	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47405794	47405794	G	A	SNP	DEDD2	NM_133328	human	genbank	54_36p	-1	provisional	missense	c.487	p.R163W	1	NULL	"superfamily_DEATH domain,HMMSmart_SM00031,HMMPfam_DED"	-	no_errors
GSK3A	2931	broad.mit.edu	36	19	47426792	47426792	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47426792	47426792	G	A	SNP	GSK3A	NM_019884	human	genbank	54_36p	-1	validated	silent	c.1446	p.S482	0.99	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
GSK3A	2931	broad.mit.edu	36	19	47428573	47428573	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47428573	47428573	G	C	SNP	GSK3A	NM_019884	human	genbank	54_36p	-1	validated	missense	c.1200	p.H400Q	1	"HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase"	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CIC	23152	broad.mit.edu	36	19	47482805	47482805	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47482805	47482805	G	C	SNP	CIC	NM_015125	human	genbank	54_36p	1	validated	missense	c.110	p.W37S	1	NULL	"superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box"	-	no_errors
CIC	23152	broad.mit.edu	36	19	47485319	47485319	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47485319	47485319	G	C	SNP	CIC	NM_015125	human	genbank	54_36p	1	validated	missense	c.1281	p.Q427H	1	NULL	"HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box"	-	no_errors
CIC	23152	broad.mit.edu	36	19	47490052	47490052	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47490052	47490052	C	T	SNP	CIC	NM_015125	human	genbank	54_36p	1	validated	missense	c.4166	p.S1389F	1	NULL	"HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box"	-	no_errors
PAFAH1B3	5050	broad.mit.edu	36	19	47493264	47493264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47493264	47493264	G	A	SNP	PAFAH1B3	NM_002573	human	genbank	54_36p	-1	reviewed	missense	c.502	p.R168W	0.56	"superfamily_SGNH hydrolase,HMMPfam_Lipase_GDSL"	"superfamily_SGNH hydrolase,HMMPfam_Lipase_GDSL"	-	no_errors
PRR19	284338	broad.mit.edu	36	19	47505840	47505840	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2408-01A-01W-0799-08	TCGA-25-2408-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47505840	47505840	G	C	SNP	PRR19	NM_199285	human	genbank	54_36p	1	validated	missense	c.264	p.R88S	1	NULL	NULL	-	no_errors
MEGF8	1954	broad.mit.edu	36	19	47531122	47531122	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47531122	47531122	G	A	SNP	MEGF8	NM_001410	human	genbank	54_36p	1	validated	silent	c.654	p.V218	1	superfamily_Gal_oxid_central	###############################################################################################################################################################################################################################################################	-	no_errors
MEGF8	1954	broad.mit.edu	36	19	47546353	47546353	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	47546353	47546353	C	T	SNP	MEGF8	NM_001410	human	genbank	54_36p	1	validated	missense	c.2512	p.R838W	1	HMMSmart_PSI	###############################################################################################################################################################################################################################################################	-	no_errors
LIPE	3991	broad.mit.edu	36	19	47598919	47598919	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47598919	47598919	C	T	SNP	LIPE	NM_005357	human	genbank	54_36p	-1	reviewed	missense	c.2647	p.G883R	0.08	"superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3"	"HMMPfam_HSL_N,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_GDXG_HIS,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER"	-	no_errors
CEACAM1	634	broad.mit.edu	36	19	47717295	47717295	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47717295	47717295	A	C	SNP	CEACAM1	NM_001712	human	genbank	54_36p	-1	reviewed	missense	c.922	p.C308G	0.01	HMMSmart_SM00409	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CEACAM8	1088	broad.mit.edu	36	19	47785548	47785548	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	47785548	47785548	G	A	SNP	CEACAM8	NM_001816	human	genbank	54_36p	-1	validated	silent	c.604	p.L202	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
PSG1	5669	broad.mit.edu	36	19	48067793	48067793	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	48067793	48067793	G	T	SNP	PSG1	NM_006905	human	genbank	54_36p	-1	provisional	silent	c.675	p.A225	0	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
PSG1	5669	broad.mit.edu	36	19	48067936	48067936	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	19	48067936	48067936	A	T	SNP	PSG1	NM_006905	human	genbank	54_36p	-1	provisional	missense	c.532	p.Y178N	0.01	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
PSG7	5676	broad.mit.edu	36	19	48125533	48125533	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	48125533	48125533	G	T	SNP	PSG7	NM_002783	human	genbank	54_36p	-1	reviewed	missense	c.610	p.L204I	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	pseudogene
PSG11	5680	broad.mit.edu	36	19	48214999	48214999	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	48214999	48214999	G	C	SNP	PSG11	NM_002785	human	genbank	54_36p	-1	validated	missense	c.472	p.P158A	0.01	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
PSG2	5670	broad.mit.edu	36	19	48277104	48277104	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	48277104	48277104	A	T	SNP	PSG2	NM_031246	human	genbank	54_36p	-1	validated	missense	c.199	p.W67R	0.11	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2"	-	no_errors
PSG4	5672	broad.mit.edu	36	19	48393988	48393988	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	48393988	48393988	C	G	SNP	PSG4	NM_002780	human	genbank	54_36p	-1	validated	splice_site	c.709+1	e3+1	0.73	-	-	-	no_errors
PSG9	5678	broad.mit.edu	36	19	48463817	48463818	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	-	-	C	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	48463817	48463818	-	C	INS	PSG9	NM_002784	human	genbank	54_36p	-1	validated	frame_shift_ins	c.389_388	p.E130fs	0.000:0.000	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
TEX101	83639	broad.mit.edu	36	19	48612233	48612233	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	48612233	48612233	A	T	SNP	TEX101	NM_031451	human	genbank	54_36p	1	validated	silent	c.261	p.A87	0.93	NULL	HMMPfam_UPAR_LY6	-	no_errors
IRGQ	126298	broad.mit.edu	36	19	48789034	48789034	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	48789034	48789034	T	G	SNP	IRGQ	NM_001007561	human	genbank	54_36p	-1	validated	missense	c.856	p.T286P	0	NULL	NULL	-	no_errors
KCNN4	3783	broad.mit.edu	36	19	48976695	48976695	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	48976695	48976695	C	T	SNP	KCNN4	NM_002250	human	genbank	54_36p	-1	reviewed	silent	c.159	p.S53	0.97	HMMPfam_SK_channel	"HMMPfam_SK_channel,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_Small-conductance potassium channel,HMMPfam_CaMBD"	-	no_errors
KCNN4	3783	broad.mit.edu	36	19	48976721	48976721	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	48976721	48976721	C	T	SNP	KCNN4	NM_002250	human	genbank	54_36p	-1	reviewed	missense	c.133	p.E45K	0.99	HMMPfam_SK_channel	"HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,HMMPfam_SK_channel,HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels"	-	no_errors
ZNF45	7596	broad.mit.edu	36	19	49110073	49110073	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	49110073	49110073	C	G	SNP	ZNF45	NM_003425	human	genbank	54_36p	-1	provisional	missense	c.1355	p.G452A	0.18	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF222	7673	broad.mit.edu	36	19	49227973	49227973	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	49227973	49227973	G	T	SNP	ZNF222	NM_013360	human	genbank	54_36p	1	validated	missense	c.306	p.Q102H	0	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF224	7767	broad.mit.edu	36	19	49302639	49302639	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	49302639	49302639	C	G	SNP	ZNF224	NM_013398	human	genbank	54_36p	1	provisional	missense	c.486	p.H162Q	0	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF234	10780	broad.mit.edu	36	19	49353580	49353580	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	49353580	49353580	C	A	SNP	ZNF234	NM_006630	human	genbank	54_36p	1	validated	missense	c.1571	p.A524D	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF227	7770	broad.mit.edu	36	19	49431520	49431520	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	49431520	49431520	A	C	SNP	ZNF227	NM_182490	human	genbank	54_36p	1	provisional	missense	c.1097	p.N366T	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF227	7770	broad.mit.edu	36	19	49431597	49431597	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	49431597	49431597	A	G	SNP	ZNF227	NM_182490	human	genbank	54_36p	1	provisional	missense	c.1174	p.S392G	0	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF235	9310	broad.mit.edu	36	19	49483755	49483755	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	49483755	49483755	A	T	SNP	ZNF235	NM_004234	human	genbank	54_36p	-1	reviewed	missense	c.1673	p.L558H	0.89	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFP112	7771	broad.mit.edu	36	19	49523493	49523493	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	49523493	49523493	T	C	SNP	ZFP112	NM_001083335	human	genbank	54_36p	-1	validated	missense	c.2675	p.E892G	0	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFP112	7771	broad.mit.edu	36	19	49523684	49523684	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	49523684	49523684	T	C	SNP	ZFP112	NM_001083335	human	genbank	54_36p	-1	validated	silent	c.2484	p.T828	0.94	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF285	26974	broad.mit.edu	36	19	49582595	49582595	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	49582595	49582595	C	T	SNP	ZNF285A	NM_152354	human	genbank	54_36p	-1	validated	missense	c.1652	p.R551H	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF180	7733	broad.mit.edu	36	19	49672811	49672811	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	49672811	49672811	G	A	SNP	ZNF180	NM_013256	human	genbank	54_36p	-1	validated	missense	c.1727	p.P576L	0.99	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
BCL3	602	broad.mit.edu	36	19	49954678	49954678	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	49954678	49954678	C	A	SNP	BCL3	NM_005178	human	genbank	54_36p	1	reviewed	missense	c.1307	p.P436Q	0.92	NULL	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
CBLC	23624	broad.mit.edu	36	19	49976091	49976092	+	Missense_Mutation	DNP	TG	TG	GA	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	49976091	49976092	TG	GA	DNP	CBLC	NM_012116	human	genbank	54_36p	1	validated	missense	c.443_444	p.M148R	0.890:0.909	"HMMPfam_Cbl_N2,superfamily_EF-hand"	"HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1"	-	no_errors
RELB	5971	broad.mit.edu	36	19	50217161	50217161	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	50217161	50217161	G	A	SNP	RELB	NM_006509	human	genbank	54_36p	1	validated	missense	c.515	p.C172Y	0.96	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD"	"superfamily_P53_like_DNA_bnd,HMMPfam_RHD,PatternScan_REL_1,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG"	-	no_errors
PPP1R13L	10848	broad.mit.edu	36	19	50593124	50593124	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	50593124	50593124	C	A	SNP	PPP1R13L	NM_006663	human	genbank	54_36p	-1	validated	silent	c.177	p.P59	0	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326"	-	no_errors
CD3EAP	10849	broad.mit.edu	36	19	50602266	50602266	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	50602266	50602266	G	A	SNP	CD3EAP	NM_012099	human	genbank	54_36p	1	provisional	missense	c.97	p.E33K	1	NULL	HMMPfam_RNA_polI_A34	-	no_errors
RTN2	6253	broad.mit.edu	36	19	50684556	50684556	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	50684556	50684556	C	T	SNP	RTN2	NM_005619	human	genbank	54_36p	-1	reviewed	missense	c.1129	p.V377M	1	HMMPfam_Reticulon	HMMPfam_Reticulon	-	no_errors
RTN2	6253	broad.mit.edu	36	19	50689411	50689411	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	50689411	50689411	G	C	SNP	RTN2	NM_005619	human	genbank	54_36p	-1	reviewed	missense	c.667	p.R223G	0.17	NULL	HMMPfam_Reticulon	-	no_errors
VASP	7408	broad.mit.edu	36	19	50713107	50713107	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	50713107	50713107	C	G	SNP	VASP	NM_003370	human	genbank	54_36p	1	reviewed	silent	c.258	p.R86	1	"HMMPfam_WH1,superfamily_SSF50729"	"HMMPfam_WH1,superfamily_SSF50729,HMMPfam_VASP_tetra"	-	no_errors
GPR4	2828	broad.mit.edu	36	19	50786019	50786019	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	50786019	50786019	T	C	SNP	GPR4	NM_005282	human	genbank	54_36p	-1	validated	missense	c.946	p.M316V	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FBXO46	23403	broad.mit.edu	36	19	50907058	50907058	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	50907058	50907058	C	T	SNP	FBXO46	NM_001080469	human	genbank	54_36p	-1	provisional	silent	c.1536	p.V512	1	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256"	"superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256"	-	no_errors
FBXO46	23403	broad.mit.edu	36	19	50907085	50907085	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	50907085	50907085	G	A	SNP	FBXO46	NM_001080469	human	genbank	54_36p	-1	provisional	silent	c.1509	p.F503	1	"HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain"	"HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain"	-	no_errors
RSPH6A	81492	broad.mit.edu	36	19	51009836	51009837	+	Missense_Mutation	DNP	CC	CC	AA	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	51009836	51009837	CC	AA	DNP	RSHL1	NM_030785	human	genbank	54_36p	-1	reviewed	missense	c.439_438	p.LG146FC	0.001:0.000	NULL	HMMPfam_Radial_spoke	-	no_errors
SYMPK	8189	broad.mit.edu	36	19	51030228	51030228	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	51030228	51030228	C	T	SNP	SYMPK	NM_004819	human	genbank	54_36p	-1	reviewed	silent	c.1341	p.K447	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
FOXA3	3171	broad.mit.edu	36	19	51067737	51067737	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	51067737	51067737	C	T	SNP	FOXA3	NM_004497	human	genbank	54_36p	1	reviewed	missense	c.634	p.R212C	1	"superfamily_SSF46785,HMMPfam_Fork_head"	"HMMPfam_Fork_head_N,HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C"	-	no_errors
FOXA3	3171	broad.mit.edu	36	19	51067895	51067895	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	51067895	51067895	C	T	SNP	FOXA3	NM_004497	human	genbank	54_36p	1	reviewed	silent	c.792	p.G264	0.02	NULL	"HMMPfam_Fork_head,HMMSmart_FH,HMMPfam_Fork_head_N,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C,superfamily_SSF46785"	-	no_errors
PGLYRP1	8993	broad.mit.edu	36	19	51214337	51214337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	51214337	51214337	C	T	SNP	PGLYRP1	NM_005091	human	genbank	54_36p	-1	provisional	silent	c.590	p.*197	0.09	NULL	"superfamily_Amidase_2,HMMSmart_PGRP,HMMSmart_Ami_2,HMMPfam_Amidase_2"	-	no_errors
PGLYRP1	8993	broad.mit.edu	36	19	51214470	51214470	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	51214470	51214470	C	G	SNP	PGLYRP1	NM_005091	human	genbank	54_36p	-1	provisional	missense	c.457	p.A153P	0.02	"HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP"	"HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP"	-	no_errors
PPP5C	5536	broad.mit.edu	36	19	51542232	51542233	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	51542232	51542233	-	C	INS	PPP5C	NM_006247	human	genbank	54_36p	1	provisional	frame_shift_ins	c.39_40	p.R15fs	1.000:0.999	NULL	"HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE"	-	no_errors
CCDC8	83987	broad.mit.edu	36	19	51607051	51607051	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	51607051	51607051	C	G	SNP	CCDC8	NM_032040	human	genbank	54_36p	-1	validated	missense	c.857	p.G286A	0	NULL	NULL	-	no_errors
CALM3	808	broad.mit.edu	36	19	51804235	51804235	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	51804235	51804235	G	C	SNP	CALM3	NM_005184	human	genbank	54_36p	1	validated	missense	c.435	p.M145I	1	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand"	"superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
PTGIR	5739	broad.mit.edu	36	19	51818885	51818885	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	51818885	51818885	G	A	SNP	PTGIR	NM_000960	human	genbank	54_36p	-1	reviewed	silent	c.438	p.F146	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
DACT3	147906	broad.mit.edu	36	19	51843780	51843780	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	51843780	51843780	G	T	SNP	DACT3	NM_145056	human	genbank	54_36p	-1	validated	silent	c.1014	p.A338	1	NULL	NULL	-	no_errors
DACT3	147906	broad.mit.edu	36	19	51843806	51843806	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	51843806	51843806	C	T	SNP	DACT3	NM_145056	human	genbank	54_36p	-1	validated	missense	c.988	p.G330R	0.98	NULL	NULL	-	no_errors
PRKD2	25865	broad.mit.edu	36	19	51876831	51876831	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	51876831	51876831	C	G	SNP	PRKD2	NM_001079880	human	genbank	54_36p	-1	reviewed	missense	c.1986	p.L662F	1	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	###############################################################################################################################################################################################################################################################	-	no_errors
PRKD2	25865	broad.mit.edu	36	19	51899265	51899265	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	51899265	51899265	C	G	SNP	PRKD2	NM_001079880	human	genbank	54_36p	-1	reviewed	splice_site	c.889+1	e5+1	1	-	-	-	no_errors
GRLF1	2909	broad.mit.edu	36	19	52115114	52115115	+	Missense_Mutation	DNP	CC	CC	TT	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52115114	52115115	CC	TT	DNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	missense	c.1342_1343	p.P448F	1.000:0.997	HMMSmart_SM00441	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
GRLF1	2909	broad.mit.edu	36	19	52115528	52115528	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52115528	52115528	C	T	SNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	nonsense	c.1756	p.Q586*	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GRLF1	2909	broad.mit.edu	36	19	52115784	52115784	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	52115784	52115784	T	A	SNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	missense	c.2012	p.L671Q	0.8	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GRLF1	2909	broad.mit.edu	36	19	52116726	52116726	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52116726	52116726	C	G	SNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	nonsense	c.2954	p.S985*	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GRLF1	2909	broad.mit.edu	36	19	52117205	52117205	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52117205	52117205	C	T	SNP	GRLF1	NM_004491	human	genbank	54_36p	1	reviewed	nonsense	c.3433	p.R1145*	1	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ZC3H4	23211	broad.mit.edu	36	19	52261899	52261899	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52261899	52261899	C	T	SNP	ZC3H4	NM_015168	human	genbank	54_36p	-1	validated	missense	c.3466	p.A1156T	0.68	NULL	"HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1"	-	no_errors
ZC3H4	23211	broad.mit.edu	36	19	52262365	52262365	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52262365	52262365	C	T	SNP	ZC3H4	NM_015168	human	genbank	54_36p	-1	validated	silent	c.3000	p.A1000	0.38	NULL	"HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1"	-	no_errors
ZC3H4	23211	broad.mit.edu	36	19	52262393	52262393	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52262393	52262393	T	C	SNP	ZC3H4	NM_015168	human	genbank	54_36p	-1	validated	missense	c.2972	p.K991R	1	NULL	"HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1"	-	no_errors
ZC3H4	23211	broad.mit.edu	36	19	52285109	52285109	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52285109	52285109	G	C	SNP	ZC3H4	NM_015168	human	genbank	54_36p	-1	validated	missense	c.670	p.L224V	1	NULL	"HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1"	-	no_errors
CCDC9	26093	broad.mit.edu	36	19	52466411	52466425	+	In_Frame_Del	DEL	ACGAGGGGGAAGAGA	-	ACGAGGGGGAAGAGA	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	ACGAGGGGGAAGAGA	ACGAGGGGGAAGAGA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	52466411	52466425	ACGAGGGGGAAGAGA	-	DEL	CCDC9	NM_015603	human	genbank	54_36p	1	validated	in_frame_del	c.1232_1246	p.ENEGE415in_frame_del	0.980:0.943:0.952:0.956:0.948:0.947:0.939:0.923:0.929:0.880:0.862:0.898:0.885:0.662:0.634	NULL	NULL	"(deletion:cds_exon[52466371,52466775])"	no_errors
DHX34	9704	broad.mit.edu	36	19	52548282	52548282	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52548282	52548282	A	T	SNP	DHX34	NM_014681	human	genbank	54_36p	1	reviewed	missense	c.155	p.Q52L	0.91	NULL	"HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605,PatternScan_RUBREDOXIN"	-	no_errors
DHX34	9704	broad.mit.edu	36	19	52548574	52548574	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52548574	52548574	T	G	SNP	DHX34	NM_014681	human	genbank	54_36p	1	reviewed	missense	c.447	p.F149L	0.36	HMMSmart_SM00487	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,PatternScan_RUBREDOXIN,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
DHX34	9704	broad.mit.edu	36	19	52562129	52562129	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52562129	52562129	A	C	SNP	DHX34	NM_014681	human	genbank	54_36p	1	reviewed	silent	c.1650	p.P550	0.08	superfamily_P-loop containing nucleoside triphosphate hydrolases	"HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,PatternScan_RUBREDOXIN,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
SLC8A2	6543	broad.mit.edu	36	19	52627435	52627435	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52627435	52627435	C	T	SNP	SLC8A2	NM_015063	human	genbank	54_36p	-1	validated	silent	c.2190	p.T730	1	NULL	"HMMPfam_Na_Ca_ex,HMMPfam_Calx-beta,HMMSmart_SM00237"	-	no_errors
KPTN	11133	broad.mit.edu	36	19	52671749	52671749	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	52671749	52671749	G	C	SNP	KPTN	NM_007059	human	genbank	54_36p	-1	validated	missense	c.1034	p.S345W	0	NULL	NULL	-	no_errors
KPTN	11133	broad.mit.edu	36	19	52675858	52675858	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52675858	52675858	G	A	SNP	KPTN	NM_007059	human	genbank	54_36p	-1	validated	silent	c.570	p.L190	1	NULL	NULL	-	no_errors
EHD2	30846	broad.mit.edu	36	19	52911793	52911793	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52911793	52911793	G	T	SNP	EHD2	NM_014601	human	genbank	54_36p	1	reviewed	nonsense	c.112	p.E38*	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1"	-	no_errors
GLTSCR2	29997	broad.mit.edu	36	19	52940675	52940675	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52940675	52940675	G	C	SNP	GLTSCR2	NM_015710	human	genbank	54_36p	1	provisional	missense	c.47	p.S16T	0.19	NULL	HMMPfam_Nop53	-	no_errors
TPRX1	284355	broad.mit.edu	36	19	52997077	52997078	+	Missense_Mutation	DNP	GC	GC	AA	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	52997077	52997078	GC	AA	DNP	TPRX1	NM_198479	human	genbank	54_36p	-1	validated	missense	c.1003_1002	p.WP334CS	0.009:0.009	NULL	NULL	-	no_errors
PLA2G4C	8605	broad.mit.edu	36	19	53248188	53248188	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	53248188	53248188	G	A	SNP	PLA2G4C	NM_003706	human	genbank	54_36p	-1	provisional	silent	c.1458	p.Y486	0	"HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase"	"HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase,HMMPfam_PLA2_B"	-	no_errors
GRIN2D	2906	broad.mit.edu	36	19	53609175	53609175	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	53609175	53609175	G	C	SNP	GRIN2D	NM_000836	human	genbank	54_36p	1	reviewed	splice_site	c.1200+1	e3+1	1	-	-	-	no_errors
GRIN2D	2906	broad.mit.edu	36	19	53616922	53616922	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	53616922	53616922	G	A	SNP	GRIN2D	NM_000836	human	genbank	54_36p	1	reviewed	silent	c.2160	p.K720	0.99	"superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan"	"superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
GRIN2D	2906	broad.mit.edu	36	19	53616989	53616989	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	53616989	53616989	G	A	SNP	GRIN2D	NM_000836	human	genbank	54_36p	1	reviewed	missense	c.2227	p.E743K	1	"HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850"	"HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850"	-	no_errors
GRWD1	83743	broad.mit.edu	36	19	53648089	53648089	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	53648089	53648089	G	A	SNP	GRWD1	NM_031485	human	genbank	54_36p	1	provisional	missense	c.1336	p.V446I	1	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
CYTH2	9266	broad.mit.edu	36	19	53667472	53667472	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	53667472	53667472	G	T	SNP	CYTH2	NM_017457	human	genbank	54_36p	1	reviewed	missense	c.313	p.G105W	1	"superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222"	"superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
LMTK3	114783	broad.mit.edu	36	19	53686180	53686180	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	53686180	53686180	C	A	SNP	LMTK3	NM_001080434	human	genbank	54_36p	-1	provisional	missense	c.4450	p.A1484S	0.99	NULL	"superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
LMTK3	114783	broad.mit.edu	36	19	53686273	53686273	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	53686273	53686273	G	A	SNP	LMTK3	NM_001080434	human	genbank	54_36p	-1	provisional	missense	c.4357	p.P1453S	0.99	NULL	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
LMTK3	114783	broad.mit.edu	36	19	53692604	53692606	+	Missense_Mutation	TNP	GGG	GGG	TTT	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	GGG	GGG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	53692604	53692606	GGG	TTT	TNP	LMTK3	NM_001080434	human	genbank	54_36p	-1	provisional	missense	c.3619_3621	p.P1207K	0.998:0.999:0.998	HMMSmart_SM00220	"HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
FAM83E	54854	broad.mit.edu	36	19	53808235	53808235	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	53808235	53808235	C	T	SNP	FAM83E	NM_017708	human	genbank	54_36p	-1	validated	silent	c.207	p.A69	0	HMMPfam_DUF1669	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
FUT1	2523	broad.mit.edu	36	19	53945323	53945323	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	53945323	53945323	G	A	SNP	FUT1	NM_000148	human	genbank	54_36p	-1	reviewed	missense	c.1028	p.A343V	0.22	HMMPfam_Glyco_transf_11	HMMPfam_Glyco_transf_11	-	no_errors
PLEKHA4	57664	broad.mit.edu	36	19	54036374	54036374	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54036374	54036374	C	T	SNP	PLEKHA4	NM_020904	human	genbank	54_36p	-1	provisional	silent	c.1749	p.P583	0	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
DHDH	27294	broad.mit.edu	36	19	54131213	54131213	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	54131213	54131213	A	T	SNP	DHDH	NM_014475	human	genbank	54_36p	1	reviewed	missense	c.315	p.E105D	1	"HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-bd"	"HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-bd,superfamily_SSF55347,HMMPfam_GFO_IDH_MocA_C"	-	no_errors
GYS1	2997	broad.mit.edu	36	19	54177339	54177339	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	54177339	54177339	G	C	SNP	GYS1	NM_002103	human	genbank	54_36p	-1	provisional	silent	c.1047	p.L349	1	"HMMPfam_Glycogen_syn,superfamily_SSF53756"	"HMMPfam_Glycogen_syn,superfamily_SSF53756"	-	no_errors
GYS1	2997	broad.mit.edu	36	19	54180952	54180952	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54180952	54180952	G	A	SNP	GYS1	NM_002103	human	genbank	54_36p	-1	provisional	silent	c.645	p.A215	0.98	"HMMPfam_Glycogen_syn,superfamily_SSF53756"	"HMMPfam_Glycogen_syn,superfamily_SSF53756"	-	no_errors
HRC	3270	broad.mit.edu	36	19	54349106	54349106	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54349106	54349106	T	C	SNP	HRC	NM_002152	human	genbank	54_36p	-1	reviewed	missense	c.1201	p.S401G	0.35	NULL	HMMPfam_Hist_rich_Ca-bd	-	no_errors
TRPM4	54795	broad.mit.edu	36	19	54377841	54377876	+	In_Frame_Del	DEL	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	-	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	54377841	54377876	CAAAGCCCCAGCCCTAAAAGGGGGAGCTGCGGAGCT	-	DEL	TRPM4	NM_017636	human	genbank	54_36p	1	provisional	in_frame_del	c.1458_1493	p.KAPALKGGAAEL487in_frame_del	0.028:0.028:0.016:0.003:0.002:0.006:0.001:0.000:0.001:0.002:0.030:0.108:0.099:0.093:0.001:0.001:0.006:0.007:0.006:0.003:0.002:0.001:0.000:0.000:0.000:0.000:0.004:0.000:0.000:0.000:0.000:0.001:0.001:0.002:0.003:0.005	NULL	HMMPfam_Ion_trans	"(deletion:cds_exon[54377647,54377991])"	no_errors
TEAD2	8463	broad.mit.edu	36	19	54554517	54554517	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54554517	54554517	C	T	SNP	TEAD2	NM_003598	human	genbank	54_36p	-1	provisional	missense	c.284	p.R95Q	0.99	"HMMPfam_TEA,HMMSmart_TEA,PatternScan_TEA_1"	"HMMPfam_TEA,HMMSmart_TEA,PatternScan_TEA_1"	-	no_errors
FCGRT	2217	broad.mit.edu	36	19	54709057	54709057	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54709057	54709057	C	G	SNP	FCGRT	NM_004107	human	genbank	54_36p	1	provisional	missense	c.180	p.S60R	0.75	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain"	"HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC"	-	no_errors
NOSIP	51070	broad.mit.edu	36	19	54751492	54751492	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	54751492	54751492	C	T	SNP	NOSIP	NM_015953	human	genbank	54_36p	-1	provisional	missense	c.728	p.G243E	1	superfamily_SSF57850	"superfamily_SSF57850,HMMPfam_U-box"	-	no_errors
SCAF1	58506	broad.mit.edu	36	19	54846138	54846138	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	54846138	54846138	T	A	SNP	SCAF1	NM_021228	human	genbank	54_36p	1	provisional	missense	c.680	p.I227N	1	NULL	NULL	-	no_errors
IRF3	3661	broad.mit.edu	36	19	54858442	54858442	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54858442	54858442	G	A	SNP	IRF3	NM_001571	human	genbank	54_36p	-1	validated	missense	c.307	p.P103S	1	"HMMSmart_IRF,superfamily_SSF46785,HMMPfam_IRF"	"HMMSmart_IRF,superfamily_SSF46785,HMMPfam_IRF,PatternScan_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3"	-	no_errors
PRMT1	3276	broad.mit.edu	36	19	54881708	54881708	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	54881708	54881708	G	A	SNP	PRMT1	NM_001536	human	genbank	54_36p	1	validated	silent	c.945	p.T315	0.83	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
CPT1C	126129	broad.mit.edu	36	19	54905876	54905876	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54905876	54905876	A	G	SNP	CPT1C	NM_152359	human	genbank	54_36p	1	provisional	missense	c.1816	p.T606A	1	"HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases"	"superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2"	-	no_errors
AP2A1	160	broad.mit.edu	36	19	54977629	54977629	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54977629	54977629	C	G	SNP	AP2A1	NM_014203	human	genbank	54_36p	1	reviewed	missense	c.309	p.N103K	1	"superfamily_ARM repeat,HMMPfam_Adaptin_N"	"superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain"	-	no_errors
AP2A1	160	broad.mit.edu	36	19	54987066	54987066	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	54987066	54987066	C	T	SNP	AP2A1	NM_014203	human	genbank	54_36p	1	reviewed	missense	c.536	p.S179L	1	"HMMPfam_Adaptin_N,superfamily_ARM repeat"	"HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptin_C,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Subdomain of clathrin and coatomer appendage domain,superfamily_Clathrin adaptor appendage domain,superfamily_ARM repeat"	-	no_errors
PTOV1	53635	broad.mit.edu	36	19	55049528	55049528	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55049528	55049528	G	A	SNP	PTOV1	NM_017432	human	genbank	54_36p	1	provisional	silent	c.225	p.G75	0.09	PatternScan_AA_TRNA_LIGASE_I	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
PNKP	11284	broad.mit.edu	36	19	55057676	55057676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55057676	55057676	G	T	SNP	PNKP	NM_007254	human	genbank	54_36p	-1	provisional	missense	c.867	p.D289E	0.98	"superfamily_SSF56784,HMMPfam_PNK3P"	"superfamily_SMAD_FHA,superfamily_SSF56784,HMMPfam_PNK3P,superfamily_SSF52540"	-	no_errors
IL4I1	259307	broad.mit.edu	36	19	55090198	55090198	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55090198	55090198	G	C	SNP	IL4I1	NM_172374	human	genbank	54_36p	-1	reviewed	missense	c.370	p.R124G	0.49	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
IL4I1	259307	broad.mit.edu	36	19	55091074	55091074	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55091074	55091074	G	C	SNP	IL4I1	NM_172374	human	genbank	54_36p	-1	reviewed	missense	c.128	p.S43C	0.19	NULL	"HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
SIGLEC11	114132	broad.mit.edu	36	19	55154478	55154478	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55154478	55154478	C	T	SNP	SIGLEC11	NM_052884	human	genbank	54_36p	-1	validated	silent	c.972	p.A324	0.06	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMPfam_I-set,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC"	-	no_errors
SIGLEC11	114132	broad.mit.edu	36	19	55155811	55155811	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55155811	55155811	G	C	SNP	SIGLEC11	NM_052884	human	genbank	54_36p	-1	validated	missense	c.234	p.N78K	0.05	"HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
SIGLEC11	114132	broad.mit.edu	36	19	55155842	55155842	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55155842	55155842	G	C	SNP	SIGLEC11	NM_052884	human	genbank	54_36p	-1	validated	missense	c.203	p.P68R	0	"HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin"	"PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
ZNF473	25888	broad.mit.edu	36	19	55241592	55241592	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55241592	55241592	C	T	SNP	ZNF473	NM_001006656	human	genbank	54_36p	1	validated	nonsense	c.2080	p.R694*	0.96	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MYH14	79784	broad.mit.edu	36	19	55471160	55471160	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55471160	55471160	G	T	SNP	MYH14	NM_001077186	human	genbank	54_36p	1	reviewed	missense	c.3469	p.V1157L	0.06	HMMPfam_Myosin_tail_1	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin"	-	no_errors
POLD1	5424	broad.mit.edu	36	19	55604717	55604717	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55604717	55604717	G	T	SNP	POLD1	NM_002691	human	genbank	54_36p	1	validated	silent	c.2136	p.P712	0.98	"HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B"	"superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B"	-	no_errors
POLD1	5424	broad.mit.edu	36	19	55610877	55610877	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55610877	55610877	C	T	SNP	POLD1	NM_002691	human	genbank	54_36p	1	validated	silent	c.2802	p.A934	0.98	"HMMPfam_DNA_pol_B,superfamily_SSF56672"	"HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,PatternScan_DNA_POLYMERASE_B,superfamily_SSF56672"	-	no_errors
POLD1	5424	broad.mit.edu	36	19	55612996	55612996	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55612996	55612996	C	G	SNP	POLD1	NM_002691	human	genbank	54_36p	1	validated	missense	c.3304	p.P1102A	0.3	NULL	"HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,PatternScan_DNA_POLYMERASE_B,superfamily_SSF56672"	-	no_errors
MYBPC2	4606	broad.mit.edu	36	19	55650245	55650245	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55650245	55650245	G	A	SNP	MYBPC2	NM_004533	human	genbank	54_36p	1	validated	missense	c.2083	p.E695K	1	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2"	-	no_errors
MYBPC2	4606	broad.mit.edu	36	19	55653989	55653989	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55653989	55653989	C	A	SNP	MYBPC2	NM_004533	human	genbank	54_36p	1	validated	missense	c.2509	p.P837T	1	"superfamily_FN_III-like,superfamily_SSF48726"	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726"	-	no_errors
SYT3	84258	broad.mit.edu	36	19	55827455	55827455	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55827455	55827455	C	A	SNP	SYT3	NM_032298	human	genbank	54_36p	-1	provisional	missense	c.574	p.G192W	0	NULL	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
SHANK1	50944	broad.mit.edu	36	19	55907073	55907073	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	55907073	55907073	C	A	SNP	SHANK1	NM_016148	human	genbank	54_36p	-1	validated	silent	c.903	p.L301	0.96	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	"HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2"	-	no_errors
CLEC11A	6320	broad.mit.edu	36	19	55920406	55920406	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	55920406	55920406	A	C	SNP	CLEC11A	NM_002975	human	genbank	54_36p	1	reviewed	missense	c.842	p.H281P	0.99	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C"	"superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1"	-	no_errors
KLK2	3817	broad.mit.edu	36	19	56073550	56073550	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	56073550	56073550	C	T	SNP	KLK2	NM_005551	human	genbank	54_36p	1	validated	missense	c.709	p.P237S	0	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
KLK7	5650	broad.mit.edu	36	19	56172756	56172756	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	56172756	56172756	C	T	SNP	KLK7	NM_005046	human	genbank	54_36p	-1	reviewed	missense	c.610	p.D204N	1	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_SER"	"HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER"	-	no_errors
NKG7	4818	broad.mit.edu	36	19	56567015	56567015	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	56567015	56567015	G	T	SNP	NKG7	NM_005601	human	genbank	54_36p	-1	validated	missense	c.430	p.L144I	0.08	HMMPfam_PMP22_Claudin	"PatternScan_PMP22_2,HMMPfam_PMP22_Claudin,PatternScan_PMP22_1"	-	no_errors
SIGLEC10	89790	broad.mit.edu	36	19	56609555	56609555	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	56609555	56609555	A	C	SNP	SIGLEC10	NM_033130	human	genbank	54_36p	-1	validated	missense	c.1642	p.F548V	0.03	NULL	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC"	-	no_errors
CEACAM18	729767	broad.mit.edu	36	19	56675630	56675631	+	Frame_Shift_Del	DEL	AC	-	AC	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	AC	AC	-	-	AC	AC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	56675630	56675631	AC	-	DEL	CEACAM18	NM_001080405	human	genbank	54_36p	1	provisional	frame_shift_del	c.467_468	p.N156fs	0.035:0.029	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"(deletion:cds_exon[56675399,56675746])"	no_errors
SIGLEC12	89858	broad.mit.edu	36	19	56693231	56693231	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	56693231	56693231	G	C	SNP	SIGLEC12	NM_053003	human	genbank	54_36p	-1	reviewed	missense	c.1258	p.L420V	0.03	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_ig"	-	no_errors
SIGLEC12	89858	broad.mit.edu	36	19	56694674	56694674	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	56694674	56694674	G	A	SNP	SIGLEC12	NM_053003	human	genbank	54_36p	-1	reviewed	missense	c.917	p.T306M	0.22	"HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
SIGLEC12	89858	broad.mit.edu	36	19	56695389	56695389	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	56695389	56695389	C	A	SNP	SIGLEC12	NM_033329	human	genbank	54_36p	-1	reviewed	missense	c.51	p.W17C	0	NULL	"HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726"	-	no_errors
FPR2	2358	broad.mit.edu	36	19	56964209	56964209	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	56964209	56964209	C	G	SNP	FPR2	NM_001005738	human	genbank	54_36p	1	validated	silent	c.486	p.L162	0.98	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
FPR3	2359	broad.mit.edu	36	19	57019316	57019316	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	57019316	57019316	G	T	SNP	FPR3	NM_002030	human	genbank	54_36p	1	validated	missense	c.503	p.S168I	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
ZNF615	284370	broad.mit.edu	36	19	57188208	57188208	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	57188208	57188208	A	T	SNP	ZNF615	NM_198480	human	genbank	54_36p	-1	provisional	missense	c.1933	p.F645I	0.76	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PPP2R1A	5518	broad.mit.edu	36	19	57406487	57406487	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	57406487	57406487	A	C	SNP	PPP2R1A	NM_014225	human	genbank	54_36p	1	reviewed	missense	c.433	p.T145P	1	superfamily_ARM repeat	"superfamily_ARM repeat,HMMPfam_HEAT"	-	no_errors
PPP2R1A	5518	broad.mit.edu	36	19	57407794	57407794	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	57407794	57407794	C	T	SNP	PPP2R1A	NM_014225	human	genbank	54_36p	1	reviewed	missense	c.547	p.R183W	1	"HMMPfam_HEAT,superfamily_ARM repeat"	"HMMPfam_HEAT,superfamily_ARM repeat"	-	no_errors
ZNF610	162963	broad.mit.edu	36	19	57561365	57561365	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	57561365	57561365	G	A	SNP	ZNF610	NM_173530	human	genbank	54_36p	1	provisional	missense	c.922	p.V308I	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF611	81856	broad.mit.edu	36	19	57900299	57900299	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	57900299	57900299	T	A	SNP	ZNF611	NM_030972	human	genbank	54_36p	-1	provisional	silent	c.1821	p.S607	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_Multiheme cytochromes"	-	no_errors
ZNF468	90333	broad.mit.edu	36	19	58036158	58036158	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58036158	58036158	G	C	SNP	ZNF468	NM_001008801	human	genbank	54_36p	-1	validated	missense	c.1201	p.H401D	0.52	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZNF321	399669	broad.mit.edu	36	19	58124377	58124377	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58124377	58124377	A	T	SNP	ZNF321	NM_203307	human	genbank	54_36p	-1	validated	missense	c.86	p.I29N	0	NULL	NULL	-	no_errors
ZNF415	55786	broad.mit.edu	36	19	58303482	58303494	+	Frame_Shift_Del	DEL	TGATGTCTGAAGA	-	TGATGTCTGAAGA	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	TGATGTCTGAAGA	TGATGTCTGAAGA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	58303482	58303494	TGATGTCTGAAGA	-	DEL	ZNF415	NM_018355	human	genbank	54_36p	-1	validated	frame_shift_del	c.1628_1616	p.L539fs	0.006:0.007:0.008:0.006:0.005:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.007	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[58303442,58304973])"	no_errors
ZNF415	55786	broad.mit.edu	36	19	58311415	58311415	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58311415	58311415	A	C	SNP	ZNF415	NM_018355	human	genbank	54_36p	-1	validated	missense	c.99	p.D33E	0.98	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF665	79788	broad.mit.edu	36	19	58360782	58360782	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	58360782	58360782	C	A	SNP	ZNF665	NM_024733	human	genbank	54_36p	-1	provisional	missense	c.773	p.G258V	0.99	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF665	79788	broad.mit.edu	36	19	58361183	58361183	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58361183	58361183	T	A	SNP	ZNF665	NM_024733	human	genbank	54_36p	-1	provisional	missense	c.372	p.R124S	0	NULL	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF765	91661	broad.mit.edu	36	19	58604051	58604051	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58604051	58604051	G	T	SNP	ZNF765	NM_001040185	human	genbank	54_36p	1	provisional	silent	c.1431	p.R477	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF765	91661	broad.mit.edu	36	19	58604142	58604142	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58604142	58604142	A	T	SNP	ZNF765	NM_001040185	human	genbank	54_36p	1	provisional	missense	c.1522	p.N508Y	0	"HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF761	388561	broad.mit.edu	36	19	58650172	58650172	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58650172	58650172	C	A	SNP	ZNF761	NM_001008401	human	genbank	54_36p	1	validated	nonsense	c.437	p.S146*	0	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Multiheme cytochromes"	-	no_errors
ZNF331	55422	broad.mit.edu	36	19	58772204	58772204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	58772204	58772204	G	A	SNP	ZNF331	NM_001079906	human	genbank	54_36p	1	validated	missense	c.578	p.G193E	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NLRP12	91662	broad.mit.edu	36	19	58993342	58993342	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	58993342	58993342	A	T	SNP	NLRP12	NM_144687	human	genbank	54_36p	-1	reviewed	missense	c.2894	p.L965Q	0.54	"superfamily_RNI-like,HMMSmart_SM00368"	"HMMPfam_PAAD_DAPIN,superfamily_DEATH domain,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP12	91662	broad.mit.edu	36	19	59004776	59004776	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59004776	59004776	G	C	SNP	NLRP12	NM_144687	human	genbank	54_36p	-1	reviewed	missense	c.1949	p.S650C	0.01	superfamily_RNI-like	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like"	-	no_errors
MYADM	91663	broad.mit.edu	36	19	59069085	59069085	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	59069085	59069085	G	A	SNP	MYADM	NM_001020818	human	genbank	54_36p	1	validated	missense	c.490	p.E164K	1	NULL	HMMPfam_MARVEL	-	no_errors
PRKCG	5582	broad.mit.edu	36	19	59086787	59086787	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59086787	59086787	G	A	SNP	PRKCG	NM_002739	human	genbank	54_36p	1	reviewed	missense	c.577	p.D193N	1	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
CACNG7	59284	broad.mit.edu	36	19	59137263	59137263	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	59137263	59137263	C	T	SNP	CACNG7	NM_031896	human	genbank	54_36p	1	reviewed	silent	c.732	p.S244	0.82	NULL	HMMPfam_PMP22_Claudin	-	no_errors
CACNG6	59285	broad.mit.edu	36	19	59193315	59193315	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	59193315	59193315	C	A	SNP	CACNG6	NM_145814	human	genbank	54_36p	1	reviewed	nonsense	c.342	p.C114*	1	NULL	NULL	-	no_errors
CACNG6	59285	broad.mit.edu	36	19	59207216	59207216	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59207216	59207216	G	A	SNP	CACNG6	NM_145814	human	genbank	54_36p	1	reviewed	nonsense	c.744	p.W248*	0.34	NULL	NULL	-	no_errors
CNOT3	4849	broad.mit.edu	36	19	59343873	59343873	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59343873	59343873	G	T	SNP	CNOT3	NM_014516	human	genbank	54_36p	1	validated	missense	c.1073	p.S358I	0.95	NULL	"HMMPfam_Not3,HMMPfam_NOT2_3_5"	-	no_errors
CNOT3	4849	broad.mit.edu	36	19	59349278	59349278	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59349278	59349278	G	C	SNP	CNOT3	NM_014516	human	genbank	54_36p	1	validated	missense	c.2052	p.Q684H	1	HMMPfam_NOT2_3_5	"HMMPfam_Not3,HMMPfam_NOT2_3_5"	-	no_errors
RPS9	6203	broad.mit.edu	36	19	59403184	59403184	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59403184	59403184	C	A	SNP	RPS9	NM_001013	human	genbank	54_36p	1	reviewed	missense	c.514	p.R172S	1	HMMSmart_SM00363	"HMMPfam_Ribosomal_S4,superfamily_Alpha-L RNA-binding motif,PatternScan_RIBOSOMAL_S4,HMMPfam_S4,HMMSmart_SM00363"	-	no_errors
LILRB3	11025	broad.mit.edu	36	19	59416352	59416352	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59416352	59416352	G	A	SNP	LILRB3	NM_001081450	human	genbank	54_36p	-1	reviewed	silent	c.1116	p.Y372	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
LILRA6	79168	broad.mit.edu	36	19	59436085	59436085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59436085	59436085	C	A	SNP	LILRA6	NM_024318	human	genbank	54_36p	-1	validated	missense	c.1135	p.A379S	0	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	"superfamily_SSF48726,HMMPfam_ig,HMMSmart_IG"	-	no_errors
LILRA6	79168	broad.mit.edu	36	19	59436170	59436170	+	Nonsense_Mutation	SNP	A	A	C	rs1052992	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59436170	59436170	A	C	SNP	LILRA6	NM_024318	human	genbank	54_36p	-1	validated	nonsense	c.1050	p.Y350*	0	"HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
LILRA6	79168	broad.mit.edu	36	19	59436745	59436745	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59436745	59436745	G	T	SNP	LILRA6	NM_024318	human	genbank	54_36p	-1	validated	silent	c.729	p.L243	0.03	"HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726"	"HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726"	-	no_errors
LILRB5	10990	broad.mit.edu	36	19	59448664	59448664	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59448664	59448664	T	C	SNP	LILRB5	NM_001081442	human	genbank	54_36p	-1	reviewed	splice_site	c.1358-2	e9-2	0	-	-	-	no_errors
LILRA3	11026	broad.mit.edu	36	19	59495393	59495393	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59495393	59495393	G	T	SNP	LILRA3	NM_006865	human	genbank	54_36p	-1	provisional	silent	c.243	p.G81	0	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
LILRA5	353514	broad.mit.edu	36	19	59514739	59514739	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59514739	59514739	T	C	SNP	LILRA5	NM_021250	human	genbank	54_36p	-1	reviewed	missense	c.469	p.N157D	0.05	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
LILRA1	11024	broad.mit.edu	36	19	59798208	59798208	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59798208	59798208	C	T	SNP	LILRA1	NM_006863	human	genbank	54_36p	1	provisional	missense	c.337	p.P113S	0.96	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
LILRB1	10859	broad.mit.edu	36	19	59836413	59836413	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	59836413	59836413	G	A	SNP	LILRB1	NM_001081637	human	genbank	54_36p	1	reviewed	missense	c.1093	p.D365N	0	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
KIR3DL3	115653	broad.mit.edu	36	19	59938560	59938560	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	59938560	59938560	T	G	SNP	KIR3DL3	NM_153443	human	genbank	54_36p	1	reviewed	missense	c.978	p.I326M	0.02	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
KIR3DL1	3811	broad.mit.edu	36	19	60023210	60023210	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60023210	60023210	T	G	SNP	KIR3DL1	NM_013289	human	genbank	54_36p	1	reviewed	missense	c.586	p.Y196D	0.03	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig"	-	no_errors
KIR3DL2	3812	broad.mit.edu	36	19	60069681	60069681	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60069681	60069681	A	G	SNP	KIR3DL2	NM_006737	human	genbank	54_36p	1	reviewed	missense	c.1150	p.N384D	0.12	NULL	"superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig"	-	no_errors
FCAR	2204	broad.mit.edu	36	19	60092891	60092891	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60092891	60092891	C	T	SNP	FCAR	NM_133274	human	genbank	54_36p	1	reviewed	missense	c.604	p.R202C	0.01	NULL	"superfamily_SSF48726,HMMSmart_IG"	-	no_errors
NCR1	9437	broad.mit.edu	36	19	60112559	60112559	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	60112559	60112559	G	A	SNP	NCR1	NM_004829	human	genbank	54_36p	1	validated	missense	c.499	p.G167R	0	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409"	-	no_errors
NLRP2	55655	broad.mit.edu	36	19	60204038	60204038	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60204038	60204038	C	A	SNP	NLRP2	NM_017852	human	genbank	54_36p	1	provisional	missense	c.3149	p.P1050H	0	superfamily_RNI-like	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
GP6	51206	broad.mit.edu	36	19	60217703	60217703	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60217703	60217703	C	T	SNP	GP6	NM_001083899	human	genbank	54_36p	-1	validated	silent	c.1422	p.V474	0	NULL	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
RDH13	112724	broad.mit.edu	36	19	60248389	60248389	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	60248389	60248389	G	C	SNP	RDH13	NM_138412	human	genbank	54_36p	-1	reviewed	nonsense	c.648	p.Y216*	1	superfamily_NAD(P)-binding Rossmann-fold domains	"superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_ADH_SHORT"	-	no_errors
EPS8L1	54869	broad.mit.edu	36	19	60289342	60289342	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	60289342	60289342	G	A	SNP	EPS8L1	NM_133180	human	genbank	54_36p	1	reviewed	silent	c.1620	p.L540	0	superfamily_SH3-domain	"HMMSmart_SM00462,HMMPfam_PTB,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1"	-	no_errors
TNNT1	7138	broad.mit.edu	36	19	60340308	60340308	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60340308	60340308	C	G	SNP	TNNT1	NM_003283	human	genbank	54_36p	-1	reviewed	missense	c.586	p.D196H	1	HMMPfam_Troponin	HMMPfam_Troponin	-	no_errors
C19orf51	352909	broad.mit.edu	36	19	60369533	60369533	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	60369533	60369533	G	A	SNP	C19orf51	NM_178837	human	genbank	54_36p	-1	validated	missense	c.202	p.P68S	1	NULL	NULL	-	no_errors
PTPRH	5794	broad.mit.edu	36	19	60401866	60401866	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60401866	60401866	C	T	SNP	PTPRH	NM_002842	human	genbank	54_36p	-1	reviewed	silent	c.1647	p.R549	0.01	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	"HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
PTPRH	5794	broad.mit.edu	36	19	60403629	60403629	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	60403629	60403629	C	A	SNP	PTPRH	NM_002842	human	genbank	54_36p	-1	reviewed	missense	c.1207	p.A403S	0.89	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
PPP6R1	22870	broad.mit.edu	36	19	60439917	60439917	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	60439917	60439917	C	A	SNP	SAPS1	NM_014931	human	genbank	54_36p	-1	validated	missense	c.1894	p.A632S	1	NULL	HMMPfam_SAPS	-	no_errors
PPP6R1	22870	broad.mit.edu	36	19	60439947	60439947	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	60439947	60439947	C	T	SNP	SAPS1	NM_014931	human	genbank	54_36p	-1	validated	missense	c.1864	p.D622N	1	NULL	HMMPfam_SAPS	-	no_errors
BRSK1	84446	broad.mit.edu	36	19	60505999	60505999	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	60505999	60505999	G	A	SNP	BRSK1	NM_032430	human	genbank	54_36p	1	validated	missense	c.980	p.G327D	1	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
BRSK1	84446	broad.mit.edu	36	19	60506867	60506867	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	60506867	60506867	G	T	SNP	BRSK1	NM_032430	human	genbank	54_36p	1	validated	missense	c.1147	p.D383Y	1	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
ISOC2	79763	broad.mit.edu	36	19	60658221	60658221	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60658221	60658221	C	T	SNP	ISOC2	NM_024710	human	genbank	54_36p	-1	validated	missense	c.532	p.E178K	1	"superfamily_Iscrsm_hydrolase,HMMPfam_Isochorismatase"	"superfamily_Iscrsm_hydrolase,HMMPfam_Isochorismatase"	-	no_errors
ZNF628	89887	broad.mit.edu	36	19	60684641	60684641	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	60684641	60684641	G	T	SNP	ZNF628	NM_033113	human	genbank	54_36p	1	validated	missense	c.257	p.R86L	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF581	51545	broad.mit.edu	36	19	60847886	60847886	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	60847886	60847886	C	A	SNP	ZNF581	NM_016535	human	genbank	54_36p	1	validated	missense	c.137	p.S46Y	0	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
NLRP11	204801	broad.mit.edu	36	19	60995521	60995521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60995521	60995521	G	A	SNP	NLRP11	NM_145007	human	genbank	54_36p	-1	validated	missense	c.2471	p.T824M	0	superfamily_RNI-like	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,PatternScan_CU2_MONOOXYGENASE_1,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP11	204801	broad.mit.edu	36	19	60999347	60999347	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60999347	60999347	C	G	SNP	NLRP11	NM_145007	human	genbank	54_36p	-1	validated	silent	c.2253	p.L751	0	"HMMSmart_SM00368,superfamily_RNI-like"	"PatternScan_CU2_MONOOXYGENASE_1,HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like"	-	no_errors
NLRP11	204801	broad.mit.edu	36	19	60999429	60999429	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	60999429	60999429	C	A	SNP	NLRP11	NM_145007	human	genbank	54_36p	-1	validated	splice_site	c.2172-1	e5-1	0.01	-	-	-	no_errors
NLRP4	147945	broad.mit.edu	36	19	61061830	61061830	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	61061830	61061830	G	A	SNP	NLRP4	NM_134444	human	genbank	54_36p	1	validated	missense	c.1259	p.R420Q	0.05	NULL	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP4	147945	broad.mit.edu	36	19	61062166	61062166	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	61062166	61062166	A	G	SNP	NLRP4	NM_134444	human	genbank	54_36p	1	validated	missense	c.1595	p.H532R	0.07	NULL	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRP4	147945	broad.mit.edu	36	19	61062396	61062396	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	61062396	61062396	G	T	SNP	NLRP4	NM_134444	human	genbank	54_36p	1	validated	missense	c.1825	p.V609F	0.01	superfamily_RNI-like	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRP4	147945	broad.mit.edu	36	19	61065273	61065273	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	61065273	61065273	C	T	SNP	NLRP4	NM_134444	human	genbank	54_36p	1	validated	missense	c.2122	p.R708C	0	superfamily_RNI-like	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRP13	126204	broad.mit.edu	36	19	61128189	61128189	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	61128189	61128189	T	G	SNP	NLRP13	NM_176810	human	genbank	54_36p	-1	validated	missense	c.344	p.Q115P	0.03	NULL	"superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMPfam_LRR_1"	-	no_errors
NLRP8	126205	broad.mit.edu	36	19	61155718	61155718	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	61155718	61155718	A	C	SNP	NLRP8	NM_176811	human	genbank	54_36p	1	provisional	missense	c.370	p.I124L	0.02	superfamily_DEATH domain	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP5	126206	broad.mit.edu	36	19	61230253	61230253	+	Missense_Mutation	SNP	C	C	T	rs45627733	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	61230253	61230253	C	T	SNP	NLRP5	NM_153447	human	genbank	54_36p	1	reviewed	missense	c.785	p.T262M	0.02	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT"	"superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368"	-	no_errors
NLRP5	126206	broad.mit.edu	36	19	61230630	61230630	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	61230630	61230630	G	A	SNP	NLRP5	NM_153447	human	genbank	54_36p	1	reviewed	missense	c.1162	p.V388I	0	"HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NLRP5	126206	broad.mit.edu	36	19	61261588	61261588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	61261588	61261588	G	T	SNP	NLRP5	NM_153447	human	genbank	54_36p	1	reviewed	missense	c.3413	p.G1138V	0.16	superfamily_RNI-like	"HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ZSCAN5A	79149	broad.mit.edu	36	19	61425812	61425812	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	61425812	61425812	T	A	SNP	ZSCAN5A	NM_024303	human	genbank	54_36p	-1	provisional	silent	c.699	p.P233	0	NULL	"HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF582	147948	broad.mit.edu	36	19	61587438	61587438	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	61587438	61587438	C	A	SNP	ZNF582	NM_144690	human	genbank	54_36p	-1	provisional	missense	c.1160	p.R387I	0.7	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF583	147949	broad.mit.edu	36	19	61626618	61626618	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	61626618	61626618	G	A	SNP	ZNF583	NM_152478	human	genbank	54_36p	1	provisional	missense	c.779	p.R260K	0.01	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF471	57573	broad.mit.edu	36	19	61728868	61728868	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	61728868	61728868	G	A	SNP	ZNF471	NM_020813	human	genbank	54_36p	1	validated	silent	c.1620	p.E540	1	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZFP28	140612	broad.mit.edu	36	19	61751016	61751016	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	61751016	61751016	C	G	SNP	ZFP28	NM_020828	human	genbank	54_36p	1	provisional	missense	c.456	p.I152M	0.94	"superfamily_Krueppel-associated_box,HMMSmart_KRAB"	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PEG3	5178	broad.mit.edu	36	19	62017826	62017826	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62017826	62017826	C	A	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.3796	p.G1266C	0	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
PEG3	5178	broad.mit.edu	36	19	62020629	62020629	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	19	62020629	62020629	T	C	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	silent	c.993	p.A331	0.01	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
PEG3	5178	broad.mit.edu	36	19	62024923	62024923	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	62024923	62024923	G	A	SNP	PEG3	NM_006210	human	genbank	54_36p	-1	provisional	missense	c.577	p.R193W	0.06	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
USP29	57663	broad.mit.edu	36	19	62332686	62332686	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62332686	62332686	C	A	SNP	USP29	NM_020903	human	genbank	54_36p	1	validated	missense	c.831	p.D277E	0	NULL	"superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP29	57663	broad.mit.edu	36	19	62334010	62334010	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62334010	62334010	A	T	SNP	USP29	NM_020903	human	genbank	54_36p	1	validated	nonsense	c.2155	p.K719*	0	"HMMPfam_UCH,superfamily_SSF54001"	"HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001"	-	no_errors
DUXA	503835	broad.mit.edu	36	19	62362451	62362451	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62362451	62362451	A	C	SNP	DUXA	NM_001012729	human	genbank	54_36p	-1	validated	missense	c.188	p.F63C	1	"HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like"	"HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1"	-	no_errors
ZNF264	9422	broad.mit.edu	36	19	62416080	62416096	+	Frame_Shift_Del	DEL	AAATATTTTGCCAGAGG	-	AAATATTTTGCCAGAGG	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	AAATATTTTGCCAGAGG	AAATATTTTGCCAGAGG	-	-	AAATATTTTGCCAGAGG	AAATATTTTGCCAGAGG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	19	62416080	62416096	AAATATTTTGCCAGAGG	-	DEL	ZNF264	NM_003417	human	genbank	54_36p	1	validated	frame_shift_del	c.1803_1819	p.L604fs	0.003:0.004:0.001:0.000:0.000:0.003:0.006:0.005:0.001:0.001:0.004:0.011:0.006:0.001:0.001:0.000:0.000	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"(deletion:cds_exon[62414534,62416161])"	no_errors
ZNF547	284306	broad.mit.edu	36	19	62580982	62580982	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62580982	62580982	T	G	SNP	ZNF547	NM_173631	human	genbank	54_36p	1	validated	missense	c.826	p.F276V	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2"	-	no_errors
ZNF548	100129081	broad.mit.edu	36	19	62602772	62602772	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62602772	62602772	C	T	SNP	LOC100129081	XM_001718521	human	genbank	54_36p	-1	model	missense	c.178	p.V60I	0	NULL	NULL	-	no_errors
ZNF749	388567	broad.mit.edu	36	19	62647610	62647610	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62647610	62647610	C	G	SNP	ZNF749	NM_001023561	human	genbank	54_36p	1	provisional	missense	c.1282	p.H428D	0.39	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2"	-	no_errors
ZNF773	374928	broad.mit.edu	36	19	62707958	62707958	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	19	62707958	62707958	C	A	SNP	ZNF773	NM_198542	human	genbank	54_36p	1	provisional	missense	c.155	p.A52D	0.73	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF549	256051	broad.mit.edu	36	19	62738325	62738325	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	62738325	62738325	G	T	SNP	ZNF549	NM_153263	human	genbank	54_36p	1	provisional	missense	c.35	p.G12V	0.79	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZSCAN4	201516	broad.mit.edu	36	19	62881095	62881095	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62881095	62881095	T	G	SNP	ZSCAN4	NM_152677	human	genbank	54_36p	1	validated	missense	c.398	p.V133G	0.91	HMMPfam_SCAN	"HMMPfam_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF551	90233	broad.mit.edu	36	19	62891400	62891400	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62891400	62891400	G	T	SNP	ZNF551	NM_138347	human	genbank	54_36p	1	validated	missense	c.1897	p.G633W	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF671	79891	broad.mit.edu	36	19	62924791	62924791	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62924791	62924791	C	A	SNP	ZNF671	NM_024833	human	genbank	54_36p	-1	validated	missense	c.475	p.A159S	0.06	NULL	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF776	284309	broad.mit.edu	36	19	62957005	62957005	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	62957005	62957005	G	C	SNP	ZNF776	NM_173632	human	genbank	54_36p	1	validated	missense	c.569	p.R190T	0.2	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF586	54807	broad.mit.edu	36	19	62982007	62982007	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	62982007	62982007	A	G	SNP	ZNF586	ENST00000396150	human	ensembl	54_36p	1	known	missense	c.113	p.E38G	0.8	NULL	NULL	-	no_errors
ZNF586	54807	broad.mit.edu	36	19	62982966	62982966	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	19	62982966	62982966	C	T	SNP	ZNF586	NM_017652	human	genbank	54_36p	1	validated	missense	c.1199	p.P400L	0.05	superfamily_SSF57667	"HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZNF552	79818	broad.mit.edu	36	19	63011287	63011287	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	63011287	63011287	T	C	SNP	ZNF552	NM_024762	human	genbank	54_36p	-1	validated	missense	c.1157	p.E386G	0.95	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZSCAN1	284312	broad.mit.edu	36	19	63255711	63255711	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	63255711	63255711	A	T	SNP	ZSCAN1	NM_182572	human	genbank	54_36p	1	validated	silent	c.507	p.A169	0.59	NULL	"HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF135	7694	broad.mit.edu	36	19	63271204	63271204	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	63271204	63271204	C	T	SNP	ZNF135	NM_003436	human	genbank	54_36p	1	provisional	nonsense	c.1540	p.R514*	0.84	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF274	10782	broad.mit.edu	36	19	63416303	63416303	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	19	63416303	63416303	G	A	SNP	ZNF274	NM_133502	human	genbank	54_36p	1	reviewed	missense	c.1943	p.R648K	0.98	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMPfam_SCAN"	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF132	7691	broad.mit.edu	36	19	63636598	63636598	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	19	63636598	63636598	T	G	SNP	ZNF132	NM_003433	human	genbank	54_36p	-1	validated	missense	c.2025	p.K675N	0.72	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF324B	388569	broad.mit.edu	36	19	63657489	63657489	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	63657489	63657489	C	T	SNP	ZNF324B	NM_207395	human	genbank	54_36p	1	validated	silent	c.204	p.T68	0	NULL	"HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF324B	388569	broad.mit.edu	36	19	63658941	63658942	+	Missense_Mutation	DNP	TC	TC	GT	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	63658941	63658942	TC	GT	DNP	ZNF324B	NM_207395	human	genbank	54_36p	1	validated	missense	c.818_819	p.L273R	0.000:0.001	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
SLC27A5	10998	broad.mit.edu	36	19	63701781	63701781	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	19	63701781	63701781	C	A	SNP	SLC27A5	NM_012254	human	genbank	54_36p	-1	reviewed	silent	c.1986	p.L662	0.93	NULL	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
DEFB129	140881	broad.mit.edu	36	20	158247	158247	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	158247	158247	C	A	SNP	DEFB129	NM_080831	human	genbank	54_36p	1	validated	silent	c.387	p.T129	0	NULL	NULL	-	no_errors
TRIB3	57761	broad.mit.edu	36	20	316679	316679	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	316679	316679	C	G	SNP	TRIB3	NM_021158	human	genbank	54_36p	1	reviewed	missense	c.25	p.P9A	0	NULL	"superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
TRIB3	57761	broad.mit.edu	36	20	319976	319976	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	319976	319976	C	G	SNP	TRIB3	NM_021158	human	genbank	54_36p	1	reviewed	missense	c.337	p.R113G	0	superfamily_Kinase_like	"superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
SRXN1	140809	broad.mit.edu	36	20	581635	581635	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	581635	581635	G	C	SNP	SRXN1	NM_080725	human	genbank	54_36p	-1	provisional	silent	c.195	p.L65	0.95	HMMSmart_SM00470	HMMSmart_SM00470	-	no_errors
SCRT2	85508	broad.mit.edu	36	20	592519	592519	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	592519	592519	G	T	SNP	SCRT2	NM_033129	human	genbank	54_36p	-1	validated	missense	c.720	p.F240L	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2"	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
SNPH	9751	broad.mit.edu	36	20	1233730	1233730	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	1233730	1233730	C	T	SNP	SNPH	NM_014723	human	genbank	54_36p	1	reviewed	nonsense	c.517	p.Q173*	1	NULL	NULL	-	no_errors
SNPH	9751	broad.mit.edu	36	20	1234337	1234337	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	1234337	1234337	C	G	SNP	SNPH	NM_014723	human	genbank	54_36p	1	reviewed	missense	c.1124	p.A375G	0	NULL	NULL	-	no_errors
SIRPG	55423	broad.mit.edu	36	20	1565038	1565038	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	1565038	1565038	A	G	SNP	SIRPG	NM_018556	human	genbank	54_36p	-1	reviewed	missense	c.544	p.W182R	0.94	"superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407"	-	no_errors
SIRPA	140885	broad.mit.edu	36	20	1851108	1851108	+	Missense_Mutation	SNP	G	G	A	rs2422666	"by-cluster,by-frequency,by-hapmap"	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	1851108	1851108	G	A	SNP	SIRPA	NM_001040022	human	genbank	54_36p	1	reviewed	missense	c.904	p.V302I	0	"superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1"	"HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_C1-set,HMMSmart_IGc1"	-	no_errors
TGM3	7053	broad.mit.edu	36	20	2268586	2268605	+	Frame_Shift_Del	DEL	GCTGATGGTGGAGGGAAGCG	-	GCTGATGGTGGAGGGAAGCG	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	GCTGATGGTGGAGGGAAGCG	GCTGATGGTGGAGGGAAGCG	-	-	GCTGATGGTGGAGGGAAGCG	GCTGATGGTGGAGGGAAGCG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	20	2268586	2268605	GCTGATGGTGGAGGGAAGCG	-	DEL	TGM3	NM_003245	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1887_1906	p.L630fs	0.999:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.995:0.941:0.993:0.999:1.000:1.000	"HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains"	"HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C"	"(deletion:cds_exon[2268500,2268633])"	no_errors
TGM6	343641	broad.mit.edu	36	20	2346128	2346128	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	2346128	2346128	C	G	SNP	TGM6	NM_198994	human	genbank	54_36p	1	validated	silent	c.1587	p.V529	0.92	"superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C"	"HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C"	-	no_errors
TMC2	117532	broad.mit.edu	36	20	2553002	2553002	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	2553002	2553002	G	A	SNP	TMC2	NM_080751	human	genbank	54_36p	1	validated	missense	c.2266	p.A756T	0.96	NULL	HMMPfam_TMC	-	no_errors
NOP56	10528	broad.mit.edu	36	20	2584044	2584044	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	2584044	2584044	C	T	SNP	NOP56	NM_006392	human	genbank	54_36p	1	reviewed	nonsense	c.643	p.Q215*	1	"HMMPfam_NOSIC,superfamily_SSF89124"	"HMMPfam_NOP5NT,HMMPfam_NOSIC,superfamily_SSF89124,HMMPfam_Nop"	-	no_errors
NOP56	10528	broad.mit.edu	36	20	2584148	2584148	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	2584148	2584148	G	A	SNP	NOP56	NM_006392	human	genbank	54_36p	1	reviewed	silent	c.747	p.R249	1	superfamily_SSF89124	"HMMPfam_Nop,HMMPfam_NOP5NT,HMMPfam_NOSIC,superfamily_SSF89124"	-	no_errors
CPXM1	56265	broad.mit.edu	36	20	2726886	2726886	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	2726886	2726886	G	A	SNP	CPXM1	NM_019609	human	genbank	54_36p	-1	reviewed	nonsense	c.502	p.Q168*	0.15	"HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C"	###############################################################################################################################################################################################################################################################	-	no_errors
FAM113A	64773	broad.mit.edu	36	20	2767340	2767340	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	2767340	2767340	C	T	SNP	FAM113A	NM_022760	human	genbank	54_36p	-1	predicted	missense	c.496	p.V166M	0.9	superfamily_SGNH hydrolase	superfamily_SGNH hydrolase	-	no_errors
VPS16	64601	broad.mit.edu	36	20	2794086	2794086	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	2794086	2794086	A	G	SNP	VPS16	NM_022575	human	genbank	54_36p	1	reviewed	missense	c.2216	p.D739G	1	HMMPfam_Vps16_C	"HMMPfam_Vps16_N,HMMPfam_Vps16_C"	-	no_errors
UBOX5	22888	broad.mit.edu	36	20	3038781	3038781	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	3038781	3038781	T	C	SNP	UBOX5	NM_014948	human	genbank	54_36p	-1	validated	missense	c.1597	p.S533G	1	superfamily_RING/U-box	"superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504,PatternScan_ZF_RING_1"	-	no_errors
UBOX5	22888	broad.mit.edu	36	20	3050634	3050634	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	3050634	3050634	C	T	SNP	UBOX5	NM_014948	human	genbank	54_36p	-1	validated	silent	c.651	p.L217	0.11	NULL	"HMMPfam_U-box,HMMSmart_SM00504,PatternScan_ZF_RING_1,superfamily_RING/U-box"	-	no_errors
SLC4A11	83959	broad.mit.edu	36	20	3158863	3158863	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	3158863	3158863	C	G	SNP	SLC4A11	NM_032034	human	genbank	54_36p	-1	validated	missense	c.1507	p.V503L	1	HMMPfam_HCO3_cotransp	"superfamily_Phoshotransferase/anion transport protein,HMMPfam_HCO3_cotransp"	-	no_errors
SLC4A11	83959	broad.mit.edu	36	20	3163474	3163474	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	3163474	3163474	A	T	SNP	SLC4A11	NM_032034	human	genbank	54_36p	-1	validated	missense	c.203	p.F68Y	1	NULL	"HMMPfam_HCO3_cotransp,superfamily_Phoshotransferase/anion transport protein"	-	no_errors
ATRN	8455	broad.mit.edu	36	20	3526566	3526566	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	3526566	3526566	T	A	SNP	ATRN	NM_139321	human	genbank	54_36p	1	reviewed	silent	c.3483	p.I1161	0.99	superfamily_EGF/Laminin	###############################################################################################################################################################################################################################################################	-	no_errors
SIGLEC1	6614	broad.mit.edu	36	20	3620593	3620593	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	20	3620593	3620593	G	A	SNP	SIGLEC1	NM_023068	human	genbank	54_36p	-1	reviewed	silent	c.4287	p.N1429	0	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408"	"HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set"	-	no_errors
SIGLEC1	6614	broad.mit.edu	36	20	3622093	3622093	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	3622093	3622093	C	A	SNP	SIGLEC1	NM_023068	human	genbank	54_36p	-1	reviewed	splice_site	c.3508+1	e13+1	1	-	-	-	no_errors
SIGLEC1	6614	broad.mit.edu	36	20	3622892	3622892	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	20	3622892	3622892	C	T	SNP	SIGLEC1	NM_023068	human	genbank	54_36p	-1	reviewed	missense	c.3232	p.A1078T	0.01	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin"	-	no_errors
HSPA12B	116835	broad.mit.edu	36	20	3673632	3673632	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	3673632	3673632	G	T	SNP	HSPA12B	NM_052970	human	genbank	54_36p	1	reviewed	missense	c.350	p.S117I	1	superfamily_SSF53067	"PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF53067"	-	no_errors
CDC25B	994	broad.mit.edu	36	20	3729936	3729936	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	3729936	3729936	G	T	SNP	CDC25B	NM_021873	human	genbank	54_36p	1	reviewed	missense	c.741	p.E247D	0.38	HMMPfam_M-inducer_phosp	"HMMPfam_M-inducer_phosp,superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00450,HMMPfam_Rhodanese"	-	no_errors
PROKR2	128674	broad.mit.edu	36	20	5230783	5230783	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	5230783	5230783	C	T	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	missense	c.1058	p.R353H	0.98	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
PROKR2	128674	broad.mit.edu	36	20	5242722	5242722	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	5242722	5242722	G	A	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	silent	c.294	p.S98	0.8	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
PROKR2	128674	broad.mit.edu	36	20	5242763	5242763	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	5242763	5242763	G	A	SNP	PROKR2	NM_144773	human	genbank	54_36p	-1	reviewed	missense	c.253	p.R85C	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
RP5-1022P6.2	56261	broad.mit.edu	36	20	5476439	5476439	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	5476439	5476439	G	A	SNP	RP5-1022P6.2	NM_019593	human	genbank	54_36p	-1	validated	silent	c.1887	p.R629	1	NULL	"superfamily_CBD_4,HMMPfam_CBM_20,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD"	-	no_errors
CRLS1	54675	broad.mit.edu	36	20	5960658	5960658	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	5960658	5960658	C	G	SNP	CRLS1	NM_019095	human	genbank	54_36p	1	validated	missense	c.661	p.R221G	1	HMMPfam_CDP-OH_P_transf	"PatternScan_CDP_ALCOHOL_P_TRANSF,HMMPfam_CDP-OH_P_transf"	-	no_errors
LRRN4	164312	broad.mit.edu	36	20	5980815	5980816	+	Missense_Mutation	DNP	GA	GA	TC	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	5980815	5980816	GA	TC	DNP	LRRN4	NM_152611	human	genbank	54_36p	-1	validated	missense	c.631_630	p.DL210EI	0.997:0.986	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1"	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	-	no_errors
PLCB1	23236	broad.mit.edu	36	20	8653336	8653336	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	8653336	8653336	G	A	SNP	PLCB1	NM_015192	human	genbank	54_36p	1	reviewed	missense	c.1615	p.E539K	1	"superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y"	"superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C"	-	no_errors
PLCB1	23236	broad.mit.edu	36	20	8665739	8665739	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	8665739	8665739	G	C	SNP	PLCB1	NM_015192	human	genbank	54_36p	1	reviewed	missense	c.2108	p.G703A	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PLC-beta_C,HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand"	-	no_errors
PLCB1	23236	broad.mit.edu	36	20	8717132	8717132	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	20	8717132	8717132	C	A	SNP	PLCB1	NM_015192	human	genbank	54_36p	1	reviewed	missense	c.3148	p.Q1050K	1	HMMPfam_PLC-beta_C	"HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PLC-beta_C,HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand"	-	no_errors
PLCB4	5332	broad.mit.edu	36	20	9294157	9294157	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	9294157	9294157	A	C	SNP	PLCB4	NM_000933	human	genbank	54_36p	1	reviewed	silent	c.499	p.R167	1	superfamily_SSF47473	"superfamily_SSF50729,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1154"	-	no_errors
PLCB4	5332	broad.mit.edu	36	20	9388287	9388287	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	9388287	9388287	A	G	SNP	PLCB4	NM_000933	human	genbank	54_36p	1	reviewed	silent	c.3042	p.K1014	1	NULL	"HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMPfam_DUF1154,HMMPfam_efhand_like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF47473,superfamily_SSF50729"	-	no_errors
ANKRD5	63926	broad.mit.edu	36	20	9978770	9978770	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	9978770	9978770	T	A	SNP	ANKRD5	NM_022096	human	genbank	54_36p	1	validated	missense	c.1553	p.V518E	1	superfamily_Ankyrin repeat	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_EF-hand"	-	no_errors
JAG1	182	broad.mit.edu	36	20	10570147	10570147	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	10570147	10570147	C	T	SNP	JAG1	NM_000214	human	genbank	54_36p	-1	reviewed	silent	c.2877	p.A959	0.92	NULL	"HMMPfam_MNNL,HMMPfam_DSL,HMMSmart_DSL,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_VWC"	-	no_errors
ESF1	51575	broad.mit.edu	36	20	13704572	13704572	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	13704572	13704572	C	G	SNP	ESF1	NM_016649	human	genbank	54_36p	-1	provisional	missense	c.982	p.G328R	1	NULL	NULL	-	no_errors
SEL1L2	80343	broad.mit.edu	36	20	13815034	13815034	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	13815034	13815034	G	A	SNP	SEL1L2	NM_025229	human	genbank	54_36p	-1	validated	missense	c.800	p.T267M	1	NULL	"HMMSmart_SEL1,superfamily_SSF81901,HMMPfam_Sel1"	-	no_errors
KIF16B	55614	broad.mit.edu	36	20	16444271	16444271	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	16444271	16444271	T	A	SNP	KIF16B	NM_024704	human	genbank	54_36p	-1	validated	silent	c.270	p.A90	0.99	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin"	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_LECTIN_LEGUME_BETA,superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312"	-	no_errors
PCSK2	5126	broad.mit.edu	36	20	17382520	17382520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	17382520	17382520	C	T	SNP	PCSK2	NM_002594	human	genbank	54_36p	1	reviewed	missense	c.1019	p.T340I	1	"superfamily_Subtilisin-like,HMMPfam_Peptidase_S8"	"superfamily_Protease propeptides/inhibitors,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Galactose-binding domain-like,HMMPfam_P_proprotein"	-	no_errors
PCSK2	5126	broad.mit.edu	36	20	17382587	17382587	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	17382587	17382587	C	G	SNP	PCSK2	NM_002594	human	genbank	54_36p	1	reviewed	missense	c.1086	p.N362K	1	"HMMPfam_Peptidase_S8,superfamily_Subtilisin-like"	"HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,superfamily_Galactose-binding domain-like,superfamily_Protease propeptides/inhibitors"	-	no_errors
PCSK2	5126	broad.mit.edu	36	20	17394023	17394023	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	20	17394023	17394023	C	T	SNP	PCSK2	NM_002594	human	genbank	54_36p	1	reviewed	missense	c.1255	p.R419W	1	"HMMPfam_Peptidase_S8,superfamily_Subtilisin-like"	"HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,superfamily_Galactose-binding domain-like,superfamily_Protease propeptides/inhibitors"	-	no_errors
RRBP1	6238	broad.mit.edu	36	20	17589138	17589138	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	17589138	17589138	G	A	SNP	RRBP1	NM_001042576	human	genbank	54_36p	-1	reviewed	silent	c.15	p.D5	1	NULL	HMMPfam_Rib_recp_KP_reg	-	no_errors
CSRP2BP	57325	broad.mit.edu	36	20	18113251	18113251	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	18113251	18113251	G	C	SNP	CSRP2BP	NM_020536	human	genbank	54_36p	1	reviewed	missense	c.1990	p.D664H	1	superfamily_Acyl_CoA_acyltransferase	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1"	-	no_errors
ZNF133	7692	broad.mit.edu	36	20	18245068	18245068	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	20	18245068	18245068	C	A	SNP	ZNF133	NM_001083330	human	genbank	54_36p	1	validated	silent	c.1570	p.R524	0	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
C20orf12	55184	broad.mit.edu	36	20	18377628	18377628	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	18377628	18377628	T	C	SNP	C20orf12	NM_001099407	human	genbank	54_36p	-1	validated	missense	c.629	p.K210R	1	NULL	"HMMSmart_ZnF_RBZ,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ank"	-	no_errors
DTD1	92675	broad.mit.edu	36	20	18524815	18524815	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	18524815	18524815	G	A	SNP	DTD1	NM_080820	human	genbank	54_36p	1	reviewed	silent	c.300	p.E100	1	"superfamily_DTD-like (Pfam 02580),HMMPfam_Tyr_Deacylase"	"superfamily_DTD-like (Pfam 02580),HMMPfam_Tyr_Deacylase"	-	no_errors
RIN2	54453	broad.mit.edu	36	20	19818273	19818273	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	19818273	19818273	G	T	SNP	RIN2	NM_018993	human	genbank	54_36p	1	reviewed	missense	c.28	p.G10C	0.01	NULL	"superfamily_SH2 domain,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314"	-	no_errors
CRNKL1	51340	broad.mit.edu	36	20	19979249	19979249	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	19979249	19979249	C	T	SNP	CRNKL1	NM_016652	human	genbank	54_36p	-1	reviewed	silent	c.552	p.P184	0.47	NULL	"HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like"	-	no_errors
C20orf26	26074	broad.mit.edu	36	20	20180314	20180314	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	20	20180314	20180314	C	T	SNP	C20orf26	NM_015585	human	genbank	54_36p	1	predicted	silent	c.2235	p.T745	0.1	superfamily_FAD/NAD(P)-binding domain	"superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain"	-	no_errors
C20orf26	26074	broad.mit.edu	36	20	20191721	20191721	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	20	20191721	20191721	A	T	SNP	C20orf26	NM_015585	human	genbank	54_36p	1	predicted	missense	c.2450	p.E817V	0.84	superfamily_FAD/NAD(P)-binding domain	"superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain"	-	no_errors
INSM1	3642	broad.mit.edu	36	20	20298306	20298306	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	20298306	20298306	C	G	SNP	INSM1	NM_002196	human	genbank	54_36p	1	reviewed	silent	c.1395	p.A465	1	NULL	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
FOXA2	3170	broad.mit.edu	36	20	22511750	22511750	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	22511750	22511750	T	G	SNP	FOXA2	NM_021784	human	genbank	54_36p	-1	reviewed	missense	c.112	p.N38H	1	HMMPfam_Fork_head_N	"HMMPfam_Fork_head_N,HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C"	-	no_errors
THBD	7056	broad.mit.edu	36	20	22976780	22976780	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	22976780	22976780	C	T	SNP	THBD	NM_000361	human	genbank	54_36p	-1	reviewed	silent	c.1362	p.V454	0.03	"PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181"	"HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,HMMPfam_Tme5_EGF_like"	-	no_errors
CST3	1471	broad.mit.edu	36	20	23563890	23563890	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	23563890	23563890	C	A	SNP	CST3	NM_000099	human	genbank	54_36p	-1	reviewed	splice_site	c.357+1	e2+1	1	-	-	-	no_errors
CST1	1469	broad.mit.edu	36	20	23679339	23679339	+	Silent	SNP	A	A	G	rs3188296	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	ManualReview;Capture			Illumina GAIIx	20	23679339	23679339	A	G	SNP	CST1	NM_001898	human	genbank	54_36p	-1	reviewed	silent	c.165	p.Y55	0	"HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin"	"HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin,PatternScan_CYSTATIN"	-	no_errors
GGTLC1	92086	broad.mit.edu	36	20	23914531	23914531	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	23914531	23914531	C	T	SNP	GGTLC1	NM_178311	human	genbank	54_36p	-1	reviewed	missense	c.385	p.G129R	1	HMMPfam_G_glu_transpept	"HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE"	-	no_errors
CST7	8530	broad.mit.edu	36	20	24885932	24885932	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	24885932	24885932	C	A	SNP	CST7	NM_003650	human	genbank	54_36p	1	reviewed	missense	c.146	p.S49Y	0	NULL	"HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin"	-	no_errors
C20orf3	57136	broad.mit.edu	36	20	24897674	24897674	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	24897674	24897674	C	T	SNP	C20orf3	NM_020531	human	genbank	54_36p	-1	validated	missense	c.895	p.E299K	1	superfamily_Calcium-dependent phosphotriesterase	"superfamily_Calcium-dependent phosphotriesterase,HMMPfam_Str_synth"	-	no_errors
ACSS1	84532	broad.mit.edu	36	20	24959592	24959592	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	24959592	24959592	T	A	SNP	ACSS1	NM_032501	human	genbank	54_36p	-1	reviewed	missense	c.434	p.E145V	1	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	"superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING"	-	no_errors
NINL	22981	broad.mit.edu	36	20	25446416	25446416	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	25446416	25446416	C	T	SNP	NLP	NM_025176	human	genbank	54_36p	-1	validated	missense	c.250	p.D84N	0.98	superfamily_SSF47473	"superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1"	-	no_errors
DEFB118	117285	broad.mit.edu	36	20	29424534	29424534	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	29424534	29424534	C	A	SNP	DEFB118	NM_054112	human	genbank	54_36p	1	provisional	missense	c.272	p.T91K	0	NULL	NULL	-	no_errors
MYLK2	85366	broad.mit.edu	36	20	29878309	29878309	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	29878309	29878309	T	A	SNP	MYLK2	NM_033118	human	genbank	54_36p	1	reviewed	missense	c.1131	p.H377Q	0.01	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TTLL9	164395	broad.mit.edu	36	20	29961352	29961352	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	29961352	29961352	G	C	SNP	TTLL9	NM_001008409	human	genbank	54_36p	1	provisional	missense	c.470	p.R157P	1	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
TTLL9	164395	broad.mit.edu	36	20	29994413	29994413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	29994413	29994413	C	T	SNP	TTLL9	ENST00000375919	human	ensembl	54_36p	1	known	missense	c.22	p.R8C	0.09	NULL	NULL	-	no_start_codon
KIF3B	9371	broad.mit.edu	36	20	30378311	30378311	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	30378311	30378311	G	T	SNP	KIF3B	NM_004798	human	genbank	54_36p	1	reviewed	nonsense	c.1825	p.E609*	1	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
ASXL1	171023	broad.mit.edu	36	20	30420578	30420578	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	30420578	30420578	C	T	SNP	ASXL1	NM_015338	human	genbank	54_36p	1	reviewed	silent	c.243	p.F81	1	NULL	NULL	-	no_errors
DNMT3B	1789	broad.mit.edu	36	20	30853861	30853861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	30853861	30853861	G	T	SNP	DNMT3B	NM_006892	human	genbank	54_36p	1	reviewed	missense	c.2155	p.V719L	1	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase"	"superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1"	-	no_errors
SUN5	140732	broad.mit.edu	36	20	31041121	31041121	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	31041121	31041121	G	A	SNP	SPAG4L	NM_080675	human	genbank	54_36p	-1	validated	silent	c.579	p.Y193	1	NULL	HMMPfam_Sad1_UNC	-	no_errors
BPIL1	80341	broad.mit.edu	36	20	31064363	31064363	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	31064363	31064363	C	G	SNP	BPIL1	NM_025227	human	genbank	54_36p	1	reviewed	missense	c.297	p.F99L	0.38	"superfamily_Bactericidal permeability-increasing protein BPI,HMMPfam_LBP_BPI_CETP"	"superfamily_Bactericidal permeability-increasing protein BPI,HMMPfam_LBP_BPI_CETP,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP_C"	-	no_errors
BPIL1	80341	broad.mit.edu	36	20	31065412	31065413	+	Missense_Mutation	DNP	TG	TG	AA	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	31065412	31065413	TG	AA	DNP	BPIL1	NM_025227	human	genbank	54_36p	1	reviewed	missense	c.444_445	p.DG148ES	0.001:0.002	"HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI"	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI"	-	no_errors
BPIL1	80341	broad.mit.edu	36	20	31072044	31072044	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	31072044	31072044	G	A	SNP	BPIL1	NM_025227	human	genbank	54_36p	1	reviewed	missense	c.1184	p.G395D	0.99	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI"	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI"	-	no_errors
BPIL1	80341	broad.mit.edu	36	20	31072778	31072778	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	31072778	31072778	G	A	SNP	BPIL1	NM_025227	human	genbank	54_36p	1	reviewed	missense	c.1225	p.V409I	0.14	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI"	"HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI"	-	no_errors
BPIL3	128859	broad.mit.edu	36	20	31090413	31090413	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	31090413	31090413	C	T	SNP	BPIL3	NM_174897	human	genbank	54_36p	1	provisional	missense	c.884	p.A295V	0.76	"superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C"	"PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C"	-	no_errors
C20orf185	359710	broad.mit.edu	36	20	31108070	31108070	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	31108070	31108070	T	C	SNP	C20orf185	NM_182658	human	genbank	54_36p	1	provisional	silent	c.186	p.A62	0.13	"superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP"	"PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C"	-	no_errors
C20orf71	128861	broad.mit.edu	36	20	31269108	31269108	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	31269108	31269108	C	A	SNP	C20orf71	NM_178466	human	genbank	54_36p	1	validated	missense	c.105	p.D35E	0	superfamily_Bactericidal permeability-increasing protein BPI	"superfamily_Bactericidal permeability-increasing protein BPI,HMMPfam_LBP_BPI_CETP"	-	no_errors
CDK5RAP1	51654	broad.mit.edu	36	20	31424166	31424166	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	31424166	31424166	T	A	SNP	CDK5RAP1	NM_016408	human	genbank	54_36p	-1	reviewed	splice_site	c.1206-2	e9-2	1	-	-	-	no_errors
CDK5RAP1	51654	broad.mit.edu	36	20	31443648	31443648	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	31443648	31443648	G	A	SNP	CDK5RAP1	NM_016408	human	genbank	54_36p	-1	reviewed	missense	c.505	p.R169W	0.18	HMMPfam_UPF0004	"HMMPfam_UPF0004,superfamily_Radical SAM enzymes,HMMSmart_SM00729,PatternScan_UPF0004,HMMPfam_Radical_SAM,HMMPfam_TRAM"	-	no_errors
ZNF341	84905	broad.mit.edu	36	20	31835302	31835302	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	31835302	31835302	A	G	SNP	ZNF341	NM_032819	human	genbank	54_36p	1	validated	missense	c.1802	p.Y601C	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GGT7	2686	broad.mit.edu	36	20	32905997	32905997	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	20	32905997	32905997	G	A	SNP	GGT7	NM_178026	human	genbank	54_36p	-1	reviewed	silent	c.1317	p.L439	1	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept	-	no_errors
GSS	2937	broad.mit.edu	36	20	32994031	32994031	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	32994031	32994031	G	C	SNP	GSS	NM_000178	human	genbank	54_36p	-1	reviewed	missense	c.412	p.P138A	0.85	"superfamily_SSF56059,HMMPfam_GSH_synth_ATP"	"superfamily_SSF56059,HMMPfam_GSH_synth_ATP,HMMPfam_GSH_synthase,superfamily_PreATP-grasp-like"	-	no_errors
MYH7B	57644	broad.mit.edu	36	20	33032158	33032158	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	33032158	33032158	A	G	SNP	MYH7B	NM_020884	human	genbank	54_36p	1	validated	missense	c.585	p.I195M	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head"	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,PatternScan_THIOL_PROTEASE_HIS,superfamily_tRNA-binding arm,HMMPfam_Myosin_tail_1,superfamily_Prefoldin"	-	no_errors
MYH7B	57644	broad.mit.edu	36	20	33048946	33048946	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	33048946	33048946	G	C	SNP	MYH7B	NM_020884	human	genbank	54_36p	1	validated	missense	c.3715	p.A1239P	1	HMMPfam_Myosin_tail_1	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH7B	57644	broad.mit.edu	36	20	33050327	33050327	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	33050327	33050327	A	C	SNP	MYH7B	NM_020884	human	genbank	54_36p	1	validated	missense	c.4264	p.S1422R	1	HMMPfam_Myosin_tail_1	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYH7B	57644	broad.mit.edu	36	20	33051880	33051880	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	33051880	33051880	G	C	SNP	MYH7B	NM_020884	human	genbank	54_36p	1	validated	missense	c.5031	p.Q1677H	1	HMMPfam_Myosin_tail_1	"PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
FAM83C	128876	broad.mit.edu	36	20	33337974	33337974	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	33337974	33337974	G	T	SNP	FAM83C	NM_178468	human	genbank	54_36p	-1	validated	silent	c.2022	p.T674	0.57	NULL	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
CEP250	11190	broad.mit.edu	36	20	33549214	33549214	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	33549214	33549214	T	C	SNP	CEP250	NM_007186	human	genbank	54_36p	1	reviewed	missense	c.3559	p.S1187P	0.05	NULL	superfamily_Prefoldin	-	no_errors
SPAG4	6676	broad.mit.edu	36	20	33668553	33668553	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	33668553	33668553	C	G	SNP	SPAG4	NM_003116	human	genbank	54_36p	1	reviewed	missense	c.386	p.P129R	0	NULL	HMMPfam_Sad1_UNC	-	no_errors
RBM12	10137	broad.mit.edu	36	20	33705462	33705462	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	33705462	33705462	T	C	SNP	RBM12	NM_006047	human	genbank	54_36p	-1	reviewed	silent	c.1197	p.G399	0.98	superfamily_RNA-binding domain RBD	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
RBM12	10137	broad.mit.edu	36	20	33705596	33705596	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	33705596	33705596	C	T	SNP	RBM12	NM_006047	human	genbank	54_36p	-1	reviewed	missense	c.1063	p.D355N	1	"HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	-	no_errors
RBM39	9584	broad.mit.edu	36	20	33773163	33773163	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	33773163	33773163	A	G	SNP	RBM39	NM_184234	human	genbank	54_36p	-1	reviewed	silent	c.738	p.S246	1	NULL	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMSmart_SM00361"	-	no_errors
PHF20	51230	broad.mit.edu	36	20	33990179	33990179	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	33990179	33990179	T	A	SNP	PHF20	NM_016436	human	genbank	54_36p	1	validated	missense	c.2447	p.V816E	1	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1"	-	no_errors
EPB41L1	2036	broad.mit.edu	36	20	34260898	34260898	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	34260898	34260898	C	T	SNP	EPB41L1	NM_012156	human	genbank	54_36p	1	reviewed	silent	c.1743	p.G581	0.89	NULL	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD"	-	no_errors
TGIF2	60436	broad.mit.edu	36	20	34653074	34653074	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	34653074	34653074	C	T	SNP	TGIF2	NM_021809	human	genbank	54_36p	1	reviewed	silent	c.540	p.F180	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
NDRG3	57446	broad.mit.edu	36	20	34715422	34715422	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	34715422	34715422	G	T	SNP	NDRG3	NM_032013	human	genbank	54_36p	-1	validated	missense	c.1043	p.T348N	0.95	NULL	"superfamily_alpha/beta-Hydrolases,HMMPfam_Ndr"	-	no_errors
DSN1	79980	broad.mit.edu	36	20	34832691	34832691	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	34832691	34832691	T	G	SNP	DSN1	NM_024918	human	genbank	54_36p	-1	reviewed	silent	c.354	p.T118	1	HMMPfam_Mis12_component	HMMPfam_Mis12_component	-	no_errors
C20orf117	140710	broad.mit.edu	36	20	34858719	34858719	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	34858719	34858719	A	G	SNP	C20orf117	NM_199181	human	genbank	54_36p	-1	predicted	silent	c.2748	p.L916	0.98	NULL	NULL	-	no_errors
C20orf117	140710	broad.mit.edu	36	20	34877221	34877221	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	34877221	34877221	C	A	SNP	C20orf117	NM_199181	human	genbank	54_36p	-1	predicted	missense	c.1324	p.G442C	0.35	NULL	NULL	-	no_errors
C20orf117	140710	broad.mit.edu	36	20	34877606	34877606	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	34877606	34877606	G	A	SNP	C20orf117	NM_199181	human	genbank	54_36p	-1	predicted	silent	c.939	p.H313	0.94	NULL	NULL	-	no_errors
C20orf117	140710	broad.mit.edu	36	20	34877701	34877701	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	34877701	34877701	C	T	SNP	C20orf117	NM_199181	human	genbank	54_36p	-1	predicted	missense	c.844	p.E282K	1	NULL	NULL	-	no_errors
C20orf117	140710	broad.mit.edu	36	20	34901120	34901120	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	34901120	34901120	G	C	SNP	C20orf117	NM_199181	human	genbank	54_36p	-1	predicted	missense	c.112	p.R38G	1	NULL	NULL	-	no_errors
C20orf118	140711	broad.mit.edu	36	20	34940984	34940984	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	34940984	34940984	C	T	SNP	C20orf118	NM_080628	human	genbank	54_36p	1	predicted	silent	c.316	p.L106	1	"HMMSmart_TLDc,HMMPfam_TLD"	"HMMSmart_TLDc,HMMPfam_TLD"	-	no_errors
RBL1	5933	broad.mit.edu	36	20	35069252	35069252	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	35069252	35069252	G	A	SNP	RBL1	NM_002895	human	genbank	54_36p	-1	reviewed	silent	c.2847	p.Y949	0.92	superfamily_Cyclin-like	"HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385"	-	no_errors
GHRH	2691	broad.mit.edu	36	20	35318268	35318268	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	35318268	35318268	A	C	SNP	GHRH	NM_021081	human	genbank	54_36p	-1	reviewed	missense	c.131	p.V44G	1	"PatternScan_GLUCAGON,HMMSmart_SM00070,HMMPfam_Hormone_2"	"PatternScan_GLUCAGON,HMMSmart_SM00070,HMMPfam_Hormone_2"	-	no_errors
CTNNBL1	56259	broad.mit.edu	36	20	35922122	35922122	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	35922122	35922122	G	A	SNP	CTNNBL1	NM_030877	human	genbank	54_36p	1	reviewed	missense	c.1565	p.R522Q	1	NULL	"HMMPfam_DUF1716,superfamily_ARM repeat"	-	no_errors
VSTM2L	128434	broad.mit.edu	36	20	36005858	36005858	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	36005858	36005858	C	T	SNP	VSTM2L	NM_080607	human	genbank	54_36p	1	validated	missense	c.404	p.T135M	1	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409"	-	no_errors
TTI1	9675	broad.mit.edu	36	20	36073848	36073848	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	36073848	36073848	G	C	SNP	KIAA0406	NM_014657	human	genbank	54_36p	-1	predicted	missense	c.1785	p.I595M	0.43	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
TTI1	9675	broad.mit.edu	36	20	36075196	36075196	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	36075196	36075196	G	C	SNP	KIAA0406	NM_014657	human	genbank	54_36p	-1	predicted	missense	c.437	p.S146C	0.92	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
TGM2	7052	broad.mit.edu	36	20	36217890	36217890	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	36217890	36217890	T	G	SNP	TGM2	NM_004613	human	genbank	54_36p	-1	reviewed	missense	c.206	p.Q69P	0.15	"superfamily_E set domains,HMMPfam_Transglut_N"	"superfamily_E set domains,HMMPfam_Transglut_N,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C"	-	no_errors
KIAA1755	85449	broad.mit.edu	36	20	36303401	36303401	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	20	36303401	36303401	G	A	SNP	KIAA1755	NM_001029864	human	genbank	54_36p	-1	predicted	silent	c.546	p.T182	0	NULL	superfamily_Spectrin repeat	-	no_errors
KIAA1755	85449	broad.mit.edu	36	20	36303610	36303610	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	36303610	36303610	C	T	SNP	KIAA1755	NM_001029864	human	genbank	54_36p	-1	predicted	missense	c.337	p.E113K	0.63	NULL	superfamily_Spectrin repeat	-	no_errors
BPI	671	broad.mit.edu	36	20	36389418	36389418	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	36389418	36389418	C	T	SNP	BPI	NM_001725	human	genbank	54_36p	1	reviewed	silent	c.1188	p.S396	0	"HMMPfam_LBP_BPI_CETP_C,superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2"	"superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2"	-	no_errors
LBP	3929	broad.mit.edu	36	20	36417215	36417215	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	36417215	36417215	G	C	SNP	LBP	NM_004139	human	genbank	54_36p	1	reviewed	missense	c.580	p.E194Q	0.49	"superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP"	"superfamily_Bactericidal permeability-increasing protein BPI,PatternScan_LBP_BPI_CETP,HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329"	-	no_errors
FAM83D	81610	broad.mit.edu	36	20	37014238	37014238	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	37014238	37014238	C	T	SNP	FAM83D	NM_030919	human	genbank	54_36p	1	validated	silent	c.1509	p.S503	0.99	NULL	"HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease,PatternScan_AA_TRNA_LIGASE_I"	-	no_errors
FAM83D	81610	broad.mit.edu	36	20	37014368	37014368	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	20	37014368	37014368	G	T	SNP	FAM83D	NM_030919	human	genbank	54_36p	1	validated	nonsense	c.1639	p.E547*	0.23	NULL	"PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease"	-	no_errors
TOP1	7150	broad.mit.edu	36	20	39178373	39178373	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	39178373	39178373	C	G	SNP	TOP1	NM_003286	human	genbank	54_36p	1	reviewed	silent	c.1749	p.G583	1	"superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I"	###############################################################################################################################################################################################################################################################	-	no_errors
LPIN3	64900	broad.mit.edu	36	20	39410818	39410818	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	39410818	39410818	G	C	SNP	LPIN3	NM_022896	human	genbank	54_36p	1	validated	missense	c.434	p.R145P	0.39	NULL	"HMMPfam_Lipin_N,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775"	-	no_errors
LPIN3	64900	broad.mit.edu	36	20	39410832	39410832	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	39410832	39410832	C	G	SNP	LPIN3	NM_022896	human	genbank	54_36p	1	validated	missense	c.448	p.P150A	0.18	NULL	"HMMPfam_Lipin_N,HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like"	-	no_errors
LPIN3	64900	broad.mit.edu	36	20	39420549	39420549	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	39420549	39420549	C	T	SNP	LPIN3	NM_022896	human	genbank	54_36p	1	validated	silent	c.2364	p.N788	1	"HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like"	"HMMPfam_Lipin_N,HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like"	-	no_errors
EMILIN3	90187	broad.mit.edu	36	20	39423778	39423778	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	39423778	39423778	G	C	SNP	EMILIN3	NM_052846	human	genbank	54_36p	-1	validated	silent	c.1845	p.A615	1	NULL	HMMPfam_EMI	-	no_errors
CHD6	84181	broad.mit.edu	36	20	39553869	39553869	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	39553869	39553869	C	T	SNP	CHD6	NM_032221	human	genbank	54_36p	-1	reviewed	missense	c.1319	p.R440Q	1	superfamily_P-loop containing nucleoside triphosphate hydrolases	"superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592"	-	no_errors
TOX2	84969	broad.mit.edu	36	20	42008055	42008055	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	42008055	42008055	C	A	SNP	TOX2	NM_001098798	human	genbank	54_36p	1	validated	missense	c.89	p.A30E	0.49	NULL	"superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box"	-	no_errors
HNF4A	3172	broad.mit.edu	36	20	42490438	42490438	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	42490438	42490438	G	A	SNP	HNF4A	NM_000457	human	genbank	54_36p	1	reviewed	silent	c.1179	p.L393	1	NULL	"HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep"	-	no_errors
TTPAL	79183	broad.mit.edu	36	20	42542284	42542284	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	42542284	42542284	C	T	SNP	TTPAL	NM_001039199	human	genbank	54_36p	1	validated	silent	c.231	p.D77	0.96	"superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N"	"superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,superfamily_CRAL_TRIO_C,HMMSmart_SEC14,HMMPfam_CRAL_TRIO"	-	no_errors
ADA	100	broad.mit.edu	36	20	42684907	42684907	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	42684907	42684907	G	A	SNP	ADA	NM_000022	human	genbank	54_36p	-1	reviewed	missense	c.757	p.R253W	0.48	"superfamily_SSF51556,HMMPfam_A_deaminase"	"superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE"	-	no_errors
RIMS4	140730	broad.mit.edu	36	20	42818335	42818335	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	20	42818335	42818335	C	G	SNP	RIMS4	NM_182970	human	genbank	54_36p	-1	validated	missense	c.664	p.E222Q	1	"superfamily_C2_CaLB,HMMSmart_C2"	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
RIMS4	140730	broad.mit.edu	36	20	42820154	42820154	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	20	42820154	42820154	G	A	SNP	RIMS4	NM_182970	human	genbank	54_36p	-1	validated	missense	c.322	p.R108C	1	NULL	"HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB"	-	no_errors
YWHAB	7529	broad.mit.edu	36	20	42966059	42966059	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	42966059	42966059	C	G	SNP	YWHAB	NM_003404	human	genbank	54_36p	1	reviewed	missense	c.312	p.D104E	1	"superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101"	"superfamily_14-3-3 protein,HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2"	-	no_errors
PABPC1L	80336	broad.mit.edu	36	20	42983785	42983785	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	42983785	42983785	A	C	SNP	PABPC1L	ENST00000217073	human	ensembl	54_36p	1	known	missense	c.875	p.Q292P	1	superfamily_SSF54928	"superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA"	-	no_errors
STK4	6789	broad.mit.edu	36	20	43137155	43137155	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	43137155	43137155	G	A	SNP	STK4	NM_006282	human	genbank	54_36p	1	reviewed	missense	c.1388	p.R463Q	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP"	-	no_errors
KCNS1	3787	broad.mit.edu	36	20	43160331	43160331	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	43160331	43160331	C	A	SNP	KCNS1	NM_002251	human	genbank	54_36p	-1	reviewed	missense	c.496	p.A166S	0.01	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
WFDC5	149708	broad.mit.edu	36	20	43172775	43172775	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	43172775	43172775	G	A	SNP	WFDC5	NM_145652	human	genbank	54_36p	-1	reviewed	silent	c.141	p.D47	0.99	"superfamily_Elafin-like,HMMPfam_WAP,HMMSmart_SM00217"	"superfamily_Elafin-like,HMMPfam_WAP,HMMSmart_SM00217,PatternScan_4_DISULFIDE_CORE"	-	no_errors
MATN4	8785	broad.mit.edu	36	20	43366381	43366381	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	43366381	43366381	G	A	SNP	MATN4	NM_003833	human	genbank	54_36p	-1	reviewed	missense	c.544	p.R182C	1	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil"	-	no_errors
MATN4	8785	broad.mit.edu	36	20	43366781	43366781	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	43366781	43366781	G	A	SNP	MATN4	NM_003833	human	genbank	54_36p	-1	reviewed	silent	c.144	p.F48	0.91	"HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300"	"PatternScan_ASX_HYDROXYL,HMMPfam_VWA,HMMSmart_VWA,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil,superfamily_SSF53300,superfamily_SSF57196"	-	no_errors
RBPJL	11317	broad.mit.edu	36	20	43378933	43378933	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	43378933	43378933	G	A	SNP	RBPJL	NM_014276	human	genbank	54_36p	1	reviewed	missense	c.1474	p.A492T	0	NULL	"superfamily_P53_like_DNA_bnd,HMMPfam_LAG1-DNAbind,superfamily_Beta-trefoil,HMMPfam_Beta-trefoil,superfamily_Ig_E-set,HMMPfam_TIG"	-	no_errors
DNTTIP1	116092	broad.mit.edu	36	20	43857488	43857488	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	43857488	43857488	A	G	SNP	DNTTIP1	NM_052951	human	genbank	54_36p	1	validated	missense	c.371	p.Q124R	1	NULL	NULL	-	no_errors
DNTTIP1	116092	broad.mit.edu	36	20	43863484	43863484	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	43863484	43863484	G	T	SNP	DNTTIP1	NM_052951	human	genbank	54_36p	1	validated	nonsense	c.478	p.G160*	1	NULL	NULL	-	no_errors
ZSWIM3	140831	broad.mit.edu	36	20	43940621	43940621	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	43940621	43940621	C	T	SNP	ZSWIM3	NM_080752	human	genbank	54_36p	1	validated	missense	c.2017	p.R673C	0.27	NULL	"HMMPfam_MULE,HMMPfam_SWIM,HMMSmart_ZnF_PMZ"	-	no_errors
PLTP	5360	broad.mit.edu	36	20	43971666	43971666	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	43971666	43971666	A	C	SNP	PLTP	NM_006227	human	genbank	54_36p	-1	reviewed	silent	c.381	p.T127	0.01	"superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP"	"superfamily_Bactericidal permeability-increasing protein BPI,PatternScan_LBP_BPI_CETP,HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329"	-	no_errors
ZNF335	63925	broad.mit.edu	36	20	44025810	44025810	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	44025810	44025810	C	T	SNP	ZNF335	NM_022095	human	genbank	54_36p	-1	reviewed	silent	c.1329	p.R443	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF335	63925	broad.mit.edu	36	20	44030397	44030397	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	44030397	44030397	C	G	SNP	ZNF335	NM_022095	human	genbank	54_36p	-1	reviewed	missense	c.454	p.V152L	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
SLC12A5	57468	broad.mit.edu	36	20	44111793	44111793	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	20	44111793	44111793	G	A	SNP	SLC12A5	NM_020708	human	genbank	54_36p	1	reviewed	missense	c.2138	p.G713D	1	NULL	HMMPfam_AA_permease	-	no_errors
CD40	958	broad.mit.edu	36	20	44184735	44184735	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	20	44184735	44184735	G	A	SNP	CD40	NM_001250	human	genbank	54_36p	1	reviewed	silent	c.336	p.T112	0	"superfamily_TNF receptor-like,PatternScan_EGF_2,HMMSmart_SM00208"	"superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_EGF_2"	-	no_errors
CDH22	64405	broad.mit.edu	36	20	44248709	44248709	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	44248709	44248709	C	A	SNP	CDH22	NM_021248	human	genbank	54_36p	-1	reviewed	missense	c.1588	p.G530C	0.01	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
CDH22	64405	broad.mit.edu	36	20	44275062	44275062	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	44275062	44275062	C	T	SNP	CDH22	NM_021248	human	genbank	54_36p	-1	reviewed	silent	c.1011	p.E337	0.99	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	"HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like"	-	no_errors
ELMO2	63916	broad.mit.edu	36	20	44437793	44437793	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	44437793	44437793	T	A	SNP	ELMO2	NM_133171	human	genbank	54_36p	-1	reviewed	missense	c.851	p.H284L	1	NULL	"superfamily_ARM repeat,HMMPfam_ELMO_CED12,superfamily_PH domain-like"	-	no_errors
ZNF334	55713	broad.mit.edu	36	20	44563870	44563870	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	44563870	44563870	A	G	SNP	ZNF334	NM_018102	human	genbank	54_36p	-1	validated	silent	c.1515	p.S505	0	superfamily_SSF57667	"superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SLC2A10	81031	broad.mit.edu	36	20	44788315	44788315	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	44788315	44788315	C	T	SNP	SLC2A10	NM_030777	human	genbank	54_36p	1	validated	silent	c.1233	p.T411	0	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr"	"superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1"	-	no_errors
EYA2	2139	broad.mit.edu	36	20	45159136	45159136	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	45159136	45159136	G	C	SNP	EYA2	NM_172113	human	genbank	54_36p	1	reviewed	silent	c.825	p.V275	1	HMMPfam_Hydrolase	HMMPfam_Hydrolase	-	no_errors
NCOA3	8202	broad.mit.edu	36	20	45698233	45698233	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	20	45698233	45698233	G	T	SNP	NCOA3	NM_181659	human	genbank	54_36p	1	reviewed	missense	c.1696	p.D566Y	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
SULF2	55959	broad.mit.edu	36	20	45734476	45734476	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	45734476	45734476	C	T	SNP	SULF2	NM_018837	human	genbank	54_36p	-1	validated	silent	c.1449	p.L483	0	superfamily_Alkaline phosphatase-like	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like,PatternScan_SULFATASE_1"	-	no_errors
SULF2	55959	broad.mit.edu	36	20	45798887	45798887	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	45798887	45798887	C	A	SNP	SULF2	NM_018837	human	genbank	54_36p	-1	validated	missense	c.382	p.A128S	1	"HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like"	"HMMPfam_Sulfatase,PatternScan_SULFATASE_1,superfamily_Alkaline phosphatase-like"	-	no_errors
PREX1	57580	broad.mit.edu	36	20	46738641	46738641	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	46738641	46738641	C	T	SNP	PREX1	NM_020820	human	genbank	54_36p	-1	reviewed	missense	c.1295	p.R432Q	1	"superfamily_Winged helix DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP"	###############################################################################################################################################################################################################################################################	-	no_errors
PREX1	57580	broad.mit.edu	36	20	46758287	46758287	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	46758287	46758287	C	A	SNP	PREX1	NM_020820	human	genbank	54_36p	-1	reviewed	missense	c.701	p.C234F	1	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)"	###############################################################################################################################################################################################################################################################	-	no_errors
CSE1L	1434	broad.mit.edu	36	20	47139278	47139278	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	47139278	47139278	G	T	SNP	CSE1L	NM_001316	human	genbank	54_36p	1	reviewed	missense	c.1909	p.V637F	1	"superfamily_ARM repeat,HMMPfam_CAS_CSE1"	"superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_Cse1,HMMPfam_CAS_CSE1"	-	no_errors
STAU1	6780	broad.mit.edu	36	20	47169963	47169963	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	47169963	47169963	G	A	SNP	STAU1	NM_017453	human	genbank	54_36p	-1	reviewed	missense	c.1076	p.A359V	1	superfamily_dsRNA-binding domain-like	"superfamily_dsRNA-binding domain-like,HMMSmart_SM00358,HMMPfam_dsrm"	-	no_errors
STAU1	6780	broad.mit.edu	36	20	47174417	47174417	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	47174417	47174417	C	T	SNP	STAU1	NM_017453	human	genbank	54_36p	-1	reviewed	missense	c.724	p.A242T	1	"HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like"	"HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like"	-	no_errors
ZNFX1	57169	broad.mit.edu	36	20	47298610	47298610	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	47298610	47298610	A	C	SNP	ZNFX1	NM_021035	human	genbank	54_36p	-1	validated	missense	c.4358	p.F1453C	0.58	HMMPfam_zf-NF-X1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_zf-NF-X1,HMMSmart_SM00438"	-	no_errors
PTGIS	5740	broad.mit.edu	36	20	47563206	47563206	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	47563206	47563206	C	T	SNP	PTGIS	NM_000961	human	genbank	54_36p	-1	reviewed	splice_site	c.1025-1	e8-1	1	-	-	-	no_errors
PTGIS	5740	broad.mit.edu	36	20	47564290	47564290	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	47564290	47564290	T	C	SNP	PTGIS	NM_000961	human	genbank	54_36p	-1	reviewed	missense	c.905	p.N302S	1	"superfamily_Cytochrome_P450,HMMPfam_p450"	"PatternScan_CYTOCHROME_P450,superfamily_Cytochrome_P450,HMMPfam_p450"	-	no_errors
B4GALT5	9334	broad.mit.edu	36	20	47696935	47696935	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	47696935	47696935	G	T	SNP	B4GALT5	NM_004776	human	genbank	54_36p	-1	validated	missense	c.338	p.T113N	0.9	superfamily_SSF53448	"superfamily_SSF53448,HMMPfam_Galactosyl_T_2"	-	no_errors
SPATA2	9825	broad.mit.edu	36	20	47955616	47955616	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	47955616	47955616	T	G	SNP	SPATA2	NM_006038	human	genbank	54_36p	-1	validated	missense	c.1510	p.N504H	1	NULL	NULL	-	no_errors
SNAI1	6615	broad.mit.edu	36	20	48033829	48033829	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	48033829	48033829	G	C	SNP	SNAI1	NM_005985	human	genbank	54_36p	1	reviewed	missense	c.144	p.E48D	1	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
SNAI1	6615	broad.mit.edu	36	20	48037849	48037849	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	48037849	48037849	G	A	SNP	SNAI1	NM_005985	human	genbank	54_36p	1	reviewed	missense	c.644	p.R215H	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
FAM65C	140876	broad.mit.edu	36	20	48669995	48669995	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	48669995	48669995	C	T	SNP	FAM65C	NM_080829	human	genbank	54_36p	-1	predicted	silent	c.192	p.S64	0	NULL	NULL	-	no_errors
BCAS4	55653	broad.mit.edu	36	20	48926541	48926541	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	48926541	48926541	C	T	SNP	BCAS4	NM_198799	human	genbank	54_36p	1	validated	missense	c.601	p.R201W	0	NULL	NULL	-	no_errors
ADNP	23394	broad.mit.edu	36	20	48952048	48952048	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	48952048	48952048	A	G	SNP	ADNP	NM_015339	human	genbank	54_36p	-1	reviewed	silent	c.114	p.F38	1	NULL	"PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	-	no_errors
DPM1	8813	broad.mit.edu	36	20	49008446	49008446	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	49008446	49008446	G	T	SNP	DPM1	NM_003859	human	genbank	54_36p	-1	reviewed	missense	c.22	p.R8S	0	NULL	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2"	-	no_errors
KCNG1	100128598	broad.mit.edu	36	20	49059728	49059728	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	49059728	49059728	C	T	SNP	LOC100128598	XM_001716142	human	genbank	54_36p	1	model	missense	c.1207	p.L403F	1	NULL	NULL	-	no_errors
KCNG1	100128598	broad.mit.edu	36	20	49060031	49060031	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	49060031	49060031	G	T	SNP	LOC100128598	XM_001716142	human	genbank	54_36p	1	model	nonsense	c.1510	p.E504*	1	NULL	NULL	-	no_errors
ATP9A	10079	broad.mit.edu	36	20	49657506	49657506	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	49657506	49657506	A	C	SNP	ATP9A	NM_006045	human	genbank	54_36p	-1	validated	missense	c.2770	p.F924V	1	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ATP9A	10079	broad.mit.edu	36	20	49667453	49667453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	49667453	49667453	C	T	SNP	ATP9A	NM_006045	human	genbank	54_36p	-1	validated	missense	c.2398	p.V800M	1	"HMMPfam_Hydrolase,superfamily_HAD-like"	"HMMPfam_Hydrolase,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
SALL4	57167	broad.mit.edu	36	20	49840118	49840118	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	49840118	49840118	C	T	SNP	SALL4	NM_020436	human	genbank	54_36p	-1	reviewed	missense	c.2311	p.E771K	1	NULL	"HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
SALL4	57167	broad.mit.edu	36	20	49840821	49840821	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	49840821	49840821	G	C	SNP	SALL4	NM_020436	human	genbank	54_36p	-1	reviewed	missense	c.1608	p.F536L	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
SALL4	57167	broad.mit.edu	36	20	49841662	49841662	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	49841662	49841662	G	C	SNP	SALL4	NM_020436	human	genbank	54_36p	-1	reviewed	missense	c.767	p.T256S	0.98	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZFP64	55734	broad.mit.edu	36	20	50203113	50203113	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	50203113	50203113	G	T	SNP	ZFP64	NM_018197	human	genbank	54_36p	-1	validated	missense	c.1025	p.P342H	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
TSHZ2	128553	broad.mit.edu	36	20	51305913	51305913	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	51305913	51305913	A	G	SNP	TSHZ2	NM_173485	human	genbank	54_36p	1	validated	missense	c.2509	p.T837A	0.98	NULL	"PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX,HMMPfam_Homeobox,HMMPfam_zf-C2H2"	-	no_errors
TSHZ2	128553	broad.mit.edu	36	20	51306065	51306065	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	51306065	51306065	G	T	SNP	TSHZ2	NM_173485	human	genbank	54_36p	1	validated	missense	c.2661	p.K887N	1	"HMMPfam_Homeobox,HMMSmart_HOX"	"HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1"	-	no_errors
ZNF217	7764	broad.mit.edu	36	20	51625714	51625714	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	51625714	51625714	C	G	SNP	ZNF217	NM_006526	human	genbank	54_36p	-1	validated	missense	c.2996	p.C999S	0.7	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
BCAS1	8537	broad.mit.edu	36	20	52025338	52025338	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	52025338	52025338	C	A	SNP	BCAS1	NM_003657	human	genbank	54_36p	-1	reviewed	missense	c.1179	p.E393D	1	NULL	NULL	-	no_errors
CYP24A1	1591	broad.mit.edu	36	20	52215711	52215711	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	52215711	52215711	T	A	SNP	CYP24A1	NM_000782	human	genbank	54_36p	-1	reviewed	missense	c.709	p.N237Y	1	"HMMPfam_p450,superfamily_Cytochrome_P450"	"HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450"	-	no_errors
DOK5	55816	broad.mit.edu	36	20	52638452	52638452	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	52638452	52638452	G	A	SNP	DOK5	NM_018431	human	genbank	54_36p	1	reviewed	silent	c.198	p.K66	1	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00310,HMMPfam_IRS"	-	no_errors
MC3R	4159	broad.mit.edu	36	20	54257451	54257451	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	54257451	54257451	G	C	SNP	MC3R	NM_019888	human	genbank	54_36p	1	reviewed	missense	c.256	p.G86R	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MC3R	4159	broad.mit.edu	36	20	54257504	54257504	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	54257504	54257504	C	T	SNP	MC3R	NM_019888	human	genbank	54_36p	1	reviewed	silent	c.309	p.N103	0.98	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
MC3R	4159	broad.mit.edu	36	20	54257958	54257958	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	54257958	54257958	G	A	SNP	MC3R	NM_019888	human	genbank	54_36p	1	reviewed	missense	c.763	p.V255I	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
CASS4	57091	broad.mit.edu	36	20	54454391	54454391	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	54454391	54454391	G	A	SNP	CASS4	NM_020356	human	genbank	54_36p	1	validated	missense	c.488	p.R163Q	0.04	NULL	"superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_Serine_rich"	-	no_errors
CASS4	57091	broad.mit.edu	36	20	54461131	54461131	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	54461131	54461131	C	T	SNP	CASS4	NM_020356	human	genbank	54_36p	1	validated	nonsense	c.1492	p.R498*	0.14	HMMPfam_Serine_rich	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich"	-	no_errors
CASS4	57091	broad.mit.edu	36	20	54466892	54466892	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	54466892	54466892	G	A	SNP	CASS4	NM_020356	human	genbank	54_36p	1	validated	silent	c.2043	p.G681	0.99	NULL	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich"	-	no_errors
RBM38	55544	broad.mit.edu	36	20	55401144	55401144	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	55401144	55401144	A	G	SNP	RBM38	ENST00000342690	human	ensembl	54_36p	1	known	missense	c.263	p.E88G	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
CTCFL	140690	broad.mit.edu	36	20	55511966	55511966	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	55511966	55511966	A	G	SNP	CTCFL	NM_080618	human	genbank	54_36p	-1	reviewed	missense	c.1772	p.I591T	0	NULL	"HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
CTCFL	140690	broad.mit.edu	36	20	55532494	55532494	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	55532494	55532494	G	T	SNP	CTCFL	NM_080618	human	genbank	54_36p	-1	reviewed	missense	c.174	p.D58E	0	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZBP1	81030	broad.mit.edu	36	20	55621672	55621672	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	55621672	55621672	A	G	SNP	ZBP1	NM_030776	human	genbank	54_36p	-1	provisional	missense	c.623	p.I208T	0.92	NULL	"HMMSmart_SM00550,HMMPfam_z-alpha,superfamily_Winged helix DNA-binding domain"	-	no_errors
ZBP1	81030	broad.mit.edu	36	20	55623407	55623407	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	55623407	55623407	C	G	SNP	ZBP1	NM_030776	human	genbank	54_36p	-1	provisional	missense	c.444	p.K148N	0	HMMSmart_SM00550	"HMMPfam_z-alpha,HMMSmart_SM00550,superfamily_Winged helix DNA-binding domain"	-	no_errors
STX16	8675	broad.mit.edu	36	20	56684661	56684661	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	56684661	56684661	C	T	SNP	STX16	NM_001001433	human	genbank	54_36p	1	reviewed	nonsense	c.886	p.Q296*	1	HMMPfam_SNARE	"superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN"	-	no_errors
GNAS	2778	broad.mit.edu	36	20	56913889	56913889	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	56913889	56913889	C	G	SNP	GNAS	NM_001077488	human	genbank	54_36p	1	reviewed	nonsense	c.492	p.Y164*	0.98	"HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert"	"HMMPfam_G-alpha,superfamily_SSF52540,superfamily_Transducn_insert"	-	no_errors
GNAS	2778	broad.mit.edu	36	20	56918234	56918234	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	20	56918234	56918234	C	G	SNP	GNAS	NM_001077488	human	genbank	54_36p	1	reviewed	missense	c.822	p.F274L	1	"HMMPfam_G-alpha,superfamily_SSF52540"	"HMMPfam_G-alpha,superfamily_Transducn_insert,superfamily_SSF52540"	-	no_errors
TH1L	51497	broad.mit.edu	36	20	56999478	56999478	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	56999478	56999478	G	A	SNP	TH1L	NM_198976	human	genbank	54_36p	1	reviewed	missense	c.934	p.V312I	1	HMMPfam_TH1	HMMPfam_TH1	-	no_errors
TUBB1	81027	broad.mit.edu	36	20	57032379	57032379	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	57032379	57032379	A	T	SNP	TUBB1	NM_030773	human	genbank	54_36p	1	validated	missense	c.502	p.S168C	1	"superfamily_Tubulin_FtsZ,HMMPfam_Tubulin"	"PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C"	-	no_errors
ZNF831	128611	broad.mit.edu	36	20	57215425	57215425	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	57215425	57215425	C	T	SNP	ZNF831	NM_178457	human	genbank	54_36p	1	provisional	nonsense	c.3946	p.R1316*	0	NULL	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF831	128611	broad.mit.edu	36	20	57262744	57262744	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	57262744	57262744	C	A	SNP	ZNF831	NM_178457	human	genbank	54_36p	1	provisional	missense	c.4585	p.P1529T	0.01	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
PHACTR3	116154	broad.mit.edu	36	20	57751584	57751584	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	20	57751584	57751584	G	A	SNP	PHACTR3	NM_080672	human	genbank	54_36p	1	reviewed	missense	c.146	p.R49H	1	NULL	"HMMSmart_SM00707,HMMPfam_RPEL"	-	no_errors
PHACTR3	116154	broad.mit.edu	36	20	57763775	57763775	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	57763775	57763775	G	A	SNP	PHACTR3	NM_080672	human	genbank	54_36p	1	reviewed	missense	c.502	p.D168N	0.01	NULL	"HMMPfam_RPEL,HMMSmart_SM00707"	-	no_errors
SYCP2	10388	broad.mit.edu	36	20	57882379	57882379	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	57882379	57882379	G	A	SNP	SYCP2	NM_014258	human	genbank	54_36p	-1	reviewed	missense	c.3482	p.S1161L	0.55	NULL	NULL	-	no_errors
C20orf177	63939	broad.mit.edu	36	20	57953240	57953240	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	57953240	57953240	A	T	SNP	C20orf177	NM_022106	human	genbank	54_36p	1	predicted	missense	c.847	p.R283W	0.03	NULL	NULL	-	no_errors
C20orf197	284756	broad.mit.edu	36	20	58079162	58079162	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	58079162	58079162	T	C	SNP	C20orf197	NM_173644	human	genbank	54_36p	1	predicted	missense	c.185	p.L62P	0	NULL	NULL	-	no_errors
CDH4	1002	broad.mit.edu	36	20	59853122	59853122	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	20	59853122	59853122	C	T	SNP	CDH4	NM_001794	human	genbank	54_36p	1	reviewed	missense	c.580	p.R194W	1	"superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA"	"superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C"	-	no_errors
TAF4	6874	broad.mit.edu	36	20	59984726	59984726	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	59984726	59984726	T	C	SNP	TAF4	NM_003185	human	genbank	54_36p	-1	reviewed	missense	c.3151	p.T1051A	1	HMMPfam_TAF4	"HMMPfam_TAFH,HMMSmart_TAFH,HMMPfam_TAF4,superfamily_Histone-fold"	-	no_errors
TAF4	6874	broad.mit.edu	36	20	60023144	60023144	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	60023144	60023144	G	C	SNP	TAF4	NM_003185	human	genbank	54_36p	-1	reviewed	missense	c.1375	p.R459G	1	NULL	"HMMPfam_TAFH,HMMSmart_TAFH,HMMPfam_TAF4,superfamily_Histone-fold"	-	no_errors
SS18L1	26039	broad.mit.edu	36	20	60183019	60183019	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	60183019	60183019	G	A	SNP	SS18L1	NM_198935	human	genbank	54_36p	1	validated	missense	c.1088	p.G363D	1	NULL	HMMPfam_SSXT	-	no_errors
OSBPL2	9885	broad.mit.edu	36	20	60280615	60280615	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	20	60280615	60280615	C	T	SNP	OSBPL2	NM_144498	human	genbank	54_36p	1	reviewed	missense	c.298	p.P100S	1	HMMPfam_Oxysterol_BP	"HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
SLCO4A1	28231	broad.mit.edu	36	20	60768244	60768244	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	60768244	60768244	G	C	SNP	SLCO4A1	NM_016354	human	genbank	54_36p	1	validated	missense	c.1344	p.R448S	1	"HMMPfam_OATP,superfamily_MFS general substrate transporter"	"HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2"	-	no_errors
DIDO1	11083	broad.mit.edu	36	20	60981578	60981578	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	60981578	60981578	G	C	SNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	missense	c.6175	p.P2059A	0.19	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC"	-	no_errors
DIDO1	11083	broad.mit.edu	36	20	60982318	60982318	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	60982318	60982318	G	A	SNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	missense	c.5435	p.S1812L	0.99	NULL	"HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
DIDO1	11083	broad.mit.edu	36	20	60983697	60983697	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	60983697	60983697	G	A	SNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	silent	c.4056	p.D1352	0	NULL	"HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
DIDO1	11083	broad.mit.edu	36	20	60984142	60984143	+	Missense_Mutation	DNP	TT	TT	GC	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	60984142	60984143	TT	GC	DNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	missense	c.3611_3610	p.N1204A	0.000:0.004	NULL	"HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
DIDO1	11083	broad.mit.edu	36	20	61011659	61011659	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	61011659	61011659	G	A	SNP	DIDO1	NM_033081	human	genbank	54_36p	-1	reviewed	missense	c.998	p.A333V	0.29	NULL	"HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
SLC17A9	63910	broad.mit.edu	36	20	61067431	61067431	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	61067431	61067431	G	A	SNP	SLC17A9	NM_022082	human	genbank	54_36p	1	validated	missense	c.970	p.V324I	0.96	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1"	"superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_2"	-	no_errors
NKAIN4	128414	broad.mit.edu	36	20	61351772	61351773	+	Missense_Mutation	DNP	AG	AG	GC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61351772	61351773	AG	GC	DNP	NKAIN4	NM_152864	human	genbank	54_36p	-1	provisional	missense	c.152_151	p.L51A	1.000:1.000	HMMPfam_NKAIN	HMMPfam_NKAIN	-	no_errors
COL20A1	81578	broad.mit.edu	36	20	61399771	61399771	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61399771	61399771	G	A	SNP	COL20A1	ENST00000326996	human	ensembl	54_36p	1	known	silent	c.147	p.S49	0.15	"HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III"	"HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen"	-	no_errors
KCNQ2	3785	broad.mit.edu	36	20	61544327	61544327	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61544327	61544327	T	G	SNP	KCNQ2	NM_172107	human	genbank	54_36p	-1	reviewed	missense	c.692	p.E231A	1	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel"	-	no_errors
PPDPF	79144	broad.mit.edu	36	20	61623317	61623317	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61623317	61623317	G	T	SNP	C20orf149	NM_024299	human	genbank	54_36p	1	predicted	missense	c.64	p.G22C	1	NULL	NULL	-	no_errors
PRIC285	85441	broad.mit.edu	36	20	61662454	61662454	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61662454	61662454	T	A	SNP	PRIC285	NM_001037335	human	genbank	54_36p	-1	reviewed	missense	c.7322	p.K2441M	0.01	superfamily_P-loop containing nucleoside triphosphate hydrolases	"PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II"	-	no_errors
GMEB2	26205	broad.mit.edu	36	20	61721179	61721179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61721179	61721179	C	T	SNP	GMEB2	NM_012384	human	genbank	54_36p	-1	reviewed	missense	c.16	p.V6M	1	NULL	"HMMPfam_SAND,superfamily_SAND_like,HMMSmart_SAND"	-	no_errors
ZGPAT	84619	broad.mit.edu	36	20	61810451	61810451	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61810451	61810451	C	A	SNP	ZGPAT	NM_032527	human	genbank	54_36p	1	validated	silent	c.75	p.G25	0.84	NULL	"HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMSmart_SM00443,HMMPfam_G-patch"	-	no_errors
ZGPAT	84619	broad.mit.edu	36	20	61810792	61810792	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	61810792	61810792	A	C	SNP	ZGPAT	NM_032527	human	genbank	54_36p	1	validated	missense	c.416	p.Y139S	1	NULL	"HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_zf-CCCH,HMMSmart_SM00356"	-	no_errors
ZBTB46	140685	broad.mit.edu	36	20	61891960	61891960	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	61891960	61891960	C	A	SNP	ZBTB46	NM_025224	human	genbank	54_36p	-1	provisional	nonsense	c.595	p.E199*	1	NULL	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SAMD10	140700	broad.mit.edu	36	20	62077543	62077543	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	62077543	62077543	C	A	SNP	SAMD10	NM_080621	human	genbank	54_36p	-1	validated	missense	c.532	p.V178L	1	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2"	"superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2"	-	no_errors
PRPF6	24148	broad.mit.edu	36	20	62103026	62103026	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	20	62103026	62103026	T	A	SNP	PRPF6	NM_012469	human	genbank	54_36p	1	reviewed	silent	c.1176	p.V392	1	"superfamily_SSF48452,HMMSmart_HAT"	"HMMPfam_PRP1_N,HMMSmart_HAT,superfamily_SSF48452,HMMPfam_TPR_1"	-	no_errors
OPRL1	4987	broad.mit.edu	36	20	62200170	62200170	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	62200170	62200170	C	T	SNP	OPRL1	NM_000913	human	genbank	54_36p	1	reviewed	silent	c.687	p.L229	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
NPBWR2	2832	broad.mit.edu	36	20	62208521	62208521	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	62208521	62208521	G	T	SNP	NPBWR2	NM_005286	human	genbank	54_36p	-1	reviewed	silent	c.108	p.T36	0.82	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
MYT1	4661	broad.mit.edu	36	20	62318959	62318959	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	20	62318959	62318959	A	G	SNP	MYT1	NM_004535	human	genbank	54_36p	1	reviewed	missense	c.1727	p.E576G	1	HMMPfam_MYT1	"superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1"	-	no_errors
BAGE4	85317	broad.mit.edu	36	21	10120600	10120600	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	10120600	10120600	G	A	SNP	BAGE4	NM_181704	human	genbank	54_36p	-1	provisional	silent	c.9	p.A3	0	HMMPfam_BAGE	HMMPfam_BAGE	-	no_errors
POTED	317754	broad.mit.edu	36	21	13909667	13909667	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	13909667	13909667	G	T	SNP	POTED	NM_174981	human	genbank	54_36p	1	validated	nonsense	c.715	p.G239*	0.11	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248"	-	no_errors
POTED	317754	broad.mit.edu	36	21	13922643	13922643	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	13922643	13922643	A	G	SNP	POTED	NM_174981	human	genbank	54_36p	1	validated	missense	c.1196	p.E399G	0.01	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
LIPI	149998	broad.mit.edu	36	21	14460592	14460592	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	14460592	14460592	C	T	SNP	LIPI	NM_198996	human	genbank	54_36p	-1	validated	missense	c.758	p.G253E	0.81	"HMMPfam_Lipase,superfamily_SSF53474"	"HMMPfam_Lipase,superfamily_SSF53474"	-	no_errors
LIPI	149998	broad.mit.edu	36	21	14483549	14483549	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	14483549	14483549	A	G	SNP	LIPI	NM_198996	human	genbank	54_36p	-1	validated	missense	c.172	p.F58L	0.45	"HMMPfam_Lipase,superfamily_SSF53474"	"HMMPfam_Lipase,superfamily_SSF53474"	-	no_errors
USP25	29761	broad.mit.edu	36	21	16121176	16121176	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	16121176	16121176	A	G	SNP	USP25	NM_013396	human	genbank	54_36p	1	validated	silent	c.1476	p.E492	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_UBA-like,HMMPfam_UIM,HMMSmart_SM00726,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
USP25	29761	broad.mit.edu	36	21	16172057	16172057	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	16172057	16172057	C	T	SNP	USP25	NM_013396	human	genbank	54_36p	1	validated	silent	c.2871	p.I957	1	NULL	"HMMPfam_UCH,HMMPfam_UIM,HMMSmart_SM00726,superfamily_UBA-like,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases"	-	no_errors
C21orf91	54149	broad.mit.edu	36	21	18091034	18091034	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	18091034	18091034	G	C	SNP	C21orf91	NM_001100420	human	genbank	54_36p	-1	validated	missense	c.400	p.Q134E	1	HMMPfam_EURL	HMMPfam_EURL	-	no_errors
TMPRSS15	5651	broad.mit.edu	36	21	18607134	18607134	+	Missense_Mutation	SNP	C	C	A	rs34942696	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	18607134	18607134	C	A	SNP	PRSS7	NM_002772	human	genbank	54_36p	-1	reviewed	missense	c.2164	p.G722W	0.97	"superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR"	###############################################################################################################################################################################################################################################################	-	no_errors
TMPRSS15	5651	broad.mit.edu	36	21	18637753	18637753	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	18637753	18637753	T	A	SNP	PRSS7	NM_002772	human	genbank	54_36p	-1	reviewed	missense	c.1369	p.N457Y	1	"HMMPfam_MAM,HMMSmart_SM00137"	###############################################################################################################################################################################################################################################################	-	no_errors
TMPRSS15	5651	broad.mit.edu	36	21	18647201	18647201	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	21	18647201	18647201	C	A	SNP	PRSS7	NM_002772	human	genbank	54_36p	-1	reviewed	missense	c.1061	p.C354F	1	"HMMPfam_MAM,HMMSmart_SM00137"	###############################################################################################################################################################################################################################################################	-	no_errors
TMPRSS15	5651	broad.mit.edu	36	21	18697686	18697686	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	21	18697686	18697686	G	T	SNP	PRSS7	NM_002772	human	genbank	54_36p	-1	reviewed	missense	c.125	p.T42K	0.81	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
NCAM2	4685	broad.mit.edu	36	21	21578592	21578592	+	Splice_Site	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	21578592	21578592	G	A	SNP	NCAM2	NM_004540	human	genbank	54_36p	1	reviewed	splice_site	c.337+1	e3+1	1	-	-	-	no_errors
NCAM2	4685	broad.mit.edu	36	21	21762925	21762925	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	21762925	21762925	C	A	SNP	NCAM2	NM_004540	human	genbank	54_36p	1	reviewed	missense	c.1846	p.Q616K	1	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
MRPL39	54148	broad.mit.edu	36	21	25887033	25887033	+	Missense_Mutation	SNP	G	G	C	rs61735761	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	25887033	25887033	G	C	SNP	MRPL39	NM_080794	human	genbank	54_36p	-1	reviewed	missense	c.883	p.R295G	0.46	superfamily_ThrRS/AlaRS common domain	"HMMPfam_TGS,superfamily_ThrRS/AlaRS common domain"	-	no_errors
GABPA	2551	broad.mit.edu	36	21	26043237	26043237	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	26043237	26043237	T	C	SNP	GABPA	NM_002040	human	genbank	54_36p	1	validated	missense	c.242	p.L81S	1	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
CYYR1	116159	broad.mit.edu	36	21	26762717	26762718	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	26762717	26762718	GA	TT	DNP	CYYR1	NM_052954	human	genbank	54_36p	-1	validated	missense	c.439_438	p.P147T	1.000:1.000	NULL	NULL	-	no_errors
ADAMTS1	9510	broad.mit.edu	36	21	27138592	27138592	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	27138592	27138592	G	C	SNP	ADAMTS1	NM_006988	human	genbank	54_36p	-1	reviewed	missense	c.553	p.L185V	1	NULL	"PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTS1	9510	broad.mit.edu	36	21	27138624	27138624	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	27138624	27138624	C	T	SNP	ADAMTS1	NM_006988	human	genbank	54_36p	-1	reviewed	missense	c.521	p.G174E	0.01	NULL	"HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,HMMPfam_ADAM_spacer1,PatternScan_DISINTEGRIN_1,superfamily_SSF55486"	-	no_errors
ADAMTS5	11096	broad.mit.edu	36	21	27227130	27227130	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	27227130	27227130	A	G	SNP	ADAMTS5	NM_007038	human	genbank	54_36p	-1	reviewed	silent	c.1794	p.A598	0.04	"superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (zincins) catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
LTN1	26046	broad.mit.edu	36	21	29246387	29246387	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	29246387	29246387	C	T	SNP	RNF160	NM_015565	human	genbank	54_36p	-1	validated	missense	c.3310	p.D1104N	1	NULL	"superfamily_ARM repeat,superfamily_RING/U-box,HMMSmart_SM00744,HMMPfam_zf-C3HC4"	-	no_errors
GRIK1	2897	broad.mit.edu	36	21	29945421	29945421	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	21	29945421	29945421	C	T	SNP	GRIK1	NM_000830	human	genbank	54_36p	-1	reviewed	missense	c.842	p.R281Q	1	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
CLDN17	26285	broad.mit.edu	36	21	30460307	30460307	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	30460307	30460307	A	C	SNP	CLDN17	NM_012131	human	genbank	54_36p	-1	provisional	missense	c.500	p.L167R	0.96	HMMPfam_PMP22_Claudin	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
KRTAP26-1	388818	broad.mit.edu	36	21	30613710	30613710	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	30613710	30613710	C	T	SNP	KRTAP26-1	NM_203405	human	genbank	54_36p	-1	validated	missense	c.515	p.R172H	0	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
KRTAP27-1	643812	broad.mit.edu	36	21	30631406	30631406	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	30631406	30631406	A	G	SNP	KRTAP27-1	NM_001077711	human	genbank	54_36p	-1	provisional	missense	c.452	p.F151S	0.1	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
KRTAP13-1	140258	broad.mit.edu	36	21	30690461	30690461	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	30690461	30690461	G	T	SNP	KRTAP13-1	NM_181599	human	genbank	54_36p	1	validated	missense	c.186	p.E62D	0.06	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
KRTAP19-4	337971	broad.mit.edu	36	21	30791058	30791058	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	30791058	30791058	A	T	SNP	KRTAP19-4	NM_181610	human	genbank	54_36p	-1	provisional	nonsense	c.242	p.L81*	0	NULL	NULL	-	no_errors
KRTAP20-2	337976	broad.mit.edu	36	21	30929624	30929624	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	30929624	30929624	A	T	SNP	KRTAP20-2	NM_181616	human	genbank	54_36p	1	provisional	silent	c.171	p.G57	0.09	NULL	NULL	-	no_errors
HUNK	30811	broad.mit.edu	36	21	32290007	32290007	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	21	32290007	32290007	C	T	SNP	HUNK	NM_014586	human	genbank	54_36p	1	validated	missense	c.1361	p.S454F	0.97	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
SYNJ1	8867	broad.mit.edu	36	21	32925915	32925915	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	21	32925915	32925915	A	G	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	missense	c.3983	p.L1328P	1	NULL	"HMMPfam_Syja_N,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD"	-	no_errors
SYNJ1	8867	broad.mit.edu	36	21	32994229	32994229	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	21	32994229	32994229	A	G	SNP	SYNJ1	NM_003895	human	genbank	54_36p	-1	validated	missense	c.269	p.I90T	1	HMMPfam_Syja_N	"HMMSmart_SM00128,HMMPfam_Syja_N,HMMPfam_Exo_endo_phos,superfamily_DNase I-like,HMMPfam_DUF1866,superfamily_RNA-binding domain RBD"	-	no_errors
GCFC1	94104	broad.mit.edu	36	21	33039006	33039006	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	33039006	33039006	A	C	SNP	C21orf66	NM_016631	human	genbank	54_36p	-1	reviewed	missense	c.2158	p.S720A	1	HMMPfam_GCFC	HMMPfam_GCFC	-	no_errors
IFNAR2	3455	broad.mit.edu	36	21	33556887	33556887	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	33556887	33556887	A	T	SNP	IFNAR2	NM_000874	human	genbank	54_36p	1	reviewed	missense	c.992	p.D331V	0.05	NULL	"superfamily_Fibronectin type III,HMMPfam_Interfer-bind"	-	no_errors
IL10RB	3588	broad.mit.edu	36	21	33574013	33574013	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	33574013	33574013	T	C	SNP	IL10RB	NM_000628	human	genbank	54_36p	1	reviewed	missense	c.418	p.Y140H	0.15	"HMMSmart_FN3,superfamily_FN_III-like"	"HMMSmart_FN3,superfamily_FN_III-like"	-	no_errors
TMEM50B	757	broad.mit.edu	36	21	33749915	33749915	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	33749915	33749915	A	C	SNP	TMEM50B	NM_006134	human	genbank	54_36p	-1	validated	silent	c.420	p.L140	0.92	HMMPfam_UPF0220	HMMPfam_UPF0220	-	no_errors
ITSN1	6453	broad.mit.edu	36	21	34013029	34013029	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	34013029	34013029	G	C	SNP	ITSN1	NM_003024	human	genbank	54_36p	1	reviewed	missense	c.26	p.G9A	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
ITSN1	6453	broad.mit.edu	36	21	34130729	34130729	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	34130729	34130729	G	C	SNP	ITSN1	NM_003024	human	genbank	54_36p	1	reviewed	missense	c.3584	p.G1195A	1	"HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain"	###############################################################################################################################################################################################################################################################	-	no_errors
SLC5A3	6526	broad.mit.edu	36	21	34390965	34390965	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	34390965	34390965	C	A	SNP	SLC5A3	NM_006933	human	genbank	54_36p	1	validated	missense	c.1598	p.T533K	1	NULL	"HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2"	-	no_errors
CLIC6	54102	broad.mit.edu	36	21	35002123	35002123	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	21	35002123	35002123	A	T	SNP	CLIC6	NM_053277	human	genbank	54_36p	1	reviewed	missense	c.1496	p.D499V	1	superfamily_Thioredoxin-like	"superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain"	-	no_errors
DOPEY2	9980	broad.mit.edu	36	21	36531530	36531530	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	36531530	36531530	C	T	SNP	DOPEY2	NM_005128	human	genbank	54_36p	1	validated	missense	c.2723	p.T908M	0.89	NULL	HMMPfam_Dopey_N	-	no_errors
MORC3	23515	broad.mit.edu	36	21	36658405	36658405	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	36658405	36658405	C	G	SNP	MORC3	NM_015358	human	genbank	54_36p	1	reviewed	missense	c.1597	p.Q533E	0.4	NULL	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMPfam_zf-CW"	-	no_errors
HLCS	3141	broad.mit.edu	36	21	37231147	37231147	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	37231147	37231147	G	T	SNP	HLCS	NM_000411	human	genbank	54_36p	-1	validated	missense	c.468	p.N156K	0	NULL	"superfamily_SSF55681,HMMPfam_BPL_LipA_LipB,HMMPfam_BPL_C"	-	no_errors
KCNJ6	3763	broad.mit.edu	36	21	38008854	38008854	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	38008854	38008854	A	C	SNP	KCNJ6	NM_002240	human	genbank	54_36p	-1	reviewed	missense	c.476	p.V159G	1	"HMMPfam_IRK,superfamily_SSF81324"	"HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set"	-	no_errors
DSCAM	1826	broad.mit.edu	36	21	40379537	40379537	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	40379537	40379537	T	A	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	missense	c.3994	p.I1332F	1	"superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406"	"superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
DSCAM	1826	broad.mit.edu	36	21	40481721	40481721	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	40481721	40481721	C	A	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	nonsense	c.2617	p.E873*	1	"HMMSmart_SM00409,superfamily_Fibronectin type III,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
DSCAM	1826	broad.mit.edu	36	21	40605882	40605882	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	40605882	40605882	G	C	SNP	DSCAM	NM_001389	human	genbank	54_36p	-1	validated	silent	c.2058	p.V686	0.99	"HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin"	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
BACE2	25825	broad.mit.edu	36	21	41531370	41531370	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	41531370	41531370	G	T	SNP	BACE2	NM_012105	human	genbank	54_36p	1	reviewed	missense	c.462	p.W154C	1	"superfamily_Acid proteases,HMMPfam_Asp"	"superfamily_Acid proteases,HMMPfam_Asp,PatternScan_ASP_PROTEASE"	-	no_errors
MX2	4600	broad.mit.edu	36	21	41676280	41676280	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	41676280	41676280	G	T	SNP	MX2	NM_002463	human	genbank	54_36p	1	reviewed	missense	c.651	p.E217D	0.9	"HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N"	"HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_GED"	-	no_errors
MX1	4599	broad.mit.edu	36	21	41752421	41752421	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	41752421	41752421	C	A	SNP	MX1	NM_002462	human	genbank	54_36p	1	reviewed	missense	c.1855	p.L619I	1	"HMMPfam_GED,HMMSmart_GED"	"HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_GED"	-	no_errors
TMPRSS2	7113	broad.mit.edu	36	21	41791942	41791942	+	5'UTR	SNP	C	C	G	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	41791942	41791942	C	G	SNP	TMPRSS2	NM_005656	human	genbank	54_36p	-1	reviewed	5_prime_untranslated_region	c.-12	NULL	0.76	-	-	-	no_errors
PRDM15	63977	broad.mit.edu	36	21	42094832	42094832	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	42094832	42094832	C	T	SNP	PRDM15	NM_022115	human	genbank	54_36p	-1	validated	silent	c.4161	p.P1387	0.6	NULL	"HMMSmart_SET,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2"	-	no_errors
PRDM15	63977	broad.mit.edu	36	21	42103580	42103580	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	42103580	42103580	T	C	SNP	PRDM15	NM_022115	human	genbank	54_36p	-1	validated	missense	c.3749	p.E1250G	1	NULL	"HMMSmart_SET,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
PRDM15	63977	broad.mit.edu	36	21	42119469	42119469	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	42119469	42119469	T	C	SNP	PRDM15	NM_022115	human	genbank	54_36p	-1	validated	silent	c.2643	p.R881	0.96	superfamily_SSF57667	"HMMSmart_SET,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
C2CD2	25966	broad.mit.edu	36	21	42200838	42200838	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	42200838	42200838	C	T	SNP	C2CD2	NM_015500	human	genbank	54_36p	-1	validated	silent	c.1143	p.E381	1	superfamily_C2_CaLB	"superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2"	-	no_errors
UMODL1	89766	broad.mit.edu	36	21	42383593	42383593	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	42383593	42383593	C	T	SNP	UMODL1	NM_173568	human	genbank	54_36p	1	validated	missense	c.907	p.R303W	0	"HMMSmart_SM00179,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
ABCG1	9619	broad.mit.edu	36	21	42575502	42575502	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	42575502	42575502	G	A	SNP	ABCG1	NM_004915	human	genbank	54_36p	1	reviewed	missense	c.638	p.R213Q	0.82	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,HMMPfam_ABC2_membrane"	-	no_errors
TMPRSS3	64699	broad.mit.edu	36	21	42668909	42668909	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	42668909	42668909	G	A	SNP	TMPRSS3	NM_024022	human	genbank	54_36p	-1	reviewed	silent	c.1332	p.I444	0.97	"superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin"	###############################################################################################################################################################################################################################################################	-	no_errors
UBASH3A	53347	broad.mit.edu	36	21	42736496	42736496	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	42736496	42736496	C	T	SNP	UBASH3A	NM_018961	human	genbank	54_36p	1	validated	missense	c.1637	p.A546V	0.04	"superfamily_Phosphoglycerate mutase-like,HMMPfam_PGAM"	"superfamily_UBA-like,HMMPfam_UBA,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Phosphoglycerate mutase-like,HMMPfam_PGAM"	-	no_errors
RSPH1	89765	broad.mit.edu	36	21	42766027	42766027	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	42766027	42766027	T	C	SNP	RSPH1	NM_080860	human	genbank	54_36p	-1	validated	silent	c.900	p.E300	0.8	NULL	"HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698"	-	no_errors
WDR4	10785	broad.mit.edu	36	21	43143305	43143305	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	43143305	43143305	G	A	SNP	WDR4	NM_018669	human	genbank	54_36p	-1	reviewed	missense	c.1162	p.R388W	0.78	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
WDR4	10785	broad.mit.edu	36	21	43145494	43145494	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	43145494	43145494	C	A	SNP	WDR4	NM_018669	human	genbank	54_36p	-1	reviewed	nonsense	c.985	p.E329*	0.09	NULL	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40"	-	no_errors
NDUFV3	4731	broad.mit.edu	36	21	43196549	43196549	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	21	43196549	43196549	A	G	SNP	NDUFV3	NM_021075	human	genbank	54_36p	1	reviewed	missense	c.358	p.T120A	1	NULL	NULL	-	no_errors
NDUFV3	4731	broad.mit.edu	36	21	43202198	43202198	+	Nonstop_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	21	43202198	43202198	T	G	SNP	NDUFV3	NM_021075	human	genbank	54_36p	1	reviewed	nonstop	c.1420	p.*474G	1	NULL	NULL	-	no_errors
PKNOX1	5316	broad.mit.edu	36	21	43323267	43323267	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	43323267	43323267	A	G	SNP	PKNOX1	NM_004571	human	genbank	54_36p	1	validated	missense	c.1298	p.D433G	1	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox"	-	no_errors
CRYAA	1409	broad.mit.edu	36	21	43462450	43462450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	43462450	43462450	G	C	SNP	CRYAA	NM_000394	human	genbank	54_36p	1	reviewed	missense	c.172	p.D58H	1	superfamily_HSP20-like chaperones	"HMMPfam_Crystallin,superfamily_HSP20-like chaperones,HMMPfam_HSP20"	-	no_errors
RRP1B	23076	broad.mit.edu	36	21	43937631	43937632	+	Missense_Mutation	DNP	TG	TG	AA	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	43937631	43937632	TG	AA	DNP	RRP1B	NM_015056	human	genbank	54_36p	1	validated	missense	c.2216_2217	p.V739E	0.000:0.000	NULL	HMMPfam_Nop52	-	no_errors
PDXK	8566	broad.mit.edu	36	21	44000290	44000290	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	44000290	44000290	C	G	SNP	PDXK	NM_003681	human	genbank	54_36p	1	reviewed	missense	c.857	p.P286R	1	superfamily_Ribokinase-like	"superfamily_Ribokinase-like,HMMPfam_PfkB"	-	no_errors
AGPAT3	56894	broad.mit.edu	36	21	44213437	44213437	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	44213437	44213437	T	A	SNP	AGPAT3	NM_001037553	human	genbank	54_36p	1	reviewed	missense	c.359	p.V120D	1	"HMMPfam_Acyltransferase,HMMSmart_SM00563"	"HMMPfam_Acyltransferase,HMMSmart_SM00563"	-	no_errors
C21orf33	8209	broad.mit.edu	36	21	44380437	44380437	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	44380437	44380437	C	A	SNP	C21orf33	NM_004649	human	genbank	54_36p	1	validated	missense	c.262	p.H88N	1	"superfamily_Class I glutamine amidotransferase-like,HMMPfam_DJ-1_PfpI"	"superfamily_Class I glutamine amidotransferase-like,HMMPfam_DJ-1_PfpI"	-	no_errors
PFKL	5211	broad.mit.edu	36	21	44571033	44571033	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	44571033	44571033	A	G	SNP	PFKL	NM_002626	human	genbank	54_36p	1	reviewed	missense	c.2203	p.M735V	1	superfamily_Phosphofructokinase	"HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE"	-	no_errors
TRPM2	7226	broad.mit.edu	36	21	44623320	44623320	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	44623320	44623320	G	A	SNP	TRPM2	NM_003307	human	genbank	54_36p	1	reviewed	missense	c.1027	p.A343T	1	NULL	"HMMPfam_Ion_trans,PatternScan_CHITINASE_18,superfamily_Nudix"	-	no_errors
TRPM2	7226	broad.mit.edu	36	21	44635613	44635613	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	44635613	44635613	G	T	SNP	TRPM2	NM_003307	human	genbank	54_36p	1	reviewed	missense	c.1471	p.A491S	1	NULL	"PatternScan_CHITINASE_18,HMMPfam_Ion_trans,superfamily_Nudix"	-	no_errors
TRPM2	7226	broad.mit.edu	36	21	44683403	44683403	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	44683403	44683403	T	C	SNP	TRPM2	NM_003307	human	genbank	54_36p	1	reviewed	missense	c.4193	p.L1398P	0.92	superfamily_Nudix	"PatternScan_CHITINASE_18,HMMPfam_Ion_trans,superfamily_Nudix"	-	no_errors
C21orf29	54084	broad.mit.edu	36	21	44744211	44744211	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	44744211	44744211	G	T	SNP	C21orf29	NM_144991	human	genbank	54_36p	-1	provisional	missense	c.1893	p.S631R	0.99	NULL	"HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP"	-	no_errors
KRTAP10-9	386676	broad.mit.edu	36	21	44872235	44872235	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	44872235	44872235	G	A	SNP	KRTAP10-9	NM_198690	human	genbank	54_36p	1	validated	missense	c.719	p.R240K	0.97	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRTAP12-4	386684	broad.mit.edu	36	21	44898949	44898949	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	44898949	44898949	G	A	SNP	KRTAP12-4	NM_198698	human	genbank	54_36p	-1	provisional	missense	c.11	p.T4I	1	NULL	NULL	-	no_errors
ITGB2	3689	broad.mit.edu	36	21	45136247	45136247	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	45136247	45136247	C	T	SNP	ITGB2	NM_000211	human	genbank	54_36p	-1	reviewed	silent	c.1317	p.V439	0	"HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF69179"	###############################################################################################################################################################################################################################################################	-	no_errors
ITGB2	3689	broad.mit.edu	36	21	45143505	45143505	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	45143505	45143505	C	G	SNP	ITGB2	NM_000211	human	genbank	54_36p	-1	reviewed	missense	c.898	p.D300H	1	"HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300"	###############################################################################################################################################################################################################################################################	-	no_errors
COL18A1	80781	broad.mit.edu	36	21	45713004	45713004	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	45713004	45713004	T	C	SNP	COL18A1	NM_030582	human	genbank	54_36p	1	reviewed	missense	c.1067	p.L356P	1	"superfamily_ConA_like_lec_gl,HMMSmart_TSPN,HMMSmart_LamG"	"HMMPfam_DUF959,superfamily_ConA_like_lec_gl,HMMSmart_TSPN,HMMSmart_LamG,HMMPfam_Collagen,HMMPfam_Endostatin,superfamily_C-type_lectin_fold"	-	no_errors
COL6A2	1292	broad.mit.edu	36	21	46370240	46370240	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	46370240	46370240	G	C	SNP	COL6A2	NM_001849	human	genbank	54_36p	1	reviewed	missense	c.2083	p.E695Q	1	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA"	"superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Collagen"	-	no_errors
COL6A2	1292	broad.mit.edu	36	21	46376631	46376631	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	46376631	46376631	C	T	SNP	COL6A2	NM_001849	human	genbank	54_36p	1	reviewed	missense	c.2797	p.R933C	0	"HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like"	"HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like"	-	no_errors
MCM3AP	8888	broad.mit.edu	36	21	46501213	46501213	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	46501213	46501213	C	T	SNP	MCM3AP	NM_003906	human	genbank	54_36p	-1	reviewed	missense	c.3850	p.E1284K	0.89	NULL	"superfamily_SSF54928,HMMPfam_SAC3_GANP"	-	no_errors
PCNT	5116	broad.mit.edu	36	21	46590524	46590524	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	46590524	46590524	G	T	SNP	PCNT	NM_006031	human	genbank	54_36p	1	reviewed	missense	c.694	p.D232Y	0.01	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PCNT	5116	broad.mit.edu	36	21	46591329	46591329	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	46591329	46591329	G	T	SNP	PCNT	NM_006031	human	genbank	54_36p	1	reviewed	missense	c.965	p.G322V	0	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PCNT	5116	broad.mit.edu	36	21	46594105	46594105	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	46594105	46594105	G	C	SNP	PCNT	NM_006031	human	genbank	54_36p	1	reviewed	silent	c.1287	p.R429	0.05	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PCNT	5116	broad.mit.edu	36	21	46608232	46608232	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	46608232	46608232	A	C	SNP	PCNT	NM_006031	human	genbank	54_36p	1	reviewed	missense	c.2564	p.H855P	0.02	NULL	HMMPfam_PACT_coil_coil	-	no_errors
DIP2A	23181	broad.mit.edu	36	21	46784257	46784257	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	46784257	46784257	A	G	SNP	DIP2A	NM_015151	human	genbank	54_36p	1	reviewed	missense	c.1961	p.Q654R	1	superfamily_Acetyl-CoA synthetase-like	"HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding"	-	no_errors
DIP2A	23181	broad.mit.edu	36	21	46800336	46800336	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	21	46800336	46800336	A	C	SNP	DIP2A	NM_015151	human	genbank	54_36p	1	reviewed	missense	c.3402	p.K1134N	1	"HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like"	"HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like"	-	no_errors
CCT8L2	150160	broad.mit.edu	36	22	15452357	15452357	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	15452357	15452357	C	G	SNP	CCT8L2	NM_014406	human	genbank	54_36p	-1	validated	missense	c.1084	p.V362L	0.01	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like"	"superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like"	-	no_errors
CCT8L2	150160	broad.mit.edu	36	22	15452656	15452656	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	15452656	15452656	G	C	SNP	CCT8L2	NM_014406	human	genbank	54_36p	-1	validated	missense	c.785	p.S262C	0	"HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like"	"HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like"	-	no_errors
GAB4	128954	broad.mit.edu	36	22	15825730	15825730	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	15825730	15825730	A	T	SNP	GAB4	NM_001037814	human	genbank	54_36p	-1	provisional	missense	c.1402	p.S468T	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
IL17RA	23765	broad.mit.edu	36	22	15969845	15969845	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	15969845	15969845	T	G	SNP	IL17RA	NM_014339	human	genbank	54_36p	1	reviewed	missense	c.1736	p.V579G	0	NULL	HMMPfam_SEFIR	-	no_errors
CECR1	51816	broad.mit.edu	36	22	16064504	16064504	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	16064504	16064504	C	A	SNP	CECR1	NM_017424	human	genbank	54_36p	-1	reviewed	missense	c.702	p.E234D	1	"superfamily_SSF51556,HMMPfam_A_deaminase"	"HMMPfam_A_deaminase_N,superfamily_SSF51556,HMMPfam_A_deaminase"	-	no_errors
CECR1	51816	broad.mit.edu	36	22	16064625	16064625	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	16064625	16064625	T	G	SNP	CECR1	NM_017424	human	genbank	54_36p	-1	reviewed	missense	c.581	p.E194A	0.77	"HMMPfam_A_deaminase,superfamily_SSF51556"	"HMMPfam_A_deaminase,HMMPfam_A_deaminase_N,superfamily_SSF51556"	-	no_errors
BCL2L13	23786	broad.mit.edu	36	22	16589790	16589790	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	22	16589790	16589790	C	T	SNP	BCL2L13	NM_015367	human	genbank	54_36p	1	validated	silent	c.948	p.P316	0.03	NULL	"superfamily_Bcl-2 inhibitors of programmed cell death,HMMPfam_Bcl-2"	-	no_errors
BID	637	broad.mit.edu	36	22	16606601	16606601	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	16606601	16606601	C	G	SNP	BID	NM_197966	human	genbank	54_36p	-1	reviewed	missense	c.329	p.S110T	0	"superfamily_SSF56854,HMMPfam_BID"	"superfamily_SSF56854,HMMPfam_BID,PatternScan_BH3"	-	no_errors
MICAL3	57553	broad.mit.edu	36	22	16743984	16743984	+	Intron	SNP	T	T	C	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	16743984	16743984	T	C	SNP	MICAL3	ENST00000207726	human	ensembl	54_36p	-1	known	intronic	c.2325+3057	e16+3057	0	-	-	-	no_errors
USP18	11274	broad.mit.edu	36	22	17020540	17020540	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	17020540	17020540	A	G	SNP	USP18	NM_017414	human	genbank	54_36p	1	validated	missense	c.110	p.K37R	0.93	NULL	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
DGCR2	9993	broad.mit.edu	36	22	17406556	17406556	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	17406556	17406556	C	A	SNP	DGCR2	NM_005137	human	genbank	54_36p	-1	validated	missense	c.1475	p.R492L	0.01	NULL	"HMMPfam_Ldl_recept_a,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMSmart_VWC,PatternScan_VWFC_1"	-	no_errors
CLTCL1	8218	broad.mit.edu	36	22	17563895	17563895	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	17563895	17563895	C	T	SNP	CLTCL1	ENST00000263200	human	ensembl	54_36p	-1	known	nonsense	c.4073	p.W1358*	1	"superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299"	"superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin_propel,HMMPfam_Clathrin-link,superfamily_ARM repeat,HMMPfam_Clathrin,HMMSmart_SM00299"	-	no_errors
CLTCL1	8218	broad.mit.edu	36	22	17576458	17576458	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	17576458	17576458	T	A	SNP	CLTCL1	ENST00000263200	human	ensembl	54_36p	-1	known	missense	c.3416	p.E1139V	1	"HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat"	"HMMPfam_Clathrin,HMMSmart_SM00299,HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin-link,superfamily_ARM repeat"	-	no_errors
CLTCL1	8218	broad.mit.edu	36	22	17621616	17621616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	17621616	17621616	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	54_36p	-1	known	missense	c.385	p.H129Y	1	"HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain"	"HMMPfam_Clathrin,HMMSmart_SM00299,HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain,HMMPfam_Clathrin-link,superfamily_ARM repeat"	-	no_errors
HIRA	7290	broad.mit.edu	36	22	17720961	17720961	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	17720961	17720961	C	A	SNP	HIRA	NM_003325	human	genbank	54_36p	-1	reviewed	missense	c.2766	p.Q922H	1	HMMPfam_Hira	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_HIRA_B,HMMPfam_Hira"	-	no_errors
TXNRD2	10587	broad.mit.edu	36	22	18282746	18282746	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	18282746	18282746	G	C	SNP	TXNRD2	ENST00000400516	human	ensembl	54_36p	-1	known	nonsense	c.582	p.Y194*	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,PatternScan_PYRIDINE_REDOX_1,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,HMMPfam_Pyr_redox_dim"	-	no_errors
TXNRD2	10587	broad.mit.edu	36	22	18286508	18286508	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	18286508	18286508	G	A	SNP	TXNRD2	ENST00000400516	human	ensembl	54_36p	-1	known	silent	c.249	p.G83	1	"PatternScan_PYRIDINE_REDOX_1,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_Pyr_redox_dim,PatternScan_PYRIDINE_REDOX_1,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
COMT	1312	broad.mit.edu	36	22	18331093	18331093	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	22	18331093	18331093	G	A	SNP	COMT	NM_000754	human	genbank	54_36p	1	reviewed	silent	c.294	p.K98	0.99	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_3"	"superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_3"	-	no_errors
RANBP1	5902	broad.mit.edu	36	22	18489874	18489899	+	Frame_Shift_Del	DEL	CAAGGAGAAAGGGGCCATCCGCCTCC	-	CAAGGAGAAAGGGGCCATCCGCCTCC	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	CAAGGAGAAAGGGGCCATCCGCCTCC	CAAGGAGAAAGGGGCCATCCGCCTCC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	22	18489874	18489899	CAAGGAGAAAGGGGCCATCCGCCTCC	-	DEL	RANBP1	NM_002882	human	genbank	54_36p	1	reviewed	frame_shift_del	c.240_265	p.K81fs	0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.978:0.995	"superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1"	"superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1"	"(deletion:cds_exon[18489787,18489944])"	no_errors
RTN4R	65078	broad.mit.edu	36	22	18610012	18610012	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	18610012	18610012	G	T	SNP	RTN4R	NM_023004	human	genbank	54_36p	-1	reviewed	missense	c.644	p.A215D	0.03	superfamily_SSF52058	"HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT"	-	no_errors
ZNF74	7625	broad.mit.edu	36	22	19089703	19089703	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	19089703	19089703	G	A	SNP	ZNF74	NM_003426	human	genbank	54_36p	1	validated	missense	c.380	p.G127D	0	NULL	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
MED15	51586	broad.mit.edu	36	22	19250813	19250814	+	In_Frame_Ins	INS	-	CAG	-	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	19250813	19250814	-	CAG	INS	MED15	NM_001003891	human	genbank	54_36p	1	reviewed	in_frame_ins	c.750_751	p.254in_frame_insQ	0.997:0.998	NULL	HMMPfam_ARC105_Med_act	-	no_errors
PI4KA	5297	broad.mit.edu	36	22	19412084	19412084	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	22	19412084	19412084	C	T	SNP	PI4KA	NM_058004	human	genbank	54_36p	-1	reviewed	missense	c.4577	p.S1526N	1	"superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka"	"superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2"	-	no_errors
AIFM3	150209	broad.mit.edu	36	22	19659035	19659035	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	19659035	19659035	G	T	SNP	AIFM3	NM_144704	human	genbank	54_36p	1	provisional	missense	c.650	p.G217V	1	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2"	"HMMPfam_Rieske,superfamily_ISP domain,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain"	-	no_errors
LZTR1	8216	broad.mit.edu	36	22	19666711	19666712	+	Missense_Mutation	DNP	AG	AG	CA	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	19666711	19666712	AG	CA	DNP	LZTR1	NM_006767	human	genbank	54_36p	1	reviewed	missense	c.51_52	p.G18S	0.972:0.991	NULL	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612,HMMPfam_Kelch_2,superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_BTB"	-	no_errors
LZTR1	8216	broad.mit.edu	36	22	19674673	19674673	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	19674673	19674673	A	C	SNP	LZTR1	NM_006767	human	genbank	54_36p	1	reviewed	splice_site	c.652-2	e8-2	1	-	-	-	no_errors
SLC7A4	6545	broad.mit.edu	36	22	19714504	19714504	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	19714504	19714504	C	G	SNP	SLC7A4	NM_004173	human	genbank	54_36p	-1	validated	silent	c.1119	p.A373	1	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
HIC2	23119	broad.mit.edu	36	22	20130914	20130914	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	20130914	20130914	C	T	SNP	HIC2	NM_015094	human	genbank	54_36p	1	validated	missense	c.1730	p.T577M	1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
CCDC116	164592	broad.mit.edu	36	22	20318734	20318734	+	Missense_Mutation	SNP	G	G	C	rs35746656	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	20318734	20318734	G	C	SNP	CCDC116	NM_152612	human	genbank	54_36p	1	provisional	missense	c.496	p.A166P	0.03	NULL	HMMPfam_DUF411	-	no_errors
PPIL2	23759	broad.mit.edu	36	22	20369067	20369067	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	20369067	20369067	G	A	SNP	PPIL2	NM_148176	human	genbank	54_36p	1	reviewed	silent	c.579	p.P193	1	NULL	"superfamily_SSF57850,HMMSmart_Ubox,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1"	-	no_errors
PPM1F	9647	broad.mit.edu	36	22	20615650	20615650	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	20615650	20615650	C	A	SNP	PPM1F	NM_014634	human	genbank	54_36p	-1	reviewed	missense	c.761	p.G254V	1	"superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG"	"superfamily_PP2C-related,HMMSmart_PP2Cc,HMMPfam_PP2C,HMMSmart_PP2C_SIG,PatternScan_PP2C"	-	no_errors
TOP3B	8940	broad.mit.edu	36	22	20654768	20654768	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	20654768	20654768	G	T	SNP	TOP3B	NM_003935	human	genbank	54_36p	-1	reviewed	missense	c.395	p.A132D	1	"HMMSmart_SM00493,HMMPfam_Toprim,superfamily_Prokaryotic type I DNA topoisomerase"	"HMMSmart_SM00493,HMMPfam_Toprim,superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMPfam_Topoisom_bac,HMMSmart_SM00437,PatternScan_TOPOISOMERASE_I_PROK"	-	no_errors
ZNF280B	140883	broad.mit.edu	36	22	21172614	21172614	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	21172614	21172614	C	T	SNP	ZNF280B	NM_080764	human	genbank	54_36p	-1	reviewed	silent	c.1110	p.E370	0.99	superfamily_RING/U-box	"HMMSmart_SM00355,superfamily_RING/U-box,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZNF280B	140883	broad.mit.edu	36	22	21173712	21173712	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	21173712	21173712	T	C	SNP	ZNF280B	NM_080764	human	genbank	54_36p	-1	reviewed	silent	c.12	p.S4	0.31	NULL	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_RING/U-box"	-	no_errors
ZNF280A	129025	broad.mit.edu	36	22	21199652	21199652	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	21199652	21199652	C	T	SNP	ZNF280A	NM_080740	human	genbank	54_36p	-1	reviewed	missense	c.303	p.M101I	0	NULL	"HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
PRAME	23532	broad.mit.edu	36	22	21229242	21229243	+	Missense_Mutation	DNP	CT	CT	AA	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	21229242	21229243	CT	AA	DNP	PRAME	NM_006115	human	genbank	54_36p	-1	reviewed	missense	c.11_10	p.R4L	0.004:0.005	NULL	superfamily_RNI-like	-	no_errors
GGTLC2	91227	broad.mit.edu	36	22	21319329	21319329	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	21319329	21319329	A	T	SNP	GGTLC2	NM_199127	human	genbank	54_36p	1	validated	silent	c.282	p.S94	1	HMMPfam_G_glu_transpept	"HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE"	-	no_errors
RAB36	9609	broad.mit.edu	36	22	21822252	21822252	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	21822252	21822252	G	A	SNP	RAB36	NM_004914	human	genbank	54_36p	1	validated	nonsense	c.270	p.W90*	1	NULL	"HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
ZNF70	7621	broad.mit.edu	36	22	22416108	22416108	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	22	22416108	22416108	A	G	SNP	ZNF70	NM_021916	human	genbank	54_36p	-1	provisional	missense	c.1220	p.I407T	0.05	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZNF70	7621	broad.mit.edu	36	22	22416478	22416478	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	22416478	22416478	G	C	SNP	ZNF70	NM_021916	human	genbank	54_36p	-1	provisional	missense	c.850	p.L284V	0.04	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
SMARCB1	6598	broad.mit.edu	36	22	22497603	22497604	+	Splice_Site	DNP	GT	GT	AC	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	22497603	22497604	GT	AC	DNP	SMARCB1	NM_003073	human	genbank	54_36p	1	reviewed	splice_site	c.986+1_986+1	e7+1	1.000:1.000	-	-	-	no_errors
GSTT1	2952	broad.mit.edu	36	22	22706834	22706834	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	22706834	22706834	C	T	SNP	GSTT1	NM_000853	human	genbank	54_36p	-1	reviewed	silent	c.516	p.T172	0.35	"superfamily_GST_C_like,HMMPfam_GST_C"	"HMMPfam_GST_N,superfamily_Thiordxn-like_fd,superfamily_GST_C_like,HMMPfam_GST_C"	-	no_errors
SUSD2	56241	broad.mit.edu	36	22	22909157	22909158	+	Frame_Shift_Del	DEL	GA	-	GA	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	22	22909157	22909158	GA	-	DEL	SUSD2	NM_019601	human	genbank	54_36p	1	validated	frame_shift_del	c.209_210	p.G70fs	0.999:0.962	NULL	"HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,HMMSmart_AMOP,HMMPfam_AMOP,HMMSmart_VWD,HMMPfam_VWD,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP"	"(deletion:cds_exon[22909025,22909235])"	no_errors
GGT5	2687	broad.mit.edu	36	22	22952670	22952670	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	22952670	22952670	C	T	SNP	GGT5	NM_001099781	human	genbank	54_36p	-1	reviewed	missense	c.967	p.V323I	0.83	HMMPfam_G_glu_transpept	"HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE"	-	no_errors
SPECC1L	23384	broad.mit.edu	36	22	23048635	23048635	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	23048635	23048635	G	C	SNP	CYTSA	NM_015330	human	genbank	54_36p	1	validated	missense	c.1687	p.E563Q	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
PIWIL3	440822	broad.mit.edu	36	22	23445513	23445513	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	23445513	23445513	G	C	SNP	PIWIL3	NM_001008496	human	genbank	54_36p	-1	validated	missense	c.2575	p.L859V	1	"superfamily_RNaseH_fold,HMMPfam_Piwi"	"superfamily_SSF101690,HMMPfam_PAZ,superfamily_RNaseH_fold,HMMPfam_Piwi"	-	no_errors
PIWIL3	440822	broad.mit.edu	36	22	23480089	23480089	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	23480089	23480089	C	G	SNP	PIWIL3	NM_001008496	human	genbank	54_36p	-1	validated	missense	c.869	p.R290P	0.66	superfamily_SSF101690	"HMMPfam_PAZ,HMMPfam_Piwi,superfamily_RNaseH_fold,superfamily_SSF101690"	-	no_errors
TMEM211	255349	broad.mit.edu	36	22	23664229	23664229	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	23664229	23664229	C	G	SNP	TMEM211	NM_001001663	human	genbank	54_36p	-1	provisional	missense	c.14	p.G5A	1	NULL	HMMPfam_L_HGMIC_fpl	-	no_errors
ADRBK2	157	broad.mit.edu	36	22	24430154	24430154	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	22	24430154	24430154	C	T	SNP	ADRBK2	NM_005160	human	genbank	54_36p	1	reviewed	missense	c.1306	p.R436W	1	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
MYO18B	84700	broad.mit.edu	36	22	24506162	24506162	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	24506162	24506162	C	T	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	silent	c.2208	p.L736	0.99	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ"	-	no_errors
MYO18B	84700	broad.mit.edu	36	22	24573605	24573605	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	24573605	24573605	G	T	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	missense	c.3761	p.R1254L	1	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO18B	84700	broad.mit.edu	36	22	24672103	24672103	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	22	24672103	24672103	C	G	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	missense	c.5518	p.L1840V	1	NULL	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
MYO18B	84700	broad.mit.edu	36	22	24752607	24752607	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	24752607	24752607	C	A	SNP	MYO18B	NM_032608	human	genbank	54_36p	1	reviewed	missense	c.6667	p.P2223T	0	NULL	"HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
ASPHD2	57168	broad.mit.edu	36	22	25159725	25159725	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	25159725	25159725	C	T	SNP	ASPHD2	NM_020437	human	genbank	54_36p	1	validated	silent	c.66	p.T22	0.99	NULL	"HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197"	-	no_errors
CRYBB1	1414	broad.mit.edu	36	22	25327971	25327971	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	25327971	25327971	G	T	SNP	CRYBB1	NM_001887	human	genbank	54_36p	-1	reviewed	missense	c.447	p.H149Q	1	superfamily_G_crystallin_SF	"superfamily_G_crystallin_SF,HMMPfam_Crystall,HMMSmart_XTALbg"	-	no_errors
MN1	4330	broad.mit.edu	36	22	26523244	26523244	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	26523244	26523244	C	T	SNP	MN1	NM_002430	human	genbank	54_36p	-1	reviewed	silent	c.3288	p.P1096	0.96	NULL	NULL	-	no_errors
MN1	4330	broad.mit.edu	36	22	26524044	26524044	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	26524044	26524044	T	C	SNP	MN1	NM_002430	human	genbank	54_36p	-1	reviewed	missense	c.2488	p.T830A	1	NULL	NULL	-	no_errors
MN1	4330	broad.mit.edu	36	22	26526333	26526333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	26526333	26526333	G	A	SNP	MN1	NM_002430	human	genbank	54_36p	-1	reviewed	missense	c.199	p.P67S	1	NULL	NULL	-	no_errors
ZNRF3	84133	broad.mit.edu	36	22	27776883	27776883	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	27776883	27776883	C	A	SNP	ZNRF3	NM_032173	human	genbank	54_36p	1	validated	missense	c.2414	p.P805H	0.04	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
KREMEN1	83999	broad.mit.edu	36	22	27867934	27867934	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	27867934	27867934	C	T	SNP	KREMEN1	NM_001039570	human	genbank	54_36p	1	reviewed	missense	c.1262	p.S421F	1	NULL	"superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,HMMPfam_WSC,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB"	-	no_errors
EMID1	129080	broad.mit.edu	36	22	27957097	27957097	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	27957097	27957097	C	T	SNP	EMID1	NM_133455	human	genbank	54_36p	1	validated	missense	c.554	p.A185V	0.94	NULL	"HMMPfam_EMI,HMMPfam_Collagen"	-	no_errors
EWSR1	2130	broad.mit.edu	36	22	28022304	28022304	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	28022304	28022304	A	G	SNP	EWSR1	NM_005243	human	genbank	54_36p	1	reviewed	missense	c.1240	p.T414A	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1"	-	no_errors
GAS2L1	10634	broad.mit.edu	36	22	28037931	28037931	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	28037931	28037931	C	G	SNP	GAS2L1	ENST00000403764	human	ensembl	54_36p	1	known	missense	c.1490	p.P497R	0.07	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243,superfamily_Calponin-homology domain CH-domain"	-	no_errors
GAS2L1	10634	broad.mit.edu	36	22	28037990	28037990	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	28037990	28037990	T	A	SNP	GAS2L1	ENST00000333679	human	ensembl	54_36p	1	known	missense	c.1547	p.L516Q	1	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243,superfamily_Calponin-homology domain CH-domain"	-	no_errors
GAS2L1	10634	broad.mit.edu	36	22	28038242	28038242	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	28038242	28038242	C	G	SNP	GAS2L1	ENST00000333679	human	ensembl	54_36p	1	known	missense	c.1799	p.S600C	1	NULL	"HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243,superfamily_Calponin-homology domain CH-domain"	-	no_errors
NEFH	4744	broad.mit.edu	36	22	28209555	28209555	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	28209555	28209555	T	A	SNP	NEFH	NM_021076	human	genbank	54_36p	1	reviewed	missense	c.1075	p.S359T	0.59	HMMPfam_Filament	"HMMPfam_Filament,PatternScan_IF,HMMPfam_DUF1388"	-	no_errors
NF2	4771	broad.mit.edu	36	22	28384240	28384240	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	28384240	28384240	A	G	SNP	NF2	NM_000268	human	genbank	54_36p	1	reviewed	missense	c.662	p.Y221C	1	"HMMSmart_SM00295,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like"	"HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin tail domain"	-	no_errors
TBC1D10A	83874	broad.mit.edu	36	22	29030527	29030527	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	29030527	29030527	T	C	SNP	TBC1D10A	NM_031937	human	genbank	54_36p	-1	provisional	missense	c.302	p.H101R	1	superfamily_Ypt/Rab-GAP domain of gyp1p	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC"	-	no_errors
SF3A1	10291	broad.mit.edu	36	22	29061718	29061718	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	29061718	29061718	C	A	SNP	SF3A1	NM_005877	human	genbank	54_36p	-1	reviewed	missense	c.2131	p.V711L	1	superfamily_SSF54236	"superfamily_SSF109905,HMMSmart_SWAP,HMMPfam_Surp,superfamily_SSF54236,HMMPfam_ubiquitin,HMMSmart_UBQ"	-	no_errors
SF3A1	10291	broad.mit.edu	36	22	29068210	29068210	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	29068210	29068210	C	A	SNP	SF3A1	NM_005877	human	genbank	54_36p	-1	reviewed	missense	c.856	p.D286Y	1	NULL	"HMMPfam_Surp,HMMSmart_SWAP,HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF109905,superfamily_SSF54236"	-	no_errors
CCDC157	550631	broad.mit.edu	36	22	29092086	29092086	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	29092086	29092086	G	A	SNP	CCDC157	ENST00000405659	human	ensembl	54_36p	1	known	missense	c.97	p.G33R	1	NULL	superfamily_Prefoldin	-	no_errors
MTFP1	51537	broad.mit.edu	36	22	29154620	29154621	+	Missense_Mutation	DNP	GA	GA	AG	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	29154620	29154621	GA	AG	DNP	MTP18	NM_001003704	human	genbank	54_36p	1	validated	missense	c.367_368	p.D123S	0.001:0.001	NULL	HMMPfam_MTP18	-	no_errors
SLC35E4	339665	broad.mit.edu	36	22	29362922	29362922	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	29362922	29362922	T	C	SNP	SLC35E4	NM_001001479	human	genbank	54_36p	1	provisional	missense	c.485	p.L162P	1	superfamily_Multidrug resistance efflux transporter EmrE	"superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_TPT"	-	no_errors
OSBP2	23762	broad.mit.edu	36	22	29421221	29421221	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	29421221	29421221	G	C	SNP	OSBP2	NM_030758	human	genbank	54_36p	1	reviewed	missense	c.325	p.E109Q	0.01	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_Oxysterol_BP,PatternScan_OSBP"	-	no_errors
MORC2	22880	broad.mit.edu	36	22	29660166	29660166	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	29660166	29660166	G	A	SNP	MORC2	NM_014941	human	genbank	54_36p	-1	provisional	missense	c.2020	p.R674W	0.84	NULL	"superfamily_ATP_bd_ATPase,HMMPfam_zf-CW"	-	no_errors
SMTN	6525	broad.mit.edu	36	22	29817458	29817458	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	29817458	29817458	C	T	SNP	SMTN	NM_134270	human	genbank	54_36p	1	reviewed	silent	c.1449	p.N483	1	NULL	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033"	-	no_errors
LIMK2	3985	broad.mit.edu	36	22	29988653	29988653	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	29988653	29988653	C	T	SNP	LIMK2	NM_001031801	human	genbank	54_36p	1	reviewed	silent	c.667	p.L223	1	NULL	"HMMSmart_LIM,HMMPfam_LIM,superfamily_SSF57716,PatternScan_LIM_DOMAIN_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor"	-	no_errors
LIMK2	3985	broad.mit.edu	36	22	29992052	29992052	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	22	29992052	29992052	C	G	SNP	LIMK2	NM_001031801	human	genbank	54_36p	1	reviewed	missense	c.912	p.I304M	1	superfamily_Kinase_like	"HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF57716"	-	no_errors
PIK3IP1	113791	broad.mit.edu	36	22	30009151	30009151	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	30009151	30009151	C	G	SNP	PIK3IP1	NM_052880	human	genbank	54_36p	-1	validated	silent	c.711	p.V237	1	NULL	"superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1"	-	no_errors
EIF4ENIF1	56478	broad.mit.edu	36	22	30165896	30165896	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	30165896	30165896	G	A	SNP	EIF4ENIF1	NM_019843	human	genbank	54_36p	-1	reviewed	silent	c.2928	p.I976	1	NULL	HMMPfam_EIF4E-T	-	no_errors
EIF4ENIF1	56478	broad.mit.edu	36	22	30165994	30165994	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	30165994	30165994	G	A	SNP	EIF4ENIF1	NM_019843	human	genbank	54_36p	-1	reviewed	missense	c.2830	p.R944C	1	NULL	HMMPfam_EIF4E-T	-	no_errors
PISD	23761	broad.mit.edu	36	22	30345655	30345655	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	30345655	30345655	A	G	SNP	PISD	NM_014338	human	genbank	54_36p	-1	validated	silent	c.1071	p.N357	1	HMMPfam_PS_Dcarbxylase	HMMPfam_PS_Dcarbxylase	-	no_errors
DEPDC5	9681	broad.mit.edu	36	22	30492610	30492610	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	30492610	30492610	C	T	SNP	DEPDC5	NM_014662	human	genbank	54_36p	1	validated	nonsense	c.319	p.Q107*	1	NULL	"superfamily_Winged helix DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049"	-	no_errors
DEPDC5	9681	broad.mit.edu	36	22	30583538	30583538	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	30583538	30583538	A	G	SNP	DEPDC5	NM_014662	human	genbank	54_36p	1	validated	missense	c.3236	p.K1079R	1	NULL	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_Winged helix DNA-binding domain"	-	no_errors
C22orf42	150297	broad.mit.edu	36	22	30875766	30875766	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	30875766	30875766	G	C	SNP	C22orf42	NM_001010859	human	genbank	54_36p	-1	provisional	missense	c.656	p.A219G	0	NULL	NULL	-	no_errors
RFPL2	10739	broad.mit.edu	36	22	30916896	30916896	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	30916896	30916896	C	T	SNP	RFPL2	NM_006605	human	genbank	54_36p	-1	validated	missense	c.817	p.V273I	0	"HMMPfam_SPRY,HMMSmart_SM00449"	"superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449"	-	no_errors
ISX	91464	broad.mit.edu	36	22	33793246	33793246	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	33793246	33793246	G	T	SNP	ISX	NM_001008494	human	genbank	54_36p	1	validated	missense	c.166	p.G56C	0	superfamily_Homeodomain_like	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ISX	91464	broad.mit.edu	36	22	33811585	33811585	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	33811585	33811585	C	A	SNP	ISX	NM_001008494	human	genbank	54_36p	1	validated	missense	c.637	p.P213T	0	NULL	"HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1"	-	no_errors
TOM1	10043	broad.mit.edu	36	22	34073161	34073161	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	34073161	34073161	A	T	SNP	TOM1	NM_005488	human	genbank	54_36p	1	reviewed	nonsense	c.1438	p.K480*	0.98	NULL	"superfamily_ENTH_VHS,HMMPfam_VHS,HMMSmart_VHS,superfamily_SSF89009,HMMPfam_GAT"	-	no_errors
MCM5	4174	broad.mit.edu	36	22	34147330	34147332	+	In_Frame_Del	DEL	CGC	-	CGC	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	CGC	CGC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	22	34147330	34147332	CGC	-	DEL	MCM5	NM_006739	human	genbank	54_36p	1	reviewed	in_frame_del	c.1852_1854	p.R618in_frame_del	1.000:1.000:1.000	"HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"superfamily_Nucleic acid-binding proteins,HMMSmart_SM00350,HMMPfam_MCM,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_MCM_1"	"(deletion:cds_exon[34147311,34147453])"	no_errors
APOL1	8542	broad.mit.edu	36	22	34991401	34991401	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	34991401	34991401	C	T	SNP	APOL1	NM_145343	human	genbank	54_36p	1	reviewed	silent	c.621	p.L207	0.07	HMMPfam_ApoL	HMMPfam_ApoL	-	no_errors
MYH9	4627	broad.mit.edu	36	22	35026157	35026157	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	35026157	35026157	G	A	SNP	MYH9	NM_002473	human	genbank	54_36p	-1	reviewed	nonsense	c.2938	p.Q980*	0.77	superfamily_Prefoldin	"HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Regulator of G-protein signaling RGS"	-	no_errors
MYH9	4627	broad.mit.edu	36	22	35046799	35046799	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	35046799	35046799	C	G	SNP	MYH9	NM_002473	human	genbank	54_36p	-1	reviewed	missense	c.858	p.E286D	0.93	"HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases"	"HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Regulator of G-protein signaling RGS,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
NCF4	4689	broad.mit.edu	36	22	35601812	35601812	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	35601812	35601812	C	A	SNP	NCF4	NM_013416	human	genbank	54_36p	1	validated	missense	c.799	p.P267T	0	NULL	"superfamily_PX,HMMPfam_PX,HMMSmart_PX,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3"	-	no_errors
CSF2RB	1439	broad.mit.edu	36	22	35662613	35662613	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	35662613	35662613	G	A	SNP	CSF2RB	NM_000395	human	genbank	54_36p	1	reviewed	nonsense	c.1541	p.W514*	0	NULL	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1"	-	no_errors
CSF2RB	1439	broad.mit.edu	36	22	35664095	35664095	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	35664095	35664095	G	T	SNP	CSF2RB	NM_000395	human	genbank	54_36p	1	reviewed	missense	c.2299	p.V767L	0.88	NULL	"PatternScan_HEMATOPO_REC_S_F1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	-	no_errors
SSTR3	6753	broad.mit.edu	36	22	35933009	35933009	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	35933009	35933009	C	A	SNP	SSTR3	NM_001051	human	genbank	54_36p	-1	reviewed	silent	c.780	p.V260	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CYTH4	27128	broad.mit.edu	36	22	36035259	36035259	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	36035259	36035259	C	G	SNP	CYTH4	NM_013385	human	genbank	54_36p	1	reviewed	missense	c.757	p.L253V	1	superfamily_Sec7	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
GGA1	26088	broad.mit.edu	36	22	36351895	36351895	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	36351895	36351895	G	A	SNP	GGA1	NM_013365	human	genbank	54_36p	1	reviewed	missense	c.1086	p.M362I	1	NULL	"HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,superfamily_GAT-like domain,HMMPfam_GAT,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809"	-	no_errors
TRIOBP	11078	broad.mit.edu	36	22	36449344	36449344	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	36449344	36449344	T	C	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.835	p.S279P	0.1	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
TRIOBP	11078	broad.mit.edu	36	22	36450946	36450946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	36450946	36450946	G	A	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.2437	p.D813N	0	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
TRIOBP	11078	broad.mit.edu	36	22	36451808	36451808	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	36451808	36451808	C	T	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.3299	p.S1100F	0.95	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
TRIOBP	11078	broad.mit.edu	36	22	36451967	36451967	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	36451967	36451967	C	G	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.3458	p.S1153C	0.22	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
TRIOBP	11078	broad.mit.edu	36	22	36461253	36461253	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	36461253	36461253	C	G	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.4964	p.P1655R	0.73	NULL	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
TRIOBP	11078	broad.mit.edu	36	22	36481114	36481114	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	36481114	36481114	G	C	SNP	TRIOBP	NM_001039141	human	genbank	54_36p	1	reviewed	missense	c.5548	p.V1850L	0.99	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
EIF3L	51386	broad.mit.edu	36	22	36596276	36596276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	36596276	36596276	C	A	SNP	EIF3L	NM_016091	human	genbank	54_36p	1	validated	missense	c.727	p.Q243K	1	HMMPfam_Paf67	HMMPfam_Paf67	-	no_errors
MICALL1	85377	broad.mit.edu	36	22	36650624	36650624	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	36650624	36650624	G	T	SNP	MICALL1	NM_033386	human	genbank	54_36p	1	validated	nonsense	c.1036	p.E346*	0.7	NULL	"HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology,superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
BAIAP2L2	80115	broad.mit.edu	36	22	36813120	36813121	+	In_Frame_Ins	INS	-	CATGGAGGT	-	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	22	36813120	36813121	-	CATGGAGGT	INS	BAIAP2L2	NM_025045	human	genbank	54_36p	-1	validated	in_frame_ins	c.1216_1215	p.405in_frame_insTSM	0.020:0.025	superfamily_SH3-domain	"HMMPfam_IMD,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2"	-	no_errors
KCNJ4	3761	broad.mit.edu	36	22	37153490	37153490	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	37153490	37153490	G	A	SNP	KCNJ4	NM_004981	human	genbank	54_36p	-1	reviewed	silent	c.594	p.G198	1	"HMMPfam_IRK,superfamily_Ig_E-set"	"superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set"	-	no_errors
GTPBP1	9567	broad.mit.edu	36	22	37441971	37441971	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	37441971	37441971	G	C	SNP	GTPBP1	NM_004286	human	genbank	54_36p	1	reviewed	missense	c.418	p.A140P	0.99	NULL	"superfamily_SSF52540,HMMPfam_GTP_EFTU,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,superfamily_Elong_init_C,HMMPfam_GTP_EFTU_D3"	-	no_errors
SUN2	25777	broad.mit.edu	36	22	37475757	37475757	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	37475757	37475757	T	G	SNP	UNC84B	NM_015374	human	genbank	54_36p	-1	validated	missense	c.574	p.T192P	1	NULL	HMMPfam_Sad1_UNC	-	no_errors
APOBEC3A	200315	broad.mit.edu	36	22	37683664	37683664	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	37683664	37683664	G	A	SNP	APOBEC3A	NM_145699	human	genbank	54_36p	1	validated	missense	c.22	p.G8R	0	NULL	"HMMPfam_APOBEC_N,superfamily_Cytidine_deaminase-like,PatternScan_CYT_DCMP_DEAMINASES,HMMPfam_APOBEC_C"	-	no_errors
CACNA1I	8911	broad.mit.edu	36	22	38384912	38384912	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	38384912	38384912	T	G	SNP	CACNA1I	NM_021096	human	genbank	54_36p	1	reviewed	silent	c.2175	p.G725	0.56	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
ENTHD1	150350	broad.mit.edu	36	22	38613688	38613688	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	38613688	38613688	C	T	SNP	ENTHD1	NM_152512	human	genbank	54_36p	-1	provisional	missense	c.11	p.R4K	1	superfamily_ENTH/VHS domain	"superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273"	-	no_errors
ENTHD1	150350	broad.mit.edu	36	22	38613693	38613693	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	38613693	38613693	C	T	SNP	ENTHD1	NM_152512	human	genbank	54_36p	-1	provisional	silent	c.6	p.A2	1	superfamily_ENTH/VHS domain	"HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273"	-	no_errors
TNRC6B	23112	broad.mit.edu	36	22	38991429	38991429	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	38991429	38991429	C	G	SNP	TNRC6B	NM_015088	human	genbank	54_36p	1	validated	missense	c.1249	p.R417G	1	NULL	"HMMPfam_Ago_hook,superfamily_SSF54928"	-	no_errors
ADSL	158	broad.mit.edu	36	22	39075945	39075945	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	39075945	39075945	T	C	SNP	ADSL	NM_000026	human	genbank	54_36p	1	reviewed	missense	c.317	p.I106T	1	"superfamily_L-aspartase-like,HMMPfam_Lyase_1"	"superfamily_L-aspartase-like,HMMPfam_Lyase_1,PatternScan_FUMARATE_LYASES,HMMPfam_ADSL_C"	-	no_errors
MKL1	57591	broad.mit.edu	36	22	39144836	39144836	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	39144836	39144836	G	C	SNP	MKL1	NM_020831	human	genbank	54_36p	-1	validated	missense	c.1552	p.L518V	0.32	NULL	"HMMSmart_RPEL,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP"	-	no_errors
MKL1	57591	broad.mit.edu	36	22	39155704	39155704	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	39155704	39155704	C	T	SNP	MKL1	NM_020831	human	genbank	54_36p	-1	validated	silent	c.153	p.E51	1	NULL	"HMMPfam_SAP,HMMSmart_SAP,HMMSmart_RPEL,superfamily_SSF68906"	-	no_errors
MKL1	57591	broad.mit.edu	36	22	39157379	39157379	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	39157379	39157379	G	C	SNP	MKL1	NM_020831	human	genbank	54_36p	-1	validated	missense	c.115	p.L39V	1	HMMSmart_RPEL	"HMMPfam_SAP,HMMSmart_SAP,HMMSmart_RPEL,superfamily_SSF68906"	-	no_errors
EP300	2033	broad.mit.edu	36	22	39894458	39894458	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	39894458	39894458	C	T	SNP	EP300	NM_001429	human	genbank	54_36p	1	reviewed	nonsense	c.3934	p.R1312*	1	HMMPfam_DUF906	###############################################################################################################################################################################################################################################################	-	no_errors
L3MBTL2	83746	broad.mit.edu	36	22	39939923	39939923	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	39939923	39939923	T	G	SNP	L3MBTL2	NM_031488	human	genbank	54_36p	1	validated	missense	c.343	p.S115A	1	NULL	"superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT"	-	no_errors
L3MBTL2	83746	broad.mit.edu	36	22	39953805	39953805	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	39953805	39953805	A	C	SNP	L3MBTL2	NM_031488	human	genbank	54_36p	1	validated	missense	c.1874	p.Q625P	1	NULL	"HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT"	-	no_errors
ZC3H7B	23264	broad.mit.edu	36	22	40056026	40056026	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	40056026	40056026	A	T	SNP	ZC3H7B	NM_017590	human	genbank	54_36p	1	reviewed	silent	c.498	p.R166	1	NULL	"superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF90229,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMSmart_ZnF_C2H2"	-	no_errors
ZC3H7B	23264	broad.mit.edu	36	22	40082310	40082310	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	40082310	40082310	A	G	SNP	ZC3H7B	NM_017590	human	genbank	54_36p	1	reviewed	missense	c.2401	p.T801A	1	NULL	"HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,HMMPfam_TPR_1,HMMSmart_ZnF_C2H2,superfamily_SSF48452,superfamily_SSF90229"	-	no_errors
ACO2	50	broad.mit.edu	36	22	40252281	40252281	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	40252281	40252281	G	A	SNP	ACO2	NM_001098	human	genbank	54_36p	1	reviewed	missense	c.1831	p.D611N	1	"superfamily_Aconitase/3IPM_dehydase_swvl,HMMPfam_Aconitase_C"	"superfamily_Aconitase_N,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase/3IPM_dehydase_swvl,HMMPfam_Aconitase_C"	-	no_errors
CCDC134	79879	broad.mit.edu	36	22	40535924	40535924	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	40535924	40535924	G	C	SNP	CCDC134	NM_024821	human	genbank	54_36p	1	validated	missense	c.199	p.D67H	1	NULL	NULL	-	no_errors
CCDC134	79879	broad.mit.edu	36	22	40536209	40536209	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	40536209	40536209	G	A	SNP	CCDC134	NM_024821	human	genbank	54_36p	1	validated	missense	c.278	p.G93E	1	NULL	NULL	-	no_errors
WBP2NL	164684	broad.mit.edu	36	22	40724784	40724784	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	40724784	40724784	A	T	SNP	WBP2NL	NM_152613	human	genbank	54_36p	1	validated	missense	c.16	p.S6C	0.99	NULL	HMMPfam_WWbp	-	no_errors
TCF20	6942	broad.mit.edu	36	22	40937616	40937616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	40937616	40937616	G	A	SNP	TCF20	NM_005650	human	genbank	54_36p	-1	reviewed	missense	c.3640	p.P1214S	0.6	NULL	HMMSmart_SM00249	-	no_errors
TCF20	6942	broad.mit.edu	36	22	40939690	40939690	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	40939690	40939690	G	C	SNP	TCF20	NM_005650	human	genbank	54_36p	-1	reviewed	silent	c.1566	p.G522	1	NULL	HMMSmart_SM00249	-	no_errors
TCF20	6942	broad.mit.edu	36	22	40940142	40940142	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	40940142	40940142	G	T	SNP	TCF20	NM_005650	human	genbank	54_36p	-1	reviewed	missense	c.1114	p.P372T	1	NULL	HMMSmart_SM00249	-	no_errors
TTLL12	23170	broad.mit.edu	36	22	41900461	41900461	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	41900461	41900461	A	C	SNP	TTLL12	NM_015140	human	genbank	54_36p	-1	provisional	missense	c.1022	p.F341C	1	NULL	HMMPfam_TTL	-	no_errors
TTLL12	23170	broad.mit.edu	36	22	41902291	41902291	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	41902291	41902291	T	G	SNP	TTLL12	NM_015140	human	genbank	54_36p	-1	provisional	missense	c.896	p.H299P	0	NULL	HMMPfam_TTL	-	no_errors
EFCAB6	64800	broad.mit.edu	36	22	42327310	42327310	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	22	42327310	42327310	G	A	SNP	EFCAB6	NM_022785	human	genbank	54_36p	-1	validated	nonsense	c.2848	p.Q950*	0.94	NULL	"superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_DUF1880"	-	no_errors
EFCAB6	64800	broad.mit.edu	36	22	42343043	42343043	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	42343043	42343043	G	C	SNP	EFCAB6	NM_022785	human	genbank	54_36p	-1	validated	missense	c.2558	p.S853C	0.92	superfamily_EF-hand	"HMMSmart_SM00054,HMMPfam_DUF1880,PatternScan_EF_HAND_1,superfamily_EF-hand"	-	no_errors
EFCAB6	64800	broad.mit.edu	36	22	42399519	42399519	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	42399519	42399519	C	A	SNP	EFCAB6	NM_022785	human	genbank	54_36p	-1	validated	splice_site	c.1420-1	e12-1	0.01	-	-	-	no_errors
SULT4A1	25830	broad.mit.edu	36	22	42589571	42589572	+	Missense_Mutation	DNP	GG	GG	CT	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	42589571	42589572	GG	CT	DNP	SULT4A1	NM_014351	human	genbank	54_36p	-1	reviewed	missense	c.25_24	p.P9A	1.000:1.000	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1"	-	no_errors
SAMM50	25813	broad.mit.edu	36	22	42703319	42703319	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	22	42703319	42703319	G	A	SNP	SAMM50	NM_015380	human	genbank	54_36p	1	validated	missense	c.700	p.E234K	1	HMMPfam_Bac_surface_Ag	HMMPfam_Bac_surface_Ag	-	no_errors
LDOC1L	84247	broad.mit.edu	36	22	43271643	43271643	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	43271643	43271643	A	T	SNP	LDOC1L	NM_032287	human	genbank	54_36p	-1	validated	missense	c.458	p.I153N	1	NULL	NULL	-	no_errors
LDOC1L	100131299	broad.mit.edu	36	22	43272056	43272056	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	43272056	43272056	T	C	SNP	LOC100131299	XM_001717099	human	genbank	54_36p	1	model	missense	c.922	p.C308R	0	NULL	NULL	-	no_errors
ATXN10	25814	broad.mit.edu	36	22	44467611	44467611	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	44467611	44467611	C	G	SNP	ATXN10	NM_013236	human	genbank	54_36p	1	validated	missense	c.380	p.S127C	0.24	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_Atx10homo_assoc"	-	no_errors
WNT7B	7477	broad.mit.edu	36	22	44697494	44697494	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	44697494	44697494	G	T	SNP	WNT7B	NM_058238	human	genbank	54_36p	-1	reviewed	missense	c.956	p.T319N	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
WNT7B	7477	broad.mit.edu	36	22	44705751	44705751	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	44705751	44705751	G	C	SNP	WNT7B	NM_058238	human	genbank	54_36p	-1	reviewed	missense	c.461	p.A154G	1	"HMMPfam_wnt,HMMSmart_SM00097"	"HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1"	-	no_errors
GTSE1	51512	broad.mit.edu	36	22	45088481	45088481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	45088481	45088481	C	T	SNP	GTSE1	NM_016426	human	genbank	54_36p	1	reviewed	missense	c.901	p.P301S	0	NULL	NULL	-	no_errors
CELSR1	9620	broad.mit.edu	36	22	45168795	45168795	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	45168795	45168795	A	C	SNP	CELSR1	NM_014246	human	genbank	54_36p	-1	reviewed	missense	c.5872	p.W1958G	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
TBC1D22A	25771	broad.mit.edu	36	22	45886159	45886160	+	Missense_Mutation	DNP	TT	TT	GC	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	45886159	45886160	TT	GC	DNP	TBC1D22A	NM_014346	human	genbank	54_36p	1	provisional	missense	c.1421_1422	p.F474C	1.000:1.000	superfamily_Ypt/Rab-GAP domain of gyp1p	"PatternScan_AA_TRNA_LIGASE_I,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
ZBED4	9889	broad.mit.edu	36	22	48666474	48666474	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	48666474	48666474	C	G	SNP	ZBED4	NM_014838	human	genbank	54_36p	1	validated	missense	c.3160	p.P1054A	0.83	NULL	"HMMSmart_SM00614,HMMPfam_zf-BED,HMMPfam_hATC"	-	no_errors
CRELD2	79174	broad.mit.edu	36	22	48705208	48705208	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	48705208	48705208	T	A	SNP	CRELD2	NM_024324	human	genbank	54_36p	1	validated	silent	c.1008	p.A336	0.07	NULL	"superfamily_Growth factor receptor domain,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMSmart_SM00261,PatternScan_EGF_CA,HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL"	-	no_errors
TTLL8	164714	broad.mit.edu	36	22	48812614	48812614	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	48812614	48812614	C	A	SNP	TTLL8	NM_001080447	human	genbank	54_36p	-1	provisional	silent	c.1335	p.V445	0	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
TTLL8	164714	broad.mit.edu	36	22	48813919	48813919	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	48813919	48813919	C	A	SNP	TTLL8	NM_001080447	human	genbank	54_36p	-1	provisional	silent	c.1122	p.V374	1	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
TTLL8	164714	broad.mit.edu	36	22	48825840	48825840	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	48825840	48825840	G	T	SNP	TTLL8	NM_001080447	human	genbank	54_36p	-1	provisional	missense	c.614	p.A205D	0.02	NULL	"HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like"	-	no_errors
MOV10L1	54456	broad.mit.edu	36	22	48888779	48888779	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	48888779	48888779	C	G	SNP	MOV10L1	NM_018995	human	genbank	54_36p	1	reviewed	missense	c.530	p.P177R	1	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MOV10L1	54456	broad.mit.edu	36	22	48897863	48897863	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	48897863	48897863	G	A	SNP	MOV10L1	NM_018995	human	genbank	54_36p	1	reviewed	silent	c.1410	p.A470	0	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TUBGCP6	85378	broad.mit.edu	36	22	49000210	49000210	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	49000210	49000210	G	A	SNP	TUBGCP6	NM_020461	human	genbank	54_36p	-1	reviewed	silent	c.4305	p.Y1435	0.38	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
TUBGCP6	85378	broad.mit.edu	36	22	49001579	49001579	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	49001579	49001579	G	A	SNP	TUBGCP6	NM_020461	human	genbank	54_36p	-1	reviewed	silent	c.3336	p.N1112	0.03	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
TUBGCP6	85378	broad.mit.edu	36	22	49004795	49004796	+	Missense_Mutation	DNP	CC	CC	TG	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49004795	49004796	CC	TG	DNP	TUBGCP6	NM_020461	human	genbank	54_36p	-1	reviewed	missense	c.2172_2171	p.R724T	1.000:1.000	HMMPfam_Spc97_Spc98	HMMPfam_Spc97_Spc98	-	no_errors
MAPK12	6300	broad.mit.edu	36	22	49035898	49035898	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49035898	49035898	C	T	SNP	MAPK12	NM_002969	human	genbank	54_36p	-1	reviewed	silent	c.879	p.V293	0.99	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase"	"PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK"	-	no_errors
PLXNB2	23654	broad.mit.edu	36	22	49062153	49062153	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49062153	49062153	C	T	SNP	PLXNB2	NM_012401	human	genbank	54_36p	-1	validated	missense	c.3491	p.R1164Q	0.95	NULL	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_Ig_E-set,HMMSmart_IPT,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	-	no_errors
PLXNB2	23654	broad.mit.edu	36	22	49066380	49066380	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	22	49066380	49066380	C	T	SNP	PLXNB2	NM_012401	human	genbank	54_36p	-1	validated	silent	c.2064	p.Q688	1	NULL	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold"	-	no_errors
PLXNB2	23654	broad.mit.edu	36	22	49066760	49066760	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	49066760	49066760	G	T	SNP	PLXNB2	NM_012401	human	genbank	54_36p	-1	validated	missense	c.1846	p.R616S	1	HMMSmart_PSI	"HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,superfamily_Rho_GAP,HMMPfam_Plexin_cytopl,superfamily_Ig_E-set,superfamily_Plexin-like_fold"	-	no_errors
PPP6R2	9701	broad.mit.edu	36	22	49204738	49204738	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	22	49204738	49204738	C	T	SNP	SAPS2	NM_014678	human	genbank	54_36p	1	validated	silent	c.826	p.L276	0.97	HMMPfam_SAPS	HMMPfam_SAPS	-	no_errors
PPP6R2	9701	broad.mit.edu	36	22	49216601	49216601	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49216601	49216601	C	T	SNP	SAPS2	NM_014678	human	genbank	54_36p	1	validated	missense	c.1259	p.P420L	0	HMMPfam_SAPS	HMMPfam_SAPS	-	no_errors
SBF1	6305	broad.mit.edu	36	22	49246525	49246525	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49246525	49246525	G	T	SNP	SBF1	NM_002972	human	genbank	54_36p	-1	validated	missense	c.2896	p.R966S	1	"HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like"	"HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
SBF1	6305	broad.mit.edu	36	22	49247919	49247919	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49247919	49247919	C	A	SNP	SBF1	NM_002972	human	genbank	54_36p	-1	validated	missense	c.2062	p.G688W	1	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
SBF1	6305	broad.mit.edu	36	22	49249688	49249688	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49249688	49249688	C	G	SNP	SBF1	NM_002972	human	genbank	54_36p	-1	validated	missense	c.1685	p.R562P	1	NULL	"HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II"	-	no_errors
NCAPH2	29781	broad.mit.edu	36	22	49307644	49307644	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	49307644	49307644	G	T	SNP	NCAPH2	NM_152299	human	genbank	54_36p	1	validated	nonsense	c.1240	p.E414*	0	HMMPfam_DUF1032	HMMPfam_DUF1032	-	no_errors
TYMP	1890	broad.mit.edu	36	22	49313004	49313004	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	22	49313004	49313004	C	T	SNP	TYMP	NM_001953	human	genbank	54_36p	-1	reviewed	silent	c.525	p.V175	0.33	"superfamily_Glyco_trans_3,HMMPfam_Glycos_transf_3"	"superfamily_Glyco_trans_3,HMMPfam_Glycos_trans_3N,HMMPfam_Glycos_transf_3,PatternScan_THYMID_PHOSPHORYLASE,superfamily_PYNP_C,HMMPfam_PYNP_C"	-	no_errors
CHKB	1120	broad.mit.edu	36	22	49364798	49364799	+	Nonsense_Mutation	DNP	CA	CA	AC	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49364798	49364799	CA	AC	DNP	CHKB	NM_005198	human	genbank	54_36p	-1	reviewed	nonsense	c.1036_1035	p.YAL345*	1.000:1.000	superfamily_Protein kinase-like (PK-like)	"superfamily_Protein kinase-like (PK-like),HMMPfam_Choline_kinase"	-	no_errors
CHKB	1120	broad.mit.edu	36	22	49366845	49366845	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49366845	49366845	G	T	SNP	CHKB	NM_005198	human	genbank	54_36p	-1	reviewed	silent	c.451	p.R151	1	"HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)"	"HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)"	-	no_errors
CHKB	1120	broad.mit.edu	36	22	49367155	49367155	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	22	49367155	49367155	G	A	SNP	CHKB	NM_005198	human	genbank	54_36p	-1	reviewed	silent	c.336	p.G112	0.8	"HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)"	"HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)"	-	no_errors
GYG2	8908	broad.mit.edu	36	X	2784571	2784571	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	2784571	2784571	A	T	SNP	GYG2	NM_003918	human	genbank	54_36p	1	validated	missense	c.613	p.R205W	1	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	"superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8"	-	no_errors
MXRA5	25878	broad.mit.edu	36	X	3238653	3238653	+	Missense_Mutation	SNP	G	G	C	rs1726208	"by-cluster,by-frequency,by-1000genomes"	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	3238653	3238653	G	C	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.7591	p.L2531V	0.62	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409"	"HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set"	-	no_errors
MXRA5	25878	broad.mit.edu	36	X	3251097	3251097	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	X	3251097	3251097	G	C	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.2629	p.P877A	0.02	NULL	"HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
MXRA5	25878	broad.mit.edu	36	X	3252751	3252751	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	3252751	3252751	C	A	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.975	p.E325D	1	NULL	"HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
MXRA5	25878	broad.mit.edu	36	X	3271695	3271695	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	3271695	3271695	G	C	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.180	p.I60M	1	"HMMSmart_SM00369,superfamily_L domain-like"	"HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like"	-	no_errors
NLGN4X	57502	broad.mit.edu	36	X	5821458	5821458	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	5821458	5821458	G	A	SNP	NLGN4X	NM_020742	human	genbank	54_36p	-1	reviewed	silent	c.1851	p.D617	1	NULL	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2"	-	no_errors
NLGN4X	57502	broad.mit.edu	36	X	5831627	5831627	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	5831627	5831627	G	T	SNP	NLGN4X	NM_020742	human	genbank	54_36p	-1	reviewed	missense	c.1092	p.N364K	1	"HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases"	"HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases"	-	no_errors
KAL1	3730	broad.mit.edu	36	X	8513413	8513413	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	8513413	8513413	T	A	SNP	KAL1	NM_000216	human	genbank	54_36p	-1	reviewed	missense	c.751	p.T251S	0.96	"superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	"superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3"	-	no_errors
GPR143	4935	broad.mit.edu	36	X	9671619	9671619	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	9671619	9671619	C	A	SNP	GPR143	NM_000273	human	genbank	54_36p	-1	reviewed	silent	c.813	p.L271	1	HMMPfam_Ocular_alb	HMMPfam_Ocular_alb	-	no_errors
SHROOM2	357	broad.mit.edu	36	X	9860829	9860829	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	9860829	9860829	C	T	SNP	SHROOM2	NM_001649	human	genbank	54_36p	1	reviewed	missense	c.3506	p.S1169L	0.42	NULL	"superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2"	-	no_errors
WWC3	55841	broad.mit.edu	36	X	10022214	10022214	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	10022214	10022214	G	A	SNP	WWC3	NM_015691	human	genbank	54_36p	1	validated	missense	c.550	p.V184I	0.17	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
WWC3	55841	broad.mit.edu	36	X	10044547	10044547	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	10044547	10044547	G	T	SNP	WWC3	NM_015691	human	genbank	54_36p	1	validated	missense	c.1064	p.S355I	1	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
WWC3	55841	broad.mit.edu	36	X	10045308	10045308	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	10045308	10045308	C	G	SNP	WWC3	NM_015691	human	genbank	54_36p	1	validated	silent	c.1209	p.P403	0.01	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
WWC3	55841	broad.mit.edu	36	X	10056631	10056631	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	10056631	10056631	C	T	SNP	WWC3	NM_015691	human	genbank	54_36p	1	validated	missense	c.2315	p.A772V	1	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
MID1	4281	broad.mit.edu	36	X	10397842	10397842	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	10397842	10397842	C	G	SNP	MID1	NM_000381	human	genbank	54_36p	-1	reviewed	missense	c.1180	p.A394P	1	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	###############################################################################################################################################################################################################################################################	-	no_errors
FRMPD4	9758	broad.mit.edu	36	X	12622478	12622478	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	12622478	12622478	A	G	SNP	FRMPD4	NM_014728	human	genbank	54_36p	1	validated	missense	c.917	p.E306G	1	"HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	"PatternScan_WW_DOMAIN_1,PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M"	-	no_errors
FRMPD4	9758	broad.mit.edu	36	X	12644682	12644682	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	12644682	12644682	C	T	SNP	FRMPD4	NM_014728	human	genbank	54_36p	1	validated	missense	c.2183	p.A728V	0.53	NULL	"PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41"	-	no_errors
FRMPD4	9758	broad.mit.edu	36	X	12645760	12645760	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	12645760	12645760	C	A	SNP	FRMPD4	NM_014728	human	genbank	54_36p	1	validated	missense	c.2894	p.P965Q	0.89	NULL	"PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41"	-	no_errors
RAB9A	9367	broad.mit.edu	36	X	13637199	13637199	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	13637199	13637199	C	T	SNP	RAB9A	NM_004251	human	genbank	54_36p	1	provisional	missense	c.413	p.A138V	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176"	-	no_errors
GPM6B	2824	broad.mit.edu	36	X	13702662	13702662	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	13702662	13702662	C	A	SNP	GPM6B	NM_001001996	human	genbank	54_36p	-1	validated	silent	c.840	p.L280	1	HMMPfam_Myelin_PLP	"HMMPfam_Myelin_PLP,PatternScan_MYELIN_PLP_1,HMMSmart_PLP,PatternScan_MYELIN_PLP_2"	-	no_errors
PIGA	5277	broad.mit.edu	36	X	15259426	15259426	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	15259426	15259426	C	T	SNP	PIGA	NM_002641	human	genbank	54_36p	-1	reviewed	missense	c.548	p.C183Y	1	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	"superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_PIGA,HMMPfam_Glycos_transf_1"	-	no_errors
FIGF	2277	broad.mit.edu	36	X	15286135	15286135	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	15286135	15286135	G	A	SNP	FIGF	NM_004469	human	genbank	54_36p	-1	reviewed	missense	c.403	p.P135S	1	"superfamily_Cystine-knot cytokines,HMMSmart_SM00141,HMMPfam_PDGF,PatternScan_PDGF_1"	"superfamily_Cystine-knot cytokines,HMMSmart_SM00141,HMMPfam_PDGF,PatternScan_PDGF_1"	-	no_errors
PIR	8544	broad.mit.edu	36	X	15407826	15407826	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	15407826	15407826	T	C	SNP	PIR	NM_001018109	human	genbank	54_36p	-1	reviewed	missense	c.136	p.K46E	1	"superfamily_RmlC_like_cupin,HMMPfam_Pirin"	"superfamily_RmlC_like_cupin,HMMPfam_Pirin,HMMPfam_Pirin_C"	-	no_errors
BMX	660	broad.mit.edu	36	X	15458069	15458069	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	15458069	15458069	A	C	SNP	BMX	NM_001721	human	genbank	54_36p	1	validated	missense	c.937	p.K313Q	1	"superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2"	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR"	-	no_errors
ACE2	59272	broad.mit.edu	36	X	15503803	15503803	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	15503803	15503803	A	G	SNP	ACE2	NM_021804	human	genbank	54_36p	-1	reviewed	missense	c.1349	p.L450P	1	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ACE2	59272	broad.mit.edu	36	X	15506329	15506329	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	15506329	15506329	G	A	SNP	ACE2	NM_021804	human	genbank	54_36p	-1	reviewed	silent	c.1101	p.D367	1	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (zincins) catalytic domain"	-	no_errors
ZRSR2	8233	broad.mit.edu	36	X	15751193	15751193	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	15751193	15751193	C	G	SNP	ZRSR2	NM_005089	human	genbank	54_36p	1	reviewed	silent	c.1356	p.R452	0.01	NULL	"HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928,HMMSmart_RRM"	-	no_errors
GRPR	2925	broad.mit.edu	36	X	16078664	16078664	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	X	16078664	16078664	T	A	SNP	GRPR	NM_005314	human	genbank	54_36p	1	reviewed	missense	c.729	p.N243K	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
CTPS2	56474	broad.mit.edu	36	X	16606455	16606455	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	16606455	16606455	C	T	SNP	CTPS2	NM_019857	human	genbank	54_36p	-1	reviewed	missense	c.1045	p.E349K	0.71	"superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase"	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_CTP_synth_N,superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase"	-	no_errors
RBBP7	5931	broad.mit.edu	36	X	16780622	16780622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	16780622	16780622	G	A	SNP	RBBP7	NM_002893	human	genbank	54_36p	-1	reviewed	silent	c.936	p.F312	0.98	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1"	-	no_errors
RBBP7	5931	broad.mit.edu	36	X	16780669	16780669	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	16780669	16780669	C	A	SNP	RBBP7	NM_002893	human	genbank	54_36p	-1	reviewed	missense	c.889	p.V297L	1	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	"HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
REPS2	9185	broad.mit.edu	36	X	17063308	17063308	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	17063308	17063308	G	T	SNP	REPS2	NM_004726	human	genbank	54_36p	1	reviewed	missense	c.1666	p.V556L	0	NULL	"superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1"	-	no_errors
SCML1	6322	broad.mit.edu	36	X	17678068	17678068	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	17678068	17678068	G	A	SNP	SCML1	NM_001037540	human	genbank	54_36p	1	validated	missense	c.437	p.R146H	0	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1"	-	no_errors
BEND2	139105	broad.mit.edu	36	X	18131659	18131659	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	18131659	18131659	G	A	SNP	BEND2	NM_153346	human	genbank	54_36p	-1	validated	nonsense	c.790	p.R264*	0	NULL	HMMPfam_BEN	-	no_errors
RS1	6247	broad.mit.edu	36	X	18570134	18570134	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	18570134	18570134	A	C	SNP	RS1	NM_000330	human	genbank	54_36p	-1	reviewed	missense	c.586	p.S196A	0.97	"HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C"	"PatternScan_FA58C_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1"	-	no_errors
RS1	6247	broad.mit.edu	36	X	18572495	18572495	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	18572495	18572495	G	C	SNP	RS1	NM_000330	human	genbank	54_36p	-1	reviewed	nonsense	c.498	p.Y166*	1	"HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like"	"HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Gal_bind_like"	-	no_errors
CDKL5	6792	broad.mit.edu	36	X	18574089	18574089	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	18574089	18574089	C	A	SNP	CDKL5	NM_001037343	human	genbank	54_36p	1	reviewed	missense	c.2755	p.P919T	0.02	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CDKL5	6792	broad.mit.edu	36	X	18578623	18578623	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	18578623	18578623	C	A	SNP	CDKL5	NM_001037343	human	genbank	54_36p	1	reviewed	silent	c.2970	p.T990	0	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
PHKA2	5256	broad.mit.edu	36	X	18879229	18879248	+	Frame_Shift_Del	DEL	GTGCCACAGGTGGCGGTGTT	-	GTGCCACAGGTGGCGGTGTT	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	GTGCCACAGGTGGCGGTGTT	GTGCCACAGGTGGCGGTGTT	-	-	GTGCCACAGGTGGCGGTGTT	GTGCCACAGGTGGCGGTGTT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	18879229	18879248	GTGCCACAGGTGGCGGTGTT	-	DEL	PHKA2	NM_000292	human	genbank	54_36p	-1	validated	frame_shift_del	c.368_349	p.N117fs	0.999:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.887:0.401:0.996:1.000:1.000:1.000:1.000	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	"(deletion:cds_exon[18879143,18879311])"	no_errors
PDHA1	5160	broad.mit.edu	36	X	19277365	19277365	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	19277365	19277365	G	A	SNP	PDHA1	NM_000284	human	genbank	54_36p	1	validated	silent	c.72	p.L24	0.99	NULL	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh"	-	no_errors
MAP3K15	389840	broad.mit.edu	36	X	19290873	19290873	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	19290873	19290873	C	G	SNP	MAP3K15	NM_001001671	human	genbank	54_36p	-1	validated	missense	c.2008	p.V670L	0.99	NULL	"HMMSmart_S_TKc,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM_homology"	-	no_errors
CXorf23	256643	broad.mit.edu	36	X	19893693	19893693	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	19893693	19893693	T	C	SNP	CXorf23	NM_198279	human	genbank	54_36p	-1	validated	missense	c.664	p.K222E	0.92	NULL	NULL	-	no_errors
EIF1AX	1964	broad.mit.edu	36	X	20066663	20066663	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	20066663	20066663	T	G	SNP	EIF1AX	NM_001412	human	genbank	54_36p	-1	reviewed	splice_site	c.17-2	e2-2	1	-	-	-	no_errors
RPS6KA3	6197	broad.mit.edu	36	X	20104380	20104380	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	20104380	20104380	T	C	SNP	RPS6KA3	NM_004586	human	genbank	54_36p	-1	reviewed	silent	c.1011	p.R337	1	"superfamily_Kinase_like,HMMSmart_S_TK_X"	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C"	-	no_errors
KLHL34	257240	broad.mit.edu	36	X	21584171	21584171	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	21584171	21584171	G	C	SNP	KLHL34	NM_153270	human	genbank	54_36p	-1	provisional	missense	c.1657	p.R553G	1	"superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch"	"superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1"	-	no_errors
SMS	6611	broad.mit.edu	36	X	21905271	21905271	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	21905271	21905271	T	C	SNP	SMS	NM_004595	human	genbank	54_36p	1	reviewed	silent	c.501	p.D167	1	"HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,PatternScan_SPERMIDINE_SYNTHASE_1"	-	no_errors
SMS	6611	broad.mit.edu	36	X	21906034	21906034	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	21906034	21906034	A	T	SNP	SMS	NM_004595	human	genbank	54_36p	1	reviewed	missense	c.541	p.I181F	1	"HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	"HMMPfam_Spermine_synth,PatternScan_SPERMIDINE_SYNTHASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
PTCHD1	139411	broad.mit.edu	36	X	23321698	23321698	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	23321698	23321698	G	T	SNP	PTCHD1	NM_173495	human	genbank	54_36p	1	validated	silent	c.2142	p.S714	0.99	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	"HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain"	-	no_errors
ACOT9	23597	broad.mit.edu	36	X	23633874	23633874	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	23633874	23633874	C	A	SNP	ACOT9	NM_001037171	human	genbank	54_36p	-1	validated	missense	c.865	p.V289F	0.95	NULL	superfamily_Thioesterase/thiol ester dehydrase-isomerase	-	no_errors
FAM48B2	170067	broad.mit.edu	36	X	24239592	24239592	+	3'Flank	SNP	A	A	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	24239592	24239592	A	T	SNP	ENSG00000222188	ENST00000410256	human	ensembl	54_36p	1	novel	3_prime_flanking_region	c.*24877	NULL	0	-	-	-	no_errors
FAM48B2	170067	broad.mit.edu	36	X	24239593	24239593	+	3'Flank	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	24239593	24239593	A	C	SNP	ENSG00000222188	ENST00000410256	human	ensembl	54_36p	1	novel	3_prime_flanking_region	c.*24878	NULL	0	-	-	-	no_errors
FAM48B1	100130302	broad.mit.edu	36	X	24292685	24292685	+	3'Flank	SNP	T	T	C	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	24292685	24292685	T	C	SNP	ENSG00000216877	ENST00000401462	human	ensembl	54_36p	1	novel	3_prime_flanking_region	c.*933	NULL	0	-	-	-	no_coding_region:pseudogene
POLA1	5422	broad.mit.edu	36	X	24737953	24737953	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	24737953	24737953	A	G	SNP	POLA1	NM_016937	human	genbank	54_36p	1	validated	silent	c.2964	p.K988	1	"HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B"	"superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_SSF56672,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B,HMMPfam_zf-DNA_Pol,superfamily_SSF90234"	-	no_errors
MAGEB6	158809	broad.mit.edu	36	X	26122021	26122021	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	26122021	26122021	G	A	SNP	MAGEB6	NM_173523	human	genbank	54_36p	1	reviewed	missense	c.137	p.R46H	0	NULL	HMMPfam_MAGE	-	no_errors
MAGEB6	158809	broad.mit.edu	36	X	26122301	26122301	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	26122301	26122301	C	A	SNP	MAGEB6	NM_173523	human	genbank	54_36p	1	reviewed	silent	c.417	p.S139	0	NULL	HMMPfam_MAGE	-	no_errors
DCAF8L1	139425	broad.mit.edu	36	X	27908693	27908693	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	27908693	27908693	C	G	SNP	WDR42B	NM_001017930	human	genbank	54_36p	-1	provisional	missense	c.680	p.R227P	0.19	"superfamily_WD40_like,HMMSmart_WD40"	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	-	no_errors
MAGEB2	4113	broad.mit.edu	36	X	30146685	30146685	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	30146685	30146685	C	T	SNP	MAGEB2	NM_002364	human	genbank	54_36p	1	reviewed	missense	c.67	p.R23W	0	NULL	HMMPfam_MAGE	-	no_errors
MAGEB4	4115	broad.mit.edu	36	X	30170960	30170960	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	30170960	30170960	A	C	SNP	MAGEB4	NM_002367	human	genbank	54_36p	1	reviewed	missense	c.787	p.S263R	0.02	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGEB1	4112	broad.mit.edu	36	X	30179302	30179302	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	30179302	30179302	C	T	SNP	MAGEB1	NM_002363	human	genbank	54_36p	1	reviewed	silent	c.771	p.Y257	0.01	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
DMD	1756	broad.mit.edu	36	X	31075420	31075420	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	31075420	31075420	G	T	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	missense	c.10690	p.L3564I	1	superfamily_Prefoldin	###############################################################################################################################################################################################################################################################	-	no_errors
DMD	1756	broad.mit.edu	36	X	31075451	31075451	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	31075451	31075451	G	T	SNP	DMD	NM_004006	human	genbank	54_36p	-1	reviewed	silent	c.10659	p.P3553	1	superfamily_Prefoldin	###############################################################################################################################################################################################################################################################	-	no_errors
FAM47A	158724	broad.mit.edu	36	X	34058180	34058180	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	34058180	34058180	G	T	SNP	FAM47A	NM_203408	human	genbank	54_36p	-1	predicted	missense	c.2137	p.P713T	0.89	NULL	NULL	-	no_errors
FAM47A	158724	broad.mit.edu	36	X	34058268	34058268	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	34058268	34058268	C	T	SNP	FAM47A	NM_203408	human	genbank	54_36p	-1	predicted	silent	c.2049	p.S683	0	NULL	NULL	-	no_errors
FAM47A	158724	broad.mit.edu	36	X	34059579	34059614	+	In_Frame_Del	DEL	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	-	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	34059579	34059614	ATGGGACACTCCAGTCTCTGGAGGCTCCGGGCGGAG	-	DEL	FAM47A	NM_203408	human	genbank	54_36p	-1	predicted	in_frame_del	c.738_703	p.LRPEPPETGVSH235in_frame_del	0.639:0.651:0.670:0.695:0.718:0.741:0.752:0.778:0.803:0.806:0.815:0.810:0.804:0.802:0.778:0.778:0.760:0.706:0.665:0.663:0.636:0.539:0.518:0.506:0.497:0.492:0.495:0.475:0.455:0.445:0.437:0.395:0.388:0.384:0.387:0.389	NULL	NULL	"(deletion:cds_exon[34057941,34060316])"	no_errors
FAM47A	158724	broad.mit.edu	36	X	34059642	34059642	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	34059642	34059642	C	T	SNP	FAM47A	NM_203408	human	genbank	54_36p	-1	predicted	silent	c.675	p.P225	0.76	NULL	NULL	-	no_errors
FAM47A	158724	broad.mit.edu	36	X	34060102	34060102	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	34060102	34060102	C	T	SNP	FAM47A	NM_203408	human	genbank	54_36p	-1	predicted	missense	c.215	p.R72H	0	NULL	NULL	-	no_errors
FAM47B	170062	broad.mit.edu	36	X	34871741	34871741	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	34871741	34871741	G	A	SNP	FAM47B	NM_152631	human	genbank	54_36p	1	predicted	missense	c.872	p.R291H	0.02	NULL	NULL	-	no_errors
MAGEB16	139604	broad.mit.edu	36	X	35730701	35730701	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	35730701	35730701	T	G	SNP	MAGEB16	NM_001099921	human	genbank	54_36p	1	provisional	missense	c.467	p.L156R	0.02	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
FAM47C	442444	broad.mit.edu	36	X	36936626	36936626	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	36936626	36936626	C	T	SNP	FAM47C	NM_001013736	human	genbank	54_36p	1	provisional	silent	c.222	p.D74	0	NULL	NULL	-	no_errors
FAM47C	442444	broad.mit.edu	36	X	36938588	36938588	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	36938588	36938588	G	A	SNP	FAM47C	NM_001013736	human	genbank	54_36p	1	provisional	silent	c.2184	p.P728	0.23	NULL	NULL	-	no_errors
FAM47C	442444	broad.mit.edu	36	X	36938862	36938862	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	36938862	36938862	G	A	SNP	FAM47C	NM_001013736	human	genbank	54_36p	1	provisional	missense	c.2458	p.G820R	0.03	NULL	NULL	-	no_errors
RPGR	6103	broad.mit.edu	36	X	38067608	38067608	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	38067608	38067608	C	A	SNP	RPGR	NM_001034853	human	genbank	54_36p	-1	reviewed	missense	c.142	p.A48S	1	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2"	"superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1"	-	no_errors
TSPAN7	7102	broad.mit.edu	36	X	38415583	38415583	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	38415583	38415583	T	A	SNP	TSPAN7	NM_004615	human	genbank	54_36p	1	reviewed	missense	c.280	p.F94I	1	HMMPfam_Tetraspannin	"HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin"	-	no_errors
BCOR	54880	broad.mit.edu	36	X	39801518	39801518	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	39801518	39801518	C	A	SNP	BCOR	NM_017745	human	genbank	54_36p	-1	reviewed	nonsense	c.4327	p.E1443*	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
CXorf38	159013	broad.mit.edu	36	X	40381332	40381332	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	40381332	40381332	C	G	SNP	CXorf38	NM_144970	human	genbank	54_36p	-1	predicted	missense	c.492	p.E164D	1	NULL	NULL	-	no_errors
USP9X	8239	broad.mit.edu	36	X	40960499	40960499	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	40960499	40960499	A	G	SNP	USP9X	NM_001039590	human	genbank	54_36p	1	reviewed	missense	c.5735	p.D1912G	1	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
CASK	8573	broad.mit.edu	36	X	41275294	41275294	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	41275294	41275294	G	A	SNP	CASK	NM_003688	human	genbank	54_36p	-1	validated	silent	c.2415	p.S805	1	"superfamily_SSF52540,HMMSmart_GuKc,HMMPfam_Guanylate_kin"	###############################################################################################################################################################################################################################################################	-	no_errors
GPR34	2857	broad.mit.edu	36	X	41440897	41440897	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	41440897	41440897	C	G	SNP	GPR34	NM_001097579	human	genbank	54_36p	1	validated	missense	c.1067	p.T356S	1	superfamily_Family A G protein-coupled receptor-like	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR82	27197	broad.mit.edu	36	X	41471553	41471553	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	41471553	41471553	A	C	SNP	GPR82	NM_080817	human	genbank	54_36p	1	provisional	missense	c.330	p.L110F	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
EFHC2	80258	broad.mit.edu	36	X	43922724	43922724	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	43922724	43922724	G	T	SNP	EFHC2	NM_025184	human	genbank	54_36p	-1	validated	missense	c.1782	p.N594K	0	superfamily_EF-hand	"HMMSmart_SM00676,HMMPfam_DUF1126,superfamily_EF-hand"	-	no_errors
NDUFB11	54539	broad.mit.edu	36	X	46888878	46888878	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	46888878	46888878	G	T	SNP	NDUFB11	NM_019056	human	genbank	54_36p	-1	validated	missense	c.145	p.P49T	0	HMMPfam_ESSS	HMMPfam_ESSS	-	no_errors
UBA1	7317	broad.mit.edu	36	X	46950616	46950616	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	46950616	46950616	C	G	SNP	UBA1	NM_003334	human	genbank	54_36p	1	reviewed	silent	c.1767	p.V589	1	"superfamily_MoeB,HMMPfam_ThiF"	"superfamily_MoeB,HMMPfam_ThiF,PatternScan_UBIQUITIN_ACTIVAT_1,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C"	-	no_errors
ZNF41	7592	broad.mit.edu	36	X	47192031	47192031	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	47192031	47192031	A	G	SNP	ZNF41	NM_007130	human	genbank	54_36p	-1	reviewed	silent	c.2082	p.G694	0.1	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ARAF	369	broad.mit.edu	36	X	47315352	47315352	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	47315352	47315352	C	T	SNP	ARAF	NM_001654	human	genbank	54_36p	1	validated	silent	c.1683	p.P561	0.99	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_SSF54236,HMMPfam_RBD,HMMSmart_RBD,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
ELK1	2002	broad.mit.edu	36	X	47383596	47383596	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	47383596	47383596	C	A	SNP	ELK1	NM_005229	human	genbank	54_36p	-1	reviewed	missense	c.296	p.C99F	0.36	superfamily_Winged helix DNA-binding domain	"superfamily_Winged helix DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
SLC38A5	92745	broad.mit.edu	36	X	48203075	48203075	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48203075	48203075	G	C	SNP	SLC38A5	NM_033518	human	genbank	54_36p	-1	validated	missense	c.1200	p.I400M	1	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
TBC1D25	4943	broad.mit.edu	36	X	48302238	48302238	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1328-01A-01W	TCGA-25-1328-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48302238	48302238	T	C	SNP	TBC1D25	NM_002536	human	genbank	54_36p	1	validated	missense	c.398	p.L133P	1	NULL	"superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164"	-	no_errors
RBM3	5935	broad.mit.edu	36	X	48319938	48319938	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48319938	48319938	T	G	SNP	RBM3	NM_006743	human	genbank	54_36p	1	reviewed	splice_site	c.413+2	e4+2	0.88	-	-	-	no_errors
WAS	7454	broad.mit.edu	36	X	48432310	48432310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48432310	48432310	C	T	SNP	WAS	NM_000377	human	genbank	54_36p	1	reviewed	missense	c.1249	p.P417S	0.92	NULL	"superfamily_SSF50729,HMMPfam_WH1,HMMSmart_WH1,HMMPfam_PBD,HMMSmart_PBD,superfamily_WASP_C,HMMPfam_WH2,HMMSmart_WH2"	-	no_errors
HDAC6	10013	broad.mit.edu	36	X	48549720	48549720	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	48549720	48549720	C	T	SNP	HDAC6	NM_006044	human	genbank	54_36p	1	reviewed	silent	c.439	p.L147	1	"superfamily_SSF52768,HMMPfam_Hist_deacetyl"	"superfamily_SSF52768,HMMPfam_Hist_deacetyl,HMMSmart_ZnF_UBP,HMMPfam_zf-UBP"	-	no_errors
HDAC6	10013	broad.mit.edu	36	X	48559520	48559520	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48559520	48559520	T	C	SNP	HDAC6	NM_006044	human	genbank	54_36p	1	reviewed	silent	c.1522	p.L508	0.15	"HMMPfam_Hist_deacetyl,superfamily_SSF52768"	"HMMPfam_Hist_deacetyl,HMMPfam_zf-UBP,HMMSmart_ZnF_UBP,superfamily_SSF52768"	-	no_errors
PQBP1	10084	broad.mit.edu	36	X	48643523	48643524	+	Splice_Site	DNP	GT	GT	CA	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	48643523	48643524	GT	CA	DNP	PQBP1	NM_001032381	human	genbank	54_36p	1	validated	splice_site	c.179+1_179+1	e2+1	1.000:1.000	-	-	-	no_errors
PQBP1	10084	broad.mit.edu	36	X	48644547	48644547	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	48644547	48644547	A	G	SNP	PQBP1	NM_001032381	human	genbank	54_36p	1	validated	missense	c.386	p.D129G	0.94	NULL	"superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW"	-	no_errors
KCND1	3750	broad.mit.edu	36	X	48704872	48704872	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48704872	48704872	C	T	SNP	KCND1	NM_004979	human	genbank	54_36p	-1	reviewed	missense	c.1858	p.G620S	0	NULL	"superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans"	-	no_errors
GRIPAP1	56850	broad.mit.edu	36	X	48740838	48740838	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48740838	48740838	G	T	SNP	GRIPAP1	NM_020137	human	genbank	54_36p	-1	validated	missense	c.65	p.T22K	1	NULL	superfamily_Prefoldin	-	no_errors
TFE3	7030	broad.mit.edu	36	X	48777971	48777971	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48777971	48777971	G	A	SNP	TFE3	NM_006521	human	genbank	54_36p	-1	provisional	silent	c.1089	p.N363	1	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	"superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH"	-	no_errors
TFE3	7030	broad.mit.edu	36	X	48782717	48782717	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	48782717	48782717	C	T	SNP	TFE3	NM_006521	human	genbank	54_36p	-1	provisional	silent	c.729	p.A243	1	NULL	"HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic"	-	no_errors
CCDC120	90060	broad.mit.edu	36	X	48812186	48812186	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	48812186	48812186	G	A	SNP	CCDC120	NM_033626	human	genbank	54_36p	1	provisional	missense	c.1487	p.S496N	0.3	NULL	NULL	-	no_errors
WDR45	11152	broad.mit.edu	36	X	48820247	48820247	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48820247	48820247	G	T	SNP	WDR45	NM_007075	human	genbank	54_36p	-1	reviewed	nonsense	c.629	p.S210*	1	"superfamily_WD40_like,HMMSmart_WD40"	"HMMSmart_WD40,superfamily_WD40_like"	-	no_errors
GPKOW	27238	broad.mit.edu	36	X	48863011	48863011	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48863011	48863011	G	T	SNP	GPKOW	NM_015698	human	genbank	54_36p	-1	provisional	missense	c.557	p.T186N	1	"HMMSmart_G_patch,HMMPfam_G-patch"	"HMMSmart_G_patch,HMMPfam_G-patch,HMMSmart_KOW,HMMPfam_KOW"	-	no_errors
GPKOW	27238	broad.mit.edu	36	X	48865947	48865947	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48865947	48865947	C	T	SNP	GPKOW	NM_015698	human	genbank	54_36p	-1	provisional	silent	c.300	p.V100	0.82	NULL	"HMMPfam_G-patch,HMMSmart_G_patch,HMMPfam_KOW,HMMSmart_KOW"	-	no_errors
SYP	6855	broad.mit.edu	36	X	48936733	48936733	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	48936733	48936733	C	G	SNP	SYP	NM_003179	human	genbank	54_36p	-1	reviewed	missense	c.555	p.Q185H	0.07	HMMPfam_MARVEL	"HMMPfam_MARVEL,PatternScan_SYNAPTOP"	-	no_errors
CACNA1F	778	broad.mit.edu	36	X	48951974	48951974	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	48951974	48951974	C	T	SNP	CACNA1F	NM_005183	human	genbank	54_36p	-1	reviewed	missense	c.5101	p.G1701R	0	NULL	"superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ"	-	no_errors
CACNA1F	778	broad.mit.edu	36	X	48954002	48954002	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	48954002	48954002	C	A	SNP	CACNA1F	NM_005183	human	genbank	54_36p	-1	reviewed	missense	c.4510	p.A1504S	1	NULL	"HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels"	-	no_errors
CACNA1F	778	broad.mit.edu	36	X	48970015	48970015	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	48970015	48970015	C	G	SNP	CACNA1F	NM_005183	human	genbank	54_36p	-1	reviewed	splice_site	c.1402+1	e10+1	0.98	-	-	-	no_errors
PPP1R3F	89801	broad.mit.edu	36	X	49029240	49029240	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	49029240	49029240	G	C	SNP	PPP1R3F	NM_033215	human	genbank	54_36p	1	validated	missense	c.1144	p.V382L	1	NULL	HMMPfam_CBM_21	-	no_errors
CLCN5	1184	broad.mit.edu	36	X	49743532	49743532	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	49743532	49743532	G	T	SNP	CLCN5	NM_000084	human	genbank	54_36p	1	reviewed	missense	c.2157	p.L719F	0.76	"HMMPfam_CBS,superfamily_CBS-domain,HMMSmart_SM00116"	"superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMSmart_SM00116,HMMPfam_CBS"	-	no_errors
CCNB3	85417	broad.mit.edu	36	X	50054721	50054721	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	50054721	50054721	G	A	SNP	CCNB3	NM_033031	human	genbank	54_36p	1	reviewed	missense	c.323	p.R108Q	0	NULL	"superfamily_Cyclin-like,HMMPfam_Cyclin_N,HMMSmart_SM00385,HMMPfam_Cyclin_C"	-	no_errors
CCNB3	85417	broad.mit.edu	36	X	50068991	50068991	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	50068991	50068991	C	T	SNP	CCNB3	NM_033031	human	genbank	54_36p	1	reviewed	missense	c.1082	p.S361F	0	NULL	"HMMPfam_Cyclin_C,HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like"	-	no_errors
DGKK	139189	broad.mit.edu	36	X	50139449	50139449	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	50139449	50139449	C	G	SNP	DGKK	ENST00000376025	human	ensembl	54_36p	-1	known	missense	c.2778	p.L926F	1	"HMMPfam_DAGK_acc,HMMSmart_SM00045"	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045"	-	no_errors
BMP15	9210	broad.mit.edu	36	X	50675797	50675797	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	50675797	50675797	A	T	SNP	BMP15	NM_005448	human	genbank	54_36p	1	reviewed	missense	c.629	p.Q210L	0.42	NULL	"superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1"	-	no_errors
CXorf67	340602	broad.mit.edu	36	X	51167567	51167567	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	51167567	51167567	G	A	SNP	LOC340602	NM_203407	human	genbank	54_36p	1	predicted	missense	c.959	p.G320D	0.09	NULL	NULL	-	no_errors
CXorf67	340602	broad.mit.edu	36	X	51168089	51168089	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	51168089	51168089	C	T	SNP	LOC340602	NM_203407	human	genbank	54_36p	1	predicted	missense	c.1481	p.T494I	0	NULL	NULL	-	no_errors
GSPT2	23708	broad.mit.edu	36	X	51503510	51503510	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	51503510	51503510	C	T	SNP	GSPT2	NM_018094	human	genbank	54_36p	1	validated	silent	c.48	p.D16	0.9	NULL	"HMMPfam_PAM2,superfamily_SSF52540,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translat_factor,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C"	-	no_errors
MAGED1	9500	broad.mit.edu	36	X	51656346	51656346	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	51656346	51656346	G	A	SNP	MAGED1	NM_001005333	human	genbank	54_36p	1	reviewed	silent	c.1023	p.Q341	1	NULL	HMMPfam_MAGE	-	no_errors
MAGED1	9500	broad.mit.edu	36	X	51656376	51656376	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	51656376	51656376	C	G	SNP	MAGED1	NM_001005333	human	genbank	54_36p	1	reviewed	silent	c.1053	p.L351	0.99	NULL	HMMPfam_MAGE	-	no_errors
XAGE5	170627	broad.mit.edu	36	X	52860880	52860880	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	52860880	52860880	C	A	SNP	XAGE5	NM_130775	human	genbank	54_36p	1	reviewed	nonsense	c.218	p.S73*	0.1	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
GPR173	54328	broad.mit.edu	36	X	53122750	53122750	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	53122750	53122750	C	T	SNP	GPR173	NM_018969	human	genbank	54_36p	1	validated	silent	c.222	p.V74	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
GPR173	54328	broad.mit.edu	36	X	53122815	53122815	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	53122815	53122815	G	T	SNP	GPR173	NM_018969	human	genbank	54_36p	1	validated	missense	c.287	p.C96F	1	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	"HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like"	-	no_errors
KDM5C	8242	broad.mit.edu	36	X	53239375	53239375	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	53239375	53239375	G	A	SNP	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	missense	c.4286	p.P1429L	0.96	NULL	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1"	-	no_errors
KDM5C	8242	broad.mit.edu	36	X	53242839	53242839	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	X	53242839	53242839	C	T	SNP	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	missense	c.2735	p.G912E	0.58	HMMPfam_PLU-1	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD"	-	no_errors
KDM5C	8242	broad.mit.edu	36	X	53256378	53256379	+	Frame_Shift_Ins	INS	-	A	-	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	-	-	A	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	53256378	53256379	-	A	INS	JARID1C	NM_004187	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1689_1688	p.L564fs	1.000:1.000	"HMMSmart_SM00558,HMMPfam_JmjC"	"HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1"	-	no_errors
IQSEC2	23096	broad.mit.edu	36	X	53296272	53296272	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	53296272	53296272	C	A	SNP	IQSEC2	NM_015075	human	genbank	54_36p	-1	validated	missense	c.1596	p.E532D	1	NULL	"superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7,superfamily_SSF50729,HMMSmart_PH"	-	no_errors
IQSEC2	23096	broad.mit.edu	36	X	53297034	53297034	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	53297034	53297034	C	T	SNP	IQSEC2	NM_015075	human	genbank	54_36p	-1	validated	silent	c.834	p.P278	0.97	NULL	"HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMSmart_PH,superfamily_SSF50729"	-	no_errors
SMC1A	8243	broad.mit.edu	36	X	53452728	53452728	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	53452728	53452728	G	T	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.1535	p.P512H	1	"HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge"	"HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge"	-	no_errors
HUWE1	10075	broad.mit.edu	36	X	53588377	53588377	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	53588377	53588377	A	T	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.11120	p.L3707Q	1	NULL	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
HUWE1	10075	broad.mit.edu	36	X	53596376	53596376	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	53596376	53596376	C	T	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.8698	p.V2900M	0.41	NULL	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
HUWE1	10075	broad.mit.edu	36	X	53608260	53608260	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	53608260	53608260	C	A	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.7029	p.Q2343H	1	superfamily_ARM repeat	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
HUWE1	10075	broad.mit.edu	36	X	53612533	53612533	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	53612533	53612533	C	T	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.6551	p.S2184N	1	superfamily_ARM repeat	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
HUWE1	10075	broad.mit.edu	36	X	53624524	53624524	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	53624524	53624524	G	C	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	nonsense	c.5708	p.S1903*	1	superfamily_ARM repeat	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
HUWE1	10075	broad.mit.edu	36	X	53628780	53628780	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	53628780	53628780	A	T	SNP	HUWE1	NM_031407	human	genbank	54_36p	-1	validated	missense	c.4918	p.S1640T	1	"HMMPfam_WWE,superfamily_ARM repeat"	"HMMPfam_UBA,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WWE,superfamily_UBA-like,HMMPfam_DUF908,HMMPfam_DUF913,HMMSmart_SM00165,superfamily_ARM repeat"	-	no_errors
PHF8	23133	broad.mit.edu	36	X	54028157	54028157	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54028157	54028157	C	G	SNP	PHF8	NM_015107	human	genbank	54_36p	-1	validated	missense	c.2358	p.W786C	1	NULL	"superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_EGF_2,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC"	-	no_errors
PHF8	23133	broad.mit.edu	36	X	54031101	54031101	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	54031101	54031101	T	C	SNP	PHF8	NM_015107	human	genbank	54_36p	-1	validated	missense	c.1732	p.T578A	0.55	NULL	"HMMSmart_SM00249,HMMSmart_SM00558,superfamily_FYVE/PHD zinc finger,PatternScan_EGF_2,HMMPfam_JmjC,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Clavaminate synthase-like"	-	no_errors
PHF8	23133	broad.mit.edu	36	X	54037048	54037048	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54037048	54037048	T	C	SNP	PHF8	NM_015107	human	genbank	54_36p	-1	validated	missense	c.1337	p.Q446R	1	NULL	"HMMSmart_SM00249,HMMSmart_SM00558,superfamily_FYVE/PHD zinc finger,PatternScan_EGF_2,HMMPfam_JmjC,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Clavaminate synthase-like"	-	no_errors
PHF8	23133	broad.mit.edu	36	X	54043030	54043030	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54043030	54043030	C	T	SNP	PHF8	NM_015107	human	genbank	54_36p	-1	validated	missense	c.1231	p.E411K	1	NULL	"HMMSmart_SM00249,HMMSmart_SM00558,superfamily_FYVE/PHD zinc finger,PatternScan_EGF_2,HMMPfam_JmjC,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Clavaminate synthase-like"	-	no_errors
FAM120C	54954	broad.mit.edu	36	X	54123438	54123438	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54123438	54123438	T	A	SNP	FAM120C	NM_017848	human	genbank	54_36p	-1	validated	missense	c.2988	p.K996N	1	NULL	NULL	-	no_errors
WNK3	65267	broad.mit.edu	36	X	54276084	54276084	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54276084	54276084	G	A	SNP	WNK3	NM_020922	human	genbank	54_36p	-1	validated	nonsense	c.4723	p.Q1575*	0.61	NULL	"superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
WNK3	65267	broad.mit.edu	36	X	54292143	54292143	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	54292143	54292143	G	T	SNP	WNK3	NM_020922	human	genbank	54_36p	-1	validated	silent	c.3363	p.L1121	0.96	NULL	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
WNK3	65267	broad.mit.edu	36	X	54337938	54337938	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	54337938	54337938	G	A	SNP	WNK3	NM_020922	human	genbank	54_36p	-1	validated	missense	c.1466	p.T489M	0.09	superfamily_Kinase_like	"HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase"	-	no_errors
FGD1	2245	broad.mit.edu	36	X	54490597	54490597	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54490597	54490597	C	A	SNP	FGD1	NM_004463	human	genbank	54_36p	-1	reviewed	missense	c.2452	p.A818S	1	superfamily_SSF50729	"PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE"	-	no_errors
FGD1	2245	broad.mit.edu	36	X	54498936	54498936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54498936	54498936	C	T	SNP	FGD1	NM_004463	human	genbank	54_36p	-1	reviewed	missense	c.1849	p.D617N	1	"HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729"	"HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_FYVE,HMMSmart_FYVE,PatternScan_DH_1,HMMPfam_PH,HMMSmart_PH,superfamily_FYVE_PHD_ZnF,superfamily_SSF50729"	-	no_errors
ITIH5L	347365	broad.mit.edu	36	X	54801851	54801851	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54801851	54801851	G	T	SNP	ITIH5L	NM_198510	human	genbank	54_36p	-1	provisional	missense	c.1381	p.Q461K	1	"superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA"	"HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_ITI_HC_C"	-	no_errors
MAGED2	10916	broad.mit.edu	36	X	54853268	54853268	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54853268	54853268	C	T	SNP	MAGED2	NM_014599	human	genbank	54_36p	1	reviewed	missense	c.434	p.P145L	0.22	NULL	HMMPfam_MAGE	-	no_errors
TRO	7216	broad.mit.edu	36	X	54966658	54966658	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	54966658	54966658	C	G	SNP	TRO	NM_001039705	human	genbank	54_36p	1	reviewed	missense	c.968	p.T323S	0.03	NULL	HMMPfam_MAGE	-	no_errors
TRO	7216	broad.mit.edu	36	X	54966870	54966870	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	54966870	54966870	C	A	SNP	TRO	NM_001039705	human	genbank	54_36p	1	reviewed	missense	c.1180	p.L394M	0.99	NULL	HMMPfam_MAGE	-	no_errors
ALAS2	212	broad.mit.edu	36	X	55058878	55058878	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	55058878	55058878	C	T	SNP	ALAS2	NM_000032	human	genbank	54_36p	-1	reviewed	silent	c.1026	p.E342	1	"superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2"	"HMMPfam_Preseq_ALAS,superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2"	-	no_errors
USP51	158880	broad.mit.edu	36	X	55531044	55531044	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	55531044	55531044	T	C	SNP	USP51	NM_201286	human	genbank	54_36p	-1	validated	missense	c.1054	p.R352G	1	NULL	"HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
KLF8	11279	broad.mit.edu	36	X	56308437	56308437	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	56308437	56308437	G	A	SNP	KLF8	NM_007250	human	genbank	54_36p	1	provisional	missense	c.181	p.A61T	0.95	NULL	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
UBQLN2	29978	broad.mit.edu	36	X	56607115	56607115	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	56607115	56607115	T	G	SNP	UBQLN2	NM_013444	human	genbank	54_36p	1	reviewed	silent	c.84	p.A28	0.46	superfamily_Ubiquitin-like	"superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,HMMSmart_SM00727,superfamily_ARM repeat,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165"	-	no_errors
SPIN2A	54466	broad.mit.edu	36	X	57179003	57179003	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	57179003	57179003	G	A	SNP	SPIN2A	NM_019003	human	genbank	54_36p	-1	validated	silent	c.753	p.V251	1	HMMPfam_Spin-Ssty	HMMPfam_Spin-Ssty	-	no_errors
FAAH2	158584	broad.mit.edu	36	X	57335740	57335740	+	Splice_Site	SNP	T	T	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	57335740	57335740	T	G	SNP	FAAH2	NM_174912	human	genbank	54_36p	1	validated	splice_site	c.275+2	e2+2	0.98	-	-	-	no_errors
FAAH2	158584	broad.mit.edu	36	X	57374785	57374785	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	57374785	57374785	C	T	SNP	FAAH2	NM_174912	human	genbank	54_36p	1	validated	missense	c.442	p.R148C	1	"superfamily_Amidase signature (AS) enzymes,HMMPfam_Amidase"	"superfamily_Amidase signature (AS) enzymes,HMMPfam_Amidase,PatternScan_AMIDASES"	-	no_errors
FAAH2	158584	broad.mit.edu	36	X	57490193	57490193	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	57490193	57490193	C	G	SNP	FAAH2	NM_174912	human	genbank	54_36p	1	validated	silent	c.1224	p.S408	0.99	"HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes"	"HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes,PatternScan_AMIDASES"	-	no_errors
ZXDB	158586	broad.mit.edu	36	X	57636368	57636368	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	57636368	57636368	G	A	SNP	ZXDB	NM_007157	human	genbank	54_36p	1	validated	missense	c.1162	p.E388K	1	superfamily_C2H2 and C2HC zinc fingers	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZXDB	158586	broad.mit.edu	36	X	57636999	57636999	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	57636999	57636999	G	C	SNP	ZXDB	NM_007157	human	genbank	54_36p	1	validated	missense	c.1793	p.R598T	0.63	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
ZXDA	7789	broad.mit.edu	36	X	57952406	57952406	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	57952406	57952406	C	T	SNP	ZXDA	NM_007156	human	genbank	54_36p	-1	validated	missense	c.1174	p.A392T	1	"superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1"	"HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667"	-	no_errors
ZXDA	7789	broad.mit.edu	36	X	57952621	57952621	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	57952621	57952621	T	G	SNP	ZXDA	NM_007156	human	genbank	54_36p	-1	validated	missense	c.959	p.H320P	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
SPIN4	139886	broad.mit.edu	36	X	62487129	62487129	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	62487129	62487129	C	A	SNP	SPIN4	NM_001012968	human	genbank	54_36p	-1	validated	nonsense	c.295	p.E99*	1	NULL	HMMPfam_Spin-Ssty	-	no_errors
ARHGEF9	23229	broad.mit.edu	36	X	62815099	62815099	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	62815099	62815099	C	T	SNP	ARHGEF9	NM_015185	human	genbank	54_36p	-1	validated	missense	c.640	p.D214N	1	"superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF"	"PatternScan_DH_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH"	-	no_errors
ARHGEF9	23229	broad.mit.edu	36	X	62833729	62833729	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	62833729	62833729	C	T	SNP	ARHGEF9	NM_015185	human	genbank	54_36p	-1	validated	splice_site	c.561+1	e4+1	1	-	-	-	no_errors
FAM123B	139285	broad.mit.edu	36	X	63326799	63326799	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	63326799	63326799	G	C	SNP	FAM123B	NM_152424	human	genbank	54_36p	-1	validated	silent	c.3093	p.G1031	0.95	NULL	HMMPfam_WTX	-	no_errors
FAM123B	139285	broad.mit.edu	36	X	63326941	63326941	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	63326941	63326941	G	C	SNP	FAM123B	NM_152424	human	genbank	54_36p	-1	validated	missense	c.2951	p.S984C	0.01	NULL	HMMPfam_WTX	-	no_errors
FAM123B	139285	broad.mit.edu	36	X	63328322	63328322	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	63328322	63328322	A	T	SNP	FAM123B	NM_152424	human	genbank	54_36p	-1	validated	missense	c.1570	p.C524S	0.94	HMMPfam_WTX	HMMPfam_WTX	-	no_errors
MTMR8	55613	broad.mit.edu	36	X	63491423	63491423	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	63491423	63491423	T	A	SNP	MTMR8	NM_017677	human	genbank	54_36p	-1	provisional	missense	c.427	p.N143Y	0.04	superfamily_(Phosphotyrosine protein) phosphatases II	"superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
LAS1L	81887	broad.mit.edu	36	X	64654852	64654852	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	64654852	64654852	T	C	SNP	LAS1L	NM_031206	human	genbank	54_36p	-1	provisional	missense	c.1667	p.E556G	0.23	NULL	HMMPfam_Las1	-	no_errors
LAS1L	81887	broad.mit.edu	36	X	64660209	64660209	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	64660209	64660209	G	A	SNP	LAS1L	NM_031206	human	genbank	54_36p	-1	provisional	silent	c.1404	p.S468	1	NULL	HMMPfam_Las1	-	no_errors
LAS1L	81887	broad.mit.edu	36	X	64666232	64666232	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	64666232	64666232	A	C	SNP	LAS1L	NM_031206	human	genbank	54_36p	-1	provisional	missense	c.766	p.C256G	0	NULL	HMMPfam_Las1	-	no_errors
MSN	4478	broad.mit.edu	36	X	64875673	64875678	+	In_Frame_Del	DEL	GGCAGA	-	GGCAGA	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	GGCAGA	GGCAGA	-	-	GGCAGA	GGCAGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	64875673	64875678	GGCAGA	-	DEL	MSN	NM_002444	human	genbank	54_36p	1	reviewed	in_frame_del	c.1461_1466	p.EA489in_frame_del	0.992:1.000:1.000:1.000:1.000:1.000	"HMMPfam_ERM,superfamily_Moesin"	"HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin"	"(deletion:cds_exon[64875557,64875781])"	no_errors
VSIG4	11326	broad.mit.edu	36	X	65170331	65170331	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	65170331	65170331	C	T	SNP	VSIG4	NM_007268	human	genbank	54_36p	-1	validated	missense	c.122	p.C41Y	0.87	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406"	"superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMSmart_SM00408,HMMPfam_ig"	-	no_errors
HEPH	9843	broad.mit.edu	36	X	65307207	65307207	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	65307207	65307207	G	T	SNP	HEPH	NM_138737	human	genbank	54_36p	1	provisional	missense	c.70	p.A24S	0.9	superfamily_Cupredoxins	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2"	-	no_errors
HEPH	9843	broad.mit.edu	36	X	65340096	65340096	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	65340096	65340096	C	A	SNP	HEPH	NM_014799	human	genbank	54_36p	1	reviewed	missense	c.1442	p.P481H	0.96	superfamily_Cupredoxin	"superfamily_Cupredoxin,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2"	-	no_errors
OPHN1	4983	broad.mit.edu	36	X	67371131	67371131	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	67371131	67371131	C	G	SNP	OPHN1	NM_002547	human	genbank	54_36p	-1	reviewed	missense	c.409	p.D137H	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP"	-	no_errors
OPHN1	4983	broad.mit.edu	36	X	67419675	67419675	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	67419675	67419675	A	G	SNP	OPHN1	NM_002547	human	genbank	54_36p	-1	reviewed	missense	c.260	p.F87S	1	NULL	"HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SSF50729"	-	no_errors
STARD8	9754	broad.mit.edu	36	X	67854095	67854095	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	67854095	67854095	G	A	SNP	STARD8	NM_014725	human	genbank	54_36p	1	validated	missense	c.374	p.R125H	0.01	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234"	-	no_errors
STARD8	9754	broad.mit.edu	36	X	67855089	67855089	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	67855089	67855089	C	A	SNP	STARD8	NM_014725	human	genbank	54_36p	1	validated	missense	c.1368	p.N456K	0.98	NULL	"HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,superfamily_Bet v1-like"	-	no_errors
EFNB1	1947	broad.mit.edu	36	X	67976977	67976977	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	67976977	67976977	C	T	SNP	EFNB1	NM_004429	human	genbank	54_36p	1	reviewed	missense	c.796	p.R266C	1	NULL	"HMMPfam_Ephrin,superfamily_Cupredoxin,PatternScan_EPHRIN"	-	no_errors
PJA1	64219	broad.mit.edu	36	X	68297918	68297918	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	68297918	68297918	C	A	SNP	PJA1	NM_145119	human	genbank	54_36p	-1	validated	missense	c.1889	p.G630V	0.99	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
AWAT2	158835	broad.mit.edu	36	X	69178893	69178893	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	69178893	69178893	C	A	SNP	AWAT2	NM_001002254	human	genbank	54_36p	-1	validated	missense	c.716	p.G239V	0.9	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
AWAT1	158833	broad.mit.edu	36	X	69376745	69376745	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	69376745	69376745	G	T	SNP	AWAT1	NM_001013579	human	genbank	54_36p	1	provisional	missense	c.867	p.K289N	0.52	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
KIF4A	24137	broad.mit.edu	36	X	69480457	69480457	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	69480457	69480457	A	C	SNP	KIF4A	NM_012310	human	genbank	54_36p	1	validated	missense	c.1331	p.K444T	1	NULL	"HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1"	-	no_errors
KIF4A	24137	broad.mit.edu	36	X	69543574	69543574	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	69543574	69543574	G	A	SNP	KIF4A	NM_012310	human	genbank	54_36p	1	validated	missense	c.3179	p.G1060D	0.31	NULL	"HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases"	-	no_errors
GDPD2	54857	broad.mit.edu	36	X	69563254	69563254	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	69563254	69563254	C	T	SNP	GDPD2	NM_017711	human	genbank	54_36p	1	provisional	missense	c.494	p.A165V	0.99	NULL	"superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_GDPD"	-	no_errors
GDPD2	54857	broad.mit.edu	36	X	69563727	69563727	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	69563727	69563727	A	C	SNP	GDPD2	NM_017711	human	genbank	54_36p	1	provisional	missense	c.718	p.T240P	1	"HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl"	"HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl"	-	no_errors
TEX11	56159	broad.mit.edu	36	X	69743565	69743565	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	69743565	69743565	A	G	SNP	TEX11	NM_001003811	human	genbank	54_36p	-1	reviewed	missense	c.1964	p.M655T	0.05	NULL	"superfamily_TPR-like,HMMPfam_SPO22,HMMSmart_SM00028"	-	no_errors
MED12	9968	broad.mit.edu	36	X	70273030	70273030	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	70273030	70273030	C	T	SNP	MED12	NM_005120	human	genbank	54_36p	1	validated	missense	c.5200	p.P1734S	1	NULL	HMMPfam_Med12	-	no_errors
NLGN3	54413	broad.mit.edu	36	X	70306517	70306517	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	70306517	70306517	C	T	SNP	NLGN3	NM_018977	human	genbank	54_36p	1	validated	missense	c.2332	p.R778C	1	NULL	"HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2"	-	no_errors
ZMYM3	9203	broad.mit.edu	36	X	70382597	70382597	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70382597	70382597	G	T	SNP	ZMYM3	NM_005096	human	genbank	54_36p	-1	validated	nonsense	c.2649	p.C883*	1	NULL	"HMMPfam_zf-FCS,HMMSmart_SM00746"	-	no_errors
NONO	4841	broad.mit.edu	36	X	70428478	70428478	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70428478	70428478	A	C	SNP	NONO	NM_007363	human	genbank	54_36p	1	reviewed	silent	c.279	p.L93	0.96	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_NOPS"	-	no_errors
NONO	4841	broad.mit.edu	36	X	70431090	70431090	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70431090	70431090	T	C	SNP	NONO	NM_007363	human	genbank	54_36p	1	reviewed	missense	c.637	p.F213L	0.99	"HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD"	"HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_NOPS,superfamily_RNA-binding domain RBD"	-	no_errors
ITGB1BP2	26548	broad.mit.edu	36	X	70439016	70439016	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70439016	70439016	A	G	SNP	ITGB1BP2	NM_012278	human	genbank	54_36p	1	provisional	missense	c.202	p.K68E	1	NULL	"HMMPfam_CHORD,superfamily_HSP20_chap,HMMPfam_CS"	-	no_errors
TAF1	6872	broad.mit.edu	36	X	70514835	70514835	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	70514835	70514835	C	G	SNP	TAF1	NM_004606	human	genbank	54_36p	1	reviewed	missense	c.1019	p.S340C	1	NULL	"HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1"	-	no_errors
OGT	8473	broad.mit.edu	36	X	70693810	70693810	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70693810	70693810	C	A	SNP	OGT	NM_181672	human	genbank	54_36p	1	reviewed	missense	c.1361	p.T454K	1	"superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028"	"superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1"	-	no_errors
ACRC	93953	broad.mit.edu	36	X	70740618	70740618	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70740618	70740618	G	A	SNP	ACRC	NM_052957	human	genbank	54_36p	1	validated	missense	c.766	p.D256N	0.01	NULL	"HMMPfam_SprT-like,HMMSmart_SM00731"	-	no_errors
ACRC	93953	broad.mit.edu	36	X	70740639	70740639	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	70740639	70740639	G	C	SNP	ACRC	NM_052957	human	genbank	54_36p	1	validated	missense	c.787	p.E263Q	0	NULL	"HMMSmart_SM00731,HMMPfam_SprT-like"	-	no_errors
ACRC	93953	broad.mit.edu	36	X	70741065	70741065	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70741065	70741065	C	G	SNP	ACRC	NM_052957	human	genbank	54_36p	1	validated	missense	c.1213	p.P405A	0.02	NULL	"HMMSmart_SM00731,HMMPfam_SprT-like"	-	no_errors
ACRC	93953	broad.mit.edu	36	X	70745675	70745675	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70745675	70745675	T	A	SNP	ACRC	NM_052957	human	genbank	54_36p	1	validated	missense	c.1594	p.S532T	0.31	"HMMSmart_SM00731,HMMPfam_SprT-like"	"HMMSmart_SM00731,HMMPfam_SprT-like"	-	no_errors
CXCR3	2833	broad.mit.edu	36	X	70753547	70753547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	70753547	70753547	C	T	SNP	CXCR3	NM_001504	human	genbank	54_36p	-1	reviewed	missense	c.500	p.R167H	0	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
RGAG4	340526	broad.mit.edu	36	X	71267322	71267322	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	71267322	71267322	A	C	SNP	RGAG4	NM_001024455	human	genbank	54_36p	-1	provisional	missense	c.794	p.L265W	1	HMMPfam_Retrotrans_gag	HMMPfam_Retrotrans_gag	-	no_errors
RGAG4	340526	broad.mit.edu	36	X	71267780	71267780	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	71267780	71267780	G	A	SNP	RGAG4	NM_001024455	human	genbank	54_36p	-1	provisional	silent	c.336	p.S112	0	NULL	HMMPfam_Retrotrans_gag	-	no_errors
PHKA1	5255	broad.mit.edu	36	X	71772949	71772949	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	71772949	71772949	C	G	SNP	PHKA1	NM_002637	human	genbank	54_36p	-1	validated	missense	c.1472	p.R491T	1	HMMPfam_PHK_AB	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	-	no_errors
PHKA1	5255	broad.mit.edu	36	X	71781000	71781000	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	71781000	71781000	C	A	SNP	PHKA1	NM_002637	human	genbank	54_36p	-1	validated	missense	c.1396	p.A466S	1	HMMPfam_PHK_AB	"HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases"	-	no_errors
SLC16A2	6567	broad.mit.edu	36	X	73668015	73668015	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	73668015	73668015	G	A	SNP	SLC16A2	NM_006517	human	genbank	54_36p	1	reviewed	missense	c.1744	p.E582K	1	superfamily_MFS_gen_substrate_transporter	"superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1"	-	no_errors
RLIM	51132	broad.mit.edu	36	X	73728373	73728373	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	73728373	73728373	G	A	SNP	RLIM	NM_016120	human	genbank	54_36p	-1	reviewed	missense	c.1502	p.S501L	0.85	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4"	-	no_errors
RLIM	51132	broad.mit.edu	36	X	73729525	73729525	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	73729525	73729525	C	A	SNP	RLIM	NM_016120	human	genbank	54_36p	-1	reviewed	missense	c.350	p.R117I	1	NULL	"HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
KIAA2022	340533	broad.mit.edu	36	X	73877060	73877060	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	73877060	73877060	T	C	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	missense	c.4057	p.I1353V	1	NULL	NULL	-	no_errors
KIAA2022	340533	broad.mit.edu	36	X	73877895	73877895	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	73877895	73877895	C	T	SNP	KIAA2022	NM_001008537	human	genbank	54_36p	-1	validated	silent	c.3222	p.P1074	0.91	NULL	NULL	-	no_errors
ABCB7	22	broad.mit.edu	36	X	74211977	74211977	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	74211977	74211977	A	G	SNP	ABCB7	NM_004299	human	genbank	54_36p	-1	reviewed	missense	c.803	p.L268S	1	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane"	"superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1"	-	no_errors
ABCB7	22	broad.mit.edu	36	X	74292690	74292690	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	74292690	74292690	G	A	SNP	ABCB7	NM_004299	human	genbank	54_36p	-1	reviewed	missense	c.143	p.A48V	0	NULL	"HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540"	-	no_errors
ZDHHC15	158866	broad.mit.edu	36	X	74566512	74566512	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	74566512	74566512	G	A	SNP	ZDHHC15	NM_144969	human	genbank	54_36p	-1	provisional	missense	c.478	p.P160S	1	HMMPfam_zf-DHHC	HMMPfam_zf-DHHC	-	no_errors
ZDHHC15	158866	broad.mit.edu	36	X	74659467	74659467	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	74659467	74659467	C	T	SNP	ZDHHC15	NM_144969	human	genbank	54_36p	-1	provisional	missense	c.118	p.V40I	1	NULL	HMMPfam_zf-DHHC	-	no_errors
CXorf26	51260	broad.mit.edu	36	X	75311718	75311718	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	75311718	75311718	A	T	SNP	CXorf26	NM_016500	human	genbank	54_36p	1	predicted	silent	c.165	p.S55	1	HMMPfam_DUF757	HMMPfam_DUF757	-	no_errors
PGK1	5230	broad.mit.edu	36	X	77255900	77255900	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	77255900	77255900	T	G	SNP	PGK1	NM_000291	human	genbank	54_36p	1	reviewed	missense	c.120	p.I40M	1	"HMMPfam_PGK,superfamily_Phosphoglycerate kinase"	"HMMPfam_PGK,superfamily_Phosphoglycerate kinase,PatternScan_PGLYCERATE_KINASE"	-	no_errors
CYSLTR1	10800	broad.mit.edu	36	X	77415025	77415025	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	77415025	77415025	G	C	SNP	CYSLTR1	NM_006639	human	genbank	54_36p	-1	reviewed	missense	c.875	p.P292R	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	-	no_errors
ZCCHC5	203430	broad.mit.edu	36	X	77799795	77799795	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	77799795	77799795	C	G	SNP	ZCCHC5	NM_152694	human	genbank	54_36p	-1	provisional	missense	c.779	p.S260T	0.17	NULL	"HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC"	-	no_errors
LPAR4	2846	broad.mit.edu	36	X	77897514	77897514	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	77897514	77897514	C	A	SNP	LPAR4	NM_005296	human	genbank	54_36p	1	reviewed	silent	c.492	p.I164	0.97	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
P2RY10	27334	broad.mit.edu	36	X	78102820	78102820	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	78102820	78102820	T	A	SNP	P2RY10	NM_014499	human	genbank	54_36p	1	reviewed	silent	c.147	p.L49	0.86	superfamily_SSF81321	"PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1"	-	no_errors
TBX22	50945	broad.mit.edu	36	X	79167900	79167900	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	79167900	79167900	C	A	SNP	TBX22	NM_001109878	human	genbank	54_36p	1	reviewed	missense	c.601	p.L201I	1	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box"	"superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2"	-	no_errors
BRWD3	254065	broad.mit.edu	36	X	79832149	79832149	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	79832149	79832149	A	C	SNP	BRWD3	NM_153252	human	genbank	54_36p	-1	validated	missense	c.3701	p.V1234G	1	"superfamily_Bromodomain,HMMSmart_SM00297"	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	-	no_errors
BRWD3	254065	broad.mit.edu	36	X	79876317	79876330	+	Frame_Shift_Del	DEL	CCAAATAATATATT	-	CCAAATAATATATT	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	CCAAATAATATATT	CCAAATAATATATT	-	-	CCAAATAATATATT	CCAAATAATATATT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	79876317	79876330	CCAAATAATATATT	-	DEL	BRWD3	NM_153252	human	genbank	54_36p	-1	validated	frame_shift_del	c.1042_1029	p.I344fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	"superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320"	"HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain"	"(deletion:cds_exon[79876273,79876373])"	no_errors
POU3F4	5456	broad.mit.edu	36	X	82650625	82650625	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	82650625	82650625	G	T	SNP	POU3F4	NM_000307	human	genbank	54_36p	1	reviewed	missense	c.637	p.A213S	1	"HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1"	"HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
HDX	139324	broad.mit.edu	36	X	83610663	83610663	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	83610663	83610663	T	C	SNP	HDX	NM_144657	human	genbank	54_36p	-1	provisional	missense	c.724	p.N242D	0.13	NULL	"HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox"	-	no_errors
POF1B	79983	broad.mit.edu	36	X	84457380	84457380	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	84457380	84457380	A	C	SNP	POF1B	NM_024921	human	genbank	54_36p	-1	validated	missense	c.871	p.S291A	1	NULL	NULL	-	no_errors
CHM	1121	broad.mit.edu	36	X	85123432	85123432	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	85123432	85123432	A	T	SNP	CHM	NM_000390	human	genbank	54_36p	-1	reviewed	missense	c.154	p.F52I	1	"superfamily_SSF51905,HMMPfam_GDI"	"superfamily_SSF51905,HMMPfam_GDI,superfamily_SSF54373"	-	no_errors
DACH2	117154	broad.mit.edu	36	X	85836795	85836795	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	85836795	85836795	T	A	SNP	DACH2	NM_053281	human	genbank	54_36p	1	reviewed	silent	c.888	p.A296	0.98	NULL	"HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain"	-	no_errors
DACH2	117154	broad.mit.edu	36	X	85881416	85881416	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	85881416	85881416	C	A	SNP	DACH2	NM_053281	human	genbank	54_36p	1	reviewed	missense	c.1115	p.P372Q	1	NULL	"HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain"	-	no_errors
DACH2	117154	broad.mit.edu	36	X	85956386	85956386	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	85956386	85956386	A	T	SNP	DACH2	NM_053281	human	genbank	54_36p	1	reviewed	missense	c.1577	p.K526M	1	NULL	"HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain"	-	no_errors
KLHL4	56062	broad.mit.edu	36	X	86775431	86775431	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	86775431	86775431	T	A	SNP	KLHL4	NM_057162	human	genbank	54_36p	1	reviewed	missense	c.1576	p.Y526N	1	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612"	-	no_errors
CPXCR1	53336	broad.mit.edu	36	X	87895468	87895468	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	87895468	87895468	C	T	SNP	CPXCR1	NM_033048	human	genbank	54_36p	1	validated	nonsense	c.397	p.R133*	0	NULL	HMMSmart_ZnF_C2H2	-	no_errors
DIAPH2	1730	broad.mit.edu	36	X	96214634	96214634	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	96214634	96214634	G	T	SNP	DIAPH2	NM_006729	human	genbank	54_36p	1	reviewed	missense	c.2089	p.G697W	0	"superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2"	"HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,HMMPfam_Drf_DAD"	-	no_errors
DIAPH2	1730	broad.mit.edu	36	X	96389487	96389487	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	96389487	96389487	A	T	SNP	DIAPH2	NM_006729	human	genbank	54_36p	1	reviewed	missense	c.2837	p.K946M	1	"HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	"HMMSmart_SM00498,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)"	-	no_errors
SYTL4	94121	broad.mit.edu	36	X	99827665	99827665	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	99827665	99827665	T	A	SNP	SYTL4	NM_080737	human	genbank	54_36p	-1	validated	missense	c.1427	p.H476L	1	"superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239"	"HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2"	-	no_errors
NOX1	27035	broad.mit.edu	36	X	100003844	100003844	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	100003844	100003844	C	A	SNP	NOX1	NM_007052	human	genbank	54_36p	-1	reviewed	missense	c.776	p.R259L	0.02	NULL	"HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_8,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_6"	-	no_errors
NOX1	27035	broad.mit.edu	36	X	100004415	100004415	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	100004415	100004415	G	T	SNP	NOX1	NM_007052	human	genbank	54_36p	-1	reviewed	silent	c.388	p.R130	0.05	HMMPfam_Ferric_reduct	"HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin synthase domain-like,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain"	-	no_errors
XKRX	402415	broad.mit.edu	36	X	100056313	100056313	+	Silent	SNP	G	G	T	rs61740851	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	100056313	100056313	G	T	SNP	XKRX	NM_212559	human	genbank	54_36p	-1	provisional	silent	c.1059	p.V353	0.98	NULL	NULL	-	no_errors
ARL13A	392509	broad.mit.edu	36	X	100127452	100127452	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	100127452	100127452	G	T	SNP	ARL13A	NM_001012990	human	genbank	54_36p	1	validated	missense	c.271	p.G91W	1	"superfamily_SSF52540,HMMPfam_Arf"	"superfamily_SSF52540,HMMPfam_Arf"	-	no_errors
ARL13A	392509	broad.mit.edu	36	X	100129873	100129873	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	100129873	100129873	G	C	SNP	ARL13A	NM_001012990	human	genbank	54_36p	1	validated	missense	c.689	p.R230T	0.83	NULL	"HMMPfam_Arf,superfamily_SSF52540"	-	no_errors
DRP2	1821	broad.mit.edu	36	X	100377632	100377674	+	Splice_Site	DEL	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	-	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	100377632	100377674	GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA	-	DEL	DRP2	NM_001939	human	genbank	54_36p	1	validated	splice_site_del	c.245_281	p.C82fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.984:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000	NULL	"HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1"	"(deletion:cds_exon[100377505,100377668], intron[100377669,100379263])"	no_errors
DRP2	1821	broad.mit.edu	36	X	100380655	100380655	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	100380655	100380655	C	T	SNP	DRP2	NM_001939	human	genbank	54_36p	1	validated	silent	c.468	p.G156	1	"HMMSmart_SPEC,superfamily_Spectrin"	"HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1"	-	no_errors
ARMCX1	51309	broad.mit.edu	36	X	100694665	100694665	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	100694665	100694665	C	T	SNP	ARMCX1	NM_016608	human	genbank	54_36p	1	reviewed	silent	c.96	p.D32	0.84	NULL	"superfamily_ARM-type_fold,HMMPfam_DUF634"	-	no_errors
ARMCX1	51309	broad.mit.edu	36	X	100694882	100694882	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	X	100694882	100694882	G	C	SNP	ARMCX1	NM_016608	human	genbank	54_36p	1	reviewed	missense	c.313	p.E105Q	1	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
ARMCX1	51309	broad.mit.edu	36	X	100695400	100695400	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	100695400	100695400	C	T	SNP	ARMCX1	NM_016608	human	genbank	54_36p	1	reviewed	silent	c.831	p.N277	0.99	"HMMPfam_DUF634,superfamily_ARM-type_fold"	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
ARMCX3	51566	broad.mit.edu	36	X	100766912	100766912	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	100766912	100766912	C	G	SNP	ARMCX3	NM_016607	human	genbank	54_36p	1	reviewed	missense	c.287	p.A96G	1	superfamily_ARM-type_fold	"superfamily_ARM-type_fold,HMMPfam_DUF634"	-	no_errors
ARMCX3	51566	broad.mit.edu	36	X	100767422	100767422	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	100767422	100767422	T	A	SNP	ARMCX3	NM_016607	human	genbank	54_36p	1	reviewed	missense	c.797	p.L266H	1	"HMMPfam_DUF634,superfamily_ARM-type_fold"	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
ARMCX2	9823	broad.mit.edu	36	X	100798243	100798243	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	100798243	100798243	C	T	SNP	ARMCX2	NM_014782	human	genbank	54_36p	-1	reviewed	missense	c.988	p.A330T	1	NULL	"superfamily_ARM-type_fold,HMMPfam_DUF634"	-	no_errors
ARMCX2	9823	broad.mit.edu	36	X	100798262	100798284	+	Frame_Shift_Del	DEL	GGCTGCAGCAGCTGCTGCAGCCC	-	GGCTGCAGCAGCTGCTGCAGCCC	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	GGCTGCAGCAGCTGCTGCAGCCC	GGCTGCAGCAGCTGCTGCAGCCC	-	-	GGCTGCAGCAGCTGCTGCAGCCC	GGCTGCAGCAGCTGCTGCAGCCC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	100798262	100798284	GGCTGCAGCAGCTGCTGCAGCCC	-	DEL	ARMCX2	NM_014782	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.969_947	p.G316fs	0.994:0.998:0.998:0.997:0.998:0.999:0.998:1.000:0.999:0.990:0.996:0.996:0.966:0.978:0.982:0.984:0.995:0.994:0.953:0.963:0.964:0.962:0.994	NULL	"superfamily_ARM-type_fold,HMMPfam_DUF634"	"(deletion:cds_exon[100797332,100799230])"	no_errors
ARMCX2	9823	broad.mit.edu	36	X	100798316	100798316	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	100798316	100798316	G	A	SNP	ARMCX2	NM_014782	human	genbank	54_36p	-1	reviewed	silent	c.915	p.D305	0.87	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
ARMCX2	9823	broad.mit.edu	36	X	100798796	100798796	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	100798796	100798796	C	T	SNP	ARMCX2	NM_014782	human	genbank	54_36p	-1	reviewed	silent	c.435	p.V145	0	NULL	"HMMPfam_DUF634,superfamily_ARM-type_fold"	-	no_errors
ZMAT1	84460	broad.mit.edu	36	X	101025268	101025268	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	101025268	101025268	C	T	SNP	ZMAT1	NM_001011657	human	genbank	54_36p	-1	validated	missense	c.1787	p.R596Q	0.99	NULL	"HMMSmart_SM00451,HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZMAT1	84460	broad.mit.edu	36	X	101039517	101039517	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	101039517	101039517	G	A	SNP	ZMAT1	NM_001011657	human	genbank	54_36p	-1	validated	missense	c.485	p.S162L	0.09	NULL	"HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-U1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
TCEAL2	140597	broad.mit.edu	36	X	101268629	101268629	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	101268629	101268629	G	A	SNP	TCEAL2	NM_080390	human	genbank	54_36p	1	reviewed	silent	c.171	p.P57	0	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
TCEAL6	158931	broad.mit.edu	36	X	101282848	101282848	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	101282848	101282848	C	T	SNP	TCEAL6	NM_001006938	human	genbank	54_36p	-1	validated	missense	c.112	p.A38T	0	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
NXF2B	728343	broad.mit.edu	36	X	101502189	101502189	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	101502189	101502189	G	T	SNP	NXF2B	NM_001099686	human	genbank	54_36p	-1	inferred	missense	c.1870	p.Q624K	0.81	"superfamily_UBA_like,HMMSmart_TAP_C"	"superfamily_SSF54928,HMMPfam_Tap-RNA_bind,superfamily_SSF52058,superfamily_SSF54427,HMMPfam_NTF2,superfamily_UBA_like,HMMSmart_TAP_C,HMMPfam_TAP_C"	-	no_errors
RAB40AL	282808	broad.mit.edu	36	X	102079466	102079466	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	102079466	102079466	G	A	SNP	RAB40AL	NM_001031834	human	genbank	54_36p	1	provisional	silent	c.564	p.K188	1	HMMSmart_SOCS	"superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,HMMSmart_SOCS,HMMPfam_SOCS_box"	-	no_errors
BEX1	55859	broad.mit.edu	36	X	102204510	102204510	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1565-01A-01W	TCGA-24-1565-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	102204510	102204510	G	C	SNP	BEX1	NM_018476	human	genbank	54_36p	-1	validated	missense	c.349	p.H117D	1	HMMPfam_BEX	HMMPfam_BEX	-	no_errors
BEX4	56271	broad.mit.edu	36	X	102357839	102357839	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	102357839	102357839	A	G	SNP	BEX4	NM_001080425	human	genbank	54_36p	1	validated	silent	c.102	p.E34	0.04	HMMPfam_BEX	HMMPfam_BEX	-	no_errors
BEX2	84707	broad.mit.edu	36	X	102451537	102451537	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	X	102451537	102451537	C	T	SNP	BEX2	NM_032621	human	genbank	54_36p	-1	validated	silent	c.24	p.A8	0	NULL	HMMPfam_BEX	-	no_errors
TCEAL3	85012	broad.mit.edu	36	X	102750764	102750764	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	102750764	102750764	A	T	SNP	TCEAL3	NM_001006933	human	genbank	54_36p	1	reviewed	missense	c.116	p.E39V	0	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
TCEAL1	9338	broad.mit.edu	36	X	102771617	102771617	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	102771617	102771617	G	A	SNP	TCEAL1	NM_001006639	human	genbank	54_36p	1	reviewed	silent	c.117	p.S39	0.96	HMMPfam_TFA	HMMPfam_TFA	-	no_errors
PLP1	5354	broad.mit.edu	36	X	102928267	102928267	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	102928267	102928267	C	T	SNP	PLP1	NM_000533	human	genbank	54_36p	1	reviewed	missense	c.409	p.R137W	1	HMMPfam_Myelin_PLP	"HMMPfam_Myelin_PLP,PatternScan_MYELIN_PLP_1,HMMSmart_SM00002,PatternScan_MYELIN_PLP_2"	-	no_errors
H2BFWT	158983	broad.mit.edu	36	X	103154861	103154861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	103154861	103154861	G	T	SNP	H2BFWT	NM_001002916	human	genbank	54_36p	-1	provisional	missense	c.28	p.P10T	0	NULL	"PatternScan_HISTONE_H2B,superfamily_Histone-fold,HMMSmart_H2B,HMMPfam_Histone"	-	no_errors
FAM199X	139231	broad.mit.edu	36	X	103321041	103321041	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	103321041	103321041	T	C	SNP	CXorf39	NM_207318	human	genbank	54_36p	1	validated	missense	c.1093	p.F365L	1	NULL	NULL	-	no_errors
ESX1	80712	broad.mit.edu	36	X	103381695	103381695	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	103381695	103381695	G	A	SNP	ESX1	NM_153448	human	genbank	54_36p	-1	validated	missense	c.1091	p.A364V	0	NULL	"superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
IL1RAPL2	26280	broad.mit.edu	36	X	104327040	104327040	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	104327040	104327040	C	A	SNP	IL1RAPL2	NM_017416	human	genbank	54_36p	1	reviewed	missense	c.310	p.H104N	1	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR"	-	no_errors
TEX13A	56157	broad.mit.edu	36	X	104350948	104350948	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	104350948	104350948	C	G	SNP	TEX13A	ENST00000255513	human	ensembl	54_36p	-1	known	missense	c.586	p.E196Q	0	NULL	"superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,PatternScan_ZF_RANBP2_1"	-	no_errors
TEX13A	56157	broad.mit.edu	36	X	104351508	104351508	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	104351508	104351508	C	T	SNP	TEX13A	ENST00000255513	human	ensembl	54_36p	-1	known	missense	c.230	p.R77H	0.03	NULL	"HMMPfam_zf-RanBP,PatternScan_ZF_RANBP2_1,superfamily_Znf265 first zinc-finger domain"	-	no_errors
NRK	203447	broad.mit.edu	36	X	105039944	105039944	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	105039944	105039944	A	T	SNP	NRK	ENST00000243300	human	ensembl	54_36p	1	known	missense	c.1658	p.Q553L	0.27	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,HMMSmart_SM00036,HMMPfam_CNH"	-	no_errors
SERPINA7	6906	broad.mit.edu	36	X	105167461	105167461	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	105167461	105167461	A	T	SNP	SERPINA7	NM_000354	human	genbank	54_36p	-1	validated	missense	c.245	p.F82Y	0.67	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN"	"superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN"	-	no_errors
TBC1D8B	54885	broad.mit.edu	36	X	106000625	106000625	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	106000625	106000625	G	C	SNP	TBC1D8B	NM_017752	human	genbank	54_36p	1	validated	missense	c.2893	p.A965P	1	superfamily_EF-hand	"HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand,PatternScan_EF_HAND_1"	-	no_errors
CLDN2	9075	broad.mit.edu	36	X	106058281	106058281	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	106058281	106058281	C	A	SNP	CLDN2	NM_020384	human	genbank	54_36p	1	validated	missense	c.167	p.T56K	1	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	"HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN"	-	no_errors
MORC4	79710	broad.mit.edu	36	X	106091944	106091944	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	106091944	106091944	T	A	SNP	MORC4	NM_024657	human	genbank	54_36p	-1	validated	missense	c.1210	p.T404S	0.81	NULL	"superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_zf-CW"	-	no_errors
MORC4	79710	broad.mit.edu	36	X	106116087	106116087	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	106116087	106116087	C	T	SNP	MORC4	NM_024657	human	genbank	54_36p	-1	validated	splice_site	c.309-1	e4-1	1	-	-	-	no_errors
RBM41	55285	broad.mit.edu	36	X	106199163	106199163	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	106199163	106199163	G	A	SNP	RBM41	NM_018301	human	genbank	54_36p	-1	provisional	silent	c.1053	p.G351	0.98	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
MID2	11043	broad.mit.edu	36	X	106970864	106970864	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	106970864	106970864	C	T	SNP	MID2	NM_012216	human	genbank	54_36p	1	reviewed	missense	c.253	p.R85C	1	superfamily_RING/U-box	###############################################################################################################################################################################################################################################################	-	no_errors
PSMD10	5716	broad.mit.edu	36	X	107214958	107214958	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	107214958	107214958	C	T	SNP	PSMD10	NM_002814	human	genbank	54_36p	-1	reviewed	missense	c.583	p.G195R	1	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	"superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank"	-	no_errors
COL4A6	1288	broad.mit.edu	36	X	107290440	107290440	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	107290440	107290440	C	T	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	silent	c.4437	p.V1479	1	"HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like"	"HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like"	-	no_errors
COL4A6	1288	broad.mit.edu	36	X	107317861	107317861	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	107317861	107317861	G	T	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	missense	c.1643	p.P548Q	0.08	HMMPfam_Collagen	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A6	1288	broad.mit.edu	36	X	107440712	107440712	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	107440712	107440712	T	A	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	silent	c.69	p.G23	1	NULL	"HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like"	-	no_errors
COL4A5	1287	broad.mit.edu	36	X	107744884	107744885	+	Missense_Mutation	DNP	GG	GG	AT	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	107744884	107744885	GG	AT	DNP	COL4A5	NM_033380	human	genbank	54_36p	1	reviewed	missense	c.2483_2484	p.G828D	1.000:0.872	HMMPfam_Collagen	"HMMPfam_Collagen,superfamily_C-type_lectin_fold,HMMPfam_C4,HMMSmart_C4"	-	no_errors
IRS4	8471	broad.mit.edu	36	X	107864039	107864039	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	107864039	107864039	C	T	SNP	IRS4	NM_003604	human	genbank	54_36p	-1	reviewed	missense	c.2192	p.R731H	0.75	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI"	-	no_errors
IRS4	8471	broad.mit.edu	36	X	107866023	107866023	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	107866023	107866023	C	A	SNP	IRS4	NM_003604	human	genbank	54_36p	-1	reviewed	nonsense	c.208	p.E70*	0.03	NULL	"HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729"	-	no_errors
AMMECR1	9949	broad.mit.edu	36	X	109447814	109447814	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	109447814	109447814	C	A	SNP	AMMECR1	NM_015365	human	genbank	54_36p	-1	validated	missense	c.142	p.G48C	1	NULL	HMMPfam_AMMECR1	-	no_errors
PAK3	5063	broad.mit.edu	36	X	110274786	110274786	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	110274786	110274786	A	T	SNP	PAK3	ENST00000360648	human	ensembl	54_36p	1	known	missense	c.319	p.S107C	1	HMMPfam_PBD	"HMMPfam_PBD,HMMSmart_PBD,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
PAK3	5063	broad.mit.edu	36	X	110324209	110324209	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	110324209	110324209	G	T	SNP	PAK3	NM_002578	human	genbank	54_36p	1	reviewed	missense	c.1017	p.W339C	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMPfam_PBD,HMMSmart_SM00285,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
PAK3	5063	broad.mit.edu	36	X	110346422	110346422	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	110346422	110346422	T	C	SNP	PAK3	NM_002578	human	genbank	54_36p	1	reviewed	missense	c.1525	p.S509P	0.99	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMPfam_PBD,HMMSmart_SM00285,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CAPN6	827	broad.mit.edu	36	X	110378577	110378577	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	110378577	110378577	G	A	SNP	CAPN6	NM_014289	human	genbank	54_36p	-1	reviewed	missense	c.1360	p.R454C	1	"HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2"	###############################################################################################################################################################################################################################################################	-	no_errors
CAPN6	827	broad.mit.edu	36	X	110393712	110393712	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	110393712	110393712	C	G	SNP	CAPN6	NM_014289	human	genbank	54_36p	-1	reviewed	missense	c.109	p.D37H	1	"HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001"	###############################################################################################################################################################################################################################################################	-	no_errors
HTR2C	3358	broad.mit.edu	36	X	114047420	114047420	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	114047420	114047420	C	T	SNP	HTR2C	NM_000868	human	genbank	54_36p	1	reviewed	missense	c.563	p.P188L	1	"superfamily_SSF81321,HMMPfam_7tm_1"	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
HTR2C	3358	broad.mit.edu	36	X	114047863	114047863	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	114047863	114047863	C	G	SNP	HTR2C	NM_000868	human	genbank	54_36p	1	reviewed	missense	c.1006	p.L336V	0.96	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
HTR2C	3358	broad.mit.edu	36	X	114048035	114048035	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	114048035	114048035	C	T	SNP	HTR2C	NM_000868	human	genbank	54_36p	1	reviewed	missense	c.1178	p.P393L	0.01	superfamily_SSF81321	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
LRCH2	57631	broad.mit.edu	36	X	114311156	114311156	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	114311156	114311156	T	C	SNP	LRCH2	NM_020871	human	genbank	54_36p	-1	validated	silent	c.960	p.S320	0.46	superfamily_SSF52058	"superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH"	-	no_errors
SLC6A14	11254	broad.mit.edu	36	X	115496779	115496779	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	115496779	115496779	G	T	SNP	SLC6A14	NM_007231	human	genbank	54_36p	1	validated	missense	c.1075	p.V359L	1	HMMPfam_SNF	"HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2"	-	no_errors
WDR44	54521	broad.mit.edu	36	X	117411049	117411049	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	117411049	117411049	G	A	SNP	WDR44	NM_019045	human	genbank	54_36p	1	validated	missense	c.613	p.A205T	0	NULL	"superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40"	-	no_errors
DOCK11	139818	broad.mit.edu	36	X	117590359	117590359	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	117590359	117590359	G	C	SNP	DOCK11	NM_144658	human	genbank	54_36p	1	validated	missense	c.1081	p.E361Q	1	NULL	"superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto"	-	no_errors
DOCK11	139818	broad.mit.edu	36	X	117693958	117693958	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	117693958	117693958	G	T	SNP	DOCK11	NM_144658	human	genbank	54_36p	1	validated	missense	c.5231	p.G1744V	1	NULL	"HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto,superfamily_SSF50729"	-	no_errors
LONRF3	79836	broad.mit.edu	36	X	117993496	117993496	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	117993496	117993496	G	C	SNP	LONRF3	NM_001031855	human	genbank	54_36p	1	reviewed	missense	c.725	p.R242P	0.98	superfamily_TPR-like	"superfamily_TPR-like,HMMSmart_SM00028,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_TPR_1,HMMPfam_LON,HMMSmart_SM00464"	-	no_errors
KIAA1210	57481	broad.mit.edu	36	X	118105348	118105348	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	118105348	118105348	C	T	SNP	KIAA1210	NM_020721	human	genbank	54_36p	-1	validated	silent	c.3873	p.Q1291	0	NULL	NULL	-	no_errors
KIAA1210	57481	broad.mit.edu	36	X	118112043	118112043	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	118112043	118112043	T	A	SNP	KIAA1210	NM_020721	human	genbank	54_36p	-1	validated	missense	c.1311	p.L437F	0.01	NULL	NULL	-	no_errors
KIAA1210	57481	broad.mit.edu	36	X	118134644	118134644	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	118134644	118134644	A	C	SNP	KIAA1210	NM_020721	human	genbank	54_36p	-1	validated	missense	c.493	p.C165G	1	NULL	NULL	-	no_errors
NKRF	55922	broad.mit.edu	36	X	118607769	118607769	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	118607769	118607769	G	A	SNP	NKRF	NM_017544	human	genbank	54_36p	-1	validated	silent	c.1647	p.I549	1	HMMSmart_SM00443	"superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358,HMMSmart_SM00443,HMMPfam_G-patch,HMMSmart_SM00393,superfamily_R3H domain,HMMPfam_R3H"	-	no_errors
UPF3B	65109	broad.mit.edu	36	X	118855948	118855948	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	118855948	118855948	G	A	SNP	UPF3B	NM_080632	human	genbank	54_36p	-1	reviewed	missense	c.1102	p.R368W	0.99	NULL	"HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD"	-	no_errors
UPF3B	65109	broad.mit.edu	36	X	118859110	118859110	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	118859110	118859110	C	T	SNP	UPF3B	NM_080632	human	genbank	54_36p	-1	reviewed	missense	c.764	p.R255K	1	NULL	"HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD"	-	no_errors
NKAP	79576	broad.mit.edu	36	X	118961340	118961340	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	118961340	118961340	G	A	SNP	NKAP	NM_024528	human	genbank	54_36p	-1	validated	missense	c.257	p.A86V	0.01	NULL	HMMPfam_DUF926	-	no_errors
RHOXF1	158800	broad.mit.edu	36	X	119133481	119133481	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	119133481	119133481	C	T	SNP	RHOXF1	NM_139282	human	genbank	54_36p	-1	provisional	missense	c.320	p.R107H	0	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox"	"superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1"	-	no_errors
ZBTB33	10009	broad.mit.edu	36	X	119271918	119271918	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	119271918	119271918	C	A	SNP	ZBTB33	NM_006777	human	genbank	54_36p	1	validated	missense	c.620	p.T207N	0.02	NULL	"superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
ZBTB33	10009	broad.mit.edu	36	X	119272073	119272073	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	119272073	119272073	A	G	SNP	ZBTB33	NM_006777	human	genbank	54_36p	1	validated	missense	c.775	p.S259G	1	NULL	"HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CT47B1	643311	broad.mit.edu	36	X	119892825	119892851	+	In_Frame_Del	DEL	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	TCCTCTGTGGCCTCCTCTGTGAGCTTC	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	TCCTCTGTGGCCTCCTCTGTGAGCTTC	TCCTCTGTGGCCTCCTCTGTGAGCTTC					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	119892825	119892851	TCCTCTGTGGCCTCCTCTGTGAGCTTC	-	DEL	CT47B1	ENST00000371310	human	ensembl	54_36p	-1	known	in_frame_del	c.728_702	p.KLTEEATEE235in_frame_del	0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.001:0.003:0.003:0.001:0.001	NULL	NULL	"(deletion:cds_exon[119892778,119893552])"	no_errors
GLUD2	2747	broad.mit.edu	36	X	120010098	120010098	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	120010098	120010098	A	G	SNP	GLUD2	NM_012084	human	genbank	54_36p	1	validated	silent	c.879	p.L293	1	"HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd"	"superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd"	-	no_errors
GRIA3	2892	broad.mit.edu	36	X	122360239	122360239	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	122360239	122360239	A	G	SNP	GRIA3	NM_000828	human	genbank	54_36p	1	reviewed	silent	c.984	p.R328	1	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor"	"superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan"	-	no_errors
THOC2	57187	broad.mit.edu	36	X	122587577	122587577	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	122587577	122587577	G	C	SNP	THOC2	NM_001081550	human	genbank	54_36p	-1	validated	missense	c.2924	p.T975R	1	NULL	NULL	-	no_errors
STAG2	10735	broad.mit.edu	36	X	123006782	123006782	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	123006782	123006782	C	T	SNP	STAG2	NM_001042749	human	genbank	54_36p	1	validated	missense	c.550	p.R184W	1	"HMMPfam_STAG,superfamily_ARM-type_fold"	"HMMPfam_STAG,superfamily_ARM-type_fold"	-	no_errors
STAG2	10735	broad.mit.edu	36	X	123027771	123027771	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	123027771	123027771	A	T	SNP	STAG2	NM_001042749	human	genbank	54_36p	1	validated	missense	c.2162	p.E721V	1	superfamily_ARM-type_fold	"HMMPfam_STAG,superfamily_ARM-type_fold"	-	no_errors
ODZ1	10178	broad.mit.edu	36	X	123345668	123345668	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	123345668	123345668	G	A	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.6773	p.A2258V	1	HMMPfam_RHS_repeat	"HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat"	-	no_errors
ODZ1	10178	broad.mit.edu	36	X	123603388	123603388	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	123603388	123603388	T	A	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.2011	p.T671S	0.98	NULL	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
ODZ1	10178	broad.mit.edu	36	X	123615119	123615119	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	123615119	123615119	G	T	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.1364	p.T455N	1	NULL	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
ODZ1	10178	broad.mit.edu	36	X	123857637	123857637	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	123857637	123857637	C	G	SNP	ODZ1	NM_014253	human	genbank	54_36p	-1	provisional	missense	c.352	p.D118H	1	HMMPfam_Ten_N	"HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196"	-	no_errors
DCAF12L2	340578	broad.mit.edu	36	X	125126337	125126337	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	125126337	125126337	C	A	SNP	WDR40C	NM_001013628	human	genbank	54_36p	-1	provisional	missense	c.1252	p.V418L	1	NULL	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	-	no_errors
DCAF12L2	340578	broad.mit.edu	36	X	125127403	125127403	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	125127403	125127403	C	A	SNP	WDR40C	NM_001013628	human	genbank	54_36p	-1	provisional	silent	c.186	p.A62	0.15	NULL	"HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40"	-	no_errors
DCAF12L1	139170	broad.mit.edu	36	X	125512955	125512955	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	125512955	125512955	C	A	SNP	WDR40B	NM_178470	human	genbank	54_36p	-1	reviewed	nonsense	c.1318	p.E440*	1	NULL	"PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40"	-	no_errors
ACTRT1	139741	broad.mit.edu	36	X	127013176	127013176	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	127013176	127013176	G	A	SNP	ACTRT1	NM_138289	human	genbank	54_36p	-1	provisional	missense	c.691	p.R231C	0.01	"HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067"	"HMMPfam_Actin,superfamily_SSF53067,HMMSmart_ACTIN"	-	no_errors
SMARCA1	6594	broad.mit.edu	36	X	128442389	128442389	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	128442389	128442389	A	G	SNP	SMARCA1	NM_003069	human	genbank	54_36p	-1	reviewed	silent	c.2412	p.I804	1	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI"	###############################################################################################################################################################################################################################################################	-	no_errors
SMARCA1	6594	broad.mit.edu	36	X	128473515	128473515	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	128473515	128473515	G	A	SNP	SMARCA1	NM_003069	human	genbank	54_36p	-1	reviewed	nonsense	c.757	p.R253*	1	"HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases"	###############################################################################################################################################################################################################################################################	-	no_errors
OCRL	4952	broad.mit.edu	36	X	128551809	128551809	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	128551809	128551809	C	T	SNP	OCRL	NM_000276	human	genbank	54_36p	1	reviewed	missense	c.2587	p.L863F	0.99	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
SASH3	54440	broad.mit.edu	36	X	128754653	128754653	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	128754653	128754653	C	T	SNP	SASH3	NM_018990	human	genbank	54_36p	1	provisional	missense	c.809	p.T270I	0.86	"superfamily_SH3,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2"	"superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2"	-	no_errors
UTP14A	10813	broad.mit.edu	36	X	128882166	128882166	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	128882166	128882166	G	T	SNP	UTP14A	NM_006649	human	genbank	54_36p	1	provisional	nonsense	c.805	p.E269*	1	HMMPfam_Utp14	HMMPfam_Utp14	-	no_errors
UTP14A	10813	broad.mit.edu	36	X	128891264	128891264	+	Nonstop_Mutation	SNP	G	G	C	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	128891264	128891264	G	C	SNP	UTP14A	NM_006649	human	genbank	54_36p	1	provisional	nonstop	c.2315	p.*772S	0.02	NULL	HMMPfam_Utp14	-	no_errors
BCORL1	63035	broad.mit.edu	36	X	128975119	128975119	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	128975119	128975119	A	G	SNP	BCORL1	NM_021946	human	genbank	54_36p	1	validated	silent	c.690	p.P230	0.97	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	-	no_errors
BCORL1	63035	broad.mit.edu	36	X	128976503	128976503	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	128976503	128976503	G	A	SNP	BCORL1	NM_021946	human	genbank	54_36p	1	validated	missense	c.2074	p.E692K	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
BCORL1	63035	broad.mit.edu	36	X	128977107	128977122	+	Frame_Shift_Del	DEL	GCTCCTTCGTTCCAGA	-	GCTCCTTCGTTCCAGA	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	GCTCCTTCGTTCCAGA	GCTCCTTCGTTCCAGA					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	128977107	128977122	GCTCCTTCGTTCCAGA	-	DEL	BCORL1	NM_021946	human	genbank	54_36p	1	validated	frame_shift_del	c.2678_2693	p.S894fs	0.998:0.988:0.975:0.970:0.823:0.808:0.745:0.595:0.582:0.604:0.614:0.692:0.710:0.740:0.989:0.998	NULL	"superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank"	"(deletion:cds_exon[128974607,128977870])"	no_errors
BCORL1	63035	broad.mit.edu	36	X	128984616	128984616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	128984616	128984616	G	A	SNP	BCORL1	NM_021946	human	genbank	54_36p	1	validated	missense	c.3671	p.R1224H	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
BCORL1	63035	broad.mit.edu	36	X	128990344	128990344	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	128990344	128990344	C	A	SNP	BCORL1	NM_021946	human	genbank	54_36p	1	validated	missense	c.4132	p.L1378I	1	NULL	"HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat"	-	no_errors
ELF4	2000	broad.mit.edu	36	X	129031065	129031065	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	129031065	129031065	G	A	SNP	ELF4	NM_001421	human	genbank	54_36p	-1	validated	missense	c.1078	p.P360S	0.8	superfamily_SSF46785	"superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
AIFM1	9131	broad.mit.edu	36	X	129091276	129091276	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	129091276	129091276	C	G	SNP	AIFM1	NM_004208	human	genbank	54_36p	-1	reviewed	missense	c.1779	p.K593N	1	superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain"	-	no_errors
AIFM1	9131	broad.mit.edu	36	X	129109175	129109175	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	129109175	129109175	G	T	SNP	AIFM1	NM_004208	human	genbank	54_36p	-1	reviewed	missense	c.579	p.F193L	1	"HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain"	"HMMPfam_Pyr_redox_2,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain,superfamily_FAD/NAD(P)-binding domain"	-	no_errors
ZNF280C	55609	broad.mit.edu	36	X	129205285	129205285	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	129205285	129205285	G	A	SNP	ZNF280C	NM_017666	human	genbank	54_36p	-1	validated	missense	c.314	p.S105L	0.04	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
SLC25A14	9016	broad.mit.edu	36	X	129306840	129306840	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	129306840	129306840	C	A	SNP	SLC25A14	NM_003951	human	genbank	54_36p	1	reviewed	missense	c.79	p.Q27K	1	NULL	"superfamily_Mitochondrial carrier,HMMPfam_Mito_carr"	-	no_errors
GPR119	139760	broad.mit.edu	36	X	129346247	129346247	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	129346247	129346247	C	A	SNP	GPR119	NM_178471	human	genbank	54_36p	-1	provisional	missense	c.856	p.V286L	1	superfamily_SSF81321	"superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1"	-	no_errors
GPR119	139760	broad.mit.edu	36	X	129346511	129346511	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	129346511	129346511	G	T	SNP	GPR119	NM_178471	human	genbank	54_36p	-1	provisional	missense	c.592	p.Q198K	1	"HMMPfam_7tm_1,superfamily_SSF81321"	"HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321"	-	no_errors
RBMX2	51634	broad.mit.edu	36	X	129370969	129370969	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	129370969	129370969	A	G	SNP	RBMX2	NM_016024	human	genbank	54_36p	1	validated	silent	c.231	p.K77	1	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	"superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1"	-	no_errors
ARHGAP36	158763	broad.mit.edu	36	X	130043567	130043570	+	Frame_Shift_Del	DEL	GACA	-	GACA	novel	Unknown	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	GACA	GACA	-	-	GACA	GACA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	130043567	130043570	GACA	-	DEL	FLJ30058	NM_144967	human	genbank	54_36p	1	validated	frame_shift_del	c.247_250	p.D83fs	0.791:0.800:0.786:0.845	NULL	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"(deletion:cds_exon[130043321,130043573])"	no_errors
ARHGAP36	158763	broad.mit.edu	36	X	130046292	130046292	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	130046292	130046292	G	A	SNP	FLJ30058	NM_144967	human	genbank	54_36p	1	validated	missense	c.760	p.V254M	1	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	"superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP"	-	no_errors
IGSF1	3547	broad.mit.edu	36	X	130237644	130237644	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	130237644	130237644	G	A	SNP	IGSF1	NM_001555	human	genbank	54_36p	-1	validated	silent	c.2868	p.L956	0.55	"superfamily_Immunoglobulin,HMMSmart_SM00409"	"superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408"	-	no_errors
IGSF1	3547	broad.mit.edu	36	X	130244862	130244862	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	130244862	130244862	T	C	SNP	IGSF1	NM_001555	human	genbank	54_36p	-1	validated	missense	c.725	p.E242G	1	"HMMSmart_SM00409,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
USP26	83844	broad.mit.edu	36	X	131987996	131987996	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	131987996	131987996	G	C	SNP	USP26	NM_031907	human	genbank	54_36p	-1	reviewed	missense	c.1919	p.S640C	0	"superfamily_Cysteine proteinases,HMMPfam_UCH"	"superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2"	-	no_errors
TFDP3	51270	broad.mit.edu	36	X	132179527	132179527	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	132179527	132179527	C	G	SNP	TFDP3	NM_016521	human	genbank	54_36p	-1	validated	missense	c.247	p.A83P	1	"HMMPfam_E2F_TDP,superfamily_Winged helix DNA-binding domain"	"HMMPfam_E2F_TDP,superfamily_Winged helix DNA-binding domain,HMMPfam_DP"	-	no_errors
PHF6	84295	broad.mit.edu	36	X	133376711	133376711	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	133376711	133376711	G	C	SNP	PHF6	NM_001015877	human	genbank	54_36p	1	reviewed	splice_site	c.730-1	e7-1	1	-	-	-	no_errors
DDX26B	203522	broad.mit.edu	36	X	134534421	134534421	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	134534421	134534421	G	T	SNP	DDX26B	NM_182540	human	genbank	54_36p	1	validated	nonsense	c.1303	p.E435*	1	NULL	"superfamily_vWA-like,PatternScan_DEAD_ATP_HELICASE"	-	no_errors
DDX26B	203522	broad.mit.edu	36	X	134534562	134534562	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	134534562	134534562	C	T	SNP	DDX26B	NM_182540	human	genbank	54_36p	1	validated	missense	c.1444	p.L482F	0.27	NULL	"PatternScan_DEAD_ATP_HELICASE,superfamily_vWA-like"	-	no_errors
SAGE1	55511	broad.mit.edu	36	X	134818353	134818353	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	134818353	134818353	G	A	SNP	SAGE1	NM_018666	human	genbank	54_36p	1	reviewed	missense	c.1352	p.R451Q	0	NULL	NULL	-	no_errors
SAGE1	55511	broad.mit.edu	36	X	134820333	134820333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	134820333	134820333	G	A	SNP	SAGE1	NM_018666	human	genbank	54_36p	1	reviewed	missense	c.1958	p.R653H	0	NULL	NULL	-	no_errors
SLC9A6	10479	broad.mit.edu	36	X	134920373	134920373	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	134920373	134920373	G	T	SNP	SLC9A6	NM_001042537	human	genbank	54_36p	1	validated	missense	c.1006	p.A336S	1	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors
MAP7D3	79649	broad.mit.edu	36	X	135130616	135130616	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	135130616	135130616	G	T	SNP	MAP7D3	NM_024597	human	genbank	54_36p	-1	validated	missense	c.2460	p.D820E	0	NULL	HMMPfam_MAP7	-	no_errors
GPR112	139378	broad.mit.edu	36	X	135255144	135255144	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	135255144	135255144	C	G	SNP	GPR112	NM_153834	human	genbank	54_36p	1	validated	missense	c.1613	p.P538R	0.01	NULL	"superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
GPR112	139378	broad.mit.edu	36	X	135313105	135313105	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	135313105	135313105	T	G	SNP	GPR112	NM_153834	human	genbank	54_36p	1	validated	missense	c.8612	p.V2871G	1	HMMPfam_7tm_2	"HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_ConA_like_lec_gl,PatternScan_G_PROTEIN_RECEP_F2_2"	-	no_errors
VGLL1	51442	broad.mit.edu	36	X	135458788	135458788	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	135458788	135458788	G	A	SNP	VGLL1	NM_016267	human	genbank	54_36p	1	provisional	missense	c.589	p.G197R	0.25	NULL	"HMMPfam_Vg_Tdu,HMMSmart_SM00711"	-	no_errors
ZIC3	7547	broad.mit.edu	36	X	136476579	136476579	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1477-01A-01D	TCGA-13-1477-10A-01D	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	136476579	136476579	G	A	SNP	ZIC3	NM_003413	human	genbank	54_36p	1	reviewed	silent	c.63	p.A21	1	NULL	"HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
ZIC3	7547	broad.mit.edu	36	X	136477535	136477535	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	136477535	136477535	C	G	SNP	ZIC3	NM_003413	human	genbank	54_36p	1	reviewed	missense	c.1019	p.A340G	1	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
ZIC3	7547	broad.mit.edu	36	X	136478821	136478821	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	136478821	136478821	C	T	SNP	ZIC3	NM_003413	human	genbank	54_36p	1	reviewed	silent	c.1155	p.D385	1	superfamily_SSF57667	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667"	-	no_errors
F9	2158	broad.mit.edu	36	X	138450950	138450950	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	138450950	138450950	G	C	SNP	F9	NM_000133	human	genbank	54_36p	1	reviewed	missense	c.327	p.K109N	1	"superfamily_GLA-domain,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL"	###############################################################################################################################################################################################################################################################	-	no_errors
ATP11C	286410	broad.mit.edu	36	X	138641482	138641482	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	138641482	138641482	C	A	SNP	ATP11C	NM_173694	human	genbank	54_36p	-1	validated	missense	c.3396	p.L1132F	1	NULL	"HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ATP11C	286410	broad.mit.edu	36	X	138693059	138693059	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	138693059	138693059	G	C	SNP	ATP11C	NM_173694	human	genbank	54_36p	-1	validated	missense	c.1709	p.S570W	1	"superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	"HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N"	-	no_errors
ATP11C	286410	broad.mit.edu	36	X	138729162	138729162	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	138729162	138729162	C	T	SNP	ATP11C	NM_173694	human	genbank	54_36p	-1	validated	splice_site	c.246+1	e3+1	1	-	-	-	no_errors
MAGEC1	9947	broad.mit.edu	36	X	140823425	140823425	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	140823425	140823425	T	A	SNP	MAGEC1	NM_005462	human	genbank	54_36p	1	reviewed	missense	c.2569	p.S857T	0	NULL	HMMPfam_MAGE	-	no_errors
SPANXN4	441525	broad.mit.edu	36	X	141949669	141949669	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	141949669	141949669	G	T	SNP	SPANXN4	NM_001009613	human	genbank	54_36p	1	validated	nonsense	c.271	p.G91*	0	NULL	NULL	-	no_errors
SLITRK4	139065	broad.mit.edu	36	X	142544093	142544093	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	142544093	142544093	G	T	SNP	SLITRK4	NM_173078	human	genbank	54_36p	-1	validated	missense	c.2498	p.A833D	1	NULL	"superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRNT"	-	no_errors
SLITRK4	139065	broad.mit.edu	36	X	142544276	142544276	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	142544276	142544276	A	G	SNP	SLITRK4	NM_173078	human	genbank	54_36p	-1	validated	missense	c.2315	p.I772T	1	NULL	"HMMPfam_LRRNT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like"	-	no_errors
SPANXN2	494119	broad.mit.edu	36	X	142623233	142623233	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	142623233	142623233	G	T	SNP	SPANXN2	NM_001009615	human	genbank	54_36p	-1	provisional	silent	c.111	p.P37	0	HMMPfam_SPAN-X	HMMPfam_SPAN-X	-	no_errors
SLITRK2	84631	broad.mit.edu	36	X	144711699	144711699	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	144711699	144711699	C	T	SNP	SLITRK2	NM_032539	human	genbank	54_36p	1	validated	missense	c.64	p.R22C	1	NULL	"HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT"	-	no_errors
SLITRK2	84631	broad.mit.edu	36	X	144713171	144713171	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	144713171	144713171	A	C	SNP	SLITRK2	NM_032539	human	genbank	54_36p	1	validated	missense	c.1536	p.K512N	0.91	"HMMSmart_SM00369,superfamily_L domain-like"	"HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like"	-	no_errors
FMR1	2332	broad.mit.edu	36	X	146832392	146832392	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	146832392	146832392	G	A	SNP	FMR1	NM_002024	human	genbank	54_36p	1	reviewed	missense	c.1325	p.R442Q	1	NULL	"HMMPfam_Agenet,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1"	-	no_errors
FMR1NB	158521	broad.mit.edu	36	X	146897883	146897883	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	146897883	146897883	G	C	SNP	FMR1NB	NM_152578	human	genbank	54_36p	1	provisional	missense	c.592	p.V198L	1	NULL	NULL	-	no_errors
AFF2	2334	broad.mit.edu	36	X	147726897	147726897	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	147726897	147726897	C	T	SNP	AFF2	NM_002025	human	genbank	54_36p	1	validated	missense	c.1121	p.S374F	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AFF2	2334	broad.mit.edu	36	X	147845064	147845064	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	147845064	147845064	C	T	SNP	AFF2	NM_002025	human	genbank	54_36p	1	validated	missense	c.1789	p.R597C	1	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
MAGEA11	4110	broad.mit.edu	36	X	148576548	148576548	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	148576548	148576548	A	G	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	silent	c.711	p.Y237	0.17	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGEA11	4110	broad.mit.edu	36	X	148576687	148576687	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	148576687	148576687	C	T	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	missense	c.572	p.S191N	0	NULL	HMMPfam_MAGE	-	no_errors
MAGEA11	4110	broad.mit.edu	36	X	148576946	148576946	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	148576946	148576946	C	A	SNP	MAGEA11	NM_005366	human	genbank	54_36p	-1	reviewed	missense	c.313	p.D105Y	0.01	NULL	HMMPfam_MAGE	-	no_errors
MAMLD1	10046	broad.mit.edu	36	X	149389665	149389665	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	149389665	149389665	C	G	SNP	MAMLD1	NM_005491	human	genbank	54_36p	1	validated	missense	c.1162	p.L388V	0.89	NULL	NULL	-	no_errors
MTM1	4534	broad.mit.edu	36	X	149560547	149560547	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	149560547	149560547	C	T	SNP	MTM1	NM_000252	human	genbank	54_36p	1	reviewed	missense	c.676	p.P226S	1	"superfamily_SSF52799,HMMPfam_Myotub-related"	"HMMPfam_GRAM,HMMSmart_GRAM,superfamily_SSF50729,superfamily_SSF52799,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
MTMR1	8776	broad.mit.edu	36	X	149656477	149656477	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	149656477	149656477	T	A	SNP	MTMR1	NM_003828	human	genbank	54_36p	1	reviewed	missense	c.1348	p.S450T	0.9	"superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404"	"HMMSmart_SM00568,superfamily_PH domain-like,HMMPfam_GRAM,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1"	-	no_errors
GPR50	9248	broad.mit.edu	36	X	150099212	150099212	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	150099212	150099212	G	T	SNP	GPR50	NM_004224	human	genbank	54_36p	1	validated	missense	c.499	p.G167C	1	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1"	"superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_TRYPSIN_HIS"	-	no_errors
GABRE	2564	broad.mit.edu	36	X	150874650	150874650	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	150874650	150874650	C	T	SNP	GABRE	NM_004961	human	genbank	54_36p	-1	reviewed	missense	c.983	p.R328H	1	"superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	"superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb"	-	no_errors
GABRE	2564	broad.mit.edu	36	X	150889328	150889328	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	150889328	150889328	G	A	SNP	GABRE	NM_004961	human	genbank	54_36p	-1	reviewed	missense	c.259	p.R87C	1	"HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD"	"HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL"	-	no_errors
MAGEA3	4102	broad.mit.edu	36	X	151686046	151686046	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	151686046	151686046	C	A	SNP	MAGEA3	NM_005362	human	genbank	54_36p	-1	reviewed	silent	c.777	p.R259	0	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGEA3	4102	broad.mit.edu	36	X	151686585	151686585	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	151686585	151686585	A	C	SNP	MAGEA3	NM_005362	human	genbank	54_36p	-1	reviewed	missense	c.238	p.W80G	0	NULL	HMMPfam_MAGE	-	no_errors
ZNF185	7739	broad.mit.edu	36	X	151864628	151864628	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	151864628	151864628	C	A	SNP	ZNF185	NM_007150	human	genbank	54_36p	1	validated	missense	c.1370	p.S457Y	0	NULL	"HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM"	-	no_errors
PNMA5	114824	broad.mit.edu	36	X	151910022	151910022	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	151910022	151910022	G	A	SNP	PNMA5	NM_001103150	human	genbank	54_36p	-1	validated	silent	c.777	p.V259	0	NULL	NULL	-	no_errors
PNMA5	114824	broad.mit.edu	36	X	151910376	151910376	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	151910376	151910376	T	C	SNP	PNMA5	NM_001103150	human	genbank	54_36p	-1	validated	silent	c.423	p.Q141	0	NULL	NULL	-	no_errors
PNMA3	29944	broad.mit.edu	36	X	151976523	151976523	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	151976523	151976523	T	C	SNP	PNMA3	NM_013364	human	genbank	54_36p	1	reviewed	missense	c.455	p.V152A	0.45	NULL	NULL	-	no_errors
TREX2	11219	broad.mit.edu	36	X	152363969	152363969	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	152363969	152363969	G	T	SNP	TREX2	NM_080701	human	genbank	54_36p	-1	reviewed	silent	c.114	p.S38	0.89	"HMMSmart_EXOIII,HMMPfam_Exonuc_X-T,superfamily_RNaseH_fold"	"HMMSmart_EXOIII,HMMPfam_Exonuc_X-T,superfamily_RNaseH_fold"	-	no_errors
ATP2B3	492	broad.mit.edu	36	X	152460403	152460403	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	152460403	152460403	C	T	SNP	ATP2B3	NM_001001344	human	genbank	54_36p	1	reviewed	silent	c.489	p.S163	0.43	"superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase"	###############################################################################################################################################################################################################################################################	-	no_errors
DUSP9	1852	broad.mit.edu	36	X	152568794	152568794	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	152568794	152568794	A	T	SNP	DUSP9	NM_001395	human	genbank	54_36p	1	reviewed	missense	c.995	p.N332I	1	"superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	"PatternScan_TYR_PHOSPHATASE_1,superfamily_Rhodanese-like,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc"	-	no_errors
SRPK3	26576	broad.mit.edu	36	X	152702942	152702942	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	152702942	152702942	G	C	SNP	SRPK3	NM_014370	human	genbank	54_36p	1	provisional	splice_site	c.1148-1	e11-1	0.95	-	-	-	no_errors
SRPK3	26576	broad.mit.edu	36	X	152702944	152702944	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	152702944	152702944	A	T	SNP	SRPK3	NM_014370	human	genbank	54_36p	1	provisional	silent	c.1149	p.T383	0.54	"superfamily_Kinase_like,HMMPfam_Pkinase"	"superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
L1CAM	3897	broad.mit.edu	36	X	152783059	152783059	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	152783059	152783059	C	T	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	nonsense	c.3234	p.W1078*	1	superfamily_Fibronectin type III	"HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
L1CAM	3897	broad.mit.edu	36	X	152783108	152783108	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	152783108	152783108	G	A	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	missense	c.3185	p.S1062F	0	superfamily_Fibronectin type III	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
L1CAM	3897	broad.mit.edu	36	X	152784006	152784006	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	152784006	152784006	G	T	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	silent	c.2691	p.A897	0.79	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
L1CAM	3897	broad.mit.edu	36	X	152784144	152784144	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	152784144	152784144	C	T	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	silent	c.2553	p.T851	0.99	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
L1CAM	3897	broad.mit.edu	36	X	152784377	152784377	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	X	152784377	152784377	G	C	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	silent	c.2523	p.V841	0.99	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
L1CAM	3897	broad.mit.edu	36	X	152789738	152789738	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	152789738	152789738	G	A	SNP	L1CAM	NM_000425	human	genbank	54_36p	-1	reviewed	missense	c.491	p.A164V	0.3	"HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin"	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin"	-	no_errors
NAA10	8260	broad.mit.edu	36	X	152848718	152848718	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	152848718	152848718	G	T	SNP	ARD1A	NM_003491	human	genbank	54_36p	-1	provisional	missense	c.624	p.D208E	1	NULL	"superfamily_Acyl_CoA_acyltransferase,HMMPfam_Acetyltransf_1"	-	no_errors
HCFC1	3054	broad.mit.edu	36	X	152875620	152875620	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	152875620	152875620	T	A	SNP	HCFC1	NM_005334	human	genbank	54_36p	-1	reviewed	missense	c.2439	p.K813N	1	NULL	"superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	-	no_errors
HCFC1	3054	broad.mit.edu	36	X	152889377	152889377	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	152889377	152889377	G	A	SNP	HCFC1	NM_005334	human	genbank	54_36p	-1	reviewed	missense	c.109	p.R37C	1	"HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain"	"HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2"	-	no_errors
IRAK1	3654	broad.mit.edu	36	X	152931859	152931859	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	152931859	152931859	C	T	SNP	IRAK1	NM_001569	human	genbank	54_36p	-1	reviewed	missense	c.1759	p.E587K	1	NULL	"superfamily_DEATH domain,HMMPfam_Death,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
TKTL1	8277	broad.mit.edu	36	X	153177534	153177534	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	153177534	153177534	G	A	SNP	TKTL1	NM_012253	human	genbank	54_36p	1	validated	missense	c.128	p.S43N	0.01	superfamily_Thiamin diphosphate-binding fold (THDP-binding)	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C"	-	no_errors
TKTL1	8277	broad.mit.edu	36	X	153194190	153194202	+	Frame_Shift_Del	DEL	AAATTAATTGAGA	-	AAATTAATTGAGA	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	AAATTAATTGAGA	AAATTAATTGAGA					Unknown	Unknown	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	X	153194190	153194202	AAATTAATTGAGA	-	DEL	TKTL1	NM_012253	human	genbank	54_36p	1	validated	frame_shift_del	c.736_748	p.K246fs	0.990:0.986:0.036:0.038:0.093:0.110:0.979:0.996:0.990:0.996:1.000:1.000:1.000	superfamily_Thiamin diphosphate-binding fold (THDP-binding)	"superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C"	"(deletion:cds_exon[153194125,153194318])"	no_errors
TKTL1	8277	broad.mit.edu	36	X	153202398	153202398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	153202398	153202398	G	C	SNP	TKTL1	NM_012253	human	genbank	54_36p	1	validated	missense	c.1130	p.G377A	0.95	"HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)"	"HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like,superfamily_Thiamin diphosphate-binding fold (THDP-binding)"	-	no_errors
TKTL1	8277	broad.mit.edu	36	X	153209201	153209201	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	153209201	153209201	C	G	SNP	TKTL1	NM_012253	human	genbank	54_36p	1	validated	missense	c.1472	p.A491G	0.53	"HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like"	"HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like,superfamily_Thiamin diphosphate-binding fold (THDP-binding)"	-	no_errors
FLNA	2316	broad.mit.edu	36	X	153246510	153246511	+	Missense_Mutation	DNP	TT	TT	CC	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	153246510	153246511	TT	CC	DNP	FLNA	NM_001456	human	genbank	54_36p	-1	reviewed	missense	c.1701_1700	p.E567G	1.000:1.000	"HMMPfam_Filamin,superfamily_E set domains,HMMSmart_SM00557"	"superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557"	-	no_errors
RPL10	6134	broad.mit.edu	36	X	153282294	153282294	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	153282294	153282294	A	C	SNP	RPL10	NM_006013	human	genbank	54_36p	1	reviewed	missense	c.550	p.M184L	1	NULL	"superfamily_Ribosomal protein L10e,HMMPfam_Ribosomal_L16,PatternScan_RIBOSOMAL_L10E"	-	no_errors
ATP6AP1	537	broad.mit.edu	36	X	153315772	153315772	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Broad454;Capture			Illumina GAIIx	X	153315772	153315772	G	T	SNP	ATP6AP1	NM_001183	human	genbank	54_36p	1	reviewed	missense	c.709	p.A237S	0.98	HMMPfam_ATP-synt_S1	HMMPfam_ATP-synt_S1	-	no_errors
ATP6AP1	537	broad.mit.edu	36	X	153316907	153316907	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	153316907	153316907	C	A	SNP	ATP6AP1	NM_001183	human	genbank	54_36p	1	reviewed	nonsense	c.1065	p.Y355*	0.64	HMMPfam_ATP-synt_S1	HMMPfam_ATP-synt_S1	-	no_errors
ATP6AP1	537	broad.mit.edu	36	X	153317328	153317328	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	X	153317328	153317328	T	C	SNP	ATP6AP1	NM_001183	human	genbank	54_36p	1	reviewed	missense	c.1310	p.L437P	1	HMMPfam_ATP-synt_S1	HMMPfam_ATP-synt_S1	-	no_errors
FAM50A	9130	broad.mit.edu	36	X	153331253	153331253	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	153331253	153331253	C	T	SNP	FAM50A	NM_004699	human	genbank	54_36p	1	provisional	silent	c.756	p.I252	1	HMMPfam_XAP5	HMMPfam_XAP5	-	no_errors
PLXNA3	55558	broad.mit.edu	36	X	153352653	153352653	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	153352653	153352653	G	A	SNP	PLXNA3	NM_017514	human	genbank	54_36p	1	validated	missense	c.5168	p.R1723H	1	"HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	"superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP"	-	no_errors
G6PD	2539	broad.mit.edu	36	X	153414085	153414085	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	153414085	153414085	C	A	SNP	G6PD	NM_000402	human	genbank	54_36p	-1	reviewed	missense	c.1268	p.R423L	1	"superfamily_SSF55347,HMMPfam_G6PD_C"	"superfamily_NAD(P)-bd,HMMPfam_G6PD_N,PatternScan_G6P_DEHYDROGENASE,superfamily_SSF55347,HMMPfam_G6PD_C"	-	no_errors
IKBKG	8517	broad.mit.edu	36	X	153423786	153423786	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	153423786	153423786	G	A	SNP	IKBKG	ENST00000369609	human	ensembl	54_36p	1	known	silent	c.114	p.E38	0	NULL	NULL	-	no_errors
CTAG2	30848	broad.mit.edu	36	X	153534019	153534019	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	153534019	153534019	G	T	SNP	CTAG2	NM_020994	human	genbank	54_36p	-1	validated	missense	c.350	p.P117H	0	HMMPfam_Pcc1	HMMPfam_Pcc1	-	no_errors
GAB3	139716	broad.mit.edu	36	X	153577485	153577485	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	A	A					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	X	153577485	153577485	A	T	SNP	GAB3	NM_001081573	human	genbank	54_36p	-1	reviewed	missense	c.1431	p.S477R	1	NULL	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	-	no_errors
GAB3	139716	broad.mit.edu	36	X	153597791	153597791	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	X	153597791	153597791	C	T	SNP	GAB3	NM_001081573	human	genbank	54_36p	-1	reviewed	missense	c.80	p.R27H	1	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	"HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like"	-	no_errors
F8	2157	broad.mit.edu	36	X	153810116	153810116	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	X	153810116	153810116	G	A	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	nonsense	c.5143	p.R1715*	0.99	superfamily_Cupredoxins	"superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2"	-	no_errors
F8	2157	broad.mit.edu	36	X	153880954	153880954	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	153880954	153880954	A	T	SNP	F8	NM_000132	human	genbank	54_36p	-1	reviewed	missense	c.259	p.W87R	0.99	superfamily_Cupredoxins	"HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3"	-	no_errors
BRCC3	79184	broad.mit.edu	36	X	153953096	153953096	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	X	153953096	153953096	G	A	SNP	BRCC3	NM_024332	human	genbank	54_36p	1	reviewed	missense	c.100	p.V34I	1	"HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232"	"HMMPfam_Mov34,superfamily_JAB1/MPN domain,HMMSmart_SM00232"	-	no_errors
TTN	7273	broad.mit.edu	36	2	179102045	179102045	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179102045	179102045	T	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.94622	p.K31541T	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179105808	179105808	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179105808	179105808	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.91723	p.R30575C	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179107331	179107331	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179107331	179107331	C	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.90200	p.R30067T	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179112913	179112913	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179112913	179112913	T	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	nonsense	c.86068	p.R28690*	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179123136	179123136	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179123136	179123136	T	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.79618	p.T26540S	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179133837	179133837	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	179133837	179133837	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.73211	p.R24404L	0.92	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179136181	179136181	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179136181	179136181	A	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.70867	p.Y23623H	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179137459	179137459	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2293-01A-01W-0799-08	TCGA-24-2293-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179137459	179137459	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.69589	p.R23197C	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179137488	179137488	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179137488	179137488	A	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.69560	p.I23187T	0.99	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179140781	179140781	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2095-01A-01W-0722-08	TCGA-61-2095-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179140781	179140781	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.66267	p.Q22089	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179141455	179141455	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	179141455	179141455	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.65593	p.E21865K	1	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179150626	179150626	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179150626	179150626	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.56716	p.I18906V	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179162150	179162150	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179162150	179162150	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.50491	p.A16831T	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179162257	179162257	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179162257	179162257	C	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.50384	p.R16795T	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179164298	179164298	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture;Sequenom			Illumina GAIIx	2	179164298	179164298	A	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.48343	p.S16115T	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179165469	179165469	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179165469	179165469	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.47452	p.P15818S	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179165786	179165786	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	179165786	179165786	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.47249	p.A15750V	1	"HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179184780	179184780	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179184780	179184780	A	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.38447	p.V12816G	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179193426	179193426	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179193426	179193426	T	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.34013	p.H11338P	1	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179193495	179193495	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179193495	179193495	T	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.33944	p.K11315M	1	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179205742	179205742	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	T	T					Unknown	Unknown	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	2	179205742	179205742	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.31182	p.T10394	0.93	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179218999	179218999	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179218999	179218999	G	A	SNP	TTN	ENST00000356127	human	ensembl	54_36p	-1	known	missense	c.2984	p.P995L	1	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,HMMPfam_I-set,HMMPfam_ig,PatternScan_FGGY_KINASES_1"	-	no_stop_codon
TTN	7273	broad.mit.edu	36	2	179225077	179225077	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	G	G					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	179225077	179225077	G	C	SNP	TTN	ENST00000356127	human	ensembl	54_36p	-1	known	missense	c.2371	p.P791A	1	NULL	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,HMMPfam_I-set,HMMPfam_ig,PatternScan_FGGY_KINASES_1"	-	no_stop_codon
TTN	7273	broad.mit.edu	36	2	179284993	179284993	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179284993	179284993	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.24077	p.N8026S	0.1	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179292396	179292396	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179292396	179292396	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.20234	p.R6745H	0.24	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179293907	179293907	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	WU-454;Capture			Illumina GAIIx	2	179293907	179293907	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.19352	p.A6451V	0.95	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179308659	179308659	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179308659	179308659	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.11027	p.T3676M	0.03	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179313133	179313133	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179313133	179313133	C	A	SNP	TTN	ENST00000359218	human	ensembl	54_36p	-1	known	nonsense	c.12364	p.E4122*	0.21	NULL	"PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,PatternScan_FGGY_KINASES_1"	-	no_stop_codon
TTN	7273	broad.mit.edu	36	2	179320116	179320117	+	Missense_Mutation	DNP	TG	TG	CT	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	2	179320116	179320117	TG	CT	DNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	missense	c.15256_15255	p.T5086A	1.000				
TTN	7273	broad.mit.edu	36	2	179320284	179320284	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	179320284	179320284	T	G	SNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	missense	c.15088	p.T5030P	0.1	NULL	"PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726"	-	no_errors
TTN	7273	broad.mit.edu	36	2	179320360	179320360	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179320360	179320360	G	A	SNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	silent	c.15012	p.D5004	0.83	NULL	"PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726"	-	no_errors
TTN	7273	broad.mit.edu	36	2	179320783	179320783	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture			Illumina GAIIx	2	179320783	179320783	A	T	SNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	silent	c.14589	p.V4863	0	NULL	"PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726"	-	no_errors
TTN	7273	broad.mit.edu	36	2	179330634	179330634	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179330634	179330634	C	A	SNP	TTN	ENST00000359218	human	ensembl	54_36p	-1	known	missense	c.10426	p.G3476C	1	"HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set"	"PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,PatternScan_FGGY_KINASES_1"	-	no_stop_codon
TTN	7273	broad.mit.edu	36	2	179337195	179337195	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179337195	179337195	A	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.10068	p.T3356	1	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179349789	179349789	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom;Capture;Sequenom			Illumina GAIIx	2	179349789	179349789	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	nonsense	c.5047	p.R1683*	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179357086	179357086	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179357086	179357086	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.2731	p.V911I	0.89	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	broad.mit.edu	36	2	179358642	179358642	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	179358642	179358642	G	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.2443	p.H815D	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179100092	179100100	+	In_Frame_Del	DEL	TCAGGGTTG	TCAGGGTTG	-	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	TCAGGGTTG	TCAGGGTTG	TCAGGGTTG	-	TCAGGGTTG	TCAGGGTTG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179100092	179100100	TCAGGGTTG	-	DEL	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	in_frame_del	c.95812_95804	p.TTL31935in_frame_del	1.000				
TTN	7273	genome.wustl.edu	36	2	179103710	179103710	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179103710	179103710	T	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.93821	p.K31274I	0.89	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179103896	179103896	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179103896	179103896	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.93635	p.P31212L	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179105686	179105686	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179105686	179105686	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.91845	p.P30615	0.99	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179105859	179105859	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179105859	179105859	G	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.91672	p.Q30558E	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179107066	179107066	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179107066	179107066	G	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.90465	p.V30155	0.98	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179115333	179115333	+	Missense_Mutation	SNP	C	C	T	rs55915651	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179115333	179115333	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.85339	p.E28447K	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179133251	179133251	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179133251	179133251	T	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.73797	p.G24599	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179139089	179139089	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179139089	179139089	C	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.67959	p.K22653N	1	"HMMSmart_SM00409,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179144336	179144336	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179144336	179144336	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.62712	p.D20904E	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179145912	179145912	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179145912	179145912	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.61136	p.R20379H	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179148835	179148835	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179148835	179148835	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.58213	p.K19405E	1	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179163234	179163234	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179163234	179163234	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.49407	p.V16469	0.64	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179166415	179166415	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179166415	179166415	G	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.46709	p.T15570R	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179172732	179172732	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179172732	179172732	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.44087	p.P14696L	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179174109	179174109	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179174109	179174109	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.43713	p.G14571	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179180493	179180493	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179180493	179180493	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.41113	p.V13705I	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179185371	179185371	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179185371	179185371	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.38072	p.K12691R	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179190353	179190355	+	In_Frame_Del	DEL	CTT	CTT	-	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179190353	179190355	CTT	-	DEL	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	in_frame_del	c.35650_35648	p.E11883in_frame_del	1.000				
TTN	7273	genome.wustl.edu	36	2	179193272	179193272	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179193272	179193272	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.34167	p.D11389	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179203266	179203266	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179203266	179203266	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.32174	p.G10725V	0.89	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179205590	179205590	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179205590	179205590	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.31334	p.S10445L	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179206827	179206827	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179206827	179206827	A	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.30590	p.V10197D	1	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179267628	179267628	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179267628	179267628	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.27637	p.I9213V	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179285426	179285426	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179285426	179285426	C	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.23736	p.Q7912H	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179287436	179287436	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179287436	179287436	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.22578	p.F7526	1	"HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179300650	179300650	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179300650	179300650	A	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.16168	p.Y5390D	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179300652	179300652	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179300652	179300652	A	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.16166	p.L5389R	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179309012	179309012	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179309012	179309012	C	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.10674	p.K3558N	0.99	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179313341	179313341	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179313341	179313341	C	A	SNP	TTN	ENST00000359218	human	ensembl	54_36p	-1	known	missense	c.12156	p.E4052D	1	NULL	"PatternScan_IG_MHC,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,PatternScan_FGGY_KINASES_1"	-	no_stop_codon
TTN	7273	genome.wustl.edu	36	2	179321800	179321800	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179321800	179321800	A	G	SNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	silent	c.13572	p.D4524	0	NULL	"superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS"	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179324089	179324089	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179324089	179324089	C	T	SNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	silent	c.11283	p.K3761	0	NULL	"PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726"	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179324750	179324750	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179324750	179324750	T	A	SNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	missense	c.10622	p.N3541I	0.93	"HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726"	"PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726"	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179341885	179341885	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179341885	179341885	G	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.8923	p.L2975V	1	"HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179348920	179348920	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179348920	179348920	T	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.5916	p.E1972D	0.98	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179350261	179350261	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179350261	179350261	A	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.4674	p.F1558L	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179351902	179351902	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	179351902	179351902	A	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.4152	p.A1384	0.98	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179107966	179107966	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	2	179107966	179107966	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.89565	p.N29855	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_Pkinase,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179134636	179134636	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture				SOLID	2	179134636	179134636	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.72412	p.P24138T	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179143360	179143360	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	179143360	179143360	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.63688	p.R21230S	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179178103	179178103	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	179178103	179178103	T	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.41992	p.I13998V	0.99	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179180565	179180565	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	179180565	179180565	G	A	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.41041	p.R13681C	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179188626	179188626	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	179188626	179188626	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.36393	p.M12131I	1	"superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179290639	179290639	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01A-01W-0490-10	TCGA-13-1408-10A-01W-0491-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	2	179290639	179290639	C	G	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.21475	p.D7159H	0.97	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179320766	179320766	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	179320766	179320766	G	T	SNP	TTN	ENST00000360870	human	ensembl	54_36p	-1	known	missense	c.14606	p.A4869D	0.01	NULL	"PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726"	-	no_errors
TTN	7273	hgsc.bcm.edu	36	2	179354220	179354220	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	2	179354220	179354220	G	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	nonsense	c.3396	p.Y1132*	1	"HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	213968176	213968176	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	1	213968176	213968176	T	C	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.11885	p.E3962G	1	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214030129	214030129	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214030129	214030129	A	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	nonsense	c.10077	p.C3359*	1	"HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214039056	214039056	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214039056	214039056	C	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	silent	c.9774	p.R3258	0.98	"HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214107136	214107136	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214107136	214107136	C	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	splice_site	c.8682-1	e43-1	1	-	-	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214210718	214210718	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214210718	214210718	A	G	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.6829	p.Y2277H	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214313107	214313107	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214313107	214313107	C	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.5731	p.G1911R	1	"HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214487150	214487150	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214487150	214487150	G	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	nonsense	c.2209	p.R737*	0.83	"HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	214658565	214658565	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	1	214658565	214658565	G	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.565	p.R189C	1	"HMMSmart_SM00560,superfamily_Concanavalin A-like lectins/glucanases"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	91725185	91725185	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	91725185	91725185	G	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.259	p.D87N	1	"superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	91725225	91725225	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	91725225	91725225	C	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.299	p.A100V	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	91725598	91725598	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	91725598	91725598	G	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.672	p.K224N	0.98	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	91725807	91725807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	91725807	91725807	C	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.881	p.A294V	0.66	superfamily_Cadherin-like	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92172134	92172134	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	92172134	92172134	A	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.6307	p.I2103F	1	"HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92172530	92172530	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	92172530	92172530	T	G	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.6703	p.F2235V	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92207751	92207751	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	92207751	92207751	C	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	silent	c.9939	p.A3313	0.95	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	genome.wustl.edu	36	11	92239912	92239912	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	11	92239912	92239912	G	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.12016	p.A4006T	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
RB1	5925	genome.wustl.edu	36	13	47853541	47853556	+	Frame_Shift_Del	DEL	ATGTGAACATCGAATC	ATGTGAACATCGAATC	-	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	ATGTGAACATCGAATC	ATGTGAACATCGAATC	ATGTGAACATCGAATC	-	ATGTGAACATCGAATC	ATGTGAACATCGAATC	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	13	47853541	47853556	ATGTGAACATCGAATC	-	DEL	RB1	NM_000321	human	genbank	54_36p	1	reviewed	frame_shift_del	c.1656_1671	p.C553fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000	"HMMPfam_RB_A,superfamily_Cyclin-like"	"HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C"	"(deletion:cds_exon[47853384,47853580])"	no_errors
RB1	5925	genome.wustl.edu	36	13	47931968	47931968	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	47931968	47931968	C	A	SNP	RB1	NM_000321	human	genbank	54_36p	1	reviewed	missense	c.2104	p.Q702K	1	"HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like"	"HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C"	-	no_errors
RB1	5925	genome.wustl.edu	36	13	47937375	47937375	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-10-0933-01A-01W-0421-09	TCGA-10-0933-11A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	47937375	47937375	C	T	SNP	RB1	NM_000321	human	genbank	54_36p	1	reviewed	nonsense	c.2359	p.R787*	1	HMMPfam_Rb_C	"HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C"	-	no_errors
RB1	5925	genome.wustl.edu	36	13	47937406	47937422	+	Frame_Shift_Del	DEL	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	-	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	-	TACGGATTCCTGGAGGG	TACGGATTCCTGGAGGG	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	13	47937406	47937422	TACGGATTCCTGGAGGG	-	DEL	RB1	NM_000321	human	genbank	54_36p	1	reviewed	frame_shift_del	c.2390_2406	p.L797fs	0.997:0.978:1.000:1.000:0.968:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.958:0.443:0.994:1.000:0.997	HMMPfam_Rb_C	"HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C"	"(deletion:cds_exon[47937342,47937505])"	no_errors
C9orf171	389799	genome.wustl.edu	36	9	134364726	134364726	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	134364726	134364726	C	T	SNP	C9orf171	NM_207417	human	genbank	54_36p	1	predicted	missense	c.550	p.R184C	0.98	NULL	NULL	-	no_errors
C9orf171	389799	genome.wustl.edu	36	9	134437680	134437680	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	134437680	134437680	C	A	SNP	C9orf171	NM_207417	human	genbank	54_36p	1	predicted	missense	c.925	p.Q309K	1	NULL	NULL	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26510201	26510219	+	Frame_Shift_Del	DEL	GATTATATTGGATACACTG	GATTATATTGGATACACTG	-	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	GATTATATTGGATACACTG	GATTATATTGGATACACTG	GATTATATTGGATACACTG	-	GATTATATTGGATACACTG	GATTATATTGGATACACTG	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26510201	26510219	GATTATATTGGATACACTG	-	DEL	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	frame_shift_del	c.252_270	p.I85fs	1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	"HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516"	"(deletion:cds_exon[26510154,26510237])"	no_errors
NF1	4763	genome.wustl.edu	36	17	26521136	26521136	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26521136	26521136	T	C	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	missense	c.581	p.L194P	1	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26686014	26686032	+	Frame_Shift_Del	DEL	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	-	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	-	ATGACTCCATGGCTGTCAA	ATGACTCCATGGCTGTCAA	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26686014	26686032	ATGACTCCATGGCTGTCAA	-	DEL	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	frame_shift_del	c.5845_5863	p.M1949fs	1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.993:0.953:1.000	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	"(deletion:cds_exon[26685982,26686175])"	no_errors
NF1	4763	genome.wustl.edu	36	17	26687915	26687916	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	-	-	-	T	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	26687915	26687916	-	T	INS	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	frame_shift_ins	c.6284_6285	p.V2096fs	1.000:0.997	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
CDK12	51755	genome.wustl.edu	36	17	34872213	34872214	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	34872213	34872214	CT	-	DEL	CRKRS	NM_016507	human	genbank	54_36p	1	validated	frame_shift_del	c.363_364	p.L122fs	0.061:0.049	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	"(deletion:cds_exon[34871851,34872896])"	no_errors
CDK12	51755	genome.wustl.edu	36	17	34921343	34921343	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	17	34921343	34921343	A	G	SNP	CRKRS	NM_016507	human	genbank	54_36p	1	validated	missense	c.2702	p.Y901C	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
BRCA1	672	genome.wustl.edu	36	17	38497279	38497280	+	Frame_Shift_Ins	INS	-	-	TT	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	-	-	-	TT	-	-	Unknown	Valid	Somatic	4	Capture	"454_PCR_WGA,Sanger_PCR_WGA"	1	dbGAP	Illumina GAIIx	17	38497279	38497280	-	TT	INS	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.3795_3794	p.N1265fs	0.024:0.006	NULL	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
BRCA1	672	genome.wustl.edu	36	17	38512070	38512070	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	PCR	454_PCR_WGA		dbGAP	ABI 3730xl	17	38512070	38512070	G	C	SNP	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	missense	c.141	p.C47W	1	"HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
ACBD4	79777	genome.wustl.edu	36	17	40569503	40569503	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	40569503	40569503	C	T	SNP	ACBD4	NM_024722	human	genbank	54_36p	1	reviewed	nonsense	c.199	p.R67*	0.77	"superfamily_ACBP,HMMPfam_ACBP"	"superfamily_ACBP,HMMPfam_ACBP,PatternScan_ACB_1"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01A-01W-0549-09	TCGA-13-1489-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7514728	7514728	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.1024	p.R342*	0.4	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7514728	7514728	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.1024	p.R342*	0.4	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7514755	7514755	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1497-01A-01W-0549-09	TCGA-13-1497-10A-01W-0549-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7514755	7514755	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.997	p.R333fs	0.03	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7514652,7514758])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7514759	7514759	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-13-1498-01A-01W-0549-09	TCGA-13-1498-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7514759	7514759	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.994-1	e9-1	1	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517577	7517577	+	Splice_Site	SNP	C	C	G	novel	Unknown	TCGA-24-1436-01A-01W-0549-09	TCGA-24-1436-10A-01W-0549-09	C	C					Verified	Unknown	Somatic	Phase_III	PCR	Sanger_PCR_WGA		dbGAP	ABI 3730xl	17	7517577	7517577	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.993+1	e8+1	0.99	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517583	7517583	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1509-01A-01W-0549-09	TCGA-13-1509-10A-01W-0550-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517583	7517583	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.988	p.L330fs	1	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7517578,7517651])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7517743	7517743	+	Splice_Site	SNP	C	T	T	novel	Unknown	TCGA-24-1103-01A-01W-0488-09	TCGA-24-1103-10A-01W-0488-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517743	7517743	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.919+1	e7+1	1	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1488-01A-01W-0549-09	TCGA-13-1488-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517747	7517747	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.916	p.R306*	1	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517747	7517747	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.916	p.R306*	1	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	A	A	rs28934574	Unknown	TCGA-24-1416-01A-01W-0549-09	TCGA-24-1416-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517824	7517824	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1482-01A-01W-0549-09	TCGA-13-1482-10A-01W-0549-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517824	7517824	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.839	p.R280I	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517833	7517833	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1411-01A-01W-0494-09	TCGA-13-1411-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517833	7517833	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.830	p.C277F	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517837	7517837	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0807-01B-02W-0421-09	TCGA-13-0807-10A-01W-0421-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517837	7517837	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.826	p.A276P	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517839	7517839	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0910-01A-01W-0421-09	TCGA-13-0910-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517839	7517839	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.824	p.C275Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517839	7517839	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1491-01A-01W-0549-09	TCGA-13-1491-10A-01W-0549-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517839	7517839	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.824	p.C275Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517842	7517842	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1463-01A-01W-0549-09	TCGA-24-1463-10A-01W-0549-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517842	7517842	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.821	p.V274D	0.99	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	A	A	rs28934576	Unknown	TCGA-13-0791-01A-01W-0372-09	TCGA-13-0791-10A-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517845	7517845	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273L	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	Unknown	TCGA-04-1542-01A-01W-0553-09	TCGA-04-1542-10A-01W-0553-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	Unknown	TCGA-13-0804-01A-01W-0372-09	TCGA-13-0804-10A-01W-0372-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	Unknown	TCGA-25-1315-01A-01W-0494-09	TCGA-25-1315-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1426-01A-01W-0549-09	TCGA-24-1426-10A-01W-0549-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.8	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	"454_PCR_WGA,Sanger_PCR_WGA"		dbGAP	Illumina GAIIx	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.8	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517849	7517849	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1427-01A-01W-0549-09	TCGA-24-1427-10A-01W-0549-09	C	C	C	-	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517849	7517849	C	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.814	p.V272fs	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7517744,7517880])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7517853	7517853	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517853	7517853	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.810	p.F270L	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517867	7517867	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1348-01A-01W-0494-09	TCGA-04-1348-11A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517867	7517867	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.796	p.G266R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517869	7517869	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	17	7517869	7517869	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.794	p.L265P	0.99	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517871	7517872	+	In_Frame_Ins	INS	-	-	AGATTACCACTACTC	novel	Unknown	TCGA-13-0765-01A-01W-0372-09	TCGA-13-0765-10A-01W-0372-09	-	-	-	AGATTACCACTACTC	-	-	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517871	7517872	-	AGATTACCACTACTC	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.792_791	p.265in_frame_insSSGNL	0.348:0.418	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518223	7518223	+	Splice_Site	SNP	C	T	T	novel	Unknown	TCGA-13-0912-01A-01W-0421-09	TCGA-13-0912-10A-01W-0421-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518223	7518223	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.782+1	e6+1	1	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518226	7518226	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	-	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518226	7518226	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.780	p.S261fs	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518224,7518333])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	Unknown	TCGA-13-1499-01A-01W-0549-09	TCGA-13-1499-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-04-1336-01A-01W-0488-09	TCGA-04-1336-11A-01W-0489-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518264	7518264	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248W	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0982-01A-01W-0488-09	TCGA-24-0982-10C-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518264	7518264	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248W	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518272	7518272	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-0966-01A-01W-0977-09	TCGA-24-0966-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518272	7518272	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.734	p.G245V	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518272	7518272	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0893-01B-01W-0494-09	TCGA-13-0893-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518272	7518272	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.734	p.G245D	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	A	A	rs28934573	Unknown	TCGA-04-1349-01A-01W-0494-09	TCGA-04-1349-11A-01W-0494-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518284	7518284	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.722	p.S241F	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518290	7518290	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518290	7518290	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.716	p.N239S	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518295	7518295	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1412-01A-01W-0494-09	TCGA-13-1412-10A-01W-0495-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518295	7518295	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.711	p.M237I	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518299	7518299	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-24-1616-01A-01W-0553-09	TCGA-24-1616-10A-01W-0553-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518299	7518299	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.707	p.Y236C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518305	7518305	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518305	7518305	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.701	p.Y234C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518305	7518305	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518305	7518305	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.701	p.Y234C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518324	7518325	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-24-1418-01A-01W-0549-09	TCGA-24-1418-10A-01W-0549-09	-	-	-	A	-	-	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518324	7518325	-	A	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.682_681	p.D227fs	0.998:0.801	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518334	7518334	+	Splice_Site	SNP	C	T	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518334	7518334	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.673-1	e6-1	0.99	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518928	7518928	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518928	7518928	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.646	p.V216M	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518929	7518929	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-04-1347-01A-01W-0488-09	TCGA-04-1347-11A-01W-0489-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518929	7518929	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.645	p.S215R	0.99	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0887-01A-01W-0421-09	TCGA-13-0887-10A-01W-0421-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518937	7518937	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.637	p.R213*	0.38	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518945	7518949	+	Frame_Shift_Del	DEL	TTTCT	TTTCT	-	novel	Unknown	TCGA-04-1343-01A-01W-0488-09	TCGA-04-1343-10A-01W-0489-09	TTTCT	TTTCT	TTTCT	-	TTTCT	TTTCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518945	7518949	TTTCT	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.629_625	p.R209fs	0.000:0.000:0.000:0.000:0.003	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518902,7519014])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7518960	7518960	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-0903-01A-01W-0421-09	TCGA-13-0903-10A-01W-0421-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518960	7518960	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.614	p.Y205C	0.97	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518960	7518960	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1322-01A-01W-0494-09	TCGA-25-1322-10A-01W-0494-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_III	PCR	454_PCR_WGA		dbGAP	ABI 3730xl	17	7518960	7518960	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.614	p.Y205C	0.97	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518982	7518982	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1413-01A-01W-0494-09	TCGA-24-1413-10A-01W-0495-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518982	7518982	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.592	p.E198*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1405-01A-01W-0494-09	TCGA-13-1405-10A-01W-0495-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518988	7518988	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.586	p.R196*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1563-01A-01W-0553-09	TCGA-24-1563-10A-01W-0553-09	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1424-01A-01W-0549-09	TCGA-24-1424-10A-01W-0549-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	G	G	novel	Unknown	TCGA-24-1469-01A-01W-0553-09	TCGA-24-1469-10A-01W-0553-09	A	A	G	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	T	T	novel	Unknown	TCGA-24-1428-01A-01W-0549-09	TCGA-24-1428-10A-01W-0549-09	A	A	T	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518990	7518990	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195N	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518996	7518996	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518996	7518996	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.578	p.H193R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518997	7518997	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0894-01B-01W-0494-09	TCGA-13-0894-10A-01W-0494-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518997	7518997	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.577	p.H193Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519015	7519015	+	Splice_Site	SNP	C	G	G	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519015	7519015	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.560-1	e5-1	0.38	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519113	7519113	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1332-01A-01W-0488-09	TCGA-04-1332-10A-01W-0489-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519113	7519113	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.542	p.R181P	0.97	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519119	7519119	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.536	p.H179R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519125	7519125	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1481-01A-01W-0549-09	TCGA-13-1481-10A-01W-0549-09	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519125	7519125	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.530	p.P177R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1404-01A-01W-0494-09	TCGA-13-1404-10A-01W-0495-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519128	7519128	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519128	7519128	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519156	7519157	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-24-0980-01A-01W-0421-09	TCGA-24-0980-10A-01W-0421-09	-	-	-	T	-	-	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519156	7519157	-	T	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.499_498	p.Q166fs	0.998:0.836	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519165	7519165	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-23-1022-01A-02W-0488-09	TCGA-23-1022-10A-01W-0488-09	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519165	7519165	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.490	p.K164E	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519179	7519179	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1021-01B-01W-0488-09	TCGA-23-1021-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519179	7519179	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.476	p.A159V	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519186	7519186	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.469	p.V157F	0.1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519188	7519188	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-23-1124-01A-01W-0488-09	TCGA-23-1124-10A-01W-0488-09	C	C	G	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519188	7519188	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.467	p.R156P	0.01	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519195	7519225	+	Frame_Shift_Del	DEL	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	-	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	-	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519195	7519225	CGGGCGGGGGTGTGGAATCAACCCACAGCTG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.460_430	p.Q144fs	0.496:0.001:0.001:0.001:0.001:0.996:0.998:0.906:0.998:0.997:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.014:0.987:0.994:0.947:0.886:0.843:0.860:0.979:0.970:0.987:0.998:1.000	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7519096,7519279])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7519204	7519204	+	Missense_Mutation	SNP	G	G	A	rs28934874	Unknown	TCGA-23-1118-01A-01W-0488-09	TCGA-23-1118-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519204	7519204	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.451	p.P151S	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519217	7519217	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0885-01A-02W-0421-09	TCGA-13-0885-10A-01W-0421-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519217	7519217	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.438	p.W146*	0.95	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519230	7519236	+	Frame_Shift_Del	DEL	GGGCAGG	GGGCAGG	-	novel	Unknown	TCGA-13-1507-01A-01W-0549-09	TCGA-13-1507-10A-01W-0550-09	GGGCAGG	GGGCAGG	GGGCAGG	-	GGGCAGG	GGGCAGG	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519230	7519236	GGGCAGG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.425_419	p.T140fs	0.999:1.000:1.000:1.000:1.000:0.996:1.000	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7519096,7519279])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7519251	7519251	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0795-01A-01W-0372-09	TCGA-13-0795-10A-01W-0372-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519251	7519251	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.404	p.C135Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519259	7519259	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-0366-01A-01W-0372-09	TCGA-09-0366-10B-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519259	7519259	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.396	p.K132N	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519260	7519260	+	Missense_Mutation	SNP	T	A	A	novel	Unknown	TCGA-13-0800-01A-01W-0372-09	TCGA-13-0800-10A-01W-0372-09	T	T	A	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519260	7519260	T	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.395	p.K132M	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519280	7519280	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-0890-01A-01W-0421-09	TCGA-13-0890-10A-01W-0421-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519280	7519280	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-1	e4-1	1	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520036	7520036	+	Splice_Site	SNP	C	A	A	novel	Unknown	TCGA-13-1403-01A-01W-0494-09	TCGA-13-1403-10A-01W-0495-09	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7520036	7520036	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.375+1	e3+1	1	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520037	7520037	+	Silent	SNP	C	C	A	rs55863639	Unknown	TCGA-13-0755-01A-01W-0372-09	TCGA-13-0755-10A-01W-0372-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7520037	7520037	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	silent	c.375	p.T125	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520114	7520114	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7520114	7520114	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.298	p.Q100*	0.6	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520317	7520317	+	Splice_Site	SNP	T	T	A	novel	Unknown	TCGA-24-1562-01A-01W-0553-09	TCGA-24-1562-10A-01W-0553-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7520317	7520317	T	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.97-2	e3-2	0.19	-	-	-	no_errors
LOC100130518	100130518	genome.wustl.edu	36	19	22290347	22290347	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1435-01A-01W-0549-09	TCGA-24-1435-10A-01W-0549-09	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	19	22290347	22290347	C	G	SNP	LOC100130518	XM_001719773	human	genbank	54_36p	1	model	missense	c.2405	p.T802S	0.96	superfamily_C2H2 and C2HC zinc fingers	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
GLI2	2736	genome.wustl.edu	36	2	121401446	121401446	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1346-01A-01W-0488-09	TCGA-04-1346-11A-01W-0489-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	121401446	121401446	C	T	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.188	p.P63L	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GLI2	2736	genome.wustl.edu	36	2	121458760	121458760	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0726-01A-01W-0372-09	TCGA-13-0726-10B-01W-0977-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	121458760	121458760	G	A	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.1927	p.V643I	0.69	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
GLI2	2736	genome.wustl.edu	36	2	121464516	121464516	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1117-01A-02W-0488-09	TCGA-23-1117-10A-01W-0488-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	121464516	121464516	G	A	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.4556	p.G1519D	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
FAM171B	165215	genome.wustl.edu	36	2	187335599	187335599	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1123-01A-01W-0488-09	TCGA-23-1123-10A-01W-0488-09	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	187335599	187335599	A	C	SNP	FAM171B	NM_177454	human	genbank	54_36p	1	validated	missense	c.2285	p.H762P	1	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FAM171B	165215	genome.wustl.edu	36	2	187335610	187335610	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0920-01A-01W-0421-09	TCGA-13-0920-10A-01W-0421-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	187335610	187335610	G	T	SNP	FAM171B	NM_177454	human	genbank	54_36p	1	validated	nonsense	c.2296	p.G766*	1	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FAM171B	165215	genome.wustl.edu	36	2	187335673	187335673	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1470-01A-01W-0553-09	TCGA-24-1470-10A-01W-0553-09	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	2	187335673	187335673	G	A	SNP	FAM171B	NM_177454	human	genbank	54_36p	1	validated	missense	c.2359	p.E787K	0.92	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
SON	6651	genome.wustl.edu	36	21	33848290	33848290	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0935-01A-03W-0421-09	TCGA-10-0935-11A-01W-0421-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	33848290	33848290	T	A	SNP	SON	NM_138927	human	genbank	54_36p	1	reviewed	missense	c.4883	p.V1628D	1	NULL	"HMMSmart_SM00443,HMMPfam_G-patch,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm"	-	no_errors
SON	6651	genome.wustl.edu	36	21	33848752	33848752	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1362-01A-01W-0494-09	TCGA-04-1362-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	33848752	33848752	C	T	SNP	SON	NM_138927	human	genbank	54_36p	1	reviewed	missense	c.5345	p.S1782F	0.93	NULL	"HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_dsrm,superfamily_dsRNA-binding domain-like"	-	no_errors
SON	6651	genome.wustl.edu	36	21	33854113	33854113	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0724-01A-01W-0372-09	TCGA-13-0724-10B-01W-0372-09	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	21	33854113	33854113	T	A	SNP	SON	NM_032195	human	genbank	54_36p	1	reviewed	missense	c.6718	p.L2240M	1	NULL	NULL	-	no_errors
LOC100130518	100130518	genome.wustl.edu	36	19	22291166	22291166	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	22291166	22291166	T	C	SNP	LOC100130518	XM_001719773	human	genbank	54_36p	1	model	missense	c.3224	p.M1075T	0	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	"superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2"	-	no_errors
LOC100130518	100130518	genome.wustl.edu	36	19	22291441	22291441	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-09-0369-01A-01W-0372-09	TCGA-09-0369-10C-01W-0372-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	19	22291441	22291441	G	T	SNP	LOC100130518	XM_001719773	human	genbank	54_36p	1	model	missense	c.3499	p.G1167W	1	superfamily_C2H2 and C2HC zinc fingers	"HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113392466	113392466	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1361-01A-01W-0494-09	TCGA-04-1361-11A-01W-0494-09	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	113392466	113392466	C	A	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.7802	p.R2601L	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10"	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113395848	113395848	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0760-01A-01W-0372-09	TCGA-13-0760-10A-01W-0372-09	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	113395848	113395848	A	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.7535	p.L2512H	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113433840	113433840	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0924-01A-01W-0421-09	TCGA-13-0924-10A-01W-0421-09	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	113433840	113433840	T	C	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.6236	p.D2079G	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113574057	113574057	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1104-01A-01W-0488-09	TCGA-24-1104-10A-01W-0488-09	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	113574057	113574057	G	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	silent	c.5115	p.G1705	0.9	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113632224	113632224	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1464-01A-01W-0549-09	TCGA-24-1464-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	113632224	113632224	C	G	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.4416	p.W1472C	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113655017	113655017	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1425-01A-02W-0553-09	TCGA-24-1425-10A-01W-0553-09	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	113655017	113655017	T	G	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.3931	p.T1311P	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113763936	113763936	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0884-01B-01W-0494-09	TCGA-13-0884-10A-01W-0494-09	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	8	113763936	113763936	C	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.2588	p.G863E	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
PRUNE2	158471	genome.wustl.edu	36	9	78512437	78512437	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1483-01A-01W-0549-09	TCGA-13-1483-10A-01W-0549-09	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	9	78512437	78512437	C	G	SNP	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	missense	c.3496	p.A1166P	0	NULL	"superfamily_Ferritin-like,superfamily_CRAL/TRIO domain,HMMSmart_SM00516"	-	no_errors
USH2A	7399	hgsc.bcm.edu	36	1	213968096	213968096	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	213968096	213968096	C	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.11965	p.E3989K	0.07	"superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	hgsc.bcm.edu	36	1	214030227	214030227	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	1	214030227	214030227	C	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.9979	p.D3327N	1	"HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	hgsc.bcm.edu	36	1	214078021	214078021	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	214078021	214078021	T	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.9306	p.Q3102H	1	superfamily_Fibronectin type III	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	hgsc.bcm.edu	36	1	214128690	214128690	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	214128690	214128690	T	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.7924	p.I2642L	0.97	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	hgsc.bcm.edu	36	1	214662006	214662006	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	1	214662006	214662006	G	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.296	p.A99V	0.02	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
FAM171B	165215	hgsc.bcm.edu	36	2	187334884	187334884	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	187334884	187334884	C	A	SNP	FAM171B	NM_177454	human	genbank	54_36p	1	validated	missense	c.1570	p.R524S	0.38	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FAM171B	165215	hgsc.bcm.edu	36	2	187335568	187335568	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	2	187335568	187335568	G	A	SNP	FAM171B	NM_177454	human	genbank	54_36p	1	validated	missense	c.2254	p.V752I	0.95	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
CSMD3	114788	hgsc.bcm.edu	36	8	113335707	113335707	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	8	113335707	113335707	T	G	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.10061	p.N3354T	1	"superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032"	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10"	-	no_errors
CSMD3	114788	hgsc.bcm.edu	36	8	113416804	113416804	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	113416804	113416804	A	C	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	silent	c.7095	p.T2365	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	hgsc.bcm.edu	36	8	113771362	113771362	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	8	113771362	113771362	T	A	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.2066	p.E689V	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	hgsc.bcm.edu	36	8	114057410	114057410	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	8	114057410	114057410	C	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.1174	p.E392K	1	NULL	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
C9orf171	389799	hgsc.bcm.edu	36	9	134364658	134364658	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	9	134364658	134364658	G	A	SNP	C9orf171	NM_207417	human	genbank	54_36p	1	predicted	missense	c.482	p.R161H	0.83	NULL	NULL	-	no_errors
FAT3	120114	hgsc.bcm.edu	36	11	92232077	92232077	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	92232077	92232077	A	G	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.11599	p.T3867A	1	"superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	hgsc.bcm.edu	36	11	92232098	92232098	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	11	92232098	92232098	A	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.11620	p.I3874L	1	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
RB1	5925	hgsc.bcm.edu	36	13	47849054	47849054	+	Splice_Site	SNP	G	G	C	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	13	47849054	47849054	G	C	SNP	RB1	NM_000321	human	genbank	54_36p	1	reviewed	splice_site	c.1216-1	e13-1	1	-	-	-	no_errors
BRCA1	672	hgsc.bcm.edu	36	17	38451310	38451310	+	Nonsense_Mutation	SNP	G	G	A	rs41293465	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	38451310	38451310	G	A	SNP	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	nonsense	c.5503	p.R1835*	0.99	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain"	-	no_errors
BRCA1	672	hgsc.bcm.edu	36	17	38482030	38482030	+	Splice_Site	DEL	C	C	-	novel	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	38482030	38482030	C	-	DEL	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	splice_site_del	c.4484+1	e12+1	0.91	-	-	"(deletion:intron[38480065,38482030])"	no_errors
BRCA1	672	hgsc.bcm.edu	36	17	38497425	38497426	+	Frame_Shift_Ins	INS	-	-	TAAGTTCT	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	38497425	38497426	-	TAAGTTCT	INS	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.3649_3648	p.S1216fs	0.226:0.007	NULL	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
BRCA1	672	hgsc.bcm.edu	36	17	38498636	38498636	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	38498636	38498636	C	-	DEL	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2438	p.G813fs	0	NULL	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	"(deletion:cds_exon[38496978,38500403])"	no_errors
BRCA1	672	hgsc.bcm.edu	36	17	38499517	38499517	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	38499517	38499517	C	-	DEL	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1557	p.A521fs	1	NULL	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	"(deletion:cds_exon[38496978,38500403])"	no_errors
BRCA1	672	hgsc.bcm.edu	36	17	38509760	38509760	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	38509760	38509760	C	A	SNP	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	nonsense	c.346	p.E116*	0.99	NULL	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
NF1	4763	hgsc.bcm.edu	36	17	26678704	26678707	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	TCTT	TCTT	TCTT	-	TCTT	TCTT	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	26678704	26678707	TCTT	-	DEL	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	frame_shift_del	c.5330_5333	p.F1778fs	1.000:1.000:1.000:1.000	NULL	"HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516"	"(deletion:cds_exon[26678643,26678983])"	no_errors
TOP2A	7153	hgsc.bcm.edu	36	17	35821134	35821134	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	35821134	35821134	G	C	SNP	TOP2A	NM_001067	human	genbank	54_36p	-1	reviewed	missense	c.1063	p.Q355E	1	"HMMSmart_SM00433,HMMPfam_DNA_gyraseB,superfamily_Ribosomal protein S5 domain 2-like"	###############################################################################################################################################################################################################################################################	-	no_errors
TOP2A	7153	hgsc.bcm.edu	36	17	35821465	35821465	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	35821465	35821465	G	C	SNP	TOP2A	NM_001067	human	genbank	54_36p	-1	reviewed	silent	c.921	p.G307	1	"HMMSmart_SM00433,HMMPfam_DNA_gyraseB,superfamily_Ribosomal protein S5 domain 2-like"	###############################################################################################################################################################################################################################################################	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7514743	7514743	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1571-01A-01W-0615-10	TCGA-36-1571-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7514743	7514743	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.1009	p.R337C	0.47	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517577	7517577	+	Splice_Site	SNP	C	C	A	rs11575997	Unknown	TCGA-10-0938-01A-02W-0419-10	TCGA-10-0938-11A-01W-0419-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7517577	7517577	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.993+1	e8+1	0.99	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517577	7517577	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-09-1669-01A-01W-0615-10	TCGA-09-1669-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7517577	7517577	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.993+1	e8+1	0.99	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517652	7517652	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1556-01A-01W-0615-10	TCGA-24-1556-10A-01W-0615-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7517652	7517652	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.920-1	e8-1	0.97	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517652	7517652	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-1604-01A-01W-0552-10	TCGA-24-1604-10A-01W-0552-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7517652	7517652	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.920-1	e8-1	0.97	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517783	7517783	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1659-01B-01W-0615-10	TCGA-09-1659-10A-01W-0616-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7517783	7517783	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.880	p.E294*	0.01	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517818	7517819	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1525-01A-01W-0615-10	TCGA-04-1525-10A-01W-0615-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7517818	7517819	-	G	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.845_844	p.R282fs	0.996:1.000	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-10-0937-01A-02W-0419-10	TCGA-10-0937-11A-01W-0419-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-24-1567-01A-01W-0615-10	TCGA-24-1567-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-25-1623-01A-01W-0615-10	TCGA-25-1623-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7517819	7517819	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.844	p.R282W	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517821	7517821	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1023-01A-03W-0484-10	TCGA-23-1023-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7517821	7517821	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.842	p.D281G	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-04-1530-01A-02W-0552-10	TCGA-04-1530-10A-01W-0552-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-13-0761-01A-01W-0370-10	TCGA-13-0761-10A-01W-0370-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-13-0900-01B-01W-0490-10	TCGA-13-0900-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-24-1558-01A-01W-0615-10	TCGA-24-1558-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-36-1575-01A-01W-0615-10	TCGA-36-1575-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-36-1578-01A-01W-0615-10	TCGA-36-1578-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01A-01W-0419-10	TCGA-13-0889-10A-01W-0419-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.8	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1580-01A-01W-0615-10	TCGA-36-1580-10A-01W-0615-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.8	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518231	7518231	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-09-1665-01B-01W-0615-10	TCGA-09-1665-11B-01W-0616-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518231	7518231	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.775	p.D259Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518231	7518231	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1635-01A-01W-0615-10	TCGA-25-1635-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518231	7518231	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.775	p.D259Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518257	7518257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1028-01A-01W-0484-10	TCGA-23-1028-10B-01W-0484-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7518257	7518257	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.749	p.P250L	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	T	T	rs11540652	byHapMap	TCGA-04-1364-01A-01W-0490-10	TCGA-04-1364-10A-01W-0490-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518263	7518264	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-36-1570-01A-01W-0615-10	TCGA-36-1570-10A-01W-0615-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518263	7518264	-	G	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.743_742	p.R248fs	1.000:1.000	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-25-1632-01A-01W-0615-10	TCGA-25-1632-10A-01W-0615-10	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518264	7518264	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248G	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518272	7518272	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1626-01A-01W-0615-10	TCGA-25-1626-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518272	7518272	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.734	p.G245V	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1317-01A-01W-0490-10	TCGA-25-1317-10A-01W-0490-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7518273	7518273	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.733	p.G245C	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	Unknown	TCGA-04-1338-01A-01W-0484-10	TCGA-04-1338-11A-01W-0485-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7518273	7518273	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.733	p.G245S	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	Unknown	TCGA-36-1568-01A-01W-0615-10	TCGA-36-1568-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7518273	7518273	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.733	p.G245S	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518276	7518276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1560-01A-01W-0615-10	TCGA-24-1560-10A-01W-0615-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518276	7518276	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.730	p.G244C	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1545-01A-01W-0615-10	TCGA-24-1545-10A-01W-0615-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518284	7518284	G	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.722	p.S241Y	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518291	7518292	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-0792-01A-01W-0370-10	TCGA-13-0792-10A-01W-0370-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7518291	7518292	-	A	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.715_714	p.N238fs	1.000:0.999	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518299	7518299	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-57-1582-01A-01W-0615-10	TCGA-57-1582-11A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518299	7518299	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.707	p.Y236C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518319	7518320	+	Frame_Shift_Del	DEL	AC	AC	-	novel	Unknown	TCGA-57-1583-01A-01W-0615-10	TCGA-57-1583-11A-01W-0615-10	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518319	7518320	AC	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.687_686	p.C229fs	0.995:0.995	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518224,7518333])"	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518901	7518901	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-36-1577-01A-01W-0615-10	TCGA-36-1577-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518901	7518901	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.672+1	e5+1	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1548-01A-01W-0615-10	TCGA-24-1548-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1553-01A-01W-0552-10	TCGA-24-1553-10A-01W-0552-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1627-01A-01W-0615-10	TCGA-25-1627-10A-01W-0615-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518928	7518928	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1625-01A-01W-0615-10	TCGA-25-1625-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	7518928	7518928	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.646	p.V216M	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518996	7518996	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0762-01A-01W-0370-10	TCGA-13-0762-10A-01W-0370-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7518996	7518996	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.578	p.H193R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518996	7518996	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0968-01A-01W-0484-10	TCGA-24-0968-10C-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7518996	7518996	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.578	p.H193R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519015	7519015	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-09-1661-01B-01W-0615-10	TCGA-09-1661-10A-01W-0616-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7519015	7519015	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.560-1	e5-1	0.38	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519118	7519118	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1555-01A-01W-0552-10	TCGA-24-1555-10A-01W-0552-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519118	7519118	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.537	p.H179Q	0.89	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-04-1350-01A-01W-0490-10	TCGA-04-1350-11A-01W-0490-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519119	7519119	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.536	p.H179R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519123	7519123	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0730-01A-01W-0370-10	TCGA-13-0730-10B-01W-0370-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519123	7519123	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.532	p.H178fs	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7519096,7519279])"	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-09-1662-01A-01W-0615-10	TCGA-09-1662-10A-01W-0616-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7519128	7519128	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-57-1584-01A-01W-0615-10	TCGA-57-1584-11A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7519128	7519128	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-25-1318-01A-01W-0490-10	TCGA-25-1318-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-25-1633-01A-01W-0615-10	TCGA-25-1633-10A-01W-0616-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519138	7519138	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01A-01W-0615-10	TCGA-25-1630-10A-01W-0615-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture				SOLID	17	7519138	7519138	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.517	p.V173L	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519179	7519179	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0720-01A-01W-0370-10	TCGA-13-0720-10B-01W-0370-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519179	7519179	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.476	p.A159V	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0919-01A-01W-0419-10	TCGA-13-0919-10A-01W-0419-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519186	7519186	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.469	p.V157F	0.1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1105-01A-01W-0484-10	TCGA-24-1105-10A-01W-0484-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519186	7519186	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.469	p.V157F	0.1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01A-01W-0552-10	TCGA-24-1614-10A-01W-0552-10	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA			SOLID	17	7519186	7519186	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.469	p.V157F	0.1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519252	7519252	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01A-01W-0484-10	TCGA-04-1337-11A-01W-0485-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519252	7519252	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.403	p.C135R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519255	7519255	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0906-01A-01W-0419-10	TCGA-13-0906-10A-01W-0419-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519255	7519255	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.400	p.F134V	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519260	7519260	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-23-1026-01B-01W-0484-10	TCGA-23-1026-10A-01W-0484-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7519260	7519260	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.395	p.K132R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519275	7519275	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0714-01A-01W-0370-10	TCGA-13-0714-10B-01W-0370-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519275	7519275	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.380	p.S127F	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519280	7519280	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-09-1666-01A-01W-0615-10	TCGA-09-1666-10A-01W-0616-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7519280	7519280	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-1	e4-1	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519280	7519280	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-04-1365-01A-01W-0490-10	TCGA-04-1365-10A-01W-0490-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519280	7519280	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-1	e4-1	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519280	7519280	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-25-1324-01A-01W-0490-10	TCGA-25-1324-10A-01W-0490-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519280	7519280	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-1	e4-1	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519281	7519281	+	Splice_Site	SNP	T	C	C	novel	Unknown	TCGA-04-1514-01A-01W-0552-10	TCGA-04-1514-10A-01W-0552-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7519281	7519281	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-2	e4-2	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7519281	7519281	+	Splice_Site	SNP	T	T	C	novel	Unknown	TCGA-24-1557-01A-01W-0615-10	TCGA-24-1557-10A-01W-0615-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7519281	7519281	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.376-2	e4-2	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520036	7520036	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-25-1631-01A-01W-0615-10	TCGA-25-1631-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7520036	7520036	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.375+1	e3+1	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520042	7520042	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0793-01A-01W-0370-10	TCGA-13-0793-10A-01W-0370-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	SOLID			SOLID	17	7520042	7520042	A	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.370	p.C124fs	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520086	7520086	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1407-01A-01W-0490-10	TCGA-13-1407-10A-01W-0491-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7520086	7520086	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.326	p.F109C	0.36	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520087	7520088	+	Frame_Shift_Ins	INS	-	-	ACCGT	novel	Unknown	TCGA-23-1024-01A-02W-0484-10	TCGA-23-1024-10A-01W-0484-10	-	-	-	ACCGT	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA			SOLID	17	7520087	7520088	-	ACCGT	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.325_324	p.F108fs	0.330:0.183	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520099	7520099	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-10-0928-01A-02W-0419-10	TCGA-10-0928-11A-01W-0419-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA			SOLID	17	7520099	7520099	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.313	p.G105S	0.73	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520219	7520219	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1517-01A-01W-0615-10	TCGA-04-1517-11A-01W-0615-10	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7520219	7520219	T	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.193	p.R65*	0	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520254	7520254	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1569-01A-01W-0615-10	TCGA-36-1569-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7520254	7520254	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.158	p.W53*	0.01	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520261	7520261	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1628-01A-01W-0615-10	TCGA-25-1628-10A-01W-0615-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_III	Capture	Sanger_PCR_WGA			SOLID	17	7520261	7520261	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.151	p.E51*	0	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
NBPF8	728841	broad.mit.edu	36	1	144073456	144073457	+	Intron	INS	-	C	-	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	1	144073456	144073457	-	C	INS	NBPF8	ENST00000369339	human	ensembl	54_36p	1	known	intronic	c.1670-5615_1670-5614	e14-5614	0.006:0.005	-	-	-	no_errors
USH2A	7399	broad.mit.edu	36	1	213874577	213874577	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	213874577	213874577	C	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	silent	c.15144	p.A5048	0	NULL	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	213914970	213914970	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-09-2056-01B-01W-0722-08	TCGA-09-2056-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	213914970	213914970	C	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	silent	c.12906	p.R4302	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	213915145	213915145	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina GAIIx	1	213915145	213915145	T	C	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.12731	p.N4244S	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	213998688	213998688	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	213998688	213998688	C	G	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.11261	p.G3754A	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	214118802	214118802	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	214118802	214118802	C	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.8485	p.V2829L	0.56	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	214128935	214128935	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	214128935	214128935	T	C	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.7679	p.N2560S	1	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	214323453	214323453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	214323453	214323453	C	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.5266	p.V1756I	0.73	"HMMSmart_SM00282,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	214447291	214447291	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	214447291	214447291	C	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.3263	p.S1088N	0.24	"HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	214564266	214564266	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	214564266	214564266	T	A	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.1195	p.I399F	1	"HMMPfam_Laminin_N,HMMSmart_SM00136"	###############################################################################################################################################################################################################################################################	-	no_errors
USH2A	7399	broad.mit.edu	36	1	214661887	214661887	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	1	214661887	214661887	G	T	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.415	p.P139T	1	superfamily_Concanavalin A-like lectins/glucanases	###############################################################################################################################################################################################################################################################	-	no_errors
GLI2	2736	broad.mit.edu	36	2	121425309	121425309	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	121425309	121425309	G	A	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.275	p.S92N	1	NULL	"superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1"	-	no_errors
GLI2	2736	broad.mit.edu	36	2	121444566	121444566	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	121444566	121444566	G	T	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.973	p.A325S	0.51	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
GLI2	2736	broad.mit.edu	36	2	121452516	121452516	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	121452516	121452516	G	C	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.1405	p.E469Q	1	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
GLI2	2736	broad.mit.edu	36	2	121464405	121464405	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	2	121464405	121464405	G	T	SNP	GLI2	NM_005270	human	genbank	54_36p	1	reviewed	missense	c.4445	p.S1482I	0.75	NULL	"HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers"	-	no_errors
FAM171B	165215	broad.mit.edu	36	2	187324232	187324232	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Capture,Sequenom"			Illumina GAIIx	2	187324232	187324232	G	C	SNP	FAM171B	NM_177454	human	genbank	54_36p	1	validated	missense	c.851	p.S284T	0.01	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
TBP	6908	broad.mit.edu	36	6	170712963	170712965	+	In_Frame_Del	DEL	CAA	-	-	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	CAA	CAA	-	-	CAA	CAA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	6	170712963	170712965	CAA	-	DEL	TBP	NM_003194	human	genbank	54_36p	1	reviewed	in_frame_del	c.214_216	p.Q75in_frame_del	0.822:0.830:0.838	NULL	"HMMPfam_TBP,PatternScan_TFIID,superfamily_TFIID_C/glycos_N"	"(deletion:cds_exon[170712804,170713246])"	no_errors
CSMD3	114788	broad.mit.edu	36	8	113346991	113346991	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	113346991	113346991	G	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	silent	c.9513	p.I3171	1	superfamily_Complement control module/SCR domain	"superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113373014	113373014	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	113373014	113373014	C	A	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.8875	p.V2959L	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113383345	113383345	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	113383345	113383345	G	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.8293	p.P2765T	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113395965	113395965	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	113395965	113395965	C	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.7418	p.G2473E	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113427578	113427578	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	113427578	113427578	G	C	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.6366	p.I2122M	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113461831	113461831	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	8	113461831	113461831	G	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.6062	p.T2021K	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113472187	113472187	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	8	113472187	113472187	C	G	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.5816	p.C1939S	1	"HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113488085	113488085	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	113488085	113488085	T	A	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	nonsense	c.5653	p.R1885*	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113638303	113638303	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	8	113638303	113638303	T	A	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.4099	p.S1367C	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	113731645	113731646	+	Missense_Mutation	DNP	TG	TG	AT	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	TG	TG	TG	AT	TG	TG	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	8	113731645	113731646	TG	AT	DNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.3114_3113	p.S1038Y	0.970:1.000	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
CSMD3	114788	broad.mit.edu	36	8	114255270	114255270	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	8	114255270	114255270	A	G	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.566	p.L189S	1	"HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain"	"HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain"	-	no_errors
PRUNE2	158471	broad.mit.edu	36	9	78460151	78460161	+	Splice_Site	DEL	GCTCTCACCAG	-	GCTCTCACCAG	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	GCTCTCACCAG	GCTCTCACCAG	GCTCTCACCAG	-	GCTCTCACCAG	GCTCTCACCAG	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	9	78460151	78460161	GCTCTCACCAG	-	DEL	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	splice_site_del	c.7279+4_7279+1	e4-1	0.000:0.030:0.201:0.980:0.997:0.997:1.000:1.000:1.000:0.997:1.000	-	-	"(deletion:intron[78457420,78460158], cds_exon[78460159,78460238])"	no_errors
PRUNE2	158471	broad.mit.edu	36	9	78510558	78510558	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	78510558	78510558	C	T	SNP	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	missense	c.5375	p.R1792Q	0	NULL	"superfamily_Ferritin-like,superfamily_CRAL/TRIO domain,HMMSmart_SM00516"	-	no_errors
PRUNE2	158471	broad.mit.edu	36	9	78511811	78511811	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	9	78511811	78511811	C	G	SNP	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	missense	c.4122	p.K1374N	0	NULL	"HMMSmart_SM00516,superfamily_CRAL/TRIO domain,superfamily_Ferritin-like"	-	no_errors
PRUNE2	158471	broad.mit.edu	36	9	78514606	78514606	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	78514606	78514606	C	A	SNP	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	missense	c.1327	p.A443S	0.96	NULL	"HMMSmart_SM00516,superfamily_CRAL/TRIO domain,superfamily_Ferritin-like"	-	no_errors
C9orf171	389799	broad.mit.edu	36	9	134408211	134408211	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	9	134408211	134408211	C	A	SNP	C9orf171	NM_207417	human	genbank	54_36p	1	predicted	missense	c.796	p.P266T	0.85	NULL	NULL	-	no_errors
PAOX	196743	broad.mit.edu	36	10	135043934	135043934	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	10	135043934	135043934	T	C	SNP	PAOX	NM_152911	human	genbank	54_36p	1	validated	missense	c.623	p.F208S	0.97	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase"	"superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain"	-	no_errors
FAT3	120114	broad.mit.edu	36	11	91726643	91726643	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	11	91726643	91726643	G	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.1717	p.D573N	1	"HMMSmart_SM00112,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	91727199	91727199	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	11	91727199	91727199	A	G	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.2273	p.N758S	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	91727535	91727535	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	T	T	G	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	11	91727535	91727535	T	G	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.2609	p.V870G	1	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	92070253	92070254	+	Missense_Mutation	DNP	TC	TC	CA	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	11	92070253	92070254	TC	CA	DNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.3663_3664	p.L1222M	1.000:1.000	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	92134759	92134759	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	11	92134759	92134759	G	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.3759	p.Q1253H	1	"superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	92134777	92134777	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	11	92134777	92134777	C	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	nonsense	c.3777	p.Y1259*	1	"HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	92171110	92171110	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	11	92171110	92171110	T	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.5283	p.D1761E	1	"HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	92174160	92174160	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	11	92174160	92174160	C	G	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.8333	p.A2778G	0.21	"HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	92216961	92216961	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	11	92216961	92216961	A	T	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.10780	p.S3594C	1	"HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like"	###############################################################################################################################################################################################################################################################	-	no_errors
FAT3	120114	broad.mit.edu	36	11	92239718	92239718	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	11	92239718	92239718	G	A	SNP	FAT3	NM_001008781	human	genbank	54_36p	1	validated	missense	c.11822	p.R3941H	1	"HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2"	###############################################################################################################################################################################################################################################################	-	no_errors
RASAL1	8437	broad.mit.edu	36	12	112026390	112026390	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C					Unknown	Unknown	Somatic	Phase_I	Capture	---			Illumina GAIIx	12	112026390	112026390	C	T	SNP	RASAL1	NM_004658	human	genbank	54_36p	-1	reviewed	missense	c.1924	p.D642N	0.86	"superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233"	###############################################################################################################################################################################################################################################################	-	no_errors
RASAL1	8437	broad.mit.edu	36	12	112050340	112050340	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	112050340	112050340	C	A	SNP	RASAL1	NM_004658	human	genbank	54_36p	-1	reviewed	missense	c.149	p.G50V	1	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	###############################################################################################################################################################################################################################################################	-	no_errors
RASAL1	8437	broad.mit.edu	36	12	112053104	112053104	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	12	112053104	112053104	G	A	SNP	RASAL1	NM_004658	human	genbank	54_36p	-1	reviewed	silent	c.91	p.L31	0.99	"HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)"	###############################################################################################################################################################################################################################################################	-	no_errors
RB1	5925	broad.mit.edu	36	13	47839649	47839649	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	13	47839649	47839649	C	T	SNP	RB1	NM_000321	human	genbank	54_36p	1	reviewed	nonsense	c.958	p.R320*	1	NULL	"HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7514709	7514710	+	Frame_Shift_Ins	INS	-	-	AGGCCTT	novel	Unknown	TCGA-13-0751-01A-01D	TCGA-13-0751-10A-01D	-	-	AGGCCTT	AGGCCTT	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7514709	7514710	-	AGGCCTT	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1043_1042	p.L348fs	0.992:0.323	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7514720	7514720	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1434-01A-01W	TCGA-24-1434-10A-01W	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7514720	7514720	C	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1032	p.N345fs	0.72	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7514652,7514758])"	no_errors
TP53	7157	broad.mit.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2097-01A-02W-0722-08	TCGA-61-2097-11A-01W-0723-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7514728	7514728	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.1024	p.R342*	0.4	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517577	7517577	+	Splice_Site	SNP	C	C	T	rs11575997	Unknown	TCGA-23-2072-01A-01W-0722-08	TCGA-23-2072-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517577	7517577	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.993+1	e8+1	0.99	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517577	7517577	+	Splice_Site	SNP	C	C	A	rs11575997	Unknown	TCGA-59-2355-01A-01W-0799-08	TCGA-59-2355-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517577	7517577	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.993+1	e8+1	0.99	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517610	7517610	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2271-01A-01W-0799-08	TCGA-24-2271-10A-01W-0799-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517610	7517610	T	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.961	p.K321*	0.98	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517622	7517622	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture,Sequenom"			Illumina GAIIx	17	7517622	7517622	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.949	p.Q317*	0.55	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517625	7517626	+	Frame_Shift_Ins	INS	-	A	A	novel	Unknown	TCGA-24-1603-01A-01W	TCGA-24-1603-10A-01W	-	-	A	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7517625	7517626	-	A	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.946_945	p.P315fs	0.962:0.964	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517744	7517745	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-61-2109-01A-01W-0722-08	TCGA-61-2109-11A-01W-0723-08	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7517744	7517745	CT	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.919_918	p.A307fs	0.998:0.997	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7517744,7517880])"	no_errors
TP53	7157	broad.mit.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517747	7517747	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.916	p.R306*	1	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517807	7517807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1326-01A-01W	TCGA-25-1326-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Broad454,Capture"			Illumina GAIIx	17	7517807	7517807	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.856	p.E286K	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517813	7517813	+	Frame_Shift_Del	DEL	T	-	T	novel	Unknown	TCGA-24-2267-01A-01W-0799-08	TCGA-24-2267-11A-01W-0799-08	T	T	-	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7517813	7517813	T	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.850	p.T284fs	0.04	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7517744,7517880])"	no_errors
TP53	7157	broad.mit.edu	36	17	7517827	7517827	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0904-01A-02W	TCGA-13-0904-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517827	7517827	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.836	p.G279E	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0913-01A-01W	TCGA-13-0913-10A-01D	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517830	7517830	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.833	p.P278R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1552-01A-01W	TCGA-24-1552-10A-01W	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Broad454,Capture"			Illumina GAIIx	17	7517830	7517830	G	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.833	p.P278H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517842	7517842	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2290-01A-01W-0799-08	TCGA-24-2290-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517842	7517842	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.821	p.V274G	0.99	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	A	rs28934576	Unknown	TCGA-13-1512-01A-01W	TCGA-13-1512-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517845	7517845	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273L	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"WU-454,Capture"			Illumina GAIIx	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	G	rs28934576	Unknown	TCGA-13-0905-01B-01W	TCGA-13-0905-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517845	7517845	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273P	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.8	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2348-01A-01W-0799-08	TCGA-59-2348-11A-01W-0800-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.8	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1321-01A-01W	TCGA-25-1321-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517846	7517846	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.817	p.R273C	0.8	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517849	7517849	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0886-01A-01W	TCGA-13-0886-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517849	7517849	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.814	p.V272M	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517849	7517849	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2024-01A-02W-0722-08	TCGA-24-2024-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517849	7517849	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.814	p.V272M	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517852	7517852	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1471-01A-01W	TCGA-24-1471-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7517852	7517852	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.811	p.E271*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517866	7517866	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2113-01A-01W-0722-08	TCGA-61-2113-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517866	7517866	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.797	p.G266V	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517866	7517866	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2352-01A-01W-0799-08	TCGA-59-2352-10A-01W-0800-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517866	7517866	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.797	p.G266V	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517867	7517867	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2102-01A-01W-0722-08	TCGA-61-2102-11A-01W-0723-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517867	7517867	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.796	p.G266R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517871	7517881	+	Splice_Site	DEL	TAGATTACCAC	TAGATTACCAC	-	novel	Unknown	TCGA-23-1116-01A-01W	TCGA-23-1116-10A-01W	TAGATTACCAC	TAGATTACCAC	-	-	TAGATTACCAC	TAGATTACCAC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7517871	7517881	TAGATTACCAC	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site_del	c.792_783	p.G262fs	0.348:0.418:0.272:0.006:0.011:0.018:0.004:0.996:1.000:0.996	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7517744,7517880], intron[7517881,7518223])"	no_errors
TP53	7157	broad.mit.edu	36	17	7517878	7517878	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-2081-01A-01W-0722-08	TCGA-23-2081-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7517878	7517878	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.785	p.G262V	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518223	7518223	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-1409-01A-01W	TCGA-13-1409-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"WU-454,Capture"			Illumina GAIIx	17	7518223	7518223	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.782+1	e6+1	1	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518236	7518236	+	Missense_Mutation	SNP	A	A	T	rs28934577	Unknown	TCGA-09-2050-01A-01W-0799-08	TCGA-09-2050-10A-01W-0799-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518236	7518236	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.770	p.L257Q	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518239	7518241	+	In_Frame_Del	DEL	GTG	-	GTG	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	GTG	GTG	-	-	GTG	GTG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7518239	7518241	GTG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.767_765	p.T256in_frame_del	1.000:1.000:1.000	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518224,7518333])"	no_errors
TP53	7157	broad.mit.edu	36	17	7518239	7518247	+	In_Frame_Del	DEL	GTGATGATG	GTGATGATG	-	novel	Unknown	TCGA-23-1031-01A-01W	TCGA-23-1031-10A-01W	GTGATGATG	GTGATGATG	-	-	GTGATGATG	GTGATGATG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7518239	7518247	GTGATGATG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.767_759	p.IIT254in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518224,7518333])"	no_errors
TP53	7157	broad.mit.edu	36	17	7518254	7518254	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1504-01A-01W	TCGA-13-1504-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518254	7518254	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.752	p.I251S	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518257	7518257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2288-01A-01W-0799-08	TCGA-24-2288-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	7518257	7518257	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.749	p.P250L	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518261	7518261	+	Missense_Mutation	SNP	T	T	C	rs67185453	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518261	7518261	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.745	p.R249G	0.99	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	by-hapmap	TCGA-24-0979-01A-01W	TCGA-24-0979-10B-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"WU-454,Capture"			Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	by-hapmap	TCGA-24-1419-01A-01W	TCGA-24-1419-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"WU-454,Capture"			Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	by-hapmap	TCGA-23-1032-01A-02W	TCGA-23-1032-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	by-hapmap	TCGA-13-1496-01A-01W	TCGA-13-1496-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	by-hapmap	TCGA-10-0934-01A-02W	TCGA-10-0934-11A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"WU-454,Capture"			Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	by-hapmap	TCGA-57-1993-01A-01W-0699-08	TCGA-57-1993-11A-01W-0700-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	by-hapmap	TCGA-24-2260-01A-01W-0722-08	TCGA-24-2260-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518263	7518263	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.743	p.R248Q	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-2409-01A-01W-0799-08	TCGA-25-2409-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518264	7518264	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248W	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1422-01A-01W	TCGA-24-1422-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518264	7518264	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248W	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1551-01A-01W	TCGA-24-1551-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518264	7518264	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248W	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518272	7518272	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-30-1853-01A-02W-0699-08	TCGA-30-1853-10A-01W-0699-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518272	7518272	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.734	p.G245D	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	G	rs28934575	Unknown	TCGA-61-1736-01B-01W-0722-08	TCGA-61-1736-11A-01W-0722-08	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518273	7518273	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.733	p.G245R	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	Unknown	TCGA-09-2049-01D-01W-0799-08	TCGA-09-2049-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518273	7518273	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.733	p.G245S	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518275	7518275	+	Missense_Mutation	SNP	C	C	T	rs28934572	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518275	7518275	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.731	p.G244D	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518276	7518276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01A-01W-0722-08	TCGA-61-2111-11A-01W-0723-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518276	7518276	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.730	p.G244C	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	G	A	rs28934573	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518284	7518284	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.722	p.S241F	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	G	A	rs28934573	Unknown	TCGA-24-2254-01A-01W-0722-08	TCGA-24-2254-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518284	7518284	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.722	p.S241F	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518284	7518284	+	Missense_Mutation	SNP	G	G	A	rs28934573	Unknown	TCGA-20-0991-01A-03D	TCGA-20-0991-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518284	7518284	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.722	p.S241F	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518288	7518296	+	In_Frame_Del	DEL	TGTTACACA	TGTTACACA	-	novel	Unknown	TCGA-61-2088-01A-01W-0722-08	TCGA-61-2088-11A-01W-0722-08	TGTTACACA	TGTTACACA	TGTTACACA	-	TGTTACACA	TGTTACACA	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518288	7518296	TGTTACACA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.718_710	p.MCN237in_frame_del	1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518224,7518333])"	no_errors
TP53	7157	broad.mit.edu	36	17	7518291	7518292	+	Frame_Shift_Ins	INS	-	A	-	novel	Unknown	TCGA-13-0883-01A-02W	TCGA-13-0883-10A-01D	-	-	A	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7518291	7518292	-	A	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.715_714	p.N238fs	1.000:0.999	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518293	7518293	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-1995-01A-01W-0722-08	TCGA-61-1995-11A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518293	7518293	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.713	p.C238Y	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518293	7518293	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-31-1959-01A-01W-0699-08	TCGA-31-1959-10A-01W-0700-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518293	7518293	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.713	p.C238F	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518296	7518296	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1487-01A-01D	TCGA-13-1487-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518296	7518296	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.710	p.M237K	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518306	7518306	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1484-01A-01W	TCGA-13-1484-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518306	7518306	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.700	p.Y234N	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518311	7518311	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2019-01A-02W-0722-08	TCGA-24-2019-10A-01W-0722-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518311	7518311	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.695	p.I232N	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518901	7518901	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518901	7518901	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.672+1	e5+1	1	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518901	7518901	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-25-2400-01A-01W-0799-08	TCGA-25-2400-10A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518901	7518901	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.672+1	e5+1	1	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518902	7518902	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-2042-01A-01W-0799-08	TCGA-25-2042-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Capture,Sanger_PCR_WGA"			Illumina GAIIx	17	7518902	7518902	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	silent	c.672	p.E224	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518904	7518905	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	CA	CA	-	-	CA	CA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7518904	7518905	CA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.670_669	p.E224fs	0.994:0.551	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518902,7519014])"	no_errors
TP53	7157	broad.mit.edu	36	17	7518907	7518908	+	Frame_Shift_Del	DEL	GC	GC	-	novel	Unknown	TCGA-09-2051-01A-01W-0799-08	TCGA-09-2051-10A-01W-0799-08	GC	GC	GC	-	GC	GC	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518907	7518908	GC	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.667_666	p.P223fs	0.989:0.734	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518902,7519014])"	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01A-01W-0799-08	TCGA-59-2350-11A-01W-0800-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1319-01A-01W	TCGA-25-1319-10A-01W	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Broad454,Sequenom,Capture"			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-1728-01A-01W-0699-08	TCGA-61-1728-11A-01W-0700-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518929	7518929	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-61-1998-01A-01W-0722-08	TCGA-61-1998-10A-01W-0722-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518929	7518929	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.645	p.S215R	0.99	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518933	7518933	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-2404-01A-01W-0799-08	TCGA-25-2404-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518933	7518933	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.641	p.H214R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518951	7518951	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2092-01A-01W-0722-08	TCGA-61-2092-11A-01W-0722-08	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7518951	7518951	T	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.623	p.D208V	0.99	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518964	7518964	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2016-01A-01W-0722-08	TCGA-61-2016-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518964	7518964	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.610	p.E204*	0.4	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518964	7518964	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2002-01A-01W-0722-08	TCGA-61-2002-11A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518964	7518964	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.610	p.E204*	0.4	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2289-01A-01W-0799-08	TCGA-24-2289-10A-01W-0799-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	7518988	7518988	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.586	p.R196*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0916-01A-01W	TCGA-13-0916-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518988	7518988	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.586	p.R196*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-2396-01A-01W-0799-08	TCGA-25-2396-10A-01W-0799-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-31-1950-01A-01W-0699-08	TCGA-31-1950-10A-01W-0699-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-1919-01A-01W-0699-08	TCGA-61-1919-11A-01W-0700-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518990	7518990	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.584	p.I195T	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518991	7518991	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518991	7518991	T	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.583	p.I195F	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518991	7519015	+	Splice_Site	DEL	TAAGATGCTGAGGAGGGGCCAGACC	-	TAAGATGCTGAGGAGGGGCCAGACC	novel	Unknown	TCGA-09-2044-01B-01W-0799-08	TCGA-09-2044-10A-01W-0799-08	TAAGATGCTGAGGAGGGGCCAGACC	TAAGATGCTGAGGAGGGGCCAGACC	-	-	TAAGATGCTGAGGAGGGGCCAGACC	TAAGATGCTGAGGAGGGGCCAGACC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7518991	7519015	TAAGATGCTGAGGAGGGGCCAGACC	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site_del	c.583_560	p.G187fs	1.000:0.987:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.998:0.999:0.987:0.923:0.995:0.997:0.888:0.996:0.996:0.816:0.467:0.381:0.265:0.331	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518902,7519014], intron[7519015,7519095])"	no_errors
TP53	7157	broad.mit.edu	36	17	7518993	7518993	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-30-1891-01A-01W-0699-08	TCGA-30-1891-10A-01W-0699-08	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518993	7518993	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.581	p.L194R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518993	7518993	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-2401-01A-01W-0799-08	TCGA-25-2401-10A-01W-0799-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7518993	7518993	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.581	p.L194R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519000	7519000	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1474-01A-01W	TCGA-24-1474-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519000	7519000	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.574	p.Q192*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519000	7519002	+	In_Frame_Del	DEL	GAG	GAG	-	novel	Unknown	TCGA-24-1423-01A-01W	TCGA-24-1423-10A-01W	GAG	GAG	-	-	GAG	GAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7519000	7519002	GAG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.574_572	p.P191in_frame_del	1.000:0.998:0.999	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518902,7519014])"	no_errors
TP53	7157	broad.mit.edu	36	17	7519000	7519002	+	In_Frame_Del	DEL	GAG	GAG	-	novel	Unknown	TCGA-24-0975-01B-02W	TCGA-24-0975-10B-01W	GAG	GAG	GAG	-	GAG	GAG	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7519000	7519002	GAG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.574_572	p.P191in_frame_del	1.000:0.998:0.999	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518902,7519014])"	no_errors
TP53	7157	broad.mit.edu	36	17	7519015	7519015	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-0970-01B-01W	TCGA-24-0970-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture,Sequenom"			Illumina GAIIx	17	7519015	7519015	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.560-1	e5-1	0.38	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519094	7519094	+	Splice_Site	SNP	A	A	C	novel	Unknown	TCGA-13-0923-01A-01W	TCGA-13-0923-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519094	7519094	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.559+2	e4+2	0.99	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519095	7519095	+	Splice_Site	SNP	C	C	T	novel	Unknown	TCGA-24-2030-01A-01W-0722-08	TCGA-24-2030-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7519095	7519095	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.559+1	e4+1	1	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519095	7519095	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-24-1564-01A-01W	TCGA-24-1564-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519095	7519095	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.559+1	e4+1	1	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519095	7519095	+	Splice_Site	SNP	C	C	A	novel	Unknown	TCGA-13-1492-01A-01D	TCGA-13-1492-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519095	7519095	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.559+1	e4+1	1	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01A-01W-0799-08	TCGA-13-2060-10A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7519119	7519119	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.536	p.H179R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2045-01A-01W-0799-08	TCGA-09-2045-11A-01W-0799-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7519119	7519119	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.536	p.H179R	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1110-01A-01D	TCGA-23-1110-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7519128	7519128	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.527	p.C176Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-23-1122-01A-01W	TCGA-23-1122-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-23-1030-01A-02W	TCGA-23-1030-10C-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-61-2003-01A-01W-0722-08	TCGA-61-2003-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-25-2399-01A-01W-0799-08	TCGA-25-2399-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-24-2281-01A-01W-0799-08	TCGA-24-2281-10A-01W-0799-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-23-2077-01A-01W-0722-08	TCGA-23-2077-10A-01W-0722-08	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519131	7519131	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.524	p.R175H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519167	7519167	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0926-01A-01W	TCGA-10-0926-11A-01D	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519167	7519167	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.488	p.Y163C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519167	7519167	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2261-01A-01W-0722-08	TCGA-24-2261-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7519167	7519167	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.488	p.Y163C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519168	7519168	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2104-01A-01W-0722-08	TCGA-61-2104-11A-01W-0723-08	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	7519168	7519168	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.487	p.Y163N	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519168	7519168	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519168	7519168	A	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.487	p.Y163H	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2009-01A-01W-0722-08	TCGA-61-2009-10A-01W-0722-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519186	7519186	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.469	p.V157F	0.1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519221	7519221	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1313-01A-01W	TCGA-25-1313-10A-01W	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519221	7519221	A	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.434	p.L145R	0.98	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519221	7519221	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1501-01A-01W	TCGA-13-1501-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519221	7519221	A	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.434	p.L145Q	0.98	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519225	7519225	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-20-0990-01A-01W	TCGA-20-0990-10A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519225	7519225	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.430	p.Q144*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519235	7519235	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7519235	7519235	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.420	p.C141fs	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7519096,7519279])"	no_errors
TP53	7157	broad.mit.edu	36	17	7519230	7519244	+	In_Frame_Del	DEL	GGGCAGGTCTTGGCC	GGGCAGGTCTTGGCC	-	novel	Unknown	TCGA-25-2393-01A-01W-0799-08	TCGA-25-2393-10A-01W-0799-08	GGGCAGGTCTTGGCC	GGGCAGGTCTTGGCC	-	-	GGGCAGGTCTTGGCC	GGGCAGGTCTTGGCC	Unknown	Unknown	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7519230	7519244	GGGCAGGTCTTGGCC	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.425_411	p.AKTCP138in_frame_del	0.999:1.000:1.000:1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:0.994:1.000:1.000:0.985	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7519096,7519279])"	no_errors
TP53	7157	broad.mit.edu	36	17	7519249	7519249	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0931-01A-01W	TCGA-10-0931-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7519249	7519249	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.406	p.Q136*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519259	7519259	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2262-01A-01W-0799-08	TCGA-24-2262-11A-01W-0799-08	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519259	7519259	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.396	p.K132N	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519261	7519261	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2000-01A-01W-0722-08	TCGA-61-2000-11A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	7519261	7519261	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.394	p.K132E	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519266	7519267	+	Frame_Shift_Ins	INS	-	-	GG	novel	Unknown	TCGA-13-1410-01A-01W	TCGA-13-1410-10A-01W	-	-	GG	GG	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7519266	7519267	-	GG	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.389_388	p.L130fs	0.974:0.951	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519267	7519267	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2094-01A-01W-0722-08	TCGA-61-2094-11A-01W-0722-08	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	7519267	7519267	G	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.388	p.L130V	0.95	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519275	7519275	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2110-01A-01W-0722-08	TCGA-61-2110-11A-01W-0723-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	7519275	7519275	G	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.380	p.S127Y	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7520040	7520040	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-25-1320-01A-01W	TCGA-25-1320-10A-01W	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7520040	7520040	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.372	p.C124fs	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	broad.mit.edu	36	17	7520060	7520061	+	Frame_Shift_Ins	INS	-	C	-	novel	Unknown	TCGA-61-2008-01A-02W-0722-08	TCGA-61-2008-11A-01W-0722-08	-	-	C	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7520060	7520061	-	C	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.352_351	p.T117fs	1.000:0.979	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7520087	7520121	+	Frame_Shift_Del	DEL	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	-	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	-	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7520087	7520121	AACCGTAGCTGCCCTGGTAGGTTTTCTGGGAAGGG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.325_291	p.Q100fs	0.330:0.183:0.165:0.162:0.166:0.178:0.151:0.019:0.003:0.025:0.345:0.734:0.731:0.078:0.860:0.941:0.999:0.999:0.993:0.668:0.645:0.642:0.600:0.610:0.602:0.560:0.575:0.595:0.590:0.909:0.938:0.944:1.000:1.000:1.000	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	broad.mit.edu	36	17	7520099	7520099	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	C	C	G	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	7520099	7520099	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.313	p.G105R	0.73	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7520099	7520099	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1494-01A-01W	TCGA-13-1494-10A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sequenom			Illumina GAIIx	17	7520099	7520099	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.313	p.G105C	0.73	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7520148	7520157	+	Frame_Shift_Del	DEL	GGCTGGTGCA	-	-	novel	Unknown	TCGA-61-2101-01A-01W-0722-08	TCGA-61-2101-11A-01W-0723-08	GGCTGGTGCA	GGCTGGTGCA	-	-	GGCTGGTGCA	GGCTGGTGCA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7520148	7520157	GGCTGGTGCA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.264_255	p.A86fs	1.000:1.000:1.000:1.000:1.000:0.984:0.662:0.689:0.520:0.508	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	broad.mit.edu	36	17	7520187	7520187	+	Frame_Shift_Del	DEL	A	-	-	novel	Unknown	TCGA-13-1505-01A-01D	TCGA-13-1505-10A-01D	A	A	-	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7520187	7520187	A	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.225	p.A76fs	0.05	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	broad.mit.edu	36	17	7520260	7520261	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-25-2391-01A-01W-0799-08	TCGA-25-2391-10A-01W-0799-08	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7520260	7520261	-	C	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.152_151	p.E51fs	0.000:0.000	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7520272	7520272	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1329-01A-01W	TCGA-25-1329-10A-01W	G	G	-	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7520272	7520272	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.140	p.P47fs	0	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	broad.mit.edu	36	17	7520281	7520285	+	Frame_Shift_Del	DEL	ATCAA	-	ATCAA	novel	Unknown	TCGA-13-0911-01A-01W	TCGA-13-0911-10A-01D	ATCAA	ATCAA	-	-	ATCAA	ATCAA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	7520281	7520285	ATCAA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.131_127	p.L43fs	0.067:0.089:0.152:0.176:0.168	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
NF1	4763	broad.mit.edu	36	17	26514375	26514375	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1367-01A-01W	TCGA-04-1367-10A-01W	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture,Sequenom"			Illumina GAIIx	17	26514375	26514375	C	T	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	nonsense	c.334	p.Q112*	1	NULL	"HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516"	-	no_errors
NF1	4763	broad.mit.edu	36	17	26533651	26533651	+	Splice_Site	SNP	G	G	T	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	26533651	26533651	G	T	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	splice_site	c.731-1	e8-1	1	-	-	-	no_errors
NF1	4763	broad.mit.edu	36	17	26573001	26573001	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-09-2053-01C-01W-0722-08	TCGA-09-2053-10A-01W-0722-08	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	26573001	26573001	T	C	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	missense	c.1649	p.L550P	1	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
NF1	4763	broad.mit.edu	36	17	26609644	26609644	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1331-01A-01W	TCGA-04-1331-10A-01W	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	26609644	26609644	A	G	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	missense	c.4330	p.K1444E	1	"HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP"	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
NF1	4763	broad.mit.edu	36	17	26678731	26678731	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	26678731	26678731	C	A	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	nonsense	c.5357	p.S1786*	1	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
NF1	4763	broad.mit.edu	36	17	26678946	26678946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-2078-01A-01W-0722-08	TCGA-23-2078-10A-01W-0722-08	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	26678946	26678946	G	A	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	missense	c.5572	p.A1858T	1	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
NF1	4763	broad.mit.edu	36	17	26678962	26678962	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	G	G	C	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture,Sequenom"			Illumina GAIIx	17	26678962	26678962	G	C	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	missense	c.5588	p.G1863A	1	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
NF1	4763	broad.mit.edu	36	17	26688724	26688724	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2363-01A-01W-0799-08	TCGA-59-2363-10A-01W-0800-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	26688724	26688724	G	T	SNP	NF1	NM_001042492	human	genbank	54_36p	1	reviewed	nonsense	c.6640	p.E2214*	1	NULL	"HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP"	-	no_errors
CDK12	51755	broad.mit.edu	36	17	34881415	34881415	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1495-01A-01W	TCGA-13-1495-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture,Sequenom"			Illumina GAIIx	17	34881415	34881415	C	T	SNP	CRKRS	NM_016507	human	genbank	54_36p	1	validated	nonsense	c.1804	p.Q602*	1	NULL	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CDK12	51755	broad.mit.edu	36	17	34902577	34902577	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-31-1953-01A-01W-0699-08	TCGA-31-1953-10A-01W-0699-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	34902577	34902577	G	A	SNP	CRKRS	NM_016507	human	genbank	54_36p	1	validated	nonsense	c.2156	p.W719*	1	superfamily_Protein kinase-like (PK-like)	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CDK12	51755	broad.mit.edu	36	17	34919519	34919519	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-2392-01A-01W-0799-08	TCGA-25-2392-10A-01W-0799-08	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	34919519	34919519	G	T	SNP	CRKRS	NM_016507	human	genbank	54_36p	1	validated	missense	c.2645	p.R882L	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CDK12	51755	broad.mit.edu	36	17	34925519	34925520	+	Frame_Shift_Ins	INS	-	G	-	novel	Unknown	TCGA-20-0987-01A-02W	TCGA-20-0987-10A-01W	-	-	G	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	34925519	34925520	-	G	INS	CRKRS	NM_016507	human	genbank	54_36p	1	validated	frame_shift_ins	c.2778_2779	p.E927fs	0.996:1.000	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase"	"superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST"	-	no_errors
CDK12	51755	broad.mit.edu	36	17	34927295	34927295	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2351-01A-01W-0799-08	TCGA-59-2351-10A-01W-0800-08	A	A	G	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	34927295	34927295	A	G	SNP	CRKRS	NM_016507	human	genbank	54_36p	1	validated	missense	c.2923	p.K975E	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CDK12	51755	broad.mit.edu	36	17	34929759	34929759	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1466-01A-01W	TCGA-24-1466-10A-01W	A	A	T	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	"Sequenom,Capture"			Illumina GAIIx	17	34929759	34929759	A	T	SNP	CRKRS	NM_016507	human	genbank	54_36p	1	validated	missense	c.2988	p.L996F	1	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	-	no_errors
CDK12	51755	broad.mit.edu	36	17	34929807	34929815	+	In_Frame_Del	DEL	ACAGACCCT	-	ACAGACCCT	novel	Unknown	TCGA-13-0891-01A-01W	TCGA-13-0891-10A-01D	ACAGACCCT	ACAGACCCT	-	-	ACAGACCCT	ACAGACCCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	34929807	34929815	ACAGACCCT	-	DEL	CRKRS	NM_016507	human	genbank	54_36p	1	validated	in_frame_del	c.3036_3044	p.TLQ1014in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:0.985:1.000:1.000	"HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase"	"HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase"	"(deletion:cds_exon[34929735,34929866])"	no_errors
TOP2A	7153	broad.mit.edu	36	17	35799793	35799793	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-30-1862-01A-02W-0699-08	TCGA-30-1862-10A-01W-0699-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	35799793	35799793	C	A	SNP	TOP2A	NM_001067	human	genbank	54_36p	-1	reviewed	missense	c.4417	p.D1473Y	1	HMMPfam_DTHCT	###############################################################################################################################################################################################################################################################	-	no_errors
TOP2A	7153	broad.mit.edu	36	17	35808375	35808375	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	"Broad454,Capture"			Illumina GAIIx	17	35808375	35808375	C	A	SNP	TOP2A	NM_001067	human	genbank	54_36p	-1	reviewed	missense	c.3498	p.L1166F	1	"HMMPfam_DNA_topoisoIV,HMMSmart_SM00434,superfamily_Type II DNA topoisomerase"	###############################################################################################################################################################################################################################################################	-	no_errors
BRCA1	672	broad.mit.edu	36	17	38469440	38469440	+	Frame_Shift_Del	DEL	C	-	C	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	C	C	-	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina_Capture			Illumina GAIIx	17	38469440	38469440	C	-	DEL	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.5129	p.G1710fs	1	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain"	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain"	"(deletion:cds_exon[38469417,38469494])"	no_errors
BRCA1	672	broad.mit.edu	36	17	38479937	38479937	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1357-01A-01W	TCGA-04-1357-11A-01W	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38479937	38479937	G	A	SNP	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	nonsense	c.4612	p.Q1538*	0	NULL	"superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain"	-	no_errors
BRCA1	672	broad.mit.edu	36	17	38499782	38499782	+	Nonsense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-29-2427-01A-01W-0799-08	TCGA-29-2427-10A-01W-0800-08	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	17	38499782	38499782	A	C	SNP	BRCA1	NM_007294	human	genbank	54_36p	-1	reviewed	nonsense	c.1292	p.L431*	0.06	NULL	"HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box"	-	no_errors
SON	6651	broad.mit.edu	36	21	33847128	33847128	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0899-01A-01W	TCGA-13-0899-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Capture			Illumina GAIIx	21	33847128	33847128	G	A	SNP	SON	NM_138927	human	genbank	54_36p	1	reviewed	missense	c.3721	p.V1241I	0.93	NULL	"HMMSmart_SM00443,HMMPfam_G-patch,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7517625	7517626	+	Frame_Shift_Del	DEL	GA	-	-	novel	Unknown	TCGA-24-2035-01A-01W-0722-08	TCGA-24-2035-10A-01W-0722-08	GA	GA	GA	-	GA	GA	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7517625	7517626	GA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.946_945	p.Q317fs	0.962:0.964	NULL	"HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"(deletion:cds_exon[7517578,7517651])"	no_errors
TP53	7157	broad.mit.edu	36	17	7517800	7517801	+	Frame_Shift_Ins	INS	-	T	T	novel	Unknown	TCGA-04-1342-01A-01W	TCGA-04-1342-11A-01W	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7517800	7517801	-	T	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.863_862	p.N288fs	0.940:0.933	HMMPfam_P53	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518335	7518335	+	Splice_Site	SNP	T	C	C	novel	Unknown	TCGA-24-2298-01A-01W-0799-08	TCGA-24-2298-11A-01W-0799-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518335	7518335	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site	c.673-2	e6-2	0.99	-	-	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-59-2354-01A-01W-0799-08	TCGA-59-2354-11A-01W-0800-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-61-2012-01A-01W-0722-08	TCGA-61-2012-11A-01W-0722-08	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-04-1356-01A-01W	TCGA-04-1356-11A-01W	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518915	7518915	T	C	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.659	p.Y220C	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1510-01A-02D	TCGA-13-1510-10A-01W	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518937	7518937	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.637	p.R213*	0.38	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7518982	7518982	+	Nonsense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-23-1027-01A-02W	TCGA-23-1027-10A-01W	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7518982	7518982	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.592	p.E198*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519000	7519000	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-2280-01A-01W-0799-08	TCGA-24-2280-10A-01W-0799-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7519000	7519000	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.574	p.Q192*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519000	7519000	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1431-01A-01D	TCGA-24-1431-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7519000	7519000	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	nonsense	c.574	p.Q192*	1	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7519193	7519194	+	In_Frame_Ins	INS	-	CCGGGCGGGGGTGTGGAATCAGTG	CCGGGCGGGGGTGTGGAATCAGTG	novel	Unknown	TCGA-25-2398-01A-01W-0799-08	TCGA-25-2398-10A-01W-0799-08	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina GAIIx	17	7519193	7519194	-	CCGGGCGGGGGTGTGGAATCAGTG	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.462_461	p.156in_frame_insDSTPPPGT	0.001:0.496	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	broad.mit.edu	36	17	7520032	7520032	+	Splice_Region	SNP	C	A	A	novel	Unknown	TCGA-23-2079-01A-01W-0722-08	TCGA-23-2079-10A-01W-0722-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			Illumina GAIIx	17	7520032	7520032	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_region	c.375+5	e3+5	1	-	-	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7517815	7517816	+	Frame_Shift_Ins	INS	-	A	A	novel	Unknown	TCGA-13-0897-01A-01W-0421-09	TCGA-13-0897-10A-01W-0421-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7517815	7517816	-	A	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.848_847	p.R283fs	0.013:0.012	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-24-1417-01A-01W-0549-09	TCGA-24-1417-10A-01W-0549-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7518264	7518264	G	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.742	p.R248W	1	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7519195	7519207	+	Frame_Shift_Del	DEL	CGGGCGGGGGTGT	-	-	novel	Unknown	TCGA-13-0723-01A-02W-0372-09	TCGA-13-0723-10B-01W-0372-09	CGGGCGGGGGTGT	CGGGCGGGGGTGT	CGGGCGGGGGTGT	-	CGGGCGGGGGTGT	CGGGCGGGGGTGT	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7519195	7519207	CGGGCGGGGGTGT	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.460_448	p.T150fs	0.496:0.001:0.001:0.001:0.001:0.996:0.998:0.906:0.998:0.997:0.001:0.001:0.001	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7519096,7519279])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7520032	7520032	+	Splice_Region	SNP	C	G	G	novel	Unknown	TCGA-10-0930-01A-02W-0421-09	TCGA-10-0930-11A-01W-0977-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	17	7520032	7520032	C	G	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_region	c.375+5	e3+5	1	-	-	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7514743	7514743	+	Frame_Shift_Del	DEL	G	-	-	novel	Unknown	TCGA-36-1576-01A-01W-0615-10	TCGA-36-1576-10A-01W-0615-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	17	7514743	7514743	G	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.1009	p.R337fs	0.47	"HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7514652,7514758])"	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	Unknown	TCGA-36-1574-01A-01W-0615-10	TCGA-36-1574-10A-01W-0615-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	17	7517845	7517845	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.818	p.R273H	0.81	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7518270	7518275	+	In_Frame_Del	DEL	TGCCGC	-	-	novel	Unknown	TCGA-13-0717-01A-01W-0370-10	TCGA-13-0717-10B-01W-0370-10	TGCCGC	TGCCGC	TGCCGC	-	TGCCGC	TGCCGC	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	17	7518270	7518275	TGCCGC	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	in_frame_del	c.736_731	p.GGM244in_frame_delV	1.000:1.000:1.000:0.996:0.171:0.996	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518224,7518333])"	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520083	7520083	+	Missense_Mutation	SNP	C	A	A	rs11540654	byCluster;byHapMap	TCGA-23-1120-01A-02W-0484-10	TCGA-23-1120-10A-01W-0484-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	17	7520083	7520083	C	A	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.329	p.R110L	0.02	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520201	7520202	+	Frame_Shift_Del	DEL	GA	-	-	novel	Unknown	TCGA-25-1634-01A-01W-0615-10	TCGA-25-1634-10A-01W-0616-10	GA	GA	-	-	GA	GA	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	17	7520201	7520202	GA	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.211_210	p.P72fs	0.662:0.662	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	hgsc.bcm.edu	36	17	7520294	7520306	+	Frame_Shift_Del	DEL	TTGCTTGGGACGG	-	-	novel	Unknown	TCGA-10-0927-01A-02W-0419-10	TCGA-10-0927-11A-01W-0419-10	TTGCTTGGGACGG	TTGCTTGGGACGG	TTGCTTGGGACGG	-	TTGCTTGGGACGG	TTGCTTGGGACGG	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	17	7520294	7520306	TTGCTTGGGACGG	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.118_106	p.P36fs	0.000:0.000:0.001:0.000:0.000:0.001:0.001:0.002:0.000:0.000:0.000:0.000:0.000	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7520037,7520315])"	no_errors
TP53	7157	genome.wustl.edu	36	17	7520228	7520228	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	C	C	T	T	C	C	Unknown	Unknown	Somatic	Phase_I	Capture		1	dbGAP	Illumina GAIIx	17	7520228	7520228	C	T	SNP	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	missense	c.184	p.E62K	0.02	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7520215	7520216	+	Frame_Shift_Ins	INS	-	ATTCTGGG	ATTCTGGG	novel	Unknown	TCGA-13-1506-01A-01W-0549-09	TCGA-13-1506-10A-01W-0550-09	-	-	ATTCTGGG	ATTCTGGG	-	-	Unknown	Unknown	Somatic	Phase_I	Capture		1	dbGAP	Illumina GAIIx	17	7520215	7520216	-	ATTCTGGG	INS	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.197_196	p.M66fs	0.005:0.007	NULL	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	-	no_errors
TP53	7157	genome.wustl.edu	36	17	7518315	7518346	+	Splice_Site	DEL	TGGTACAGTCAGAGCCAACCTAGGAGATAACA	G	G	novel	Unknown	TCGA-24-1549-01A-01W-0553-09	TCGA-24-1549-10A-01W-0553-09	TGGTACAGTCAGAGCCAACCTAGGAGATAACA	TGGTACAGTCAGAGCCAACCTAGGAGATAACA					Unknown	Unknown	Somatic	Phase_I	Capture		1	dbGAP	Illumina GAIIx	17	7518315	7518346	TGGTACAGTCAGAGCCAACCTAGGAGATAAC	-	DEL	TP53	NM_000546	human	genbank	54_36p	-1	reviewed	splice_site_del	c.691_673	p.VGSDCTTIHY225in_frame_delPSTT	1.000:1.000:1.000:1.000:0.995:0.995:0.997:0.984:1.000:0.998:0.801:0.967:0.950:0.950:0.983:0.982:0.590:0.784:0.836	"superfamily_p53-like transcription factors,HMMPfam_P53"	"PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD"	"(deletion:cds_exon[7518224,7518333], intron[7518334,7518901])"	no_errors